Citrus Sinensis ID: 024411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MQPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Secondary Structure (PSIPRED)
cccEEccEEEEEEEccccccccccEEEEccccEEEEEEcccccccccccccccHHHcccccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccEEEcccccccHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccEEEEEccccccccccccccccHHHHHHccEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEHHHcccHHHHHHHHccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEccEEEEEEEccccccccccEEEEccccEEEEEEccccEEEcccccccHHHHHHHcccccHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccHHEccHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHcccccEEEEHHHEcccccccccccHHHHHHHHHHHEcEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHcHHHHHHHHccccccEEEEEEcc
Coil and Loop (DISEMBL)
mqpisgygvakvldsenpefnkgdlvwgmtgweeyslitaphlfkiqhtdvplsyytgilgmpgmtAYVGFyevcspkhgecvfisaasGAVGQLVGQFAKLLGCYvvgsagskdkVDLLKnkfgfdeafnYKEEADLNAALKRYFPEGIDIYFENVggklldavlpnmkiRGRIAACGMisqynldkpegvHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIphikegklVYVEDMAEGLESAPAALIGLfsgqnvgkqvvavap
Flexible Loop (DISEMBL)
mqpisgygvakvldsenpefNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Low Complexity Region (SEG)
MQPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Disordered region (IsUnstruct)
***********V******EFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQV*****
Disordered Region (DISOPRED)
MQPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Disordered Region (DISEMBL)
MQPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Disordered Region (DISPRO)
*QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q39173	343	NADP-dependent alkenal do	yes	no	0.992	0.775	0.727	1e-115
Q6WAU0	342	(+)-pulegone reductase OS	N/A	no	0.985	0.771	0.710	1e-114
Q39172	345	NADP-dependent alkenal do	no	no	0.992	0.771	0.723	1e-114
Q9C0Y6	349	Zinc-type alcohol dehydro	yes	no	0.985	0.756	0.453	2e-55
O34812	339	Putative NADP-dependent o	yes	no	0.988	0.781	0.423	2e-54
Q91YR9	329	Prostaglandin reductase 1	yes	no	0.958	0.781	0.460	8e-53
P97584	329	Prostaglandin reductase 1	yes	no	0.962	0.784	0.446	3e-52
Q9EQZ5	329	Prostaglandin reductase 1	yes	no	0.966	0.787	0.449	1e-51
P76113	345	NADPH-dependent curcumin	N/A	no	0.970	0.753	0.412	1e-51
Q3SZJ4	329	Prostaglandin reductase 1	yes	no	0.962	0.784	0.443	2e-51

>sp|Q39173|P2_ARATH NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/268 (72%), Positives = 234/268 (87%), Gaps = 2/268 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLIT--APHLFKIQHTDVPLSYYTGI 59
           +PI GYGV++V++S +P++ KGDL+WG+ GWEEYS+IT  A   FKIQHTDVPLSYYTG+
Sbjct: 74  KPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGL 133

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQFAK++GCYVVGSAGSK+KVDL
Sbjct: 134 LGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDL 193

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK KFGFD+AFNYKEE+DL+AALKR FP+GID+YFENVGGK+LDAVL NM   GRIA CG
Sbjct: 194 LKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCG 253

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           MISQYNL+  EGVHNL  ++ KR+R++GF+V D Y  YPKFLE+++P IKEGK+ YVED+
Sbjct: 254 MISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDV 313

Query: 240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
           A+GLE AP AL+GLF G+NVGKQVV +A
Sbjct: 314 ADGLEKAPEALVGLFHGKNVGKQVVVIA 341

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 4

>sp|Q6WAU0|PULR_MENPI (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/266 (71%), Positives = 236/266 (88%), Gaps = 2/266 (0%)

Query: 4   ISGYGVAKVLDSENPEFNKGDLVWG-MTGWEEYSLITAPH-LFKIQHTDVPLSYYTGILG 61
           I  YGV+KVLDS +P + KG+L+WG   GWEEY+LI  P+ LFKIQ  DVPLSYY GILG
Sbjct: 75  IVSYGVSKVLDSTHPSYEKGELIWGSQAGWEEYTLIQNPYNLFKIQDKDVPLSYYVGILG 134

Query: 62  MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
           MPGMTAY GF+E+CSPK GE VF++AA+G+VGQLVGQFAK+ GCYVVGSAGSK+KVDLLK
Sbjct: 135 MPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFAKMFGCYVVGSAGSKEKVDLLK 194

Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
           NKFGFD+AFNYKEE+D + ALKR+FPEGIDIYF+NVGGK+L+AV+ NM++ GRIA CGM+
Sbjct: 195 NKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGMV 254

Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE 241
           SQY+L +PEGVHNL+ L+ K++RM+GF+V+D+YHLYPKFLEM++P IKEGK+ YVED++E
Sbjct: 255 SQYSLKQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDISE 314

Query: 242 GLESAPAALIGLFSGQNVGKQVVAVA 267
           GLESAP+AL+G++ G+NVG QVVAV+
Sbjct: 315 GLESAPSALLGVYVGRNVGNQVVAVS 340

Monoterpene synthase that catalyzes the specific reduction of the 4,8-double bond of (+)-pulegone to produce both (-)-menthone and (+)-isomenthone in a 70:30 ratio. Unable to utilize either (-)-isopiperitenone or (+)-cis-isopulegone, or to catalyze the reverse reaction with (-)-menthone or (+)-isomenthone. Has an absolute requirement for NADPH.

Mentha piperita (taxid: 34256)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q39172|P1_ARATH NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/268 (72%), Positives = 230/268 (85%), Gaps = 2/268 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
           QPI GYGV+++++S +P++ KGDL+WG+  WEEYS+IT   H  FKIQHTDVPLSYYTG+
Sbjct: 76  QPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL 135

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDL
Sbjct: 136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK KFGFD+AFNYKEE+DL AALKR FP GIDIYFENVGGK+LDAVL NM + GRIA CG
Sbjct: 196 LKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCG 255

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           MISQYNL+  EGVHNL  ++ KR+R++GF+V D Y  Y KFLE ++PHI+EGK+ YVED+
Sbjct: 256 MISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315

Query: 240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
           A+GLE AP AL+GLF G+NVGKQVV VA
Sbjct: 316 ADGLEKAPEALVGLFHGKNVGKQVVVVA 343

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q9C0Y6|YKM8_SCHPO Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.08c PE=3 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 168/271 (61%), Gaps = 7/271 (2%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTD----VPLSYYT 57
           +P     VAKV+ S   ++  G  V  ++GWEEY+ ++   L  +Q  +    +PL  + 
Sbjct: 79  KPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFV 138

Query: 58  GILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
           G LGMP  TAY G   +  PK GE ++ISAASGAVGQ+ GQ AK +G +VVGS GS +K 
Sbjct: 139 GSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKF 198

Query: 118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
            +  +  G+D  FNYK+E+   A L R  P+GIDIYFENVGG+ +DAVL NM ++GRI  
Sbjct: 199 KICLDS-GYDSVFNYKKESPFKA-LPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIF 256

Query: 178 CGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYP-KFLEMIIPHIKEGKLVYV 236
           CG ISQYN   P  V NL  ++ K L ++GFIV +    Y  ++ E +   I EGK+ Y 
Sbjct: 257 CGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYK 316

Query: 237 EDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
            D+ +GLESAP A IG+  G+N GK +V +A
Sbjct: 317 CDVYDGLESAPEAFIGMLQGKNSGKTIVKIA 347

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O34812|YFMJ_BACSU Putative NADP-dependent oxidoreductase YfmJ OS=Bacillus subtilis (strain 168) GN=yfmJ PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 161/269 (59%), Gaps = 4/269 (1%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILG 61
           + +SG  +A+V+ S+     KGD+V G   W+E+S ++   L KI  +  P S Y GILG
Sbjct: 69  KALSGGVIAEVV-SDGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPASAYLGILG 127

Query: 62  MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
           M G+TAY G  ++  PK GE V +S A+GAVG  VGQ AK+ G  VVG AGS +K+D LK
Sbjct: 128 MTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLK 187

Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
            +  FDEA NYK   D+  AL+   P+G+D+YF+NVGG + DAV+  +    RI  CG I
Sbjct: 188 QELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAI 247

Query: 182 SQYNLDKPE---GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED 238
           S YN +      G      L+  +  M+GFIV D+   + +  + +   +K GKL Y E 
Sbjct: 248 SSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEET 307

Query: 239 MAEGLESAPAALIGLFSGQNVGKQVVAVA 267
           + EG E+ P A +GLF G+N GKQ++ V+
Sbjct: 308 ITEGFENIPDAFLGLFKGENKGKQLIKVS 336

Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q91YR9|PTGR1_MOUSE Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2

 Score =  207 bits (526), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 165/265 (62%), Gaps = 8/265 (3%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFK--IQHTD-VPLSYYTGILGM 62
           G  VA+V++S+N  F KG +V  + GW  +S+     L K  ++  D +PLS   G +GM
Sbjct: 65  GEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGM 124

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  ++C  K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +KV  LK 
Sbjct: 125 PGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK- 183

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD AFNYK    L  AL+   P+G D YF+NVGG+  +AV+  MK  GRIA CG IS
Sbjct: 184 KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAIS 243

Query: 183 QYNLDK--PEGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           QYN     P+G    + ++ ++LRMEGFIV      +  K L  ++  + EGK+   E +
Sbjct: 244 QYNRTGPCPQGPAPEV-VIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYV 302

Query: 240 AEGLESAPAALIGLFSGQNVGKQVV 264
            EG E  PAA +G+  G+N+GK +V
Sbjct: 303 TEGFEKMPAAFMGMLKGENLGKTIV 327

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|P97584|PTGR1_RAT Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/264 (44%), Positives = 159/264 (60%), Gaps = 6/264 (2%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VA+V++S+N  F  G +V  + GW  +S+     L K+       +PLS   G +GM
Sbjct: 65  GEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGM 124

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  ++C  K GE V ++AA+GAVG +VGQ AKL GC VVG+AGS +KV  LK 
Sbjct: 125 PGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK- 183

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD AFNYK    L  AL+   P+G D YF+NVGG+  + V+  MK  GRIA CG IS
Sbjct: 184 KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAIS 243

Query: 183 QYNLDKP-EGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           QYN   P     +   ++ ++LRMEGFIV      +  K L  ++  + EGK+ Y E + 
Sbjct: 244 QYNRTGPCPPGPSPEVIIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYIT 303

Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
           EG E  PAA +G+  G N+GK +V
Sbjct: 304 EGFEKMPAAFMGMLKGDNLGKTIV 327

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q9EQZ5|PTGR1_CAVPO Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/265 (44%), Positives = 162/265 (61%), Gaps = 6/265 (2%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VA+V++S+N  F  G +V   +GW  + +     L K+       +PLS   G +GM
Sbjct: 65  GQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGM 124

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  EVC  K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +K+  LK 
Sbjct: 125 PGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK- 183

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           + GFD AFNYK    L  ALK+  P+G D YF+NVGG+ L+ VL  MK  G+IA CG IS
Sbjct: 184 QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAIS 243

Query: 183 QYN-LDKPEGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
            YN +D+     +   ++ K+LR+EGFIV      +  K L  ++  + EGK+ Y E + 
Sbjct: 244 VYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVT 303

Query: 241 EGLESAPAALIGLFSGQNVGKQVVA 265
           +G E+ PAA I + +G N+GK VV 
Sbjct: 304 KGFENMPAAFIEMLNGANLGKAVVT 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|P76113|CURA_ECOLI NADPH-dependent curcumin reductase OS=Escherichia coli (strain K12) GN=curA PE=1 SV=3

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 161/269 (59%), Gaps = 9/269 (3%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKI-QHTDVPLSYYTGILGMPG 64
           G  V++V++S +P++  GD V G +GW++Y + +   L K+  H   P S+  G+LGMPG
Sbjct: 76  GGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPG 134

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
            TAY+G  ++  PK GE + ++AA+G VG  VGQ  KL GC VVG AG  +K        
Sbjct: 135 FTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVL 194

Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
           GFD   ++  + D    L +  P+GIDIY+ENVGGK+ DAVLP +    RI  CG++S Y
Sbjct: 195 GFDVCLDHHAD-DFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSY 253

Query: 185 NLDK-PEGVHNLMYLVS----KRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVED 238
           N  + P G   L  L++    KR+R++GFI+   Y H   +F   +   +KE K+ Y E+
Sbjct: 254 NATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREE 313

Query: 239 MAEGLESAPAALIGLFSGQNVGKQVVAVA 267
           + +GLE+AP   IGL  G+N GK V+ VA
Sbjct: 314 ITDGLENAPQTFIGLLKGKNFGKVVIRVA 342

Catalyzes the metal-independent reduction of curcumin to dihydrocurcumin (DHC) as an intermediate product, followed by further reduction to tetrahydrocurcumin (THC) as an end product. It also acts on 3-octene-2-one, 3-hepten-2-one, resveratrol, and trans-2-octenal.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: n

EC: 3

>sp|Q3SZJ4|PTGR1_BOVIN Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/264 (44%), Positives = 156/264 (59%), Gaps = 6/264 (2%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKI---QHTDVPLSYYTGILGM 62
           G  VA+V++S+N  F  G +V   +GW  +S+     L K+       +PLS   G +GM
Sbjct: 65  GEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGM 124

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  ++C  K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +KV  LK 
Sbjct: 125 PGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK- 183

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD A NYK    L  ALK   PEG D YF+NVGG+  +  +  MK  GRIA CG IS
Sbjct: 184 KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAIS 243

Query: 183 QYNLDKPEGV-HNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
            YN   P     +   ++ K L ++GF+V      +  K L  ++  + EGK+ Y E + 
Sbjct: 244 VYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEHVT 303

Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
           EG E+ PAA IGL  G+N+GK +V
Sbjct: 304 EGFENMPAAFIGLLKGENLGKAIV 327

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
225434189	345	PREDICTED: NADP-dependent alkenal double	0.992	0.771	0.812	1e-126
308943732	347	alcohol dehydrogenase [Camellia sinensis	0.992	0.766	0.805	1e-124
224117858	348	predicted protein [Populus trichocarpa]	0.992	0.764	0.786	1e-123
444302246	351	Chain A, X-ray Crystal Structure Of A Do	0.992	0.757	0.794	1e-123
6692816	343	allyl alcohol dehydrogenase [Nicotiana t	0.992	0.775	0.794	1e-123
224117874	348	predicted protein [Populus trichocarpa]	0.992	0.764	0.786	1e-122
225434197	345	PREDICTED: NADP-dependent alkenal double	0.985	0.765	0.8	1e-122
342898881	352	ketone/zingerone synthase 2 [Rubus idaeu	0.992	0.755	0.780	1e-121
342898879	348	ketone/zingerone synthase 1 [Rubus idaeu	0.992	0.764	0.775	1e-121
224813796	347	2-alkenal reductase [Artemisia annua]	0.992	0.766	0.779	1e-120

>gi|225434189|ref|XP_002279359.1| PREDICTED: NADP-dependent alkenal double bond reductase P2 [Vitis vinifera] gi|147792339|emb|CAN61471.1| hypothetical protein VITISV_043825 [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/267 (81%), Positives = 243/267 (91%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHLFKIQHTDVPLSYYTGIL 60
            PI+GYGVAKVLDS +P+F  GDLVWG+TGWEEYSLIT    LFKIQHTDVPLSYYTGIL
Sbjct: 77  SPITGYGVAKVLDSRHPDFRTGDLVWGITGWEEYSLITTDERLFKIQHTDVPLSYYTGIL 136

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GM GMTAY GFYE+CSPK GE VFISAASGAVGQLVGQFAKLLGCYVVGSAG+K+KVDLL
Sbjct: 137 GMAGMTAYSGFYEICSPKKGEYVFISAASGAVGQLVGQFAKLLGCYVVGSAGTKEKVDLL 196

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFDEAFNYKEE DL A LKRYFPEGIDIYFENVGGK+LDAVL NM++ GRIA CGM
Sbjct: 197 KNKFGFDEAFNYKEEQDLEACLKRYFPEGIDIYFENVGGKMLDAVLVNMRLHGRIAVCGM 256

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++PEGV NL  +V+KR+RMEGF+V D+YHLYPKFL++I+P+I+EGK+VYVED+A
Sbjct: 257 ISQYNLEEPEGVRNLFTIVTKRIRMEGFLVFDYYHLYPKFLDLIMPYIREGKIVYVEDIA 316

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           EGLESAP ALIGL+SG+NVGKQVV VA
Sbjct: 317 EGLESAPTALIGLYSGRNVGKQVVVVA 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308943732|gb|ADO51748.1| alcohol dehydrogenase [Camellia sinensis]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/267 (80%), Positives = 243/267 (91%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAP-HLFKIQHTDVPLSYYTGIL 60
            PI+G+GVA+VLDS +P F KGDL+WG TGWEEY++IT P ++FKIQ+TDVPLSYYTGIL
Sbjct: 79  SPITGFGVARVLDSGHPNFKKGDLIWGRTGWEEYTIITEPANVFKIQNTDVPLSYYTGIL 138

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GM GMTAYVGFYE+CSPK G+ VFISAASGAVGQLVGQFAKLLGCYVVGSAG+K+KVDLL
Sbjct: 139 GMHGMTAYVGFYEICSPKQGDYVFISAASGAVGQLVGQFAKLLGCYVVGSAGTKEKVDLL 198

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFDEAFNYKEE DL AALKRYFP GI+IYFENVGGK+LDAVL NM++  RIA CGM
Sbjct: 199 KNKFGFDEAFNYKEEKDLEAALKRYFPNGINIYFENVGGKMLDAVLANMRLHSRIAVCGM 258

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++PEGVHNL  L++KR+RMEGFIV D+YHLYPKFLEMI+P IK GK+ YVED+A
Sbjct: 259 ISQYNLERPEGVHNLFCLITKRVRMEGFIVFDYYHLYPKFLEMILPCIKGGKITYVEDVA 318

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           EGLESAPAALIGLFSG+NVGKQVV VA
Sbjct: 319 EGLESAPAALIGLFSGRNVGKQVVVVA 345

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117858|ref|XP_002331649.1| predicted protein [Populus trichocarpa] gi|222874045|gb|EEF11176.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/267 (78%), Positives = 245/267 (91%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PISG GVAKVLDS +P++ KGD +WGMTGWEEYSLITA   LFKI   DVPLSYYTGIL
Sbjct: 80  SPISGRGVAKVLDSRHPDYKKGDFIWGMTGWEEYSLITATETLFKIHDKDVPLSYYTGIL 139

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPG+TAY GFYE+CSPK GE VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL
Sbjct: 140 GMPGLTAYAGFYEICSPKKGEFVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 199

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFD+AFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAV+ NM++RGRI+ CGM
Sbjct: 200 KNKFGFDDAFNYKEELDLDAALKRYFPDGIDIYFENVGGKMLDAVVLNMRVRGRISVCGM 259

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           +SQYNL++PEGVHNLM+LV KR+ MEGF+V D +HL+PK+L+M++P+IK+GK+VYVED+A
Sbjct: 260 VSQYNLEQPEGVHNLMHLVPKRIHMEGFLVYDFFHLFPKYLDMVLPYIKQGKIVYVEDIA 319

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           EGLE+APAAL GLF+G+N+GKQVVAV+
Sbjct: 320 EGLENAPAALTGLFAGRNIGKQVVAVS 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444302246|pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302247|pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302248|pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302249|pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302250|pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum gi|444302251|pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/267 (79%), Positives = 241/267 (90%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PI+GYGVAKVL+S +P+F KGDLVWGMTGWEEYS+IT    LFKI   DVPLSYYTGIL
Sbjct: 75  SPITGYGVAKVLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGIL 134

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAY GF+EVCSPK GE VF+SAASGAVGQLVGQFAK+LGCYVVGSAGSK+KVDLL
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           K+KFGFDEAFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAVL NMK+ GRIA CGM
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++ EGVHNL  L++KR+RMEGF+V D+YHLYPK+LEM+IP IK GK+VYVED+A
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
            GLESAP AL+GLFSG+N+GKQVV V+
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVS 341

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692816|dbj|BAA89423.1| allyl alcohol dehydrogenase [Nicotiana tabacum]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/267 (79%), Positives = 241/267 (90%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PI+GYGVAKVL+S +P+F KGDLVWGMTGWEEYS+IT    LFKI   DVPLSYYTGIL
Sbjct: 75  SPITGYGVAKVLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGIL 134

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAY GF+EVCSPK GE VF+SAASGAVGQLVGQFAK+LGCYVVGSAGSK+KVDLL
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           K+KFGFDEAFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAVL NMK+ GRIA CGM
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++ EGVHNL  L++KR+RMEGF+V D+YHLYPK+LEM+IP IK GK+VYVED+A
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
            GLESAP AL+GLFSG+N+GKQVV V+
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVS 341

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117874|ref|XP_002331653.1| predicted protein [Populus trichocarpa] gi|222874049|gb|EEF11180.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/267 (78%), Positives = 244/267 (91%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PISG GVAKVLDS +P++ KGD +WG+TGWEEYSLITA   LFKI   DVPLSYYTGIL
Sbjct: 80  SPISGRGVAKVLDSRHPDYKKGDFIWGITGWEEYSLITATETLFKIHDKDVPLSYYTGIL 139

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAY GFYE+CSPK GE VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL
Sbjct: 140 GMPGMTAYAGFYEICSPKKGEFVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 199

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFD+AFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAVL NM++RGRI+ CGM
Sbjct: 200 KNKFGFDDAFNYKEELDLDAALKRYFPDGIDIYFENVGGKILDAVLLNMRVRGRISVCGM 259

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           +SQYNL++PEGVHNLM+LV KR+ MEGF+V   +HL+PK+L+M++P+IK+GK+VYVED+A
Sbjct: 260 VSQYNLEQPEGVHNLMHLVLKRIHMEGFLVYYFFHLFPKYLDMVLPYIKQGKIVYVEDIA 319

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           EGLE+APAAL GLF+G+N+GKQVVAV+
Sbjct: 320 EGLENAPAALTGLFAGRNIGKQVVAVS 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434197|ref|XP_002279529.1| PREDICTED: NADP-dependent alkenal double bond reductase P2 [Vitis vinifera] gi|147783628|emb|CAN68149.1| hypothetical protein VITISV_035666 [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/265 (80%), Positives = 241/265 (90%), Gaps = 1/265 (0%)

Query: 4   ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGILGM 62
           ISGYGVAKVLDS +P F+KGDLVWG TGWEEY+LITAP  LFKI + DVPLSYY GILGM
Sbjct: 79  ISGYGVAKVLDSGHPNFSKGDLVWGFTGWEEYTLITAPESLFKIPNNDVPLSYYIGILGM 138

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY GFYE+CSPK GE V++SAASGAVGQLVGQFAKL+GCYVVGSAGSK+KVDLLKN
Sbjct: 139 PGITAYAGFYEICSPKKGEYVYVSAASGAVGQLVGQFAKLIGCYVVGSAGSKEKVDLLKN 198

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           KFGFDEAFNYKEE DL A LKRYFPEGIDIYFENVGG +LDAVL NM+++GRIAACGMIS
Sbjct: 199 KFGFDEAFNYKEEQDLVACLKRYFPEGIDIYFENVGGPMLDAVLANMRVQGRIAACGMIS 258

Query: 183 QYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEG 242
           QYNLDKP GV+NLM ++ K+++M+GF+   ++HLYPKFLEMI+PH+KEGK+VYVED+AEG
Sbjct: 259 QYNLDKPVGVYNLMNIIKKQIKMQGFVAGSYFHLYPKFLEMILPHVKEGKVVYVEDIAEG 318

Query: 243 LESAPAALIGLFSGQNVGKQVVAVA 267
           LESAP ALIGLFSG+NVGKQVV VA
Sbjct: 319 LESAPQALIGLFSGRNVGKQVVLVA 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342898881|gb|AEL78826.1| ketone/zingerone synthase 2 [Rubus idaeus]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 240/269 (89%), Gaps = 3/269 (1%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH---LFKIQHTDVPLSYYTG 58
            PI+GYGVAKVL+S +  F +GDLVWG TGWEEY++I A H   LFKI++TDVPLSYYTG
Sbjct: 82  SPITGYGVAKVLESADARFKQGDLVWGFTGWEEYTVINATHIESLFKIENTDVPLSYYTG 141

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           ILGMPGMTAY GFYEVCSPK GE V+ISAASGAVGQLVGQFAKL GCYVVGSAG+K+KVD
Sbjct: 142 ILGMPGMTAYAGFYEVCSPKKGETVYISAASGAVGQLVGQFAKLSGCYVVGSAGTKEKVD 201

Query: 119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
           LLKNKFGFDEAFNYKEE +L+AALKRYFPEGIDIYFENVGGK+LDAVL NM+ RGRIA C
Sbjct: 202 LLKNKFGFDEAFNYKEEPNLDAALKRYFPEGIDIYFENVGGKMLDAVLLNMRFRGRIAVC 261

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED 238
           GMISQYNL+KPEGV NLM L+ K +R++GF VL++YHLY KFLEM++P IKEGK+ YVED
Sbjct: 262 GMISQYNLEKPEGVQNLMSLIYKEVRIQGFGVLNYYHLYEKFLEMVLPAIKEGKITYVED 321

Query: 239 MAEGLESAPAALIGLFSGQNVGKQVVAVA 267
           + EGLESAP+ALIGLF+G+NVGKQVV V+
Sbjct: 322 VVEGLESAPSALIGLFTGRNVGKQVVVVS 350

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342898879|gb|AEL78825.1| ketone/zingerone synthase 1 [Rubus idaeus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/267 (77%), Positives = 242/267 (90%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PI GYGVA+VL+S NP+FN GDLVWG TGWEEYS+ITA   LFKI +TDVPLSYYTG+L
Sbjct: 80  SPIIGYGVARVLESGNPKFNPGDLVWGFTGWEEYSVITATESLFKIHNTDVPLSYYTGLL 139

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAY GFYE+CSPK GE V++SAASGAVGQLVGQFAKL GCYVVGSAGSK+KVDLL
Sbjct: 140 GMPGMTAYAGFYEICSPKKGETVYVSAASGAVGQLVGQFAKLTGCYVVGSAGSKEKVDLL 199

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFDEAFNYKEEADL+AAL+RYFP+GIDIYFENVGGK+LDAVLPNM+ +GRIA CGM
Sbjct: 200 KNKFGFDEAFNYKEEADLDAALRRYFPDGIDIYFENVGGKMLDAVLPNMRPKGRIAVCGM 259

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++PEGV NLM L+ K++RMEGF+V  +YHLY KFLE ++P+IK+GK+ YVED+ 
Sbjct: 260 ISQYNLEQPEGVRNLMALIVKQVRMEGFMVFSYYHLYGKFLETVLPYIKQGKITYVEDVV 319

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           +GL++APAALIGL+SG+NVGKQVV V+
Sbjct: 320 DGLDNAPAALIGLYSGRNVGKQVVVVS 346

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224813796|gb|ACN65116.1| 2-alkenal reductase [Artemisia annua]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/267 (77%), Positives = 238/267 (89%), Gaps = 1/267 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            P++GYGVAKVL+S +  F KGDL+WG TGWEEYS+I AP  LFKI+HTDVPLSYYTGIL
Sbjct: 79  SPLTGYGVAKVLESGHANFKKGDLIWGFTGWEEYSIINAPEGLFKIEHTDVPLSYYTGIL 138

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAYVGFYE+C+PK GE VF+SAASGAVGQLVGQFAKL GCYVVGSAG+K+KVDLL
Sbjct: 139 GMPGMTAYVGFYEICTPKKGEYVFVSAASGAVGQLVGQFAKLSGCYVVGSAGTKEKVDLL 198

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNKFGFDEAFNYKEE DL+AALKRYFPEGIDIYFENVGG++LDAVL NM++ GRI+ CGM
Sbjct: 199 KNKFGFDEAFNYKEEQDLDAALKRYFPEGIDIYFENVGGRMLDAVLLNMRLDGRISVCGM 258

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++ EGV NL  LV+KR+ M+GFIV DHYH YPK+LEMIIP IK G + Y+ED+ 
Sbjct: 259 ISQYNLEQSEGVRNLFTLVTKRVTMKGFIVFDHYHKYPKYLEMIIPLIKNGTINYIEDIV 318

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           EGLE+APAALIGL+SG+NVGKQVV VA
Sbjct: 319 EGLENAPAALIGLYSGKNVGKQVVVVA 345

Source: Artemisia annua

Species: Artemisia annua

Genus: Artemisia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2148166	343	AT5G16990 [Arabidopsis thalian	0.992	0.775	0.727	3e-108
TAIR|locus:2148131	345	AER "alkenal reductase" [Arabi	0.992	0.771	0.723	2.1e-107
UNIPROTKB|Q6WAU0	342	Q6WAU0 "(+)-pulegone reductase	0.985	0.771	0.710	5.7e-107
TAIR|locus:2028736	351	AT1G26320 [Arabidopsis thalian	0.988	0.754	0.726	2.5e-106
TAIR|locus:2148186	345	AT5G17000 [Arabidopsis thalian	0.992	0.771	0.716	2.5e-106
TAIR|locus:2097795	350	AT3G03080 [Arabidopsis thalian	0.992	0.76	0.711	8.3e-106
TAIR|locus:2148116	346	AT5G16960 [Arabidopsis thalian	0.996	0.771	0.713	8.3e-106
TAIR|locus:2153759	353	AT5G37980 [Arabidopsis thalian	0.992	0.753	0.716	7.5e-105
TAIR|locus:2153799	353	AT5G37940 [Arabidopsis thalian	0.992	0.753	0.701	1.8e-103
TAIR|locus:2154041	353	AT5G38000 [Arabidopsis thalian	0.992	0.753	0.694	1.3e-102

TAIR|locus:2148166 AT5G16990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 195/268 (72%), Positives = 235/268 (87%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
             +PI GYGV++V++S +P++ KGDL+WG+ GWEEYS+IT   H+ FKIQHTDVPLSYYTG+
Sbjct:    74 KPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGL 133

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQFAK++GCYVVGSAGSK+KVDL
Sbjct:   134 LGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDL 193

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFGFD+AFNYKEE+DL+AALKR FP+GID+YFENVGGK+LDAVL NM   GRIA CG
Sbjct:   194 LKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCG 253

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL+  EGVHNL  ++ KR+R++GF+V D Y  YPKFLE+++P IKEGK+ YVED+
Sbjct:   254 MISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDV 313

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             A+GLE AP AL+GLF G+NVGKQVV +A
Sbjct:   314 ADGLEKAPEALVGLFHGKNVGKQVVVIA 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

TAIR|locus:2148131 AER "alkenal reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 194/268 (72%), Positives = 230/268 (85%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
             QPI GYGV+++++S +P++ KGDL+WG+  WEEYS+IT   H  FKIQHTDVPLSYYTG+
Sbjct:    76 QPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL 135

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDL
Sbjct:   136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFGFD+AFNYKEE+DL AALKR FP GIDIYFENVGGK+LDAVL NM + GRIA CG
Sbjct:   196 LKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCG 255

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL+  EGVHNL  ++ KR+R++GF+V D Y  Y KFLE ++PHI+EGK+ YVED+
Sbjct:   256 MISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             A+GLE AP AL+GLF G+NVGKQVV VA
Sbjct:   316 ADGLEKAPEALVGLFHGKNVGKQVVVVA 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP;IMP

GO:0032440 "2-alkenal reductase [NAD(P)

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q6WAU0 Q6WAU0 "(+)-pulegone reductase" [Mentha x piperita (taxid:34256)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 189/266 (71%), Positives = 236/266 (88%)

Query:     4 ISGYGVAKVLDSENPEFNKGDLVWG-MTGWEEYSLITAPH-LFKIQHTDVPLSYYTGILG 61
             I  YGV+KVLDS +P + KG+L+WG   GWEEY+LI  P+ LFKIQ  DVPLSYY GILG
Sbjct:    75 IVSYGVSKVLDSTHPSYEKGELIWGSQAGWEEYTLIQNPYNLFKIQDKDVPLSYYVGILG 134

Query:    62 MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
             MPGMTAY GF+E+CSPK GE VF++AA+G+VGQLVGQFAK+ GCYVVGSAGSK+KVDLLK
Sbjct:   135 MPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFAKMFGCYVVGSAGSKEKVDLLK 194

Query:   122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
             NKFGFD+AFNYKEE+D + ALKR+FPEGIDIYF+NVGGK+L+AV+ NM++ GRIA CGM+
Sbjct:   195 NKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGMV 254

Query:   182 SQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE 241
             SQY+L +PEGVHNL+ L+ K++RM+GF+V+D+YHLYPKFLEM++P IKEGK+ YVED++E
Sbjct:   255 SQYSLKQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDISE 314

Query:   242 GLESAPAALIGLFSGQNVGKQVVAVA 267
             GLESAP+AL+G++ G+NVG QVVAV+
Sbjct:   315 GLESAPSALLGVYVGRNVGNQVVAVS 340

GO:0042214 "terpene metabolic process" evidence=IDA

GO:0052579 "(+)-pulegone reductase, (+)-isomenthone as substrate, activity" evidence=IDA

GO:0052580 "(+)-pulegone reductase, (-)-menthone as substrate, activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

TAIR|locus:2028736 AT1G26320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 194/267 (72%), Positives = 229/267 (85%)

Query:     3 PISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHL--FKIQHTDVPLSYYTGIL 60
             PI G GV+KV+DS +P++ KGDL+WG+ GWEEYS+IT      FKI+HTDVPLSYYTG+L
Sbjct:    83 PIIGLGVSKVIDSGHPDYKKGDLLWGLVGWEEYSVITLTTYSHFKIEHTDVPLSYYTGLL 142

Query:    61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
             GMPGMTAY GFYEVCSPK GE VF+SAASGAVGQLVGQFAKL+GCYVVGSAGSK+KV LL
Sbjct:   143 GMPGMTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVYLL 202

Query:   121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
             K KFGFD+AFNYKEE D +AALKRYFPEGIDIYFENVGGK+LDAVL NMK+ GR+A CGM
Sbjct:   203 KTKFGFDDAFNYKEEKDFSAALKRYFPEGIDIYFENVGGKMLDAVLINMKLHGRVAVCGM 262

Query:   181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
             ISQYNL  PEGVHNL  ++ KR++++GF V D Y  YPKFL+ ++P+I+EGK+ YVED+A
Sbjct:   263 ISQYNLVDPEGVHNLPTILYKRIQLQGFGVCDFYDKYPKFLDFVLPYIREGKITYVEDIA 322

Query:   241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
             EG ES P+AL+GLF G+NVGKQ+  VA
Sbjct:   323 EGFESGPSALLGLFEGKNVGKQLFVVA 349

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148186 AT5G17000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 192/268 (71%), Positives = 229/268 (85%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
             +PI GYGV++V++S +P++ KGDL+WG+ GWEEYS+IT   H+ FKIQHTD+PLSYYTG+
Sbjct:    76 KPIFGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMTHMHFKIQHTDIPLSYYTGL 135

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQFAK++GCYVVGSAGS +KVDL
Sbjct:   136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSTEKVDL 195

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFGFD+AFNYKEE DL+AALKR FP GIDIYFENVGGK+LDAVL NM   GRIA CG
Sbjct:   196 LKTKFGFDDAFNYKEEPDLSAALKRCFPTGIDIYFENVGGKMLDAVLLNMNPHGRIAVCG 255

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL+  EGVHNL  ++ KR+R++GF V D Y  Y KFL+ ++PHIKEGK+ YVED+
Sbjct:   256 MISQYNLENQEGVHNLSNIIYKRIRIQGFAVFDFYEKYSKFLDFVLPHIKEGKITYVEDV 315

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             A+GLE  P AL+GLF G+NVGKQVV +A
Sbjct:   316 ADGLEKGPEALVGLFHGKNVGKQVVVIA 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2097795 AT3G03080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 190/267 (71%), Positives = 232/267 (86%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHL-FKIQHTDVPLSYYTGIL 60
             +PI G+ V+KV+DS +P++ KGDL+WG+ GW EYSLIT     +KIQHTDVPLSYYTG+L
Sbjct:    82 EPIYGFSVSKVIDSGHPDYKKGDLLWGLVGWGEYSLITPDFSHYKIQHTDVPLSYYTGLL 141

Query:    61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
             GMPGMTAY GFYE+CSPK GE VF+SAASGAVGQLVGQFAK++GCYVVGSAGS +KVDLL
Sbjct:   142 GMPGMTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKIMGCYVVGSAGSNEKVDLL 201

Query:   121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
             KNKFGFD+AFNYK E DLNAALKR FPEGIDIYFENVGGK+LDAVL NMK+ GRIA CGM
Sbjct:   202 KNKFGFDDAFNYKAEPDLNAALKRCFPEGIDIYFENVGGKMLDAVLLNMKLHGRIAVCGM 261

Query:   181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
             ISQYNL+  EGVHNL  ++ KR+R++GF+V D++  + KFL+ ++P+I+EGK+ YVED+ 
Sbjct:   262 ISQYNLEDQEGVHNLANVIYKRIRIKGFVVSDYFDKHLKFLDFVLPYIREGKITYVEDVV 321

Query:   241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
             EGLE+ P+AL+GLF G+NVGKQ++AVA
Sbjct:   322 EGLENGPSALLGLFHGKNVGKQLIAVA 348

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2148116 AT5G16960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 192/269 (71%), Positives = 234/269 (86%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
             +PISG+GV+KV+DS + ++ +GDL+WG  GWEEYS+IT  P+L FKI HT+ PLSYYTG+
Sbjct:    77 KPISGFGVSKVIDSGHSDYEEGDLIWGAVGWEEYSVITPIPNLHFKIHHTNFPLSYYTGL 136

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LGMPGMTAYVGFYE+C+PK G+ VF+SAASGAVGQLVGQFAKL+GCYVVGSAGSK+KVDL
Sbjct:   137 LGMPGMTAYVGFYEICTPKKGDTVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDL 196

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LKNKFGFD+AFNYKEE +L  ALKR FPEGIDIYFENVGGK+LDAV+ NM+  GRIAACG
Sbjct:   197 LKNKFGFDDAFNYKEEHNLIGALKRCFPEGIDIYFENVGGKMLDAVILNMRPHGRIAACG 256

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL  PEG++ L  +  KR+R+EGF   D++H Y +FLE ++P+IKEGK+ YVED+
Sbjct:   257 MISQYNLKNPEGIYGLSLITYKRIRIEGFNCFDYFHKYSEFLEFVVPYIKEGKIKYVEDV 316

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVAP 268
             A+GLESAPAAL+GLF G+NVGKQ+V V+P
Sbjct:   317 ADGLESAPAALVGLFHGKNVGKQLVVVSP 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153759 AT5G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 192/268 (71%), Positives = 231/268 (86%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLIT-APHL-FKIQHTDVPLSYYTGI 59
             +PISG+GVAK +DS +P +  GDL+WG  GWEEYS+IT  P   FKI HTDVPLS+YTG+
Sbjct:    84 KPISGFGVAKAIDSCHPNYKTGDLLWGRVGWEEYSVITPTPSSHFKIHHTDVPLSFYTGL 143

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LG+PG+TAYVGFYE+CSPK GE VF+SAASGAVGQLVGQFAK+ GCYVVGSA SK+KVDL
Sbjct:   144 LGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKVDL 203

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFG+DEAFNYKEE DL+AALKR FPEGIDIYFENVGGK+LDAVL NM+  GRIAACG
Sbjct:   204 LKTKFGYDEAFNYKEEHDLSAALKRCFPEGIDIYFENVGGKMLDAVLENMRTHGRIAACG 263

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL +PEGVHNL  +V KR+R++GF  ++ +  Y KFL+ I+P+++EGK+ YVED+
Sbjct:   264 MISQYNLKEPEGVHNLASIVYKRIRVQGFAAVEFFDKYSKFLDFILPYVREGKITYVEDI 323

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             A+GLE+ P+ALIGLF G+NVGKQ+VAVA
Sbjct:   324 AQGLENGPSALIGLFHGKNVGKQLVAVA 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153799 AT5G37940 [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 188/268 (70%), Positives = 228/268 (85%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLIT-APHL-FKIQHTDVPLSYYTGI 59
             +PISG+GVAK +DS +P +  GDL+WG  GWEEYS+IT  P   FKI HTDVPLS+YTG+
Sbjct:    84 KPISGFGVAKAIDSGHPNYKTGDLLWGRVGWEEYSVITPTPSSHFKIHHTDVPLSFYTGL 143

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LG+PG+TAYVGFYE+CSPK GE VF+SAASGAVGQLVGQFAK+ GCYVVGSA SK+KVDL
Sbjct:   144 LGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKVDL 203

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFG+D+AFNYKEE DL+AALKR FPEGIDIYFENVGGK+LDAVL NM+  GRIAACG
Sbjct:   204 LKTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGKMLDAVLQNMRTHGRIAACG 263

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL +PEG+HN   +V KR+R++ F  ++ +  Y KFL+ I+PH++EGK+ YVED+
Sbjct:   264 MISQYNLKEPEGLHNTATIVHKRIRVQDFAAVEFFDRYSKFLDFILPHVREGKITYVEDI 323

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             A+GLE+ P+ALIGLF G+NVGKQ+V VA
Sbjct:   324 AQGLENGPSALIGLFHGKNVGKQLVEVA 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2154041 AT5G38000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 186/268 (69%), Positives = 228/268 (85%)

Query:     2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLIT-APHL-FKIQHTDVPLSYYTGI 59
             +PISG+GVAK +DS +P +  GDL+WG  GWEEYS+IT  P   FKI HTDVPLS+YTG+
Sbjct:    84 KPISGFGVAKAIDSGHPNYKTGDLLWGRVGWEEYSVITPTPSSHFKIHHTDVPLSFYTGL 143

Query:    60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             LG+PG+TAY+GFYE+CSPK GE VF+SAASGAVGQLVGQFAK+ GCYVVGSA S++KVDL
Sbjct:   144 LGIPGLTAYIGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSEEKVDL 203

Query:   120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
             LK KFG+D+AFNYKEE DL+AALKR FPEGIDIYFENVGGK+L+AVL NM+  GRIAACG
Sbjct:   204 LKTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGKMLEAVLENMRTHGRIAACG 263

Query:   180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
             MISQYNL KPE +HN   +V KR+R++GF  ++ +  Y KFL+ I+PH++EGKL YVED+
Sbjct:   264 MISQYNLKKPEVLHNTATIVHKRIRVQGFAAVEFFDRYSKFLDFILPHVREGKLTYVEDI 323

Query:   240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
             ++GLE+ P+ALIGLF G+NVGKQ+V VA
Sbjct:   324 SQGLENGPSALIGLFHGKNVGKQLVEVA 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6WAU0	PULR_MENPI	1, ., 3, ., 1, ., 8, 1	0.7105	0.9850	0.7719	N/A	no
Q39173	P2_ARATH	1, ., 3, ., 1, ., 7, 4	0.7276	0.9925	0.7755	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.963
3rd Layer	1.3.1.81	LOW CONFIDENCE prediction!
3rd Layer	1.3.1.74	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034730001 SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_72, whole genome shotgun sequence); (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	1e-180
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	1e-150
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-140
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	1e-112
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	1e-101
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	2e-68
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	1e-59
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-45
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	6e-28
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-24
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-20
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-20
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-20
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	9e-19
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-18
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	8e-16
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	9e-16
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-15
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-15
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-14
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	6e-14
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	1e-13
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	3e-13
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	9e-13
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	8e-12
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	8e-12
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-11
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	7e-11
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-10
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-09
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-09
smart00829	287	smart00829, PKS_ER, Enoylreductase	6e-09
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-08
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-08
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	3e-08
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-07
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	4e-07
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	7e-07
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	8e-07
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	9e-07
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-06
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-06
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	5e-06
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	9e-06
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-05
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	1e-05
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	5e-05
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	2e-04
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-04
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	0.001
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	0.002
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	0.002
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	0.002
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	0.003

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score =  497 bits (1282), Expect = e-180
 Identities = 194/266 (72%), Positives = 225/266 (84%), Gaps = 1/266 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
           + I+GYGVAKV+DS NP+F  GDLVWG TGWEEYSLI     L KI HTDVPLSYY G+L
Sbjct: 73  EVITGYGVAKVVDSGNPDFKVGDLVWGFTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLL 132

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPG+TAY GFYEVC PK GE VF+SAASGAVGQLVGQ AKL GCYVVGSAGS +KVDLL
Sbjct: 133 GMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           KNK GFD+AFNYKEE DL+AALKRYFP GIDIYF+NVGGK+LDAVL NM + GRIAACGM
Sbjct: 193 KNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM 252

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL+ PEGV NL+ ++ KR++++GF+V D+ H YP+FLE +  +IKEGKL YVED+A
Sbjct: 253 ISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIA 312

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAV 266
           +GLESAP A +GLF+G N+GKQVV V
Sbjct: 313 DGLESAPEAFVGLFTGSNIGKQVVKV 338

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score =  423 bits (1090), Expect = e-150
 Identities = 186/270 (68%), Positives = 222/270 (82%), Gaps = 3/270 (1%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLI--TAPHLFKIQ-HTDVPLSYYTG 58
           Q I G+GV+KV+DS++P F  GDL+ G+TGWEEYSLI  +   L KIQ   D+PLSY+ G
Sbjct: 78  QRIEGFGVSKVVDSDDPNFKPGDLISGITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLG 137

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           +LGM G TAY GFYEVCSPK G+ VF+SAASGAVGQLVGQ AKL GCYVVGSAGS  KVD
Sbjct: 138 LLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197

Query: 119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
           LLKNK GFDEAFNYKEE DL+AALKRYFPEGIDIYF+NVGG +LDA L NMKI GRIA C
Sbjct: 198 LLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVC 257

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED 238
           GM+S  +L   +G+HNL  L+SKR+RM+GF+  D+ HL+P+FLE +  + K+GK+VY+ED
Sbjct: 258 GMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIED 317

Query: 239 MAEGLESAPAALIGLFSGQNVGKQVVAVAP 268
           M+EGLESAPAAL+GLFSG+NVGKQV+ VA 
Sbjct: 318 MSEGLESAPAALVGLFSGKNVGKQVIRVAK 347

Length = 348

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score =  396 bits (1019), Expect = e-140
 Identities = 136/265 (51%), Positives = 179/265 (67%), Gaps = 3/265 (1%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTD-VPLSYYTGI 59
           +P+ G GV +V++S +P+F  GDLV G  GW+EY+++     L K+  +  +PLS Y G+
Sbjct: 66  EPMRGGGVGEVVESRSPDFKVGDLVSGFLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGV 125

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           LGM G+TAY G  E+  PK GE V +SAA+GAVG +VGQ AKLLG  VVG AGS +K   
Sbjct: 126 LGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRW 185

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           L  + GFD A NYK   DL  ALK   P+GID+YF+NVGG++LDA L  +   GRIA CG
Sbjct: 186 LVEELGFDAAINYKTP-DLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCG 244

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
            ISQYN  +P G  NL  +++KRL M+GFIV D+   +P+ L  +   + EGKL Y ED+
Sbjct: 245 AISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDV 304

Query: 240 AEGLESAPAALIGLFSGQNVGKQVV 264
            EGLE+AP A +GLF+G+N GK VV
Sbjct: 305 VEGLENAPEAFLGLFTGKNTGKLVV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score =  325 bits (835), Expect = e-112
 Identities = 135/267 (50%), Positives = 176/267 (65%), Gaps = 3/267 (1%)

Query: 3   PISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGM 62
            + G  VAKV+ S +P F  GD+V G++GW+EY++     L K+  +  PLS Y G+LGM
Sbjct: 74  VMVGGTVAKVVASNHPGFQPGDIVVGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  ++  PK GE V +SAA+GAVG +VGQ AKL GC VVG AG  +K D L  
Sbjct: 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTE 193

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           + GFD   +YK E D   ALK   P+GID+YFENVGG++LDAVLP + +  RI  CG IS
Sbjct: 194 ELGFDAGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAIS 252

Query: 183 QYN-LDKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMA 240
           QYN  + P G   L  L++KRLR++GFIV   Y   +P+ L  +   +KEGK+ Y E + 
Sbjct: 253 QYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIV 312

Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
           +GLE+AP A IGL SG+N GK VV VA
Sbjct: 313 DGLENAPEAFIGLLSGKNFGKLVVKVA 339

Length = 340

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score =  297 bits (763), Expect = e-101
 Identities = 123/272 (45%), Positives = 166/272 (61%), Gaps = 9/272 (3%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLI---TAPHLFKI---QHTDVPLSY 55
             + G  VAKV++S+N +F  G +V    GW  +++      P L+K+      D+P S 
Sbjct: 60  DTMIGTQVAKVIESKNSKFPVGTIVVASFGWRTHTVSDGKDQPDLYKLPADLPDDLPPSL 119

Query: 56  YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
             G+LGMPG+TAY G  E+C PK GE V ++ A+GAVG LVGQ AK+ GC V+G AGS D
Sbjct: 120 ALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD 179

Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           KV  LK + GFD  FNYK    L  ALK   P+GID YF+NVGG+    VL +M   GR+
Sbjct: 180 KVAWLK-ELGFDAVFNYKTV-SLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRV 237

Query: 176 AACGMISQYNLDKPEGVHNL-MYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV 234
           A CG IS YN  +P+    +   ++ K+L+MEGFIV      +P+ L+ ++  IKEGKL 
Sbjct: 238 AVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLK 297

Query: 235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           Y E + EG E+ P A IG+  G+N GK +V V
Sbjct: 298 YREHVTEGFENMPQAFIGMLKGENTGKAIVKV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score =  214 bits (546), Expect = 2e-68
 Identities = 120/270 (44%), Positives = 159/270 (58%), Gaps = 18/270 (6%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VA+V++S+N    KG +V    GW  +S+     L K+       +PLS   G +GM
Sbjct: 62  GQQVARVVESKNVALPKGTIVLASPGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGM 121

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  E+C  K GE V ++AA+GAVG +VGQ AKL GC VVG+AGS +KV  LK 
Sbjct: 122 PGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK- 180

Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD AFNYK    L   LK+  P+G D YF+NVGG+  + V+  MK  GRIA CG IS
Sbjct: 181 KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 240

Query: 183 QYNLD-------KPEGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLV 234
            YN          PE V      + + LRMEGFIV      +  K L+ ++  + EGK+ 
Sbjct: 241 TYNRTGPLPPGPPPEIV------IYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQ 294

Query: 235 YVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
           Y E + EG E+ PAA +G+  G+N+GK +V
Sbjct: 295 YKEYVIEGFENMPAAFMGMLKGENLGKTIV 324

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score =  192 bits (489), Expect = 1e-59
 Identities = 105/277 (37%), Positives = 157/277 (56%), Gaps = 15/277 (5%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMT-GWEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q + G GV  V +S++ +F  GD+V      W+ Y+++    L K+  Q  D  LSY+ G
Sbjct: 72  QVLDGGGVGVVEESKHQKFAVGDIVTSFNWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131

Query: 59  ILGMPGMTAYVGFYE--VCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
            +G+PG+TA +G  E    +P   + + +S A+GA G L GQ  +LLGC  VVG  GS +
Sbjct: 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE 191

Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K  LLK++ GFD A NYK + ++   L+   PEG+D+YF+NVGG++ D V+  M     I
Sbjct: 192 KCQLLKSELGFDAAINYKTD-NVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHI 250

Query: 176 AACGMISQYNLDKP------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIK 229
             CG ISQYN D P      E    +  L  + +  E F+VL++   + + +  +   +K
Sbjct: 251 ILCGQISQYNKDVPYPPPLPEATEAI--LKERNITRERFLVLNYKDKFEEAIAQLSQWVK 308

Query: 230 EGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           EGKL   E + EGLE+A  A   + +G N+GKQ+V V
Sbjct: 309 EGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  155 bits (393), Expect = 2e-45
 Identities = 89/256 (34%), Positives = 134/256 (52%), Gaps = 20/256 (7%)

Query: 20  FNKGDLVWGMT--GWEEYSLITAPHLFKIQHTDVPL---SYYTGILGMPGMTAYVGFYEV 74
           F  GD V  M+   + EY ++ A H        VP         ++   G+TA +   EV
Sbjct: 82  FKVGDAVATMSFGAFAEYQVVPARHAVP-----VPELKPEVLPLLVS--GLTASIALEEV 134

Query: 75  CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE 134
              K GE V ++AA+G  GQ   Q AKL GC+V+G+  S +K + LK+  G D   NYK 
Sbjct: 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS-LGCDRPINYKT 193

Query: 135 EADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDK---PEG 191
           E DL   LK+ +P+G+D+ +E+VGG++ D  + N+ ++GR+   G IS Y       P  
Sbjct: 194 E-DLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVK 252

Query: 192 VHNL-MYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE--GLESAPA 248
              L   L++K   + GF +  +  L P+ L+ ++   + GKLV   D     GLES   
Sbjct: 253 GATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVAD 312

Query: 249 ALIGLFSGQNVGKQVV 264
           A+  L+SG+N+GK VV
Sbjct: 313 AVDYLYSGKNIGKVVV 328

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  108 bits (273), Expect = 6e-28
 Identities = 77/269 (28%), Positives = 116/269 (43%), Gaps = 15/269 (5%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMT------GWEEYSLITAPHLFKIQHTDVPLSYYTGI 59
             GV   + S    F  GD V  +       G+ EY ++ A  L  +    +        
Sbjct: 65  AAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLP-DGLSFEE-AAA 122

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           L + G+TA++  ++    K GE V +  A+G VG    Q AK LG  VV    S +K++L
Sbjct: 123 LPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLEL 182

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK + G D   NY+EE  +    +    +G+D+  + VGG    A L  +   GR+ + G
Sbjct: 183 LK-ELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIG 241

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEG-FIVLDHYHLYPKFLEMIIPHIKEGKLVYVED 238
            +S      P    NL+ L+ KRL + G  +         + L  +   +  GKL  V D
Sbjct: 242 ALS----GGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVID 297

Query: 239 MAEGLESAPAALIGLFS-GQNVGKQVVAV 266
               L  APAA   L    +  GK V+ V
Sbjct: 298 RVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 74/260 (28%), Positives = 101/260 (38%), Gaps = 36/260 (13%)

Query: 15  SENPEFNKGDLVWGMTGWE------EYSLITAPHLFKIQHTDVP--LSYYT-GILGMPGM 65
                F  GD V+GMT +       EY ++ A  L        P  LS+     L + G+
Sbjct: 76  PGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALK-----PANLSFEEAAALPLAGL 130

Query: 66  TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG 125
           TA+   +E+   K G+ V I  A+G VG    Q AK  G  V+ +A S    D L+   G
Sbjct: 131 TAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATA-SAANADFLR-SLG 188

Query: 126 FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIA-ACGMISQY 184
            DE  +Y +     AA     P G+D   + VGG+ L   L  +K  GR+    G     
Sbjct: 189 ADEVIDYTKGDFERAAA----PGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPAE 244

Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLE 244
              K  GV      V                   + L  +   ++ GKL  V D    LE
Sbjct: 245 QAAKRRGVRAGFVFVEPD---------------GEQLAELAELVEAGKLRPVVDRVFPLE 289

Query: 245 SAPAALIGLFSGQNVGKQVV 264
            A  A   L SG   GK V+
Sbjct: 290 DAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 78  KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD 137
           + GE V +  A   VG    Q AKL G  V+ +AGS+DK++  K   G D   +Y++E  
Sbjct: 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LGADYVIDYRKEDF 223

Query: 138 LNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMY 197
           +    +     G+D+  E+VG    +  L ++   GR+  CG  + Y     E   +L +
Sbjct: 224 VREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-----EAPIDLRH 278

Query: 198 LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQ 257
           +  ++L + G             L+  +  +  GKL  V D    LE A  A   L S +
Sbjct: 279 VFWRQLSILG-----STMGTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESRE 333

Query: 258 NVGKQVVAV 266
             GK V+  
Sbjct: 334 QFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 70/258 (27%), Positives = 104/258 (40%), Gaps = 26/258 (10%)

Query: 20  FNKGDLVW-GMTGWE-------EYSLITAPHLFKIQHTDVPLSYYTGI-LGMPGMTAYVG 70
              GD VW    GW        EY ++ A  L  +      +S+  G  LG+P +TAY  
Sbjct: 79  LKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPL---PDGVSFEQGAALGIPALTAYRA 135

Query: 71  FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF 130
            +     K GE V +   SGAVG    Q A+  G  V+ +A S +  +L++   G D  F
Sbjct: 136 LFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQA-GADAVF 194

Query: 131 NYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPE 190
           NY+ E   +  L     +G+D+  E +    L   L  +   GRI        Y      
Sbjct: 195 NYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVV------YGSGGLR 248

Query: 191 GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHI----KEGKLVYVEDMAEGLESA 246
           G   +  L++K   + G ++   Y   P+        I     +G L  V      LE A
Sbjct: 249 GTIPINPLMAKEASIRGVLL---YTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEA 305

Query: 247 PAALIGLFSGQNVGKQVV 264
            AA   + SG  +GK V+
Sbjct: 306 AAAHEAVESGGAIGKVVL 323

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 14/196 (7%)

Query: 31  GWEEYSLITAPHLFKIQHTDVPLSYYTGIL-GMPGMTAYVGFYEVCSPKHGECVFISAAS 89
           G+ EY ++ A +L  +      LS     L   P  TAY         K G+ V +  A 
Sbjct: 88  GFAEYVVVPADNLVPL---PDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAG 144

Query: 90  GAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEG 149
           G VG L  Q AK  G  V+ +  S +K++L K + G D   +YKEE DL   L+     G
Sbjct: 145 G-VGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKEE-DLEEELRLTGGGG 201

Query: 150 IDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF 208
            D+  + VGG   L   L  ++  GRI   G  S            L  L+ K L + G 
Sbjct: 202 ADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDD-----LRRLLFKELTIIGS 256

Query: 209 IVLDHYHLYPKFLEMI 224
                   + + L+++
Sbjct: 257 TG-GTREDFEEALDLL 271

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 83.6 bits (208), Expect = 9e-19
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 33/216 (15%)

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
            TA+   +++   K GE V I   +  VG    Q AK LG  V+ +AGS++K++  +   
Sbjct: 125 FTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-AL 183

Query: 125 GFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
           G D A NY+ E D    +K      G+D+  + VGG  L   L  +   GR+   G++  
Sbjct: 184 GADVAINYRTE-DFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLG- 241

Query: 184 YNLDKPEGVH---NLMYLVSKRLRMEGF------------IVLDHYHLYPKFLEMIIPHI 228
                  G     +L  L+ KRL + G             +          F E + P  
Sbjct: 242 -------GAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAA-------FREHVWPLF 287

Query: 229 KEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
             G++  V D    LE A  A   + S +++GK V+
Sbjct: 288 ASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL 323

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 42/274 (15%)

Query: 9   VAKVLDSENPEFNKGDLVWGMTGWE------EYSLITAPHLFKIQHTDVP--LSYYTG-I 59
           V  V  S    F  GD V+G    +      EY +     L K      P  +S+     
Sbjct: 70  VVAV-GSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKK-----PEGVSFEEAAA 123

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           L + G+TA     +    K G+ V I+ ASG VG    Q AK LG +V G   ++   +L
Sbjct: 124 LPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCSTR-NAEL 182

Query: 120 LKNKFGFDEAFNYKEE--ADLNAALKRYFPEGIDIYFENVGG---KLLDAVLPNMKIRGR 174
           +++  G DE  +Y  E    L A  ++Y     D+ F+ VG     L  A L  +K  GR
Sbjct: 183 VRS-LGADEVIDYTTEDFVALTAGGEKY-----DVIFDAVGNSPFSLYRASL-ALKPGGR 235

Query: 175 IAACG----MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKE 230
             + G     +    L  P  +        +RL+   F+   +     + LE +   ++E
Sbjct: 236 YVSVGGGPSGLLLVLLLLPLTL----GGGGRRLKF--FLAKPN----AEDLEQLAELVEE 285

Query: 231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
           GKL  V D    LE AP A   L SG+  GK V+
Sbjct: 286 GKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI 319

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 91  AVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFP-E 148
            VG    Q AK LG   V+    S++K++L K + G D   NY++E D    ++      
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAK-ELGADHVINYRDE-DFVERVRELTGGR 58

Query: 149 GIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG 207
           G+D+  + VG    L+  L  ++  GR+   G+     +  P     L  L+ K L + G
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFP-----LRDLLLKELTILG 113

Query: 208 FIVLDHYHLYPKFLEMII 225
            +       + + LE++ 
Sbjct: 114 SLGGGREE-FEEALELLA 130

Length = 131

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 75.6 bits (187), Expect = 8e-16
 Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 66  TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG 125
           TAY         + GE V +  A+G VG    Q AK LG  V+ +A S++K+ L +   G
Sbjct: 126 TAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALG 184

Query: 126 FDEAFNYKEEADLNAALK-RYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI----AACGM 180
            D   +Y++  DL   +K      G+D+ ++ VGG + +A L ++   GR+     A G 
Sbjct: 185 ADHVIDYRDP-DLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGE 243

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGF----IVLDHYHLYPKFLEMIIPHIKEGKLVYV 236
           I Q          NL+ L  K + + G            L    L  +   + EGK+   
Sbjct: 244 IPQIPA-------NLLLL--KNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPH 294

Query: 237 EDMAEGLESAPAALIGLFSGQNVGKQVV 264
                 LE A  AL  L   +  GK V+
Sbjct: 295 VSAVFPLEQAAEALRALADRKATGKVVL 322

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 36/287 (12%)

Query: 6   GYGVAKVLDS---ENPEFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVPLSYYTG- 58
           G+  A  +++      +F  GD V G+T   G+ E   + A  +F +      +S+    
Sbjct: 61  GFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPLPD---GMSFEEAA 117

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKV 117
              +  +TAY   +E+ + + G+ V + +A+G VG   GQ  K +    VVG+A S  K 
Sbjct: 118 AFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKH 176

Query: 118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
           + LK   G     +Y+ + D    +K+  PEG+DI  + +GG+        +K  GR+  
Sbjct: 177 EALKEN-GVTHVIDYRTQ-DYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVV 234

Query: 178 CGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY------------HLYPK------ 219
            G  +    +K     +   L  K         +                L+ +      
Sbjct: 235 YGAANLVTGEKR----SWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTE 290

Query: 220 FLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
            ++ ++   +EGK+    D     E    A+  L S +N+GK V+  
Sbjct: 291 VMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 47/271 (17%)

Query: 20  FNKGDLVWGMTG--------WEEYSLITA-------PHLFKIQHTDVPLSYYTGILGMPG 64
           F  GD V+G  G          EY+++ A        +L   +   +PL          G
Sbjct: 79  FRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPL---------VG 129

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+ G  +  + + G+ V I   +G VG +  Q AK  G  V  +A S +K    +   
Sbjct: 130 ITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-SL 187

Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
           G D    Y+E        +     G D+ F+ VGG+ LDA    + + GR+ +    + +
Sbjct: 188 GADPIIYYRETVV-EYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGATH 246

Query: 185 NLDKP--------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKL-VY 235
           +L  P         GV  L+ L++   R        H+    + L      ++ G+L   
Sbjct: 247 DL-APLSFRNATYSGVFTLLPLLTGEGR-------AHHG---EILREAARLVERGQLRPL 295

Query: 236 VEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           ++     LE A AA   L SG   GK V+ V
Sbjct: 296 LDPRTFPLEEAAAAHARLESGSARGKIVIDV 326

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 8/181 (4%)

Query: 6   GYGVAKVLDSENPEFNKGDLV-WGMTG--WEEYSLITAPHLFKIQHTDVPLSYYTGILGM 62
           G GV + +      F  GD V +      + EY ++ A  L K+    +       +L +
Sbjct: 62  GAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRVVPASRLVKLP-DGISDETAAALL-L 119

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
            G+TA+    E    K G+ V + AA+G VG L+ Q+AK LG  V+G+  S++K +L + 
Sbjct: 120 QGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA 179

Query: 123 KFGFDEAFNYKEEADLNAALKRY-FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
             G D   NY++E D    ++      G+D+ ++ VG    +  L +++ RG + + G  
Sbjct: 180 A-GADHVINYRDE-DFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNA 237

Query: 182 S 182
           S
Sbjct: 238 S 238

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
            G+TAY   ++    + G  + I+  +G VG    Q AK  G  V+ +  SK   + +K 
Sbjct: 125 AGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVK- 182

Query: 123 KFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIA 176
             G D   +Y +E D+   +K      G+D   + VGG+   A+ P +   G + 
Sbjct: 183 SLGADHVIDYNDE-DVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLV 236

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 22/270 (8%)

Query: 8   GVAKVLDSENPEFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPG 64
           G    +      +  GD V  +    G+ EY  + A  +  +      LS       +P 
Sbjct: 67  GEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPE---GLSLVEAA-ALPE 122

Query: 65  --MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
              T +   ++    K GE V I   +  +G    Q AK  G  V  +AGS +K      
Sbjct: 123 TFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA-ACE 181

Query: 123 KFGFDEAFNYKEEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
             G D A NY+EE D    +K     +G+D+  + VGG  L+  +  + + GRI   G  
Sbjct: 182 ALGADIAINYREE-DFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGF- 239

Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGFI-----VLDHYHLYPKFLEMIIPHIKEGKLVYV 236
                   +   +L  L++KRL + G       V +   +  +  E + P +  G++  V
Sbjct: 240 ----QGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPV 295

Query: 237 EDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
            D    LE A  A   + SG ++GK V+ V
Sbjct: 296 IDKVFPLEDAAQAHALMESGDHIGKIVLTV 325

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 18/269 (6%)

Query: 8   GVAKVLDSENPEFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPG 64
           G  + + S+   F +GD V  +    G+ EY++    H+  I            I     
Sbjct: 68  GYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIP-QGYTFEEAAAIPEA-F 125

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+    +    K G+ V I A +  VG    Q A+  G   + +  S++KVD  K   
Sbjct: 126 LTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-L 184

Query: 125 GFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
                  Y +E      +K+    +G+++  + VGG  L      + + G+    G +  
Sbjct: 185 AAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGG 244

Query: 184 YNLDKPEGVHNLMYLVSKRLRMEGFIVL----DHY--HLYPKFLEMIIPHIKEGKLVYVE 237
             ++K     NL+ L+ KR  +  F  L    D Y   L   F   ++P+++EG++  + 
Sbjct: 245 AKVEKF----NLLPLLRKRASII-FSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIV 299

Query: 238 DMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           D    LE    A   L   +N+GK V+ V
Sbjct: 300 DRTYPLEEVAEAHTFLEQNKNIGKVVLTV 328

Length = 334

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 29/194 (14%)

Query: 12  VLDSENPEFNKGDLV------WGMT---GWEEYSLITAPHLFKIQHTDVP--LS-YYTGI 59
           V+ S++P F +GD V       GM    G+ EY  + A  +  +     P  LS     I
Sbjct: 69  VVSSDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPL-----PEGLSLREAMI 123

Query: 60  LGMPGMTAYVGFYE----VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
           LG  G TA +  +       +P+ G  V ++ A+G VG +       LG  VV   G ++
Sbjct: 124 LGTAGFTAALSVHRLEDNGQTPEDGP-VLVTGATGGVGSIAVAILAKLGYTVVALTGKEE 182

Query: 116 KVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRG 173
           + D LK   G  E  + ++  +      LK  +   ID     VGG +L  +L   K  G
Sbjct: 183 QADYLK-SLGASEVLDREDLLDESKKPLLKARWAGAID----TVGGDVLANLLKQTKYGG 237

Query: 174 RIAACGMISQYNLD 187
            +A+CG  +   L 
Sbjct: 238 VVASCGNAAGPELT 251

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 66.8 bits (164), Expect = 9e-13
 Identities = 78/289 (26%), Positives = 117/289 (40%), Gaps = 67/289 (23%)

Query: 12  VLDSENPEFNKGDLV----W--GMTGWEEYSLITAPHLFKIQHTDVP----------LSY 55
           V+ SE+P F +GD V    +  G++    YS          Q+  VP          LS 
Sbjct: 68  VVSSEDPRFREGDEVIVTGYGLGVSHDGGYS----------QYARVPADWLVPLPEGLSL 117

Query: 56  YTG-ILGMPGMTAYVGFYEV----CSPKHGECVFISAASGAVGQL-VGQFAKLLGCYVVG 109
                LG  G TA +    +     +P+ G  V ++ A+G VG L V   +KL G  VV 
Sbjct: 118 REAMALGTAGFTAALSVMALERNGLTPEDGP-VLVTGATGGVGSLAVAILSKL-GYEVVA 175

Query: 110 SAGSKDKVDLLKNKFGFDEAFNYKEEADLNAAL-KRYFPEGIDIYFENVGGKLLDAVLPN 168
           S G  ++ D LK + G  E  + ++ +     L K  +   +D     VGG  L  VL  
Sbjct: 176 STGKAEEEDYLK-ELGASEVIDREDLSPPGKPLEKERWAGAVD----TVGGHTLANVLAQ 230

Query: 169 MKIRGRIAACGMISQYNLD-----------KPEGVHNLMYLVSKRLRMEGFIVLDHYHLY 217
           +K  G +AACG+    +L               G+ ++   ++ R      +  D   L 
Sbjct: 231 LKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATD---LK 287

Query: 218 PKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           P+ LE I   I              LE  P AL  + +GQ+ G+ VV V
Sbjct: 288 PRNLESITREI-------------TLEELPEALEQILAGQHRGRTVVDV 323

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 64.1 bits (157), Expect = 8e-12
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 13/204 (6%)

Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
           G+TA+   + +   K G+ V +    G V     QFAK  G  V+ ++ S +K++  K  
Sbjct: 145 GLTAWNALFGLGPLKPGDTVLVQGTGG-VSLFALQFAKAAGARVIATSSSDEKLERAK-A 202

Query: 124 FGFDEAFNYKEEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
            G D   NY+   D    + +     G+D   E  G   L   +  +   G I+  G +S
Sbjct: 203 LGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLS 262

Query: 183 QYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEG 242
                  E    L+ L++K   + G  V         F  M    I+  ++  V D    
Sbjct: 263 -----GFEAPVLLLPLLTKGATLRGIAVGSRAQ----FEAMNR-AIEAHRIRPVIDRVFP 312

Query: 243 LESAPAALIGLFSGQNVGKQVVAV 266
            E A  A   L SG + GK V+ V
Sbjct: 313 FEEAKEAYRYLESGSHFGKVVIRV 336

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 23/236 (9%)

Query: 31  GWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
           G+ EY  +    L K+   +V       +      TA     +    K G+ V ++ A G
Sbjct: 117 GFAEYVKVPERSLVKL-PDNVSDESAA-LAACVVGTAVHAL-KRAGVKKGDTVLVTGAGG 173

Query: 91  AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPE 148
            VG    Q AK LG  V+    S +K+ +LK        +   + E+       K     
Sbjct: 174 GVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVK-----KLG--- 225

Query: 149 GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF 208
           G D+  E VG   ++  L ++   GR+   G     N+           L+ K +R+ G 
Sbjct: 226 GADVVIELVGSPTIEESLRSLNKGGRLVLIG-----NVTPDPAPLRPGLLILKEIRIIGS 280

Query: 209 IVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
           I      +  + L++    +KEGK+  V D    LE    AL  L SG+ VG+ V+
Sbjct: 281 ISATKADVE-EALKL----VKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 11/205 (5%)

Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
            +T    F        GE + I  A+G  G +  Q A+L G  +  +A S DK++ LK +
Sbjct: 106 FLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-Q 163

Query: 124 FGFDEAFNYKEEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGR---IAACG 179
            G     NY EE D    + R     G+D+    + G+ +   L  +   GR   IA   
Sbjct: 164 LGVPHVINYVEE-DFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTA 222

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           + S  ++D    + N     S  LR      LD   +     EM +  ++EG+L      
Sbjct: 223 LKSAPSVDL-SVLSNNQSFHSVDLRKLLL--LDPEFIADYQAEM-VSLVEEGELRPTVSR 278

Query: 240 AEGLESAPAALIGLFSGQNVGKQVV 264
               +    A   L   +N+GK VV
Sbjct: 279 IFPFDDIGEAYRYLSDRENIGKVVV 303

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 60/212 (28%), Positives = 85/212 (40%), Gaps = 13/212 (6%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           L M  +TAY    E+   + G+ V I+AAS +VG    Q A   G  V+ +  + +K D 
Sbjct: 125 LWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDA 184

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRY-FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
           L    G        EE DL A + R    +G+D+ F+ VGG     +   +   G +   
Sbjct: 185 LLAL-GAAHVIVTDEE-DLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVY 242

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKE----GKLV 234
           G +S      P         + K L   G+  LD   L P+     I  I +    G L 
Sbjct: 243 GALSGEPTPFPLKAA-----LKKSLTFRGY-SLDEITLDPEARRRAIAFILDGLASGALK 296

Query: 235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
            V D     +    A   L SGQ +GK VV  
Sbjct: 297 PVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 25/222 (11%)

Query: 51  VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS 110
           +P++Y         +TAY    ++   + GE V I AA+G VGQ   Q A+ LG  V  +
Sbjct: 89  LPVAY---------LTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFAT 139

Query: 111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNM 169
            GS++K + L+   G  +      +      + R     G+D+   ++ G+LL A    +
Sbjct: 140 VGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCL 199

Query: 170 KIRGRIAACG---MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPK----FLE 222
              GR    G   ++S   L     + N+ +            +       P+     L 
Sbjct: 200 APFGRFVEIGKRDILSNSKLGMRPFLRNVSF--------SSVDLDQLARERPELLRELLR 251

Query: 223 MIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
            ++  ++ G L  +        S   A   + SG+++GK V+
Sbjct: 252 EVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL 293

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 71/287 (24%), Positives = 106/287 (36%), Gaps = 48/287 (16%)

Query: 8   GVAKVLD--SENPEFNKGDLVW-GMTG---WEEYSLITAPHLFKIQHTDVPLSYYTGILG 61
           GV +V+   S       GD V     G   W  ++++ A  L K+   DV        L 
Sbjct: 71  GVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVP-NDVDPEQA-ATLS 128

Query: 62  MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
           +   TAY    +    + G+ V  + A+ AVGQ V Q AKLLG   +     +  ++ LK
Sbjct: 129 VNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELK 188

Query: 122 N---KFGFDEAFNYKEEADLNAA--LKRYFPEGIDIYFENVGGK----LLDAVLPNMKIR 172
                 G D     +E   L A   LK        +    VGGK    L   + P     
Sbjct: 189 ERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPG---- 244

Query: 173 GRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY---------HLYPKFLEM 223
           G +   G +S     +P  V     L+ K + + GF +              +  +  E+
Sbjct: 245 GTMVTYGGMS----GQPVTV-PTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAEL 299

Query: 224 IIPHIKEGKLVYV------EDMAEGLESAPAALIGLFSGQNVGKQVV 264
               I+EGKL         +D  E  + A A  +    G   GKQV+
Sbjct: 300 ----IREGKLKAPPVEKVTDDPLEEFKDALANALKGGGG---GKQVL 339

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           +   G TA +G  ++ +   G+ V ++AA+G +G L+ Q AK  G  VVG+AG   K  L
Sbjct: 124 VVHDGRTA-LGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTAL 182

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           ++   G D A +Y      +   +     G+ +  + VGG +  A L  +   GR    G
Sbjct: 183 VR-ALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYG 241

Query: 180 MIS 182
             S
Sbjct: 242 WAS 244

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 55.1 bits (134), Expect = 6e-09
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 66  TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG 125
           TAY    ++   + GE V I AA+G VGQ   Q A+ LG  V  +AGS +K D L+   G
Sbjct: 90  TAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLARHLGAEVFATAGSPEKRDFLRA-LG 148

Query: 126 FDEA 129
             + 
Sbjct: 149 IPDD 152

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 47/294 (15%)

Query: 4   ISGYGVAKV---LDSENPEFNKGDLVWGMT-----------GWEEYSLITAPHLFKIQHT 49
           I G   A     + S    F  GD V G              ++EY +  A    KI   
Sbjct: 57  ILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDN 116

Query: 50  DVPLSYYTG-ILGMPGMTAYVGFY----------EVCSPKHGECVFISAASGAVGQLVGQ 98
              +S+     L +  +TA +  +          +      G+ V I   S +VG L  Q
Sbjct: 117 ---ISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQ 173

Query: 99  FAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK---EEADLNAALKRYFPEGIDIYFE 155
            AKL G  V+ +A  K+  DL+K   G D  F+Y       D+ AA        +D    
Sbjct: 174 LAKLAGYKVITTASPKNF-DLVK-SLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST 231

Query: 156 NVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH---NLMYLVSKRLRMEGFIVLD 212
               +L    L      G++ +   + +   +  +GV     L Y V   +  +     +
Sbjct: 232 PESAQLCAEALGRSG-GGKLVSLLPVPE-ETEPRKGVKVKFVLGYTVFGEIPEDR----E 285

Query: 213 HYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVV 264
              ++ K+L      ++EGKL    V  +  GLE     L  L  G+  G+++V
Sbjct: 286 FGEVFWKYLP---ELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLV 336

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 20/153 (13%)

Query: 31  GWEEYSLITAPHLFKIQHTDVPLSYYTGI---LGMPGMTAYVGFYEV-CSPKHGECVFIS 86
           G+ EY ++   +LFKI     P S    +   L +  +TAY         P  GE V + 
Sbjct: 117 GYAEYIVVPEKNLFKI-----PDSISDELAASLPVAALTAYHALKTAGLGP--GETVVVF 169

Query: 87  AASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF 146
            ASG  G    Q AK++G  V+  +        LK +FG DE  +Y E  +    + +  
Sbjct: 170 GASGNTGIFAVQLAKMMGAEVIAVSRKDW----LK-EFGADEVVDYDEVEEKVKEITKMA 224

Query: 147 PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
               D+   ++G    D  L  +   GR+   G
Sbjct: 225 ----DVVINSLGSSFWDLSLSVLGRGGRLVTFG 253

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 21/158 (13%)

Query: 31  GWEEYSLITAPHLFKIQH--TDV-----PLSYYTGILGMPGMTAYVGFYEVCSPKHGECV 83
           G+ EY+++ A + + +    +DV     P SY T    M          E      GE V
Sbjct: 132 GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTA-ENM---------LERAGVGAGETV 181

Query: 84  FISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALK 143
            ++ ASG VG  + Q AK  G  V+  AG   K + ++   G D       +A L A  K
Sbjct: 182 LVTGASGGVGSALVQLAKRRGAIVIAVAG-AAKEEAVR-ALGADTV--ILRDAPLLADAK 237

Query: 144 RYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
               E +D+  + VGG L   +L  ++  GR    G I
Sbjct: 238 ALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAI 275

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 24/267 (8%)

Query: 8   GVAKVLD--SENPEFNKGDLV----WGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILG 61
           GV  V++  S       G  V       T W+EY +  A  L  +  +          + 
Sbjct: 64  GVGVVVEVGSGVSGLLVGQRVLPLGGEGT-WQEYVVAPADDLIPVPDSISDEQAAMLYI- 121

Query: 62  MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
            P +TA++   E      G+ V  +AA+ AVG+++ Q AKLLG   +      ++V+ LK
Sbjct: 122 NP-LTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK 180

Query: 122 NKFGFDEAFNYKEEADLNAALK-RYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
              G DE  +     DL   +K      G  +  + VGG+    +  +++  G +   G+
Sbjct: 181 AL-GADEVIDS-SPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGL 238

Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY------HLYPKFLEMIIPHIKEGKLV 234
           +S   +  P  V      + K + + GF  L  +          +    +I  ++ G L 
Sbjct: 239 LSGEPVPFPRSV-----FIFKDITVRGFW-LRQWLHSATKEAKQETFAEVIKLVEAGVLT 292

Query: 235 YVEDMAEGLESAPAALIGLFSGQNVGK 261
                   LE    A+         GK
Sbjct: 293 TPVGAKFPLEDFEEAVAAAEQPGRGGK 319

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 25/241 (10%)

Query: 26  VWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFI 85
             G  G+ EY ++ A ++ KI    + L      L   G+T Y    +  + K G+ V +
Sbjct: 118 TDG--GYAEYVVVPARYVVKIPE-GLDL-AEAAPLLCAGITTYRAL-KKANVKPGKWVAV 172

Query: 86  SAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRY 145
             A G +G +  Q+AK +G  V+    S++K++L K K G D   N  +   L A     
Sbjct: 173 VGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSSDSDALEAV---- 226

Query: 146 FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM 205
             E  D   + VG   L+  L  ++  G +   G+        P  +     L+ K + +
Sbjct: 227 -KEIADAIIDTVGPATLEPSLKALRRGGTLVLVGLP----GGGPIPLLPAFLLILKEISI 281

Query: 206 EGFIVLDHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEGLESAPAALIGLFSGQNVGKQV 263
            G             LE  +    EGK+    +E +   L+    A   +  G+  G+ V
Sbjct: 282 VG-----SLVGTRADLEEALDFAAEGKIKPEILETI--PLDEINEAYERMEKGKVRGRAV 334

Query: 264 V 264
           +
Sbjct: 335 I 335

Length = 339

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 37/191 (19%)

Query: 12  VLDSENPEFNKGDLV------WGMT---GWEEYSLITAPHLFKIQHTDVPLSYYTG---- 58
           V++S +P F  GD V       G++   G+ EY+ + A  +       VPL    G    
Sbjct: 69  VVESNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWV-------VPLP--KGLTLK 119

Query: 59  ---ILGMPGMTAYVGFYEV----CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA 111
              ILG  G TA +  + +     +P+ G  V ++ A+G VG L       LG  VV S 
Sbjct: 120 EAMILGTAGFTAALSIHRLEENGLTPEQGP-VLVTGATGGVGSLAVSILAKLGYEVVAST 178

Query: 112 GSKDKVDLLKNKFGFDEAFNYKEEAD--LNAALKRYFPEGIDIYFENVGGKLLDAVLPNM 169
           G  D  D LK K G  E    +E  +  +    K+ +   +D     VGGK L  +L  +
Sbjct: 179 GKADAADYLK-KLGAKEVIPREELQEESIKPLEKQRWAGAVD----PVGGKTLAYLLSTL 233

Query: 170 KIRGRIAACGM 180
           +  G +A  G+
Sbjct: 234 QYGGSVAVSGL 244

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 44/176 (25%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 6   GY-GVAKVLD--SENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVP--LSYYTGIL 60
           GY  V +V++  S    F  GD V+      E  ++ A  L       +P  L      L
Sbjct: 25  GYSSVGRVVEVGSGVTGFKPGDRVFCFGPHAERVVVPANLLVP-----LPDGLPPERAAL 79

Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
                TA  G      P+ GE V +    G VG L  Q AK  G   V        VD  
Sbjct: 80  TALAATALNGV-RDAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREV------VGVDPD 131

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG-GKLLDAVLPNMKIRGRI 175
             +    EA    +              G D+  E  G    L+  L  ++ RGR+
Sbjct: 132 AARRELAEALGPADPV-AADTADEIGGRGADVVIEASGSPSALETALRLLRDRGRV 186

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 20  FNKGDLVWGMTGWEE---YSLITAPHLFKIQHTDVPLSYYTGI-LGMPGMTAYVGFYEVC 75
           F  GD VWG         ++        ++      LS+     L   G+TA+     V 
Sbjct: 95  FEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVG 154

Query: 76  ----SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN 131
                   G+ V I   SG VG    Q  K  G +V  +  S D + L+K   G D+  +
Sbjct: 155 GLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTC-STDAIPLVK-SLGADDVID 212

Query: 132 YKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMK 170
           Y  E       +R      D+  + VGG      L  +K
Sbjct: 213 YNNEDFEEELTER---GKFDVILDTVGGDTEKWALKLLK 248

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           L + G+TA         P  G  V ++ ASG VG+   Q A L G +VV   GS  + + 
Sbjct: 114 LPVAGVTALRALRRG-GPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEG 172

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           L+     +      E +             +D+  ++VGG  L   L  +   G + + G
Sbjct: 173 LRELGAAEVVVGGSELSG----------APVDLVVDSVGGPQLARALELLAPGGTVVSVG 222

Query: 180 MIS 182
             S
Sbjct: 223 SSS 225

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 17/146 (11%)

Query: 20  FNKGDLVWGMT---GWEEYSLITAPHLFKI-QHTDVPLSYYTGILGMP--GMTAYVGFYE 73
           F  GD V  +T   G  EY  + A +L  + +  D         + +    +TAY   + 
Sbjct: 79  FEVGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDA-----AEAVCLVLNYVTAYQMLHR 133

Query: 74  VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK 133
                 G+ V I  ASG VGQ + + A L G  V G+A S+     L+         +Y 
Sbjct: 134 AAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTA-SERNHAALRELGA--TPIDY- 189

Query: 134 EEADLNAALKRYFPEGIDIYFENVGG 159
                +       P G+D+ F+ VGG
Sbjct: 190 --RTKDWLPAMLTPGGVDVVFDGVGG 213

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 89  SGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFP 147
           +G +G L    AKLLG   V+    S ++++L K   G D   N  E+      L+    
Sbjct: 177 AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGG 236

Query: 148 EGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRME 206
            G D+  E VG    LD  L  ++  G +   G+         +       +VSK L + 
Sbjct: 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG-----GEDIPLPAGLVVSKELTLR 291

Query: 207 GFIVLDHYHLYPKFLEMIIPH-IKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV 264
           G +       + + L+++    I   KL+        L+ A  A       +    +VV
Sbjct: 292 GSLRPSGREDFERALDLLASGKIDPEKLI---THRLPLDDAAEAYELFADRKEEAIKVV 347

Length = 350

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
           G+T Y    +    K  E     AA+G VG +  Q+AK LG  ++G+ GS  K    K  
Sbjct: 125 GLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKA 184

Query: 124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRG 173
            G  +  NY+EE  +    +    + + + +++VG    +A L  ++ RG
Sbjct: 185 -GAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRG 233

Length = 327

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 78  KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD----EAFNYK 133
           K GE V ++ A G VG    Q AK LG  V+    S+ K  ++  K+         F+  
Sbjct: 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS-KYADYVIVGSKFS-- 217

Query: 134 EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH 193
           EE       K+    G DI  E VG   L+  L ++ + G+I   G     N+D P   +
Sbjct: 218 EEV------KKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIG-----NVD-PSPTY 263

Query: 194 NLM--YLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALI 251
           +L   Y++ K + + G I      +  + L++    + EGK+  V      L     AL 
Sbjct: 264 SLRLGYIILKDIEIIGHISATKRDV-EEALKL----VAEGKIKPVIGAEVSLSEIDKALE 318

Query: 252 GLFSGQNVGKQVV 264
            L     +GK +V
Sbjct: 319 ELKDKSRIGKILV 331

Length = 334

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 19  EFNKGDLVWGMTG---------WEEYSLITAPHLFKIQHTDVPLSYYTGILG-MPGM--T 66
            F  G  V    G         + EY+L+    ++ I   D  LS+    L  +P    T
Sbjct: 75  TFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAI---DSDLSW--AELAALPETYYT 129

Query: 67  AYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF 126
           A+   +     + G+ + I   + +VG    + AK LG  V  +  S ++  LLK + G 
Sbjct: 130 AWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGA 188

Query: 127 DEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           DE     ++  +   L+   P G D   E VG   L   L +++  G +   G++ 
Sbjct: 189 DEVV--IDDGAIAEQLRAA-PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLG 241

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 74/295 (25%), Positives = 111/295 (37%), Gaps = 79/295 (26%)

Query: 12  VLDSENPEFNKGDLV-----------WGMTGWEEYSLITAPHLFKIQHTDVPLSY----- 55
           V++S +P F  GD V           WG  G+ + + + A  L       VPL       
Sbjct: 69  VVESSSPRFKPGDRVVLTGWGVGERHWG--GYAQRARVKADWL-------VPLPEGLSAR 119

Query: 56  YTGILGMPGMTAYVGFYEVC---------SPKHGECVFISAASGAVGQL-VGQFAKLLGC 105
               +G  G TA +     C         +P  G  V ++ A+G VG + V   A+L G 
Sbjct: 120 QAMAIGTAGFTAML-----CVMALEDHGVTPGDGP-VLVTGAAGGVGSVAVALLARL-GY 172

Query: 106 YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAAL-KRYFPEGIDIYFENVGGKLLDA 164
            VV S G  ++ D L++  G  E  +  E ++    L K  +   +D     VGG  L  
Sbjct: 173 EVVASTGRPEEADYLRS-LGASEIIDRAELSEPGRPLQKERWAGAVD----TVGGHTLAN 227

Query: 165 VLPNMKIRGRIAACGMISQYNLDKPE-------------GVHNLMYLVSKRLRMEGFIVL 211
           VL   +  G +AACG+      D P              G+ ++M  + +R      +  
Sbjct: 228 VLAQTRYGGAVAACGLAG--GADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLAR 285

Query: 212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           D   L P  LE +   I              L   P A   + +GQ  G+ VV V
Sbjct: 286 D---LDPALLEALTREI-------------PLADVPDAAEAILAGQVRGRVVVDV 324

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA +G  E    +  + V  +AA+ A+G+++ +  K  G  V+     K++VDLLK K 
Sbjct: 130 LTA-LGMLETAREEGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KI 187

Query: 125 GFDEAFNYKEE---ADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
           G +   N  +     DL   + +       I+F+ VGG L   +L  M     +   G +
Sbjct: 188 GAEYVLNSSDPDFLEDLKELIAK---LNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYL 244

Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGF 208
           S   LD+P    + + L+ K   +EGF
Sbjct: 245 SG-KLDEPI---DPVDLIFKNKSIEGF 267

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
           G+T Y    +    K G+ V IS A G +G L  Q+AK +G  V+      +K++L K +
Sbjct: 151 GVTVYKAL-KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-E 208

Query: 124 FGFDEAFNYKEEADLNAALK 143
            G D   ++K+  D+ A  +
Sbjct: 209 LGADAFVDFKKSDDVEAVKE 228

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 37/213 (17%)

Query: 78  KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK----------VDLLKNKFGFD 127
           K G+ V I  A+G +G    Q A+  G   V    S +K            + +N FG  
Sbjct: 188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRSLGAEAVIDRNDFGHW 247

Query: 128 --------EAFN--YKEEADLNAAL-KRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIA 176
                   +A     K        + +    E  DI FE+ G       +   +  G + 
Sbjct: 248 GRLPDHNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVYVCRRGGMVV 307

Query: 177 ACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPK---FLEMIIPHIKEGKL 233
            CG  + YN D     ++  YL  ++ R++G     H+    +      ++     +G++
Sbjct: 308 ICGGTTGYNHD-----YDNRYLWMRQKRIQG----SHFANLREAYEANRLVA----KGRI 354

Query: 234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
                    LE    A   +    + G   V V
Sbjct: 355 DPTLSKTYPLEEIGQAHQDVHRNHHQGNVAVLV 387

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 77  PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEE 135
              G+ V +  A G +G L  Q+ K+LG   V+      +K+ + + + G D+  N KEE
Sbjct: 157 ITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR-ELGADDTINPKEE 214

Query: 136 ADLNAALKRYFPEGIDIYFENVG 158
            D+    +     G D+  E  G
Sbjct: 215 -DVEKVRELTEGRGADLVIEAAG 236

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 31  GWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
           G+ EY L+    L ++      LS     L  P   A     E    + G+ V +    G
Sbjct: 119 GFAEYVLVPEESLHELPEN---LSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFG-PG 174

Query: 91  AVGQLVGQFAKLLGCYVVGSAGSKDKVDL-LKNKFGFDEAFNYKEEADLNAALKRYFPEG 149
            +G L  Q AKL G  VV     KD+V L +  + G D A N  EE       +    +G
Sbjct: 175 PIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD-AVNGGEEDLAELVNEITDGDG 233

Query: 150 IDIYFENVGG-KLLDAVLPNMKIRGRIAACGM 180
            D+  E  G    L+  L  ++  GRI   G+
Sbjct: 234 ADVVIECSGAVPALEQALELLRKGGRIVQVGI 265

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 28  GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
           G + + EY+++    L KI   D PL     +LG    T           + G+ V +  
Sbjct: 136 GCSTFAEYTVVHEISLVKIDP-DAPLEK-ACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG 193

Query: 88  ASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF 146
             G VG    Q AK  G   ++    + +K++L K KFG     N KE  D+  A+    
Sbjct: 194 L-GGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK-KFGATHFVNPKEVDDVVEAIVELT 251

Query: 147 PEGIDIYFENVG 158
             G D  FE VG
Sbjct: 252 DGGADYAFECVG 263

Length = 366

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 77  PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEA 136
              G+ V +  A G +G  V Q AK  G  V+      ++++  + + G D+  N  +E 
Sbjct: 157 VTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVGDE- 213

Query: 137 DLNAALKRYFP-EGIDIYFENVG 158
           D+ A L+     EG D+  +  G
Sbjct: 214 DVAARLRELTDGEGADVVIDATG 236

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.98
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.98
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.98
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.98
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.98
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.98
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.97
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.97
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.97
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.97
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.97
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.97
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.97
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.96
PLN02702	364	L-idonate 5-dehydrogenase	99.96
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.96
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.96
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.96
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.95
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.8
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.66
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.34
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.78
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.58
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.53
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.47
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	98.46
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.38
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.3
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.27
PLN02494	477	adenosylhomocysteinase	98.26
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.21
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.15
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.15
PRK08324	681	short chain dehydrogenase; Validated	98.13
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.11
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.1
PRK05693	274	short chain dehydrogenase; Provisional	98.07
PRK12742	237	oxidoreductase; Provisional	98.07
PRK06182	273	short chain dehydrogenase; Validated	98.04
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.01
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.0
PRK08265	261	short chain dehydrogenase; Provisional	97.98
PRK05993	277	short chain dehydrogenase; Provisional	97.94
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.92
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.91
PRK08339	263	short chain dehydrogenase; Provisional	97.88
PRK05872	296	short chain dehydrogenase; Provisional	97.85
PRK06198	260	short chain dehydrogenase; Provisional	97.83
PRK07109	334	short chain dehydrogenase; Provisional	97.82
PRK06057	255	short chain dehydrogenase; Provisional	97.81
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.76
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.75
PRK07060	245	short chain dehydrogenase; Provisional	97.74
PRK06484	520	short chain dehydrogenase; Validated	97.74
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.74
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.74
PLN03209	576	translocon at the inner envelope of chloroplast su	97.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.72
PRK07825	273	short chain dehydrogenase; Provisional	97.71
PRK12829	264	short chain dehydrogenase; Provisional	97.71
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.7
PRK06139	330	short chain dehydrogenase; Provisional	97.7
PRK12939	250	short chain dehydrogenase; Provisional	97.67
PLN02780	320	ketoreductase/ oxidoreductase	97.66
PRK07576	264	short chain dehydrogenase; Provisional	97.66
PRK06196	315	oxidoreductase; Provisional	97.66
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	97.65
PRK07806	248	short chain dehydrogenase; Provisional	97.65
PRK08017	256	oxidoreductase; Provisional	97.64
PRK06949	258	short chain dehydrogenase; Provisional	97.63
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.63
PRK07062	265	short chain dehydrogenase; Provisional	97.63
PRK07063	260	short chain dehydrogenase; Provisional	97.62
PRK08177	225	short chain dehydrogenase; Provisional	97.61
PRK05866	293	short chain dehydrogenase; Provisional	97.61
PRK05867	253	short chain dehydrogenase; Provisional	97.61
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.6
PRK06500	249	short chain dehydrogenase; Provisional	97.59
PRK07890	258	short chain dehydrogenase; Provisional	97.59
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.57
PRK05854	313	short chain dehydrogenase; Provisional	97.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.56
PRK07831	262	short chain dehydrogenase; Provisional	97.55
PRK07478	254	short chain dehydrogenase; Provisional	97.55
PRK06841	255	short chain dehydrogenase; Provisional	97.55
PRK07326	237	short chain dehydrogenase; Provisional	97.54
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.54
PRK06180	277	short chain dehydrogenase; Provisional	97.54
PRK07832	272	short chain dehydrogenase; Provisional	97.53
PRK05717	255	oxidoreductase; Validated	97.51
PRK05884	223	short chain dehydrogenase; Provisional	97.51
PRK06101	240	short chain dehydrogenase; Provisional	97.51
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.51
PRK07814	263	short chain dehydrogenase; Provisional	97.51
PRK07024	257	short chain dehydrogenase; Provisional	97.5
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.49
PRK08703	239	short chain dehydrogenase; Provisional	97.48
PRK12828	239	short chain dehydrogenase; Provisional	97.48
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.47
PRK05876	275	short chain dehydrogenase; Provisional	97.47
PRK08267	260	short chain dehydrogenase; Provisional	97.46
PRK06194	287	hypothetical protein; Provisional	97.46
PRK06953	222	short chain dehydrogenase; Provisional	97.46
PRK09186	256	flagellin modification protein A; Provisional	97.45
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.45
PRK07904	253	short chain dehydrogenase; Provisional	97.45
PRK10538	248	malonic semialdehyde reductase; Provisional	97.44
PRK06484	520	short chain dehydrogenase; Validated	97.43
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.43
PRK07677	252	short chain dehydrogenase; Provisional	97.43
PRK06482	276	short chain dehydrogenase; Provisional	97.43
PLN02253	280	xanthoxin dehydrogenase	97.42
PRK07067	257	sorbitol dehydrogenase; Provisional	97.42
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.4
PRK06197	306	short chain dehydrogenase; Provisional	97.4
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.4
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.4
PRK07454	241	short chain dehydrogenase; Provisional	97.39
PRK09291	257	short chain dehydrogenase; Provisional	97.39
PRK09072	263	short chain dehydrogenase; Provisional	97.38
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	97.38
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.38
PRK06128	300	oxidoreductase; Provisional	97.38
PRK08589	272	short chain dehydrogenase; Validated	97.38
PRK06483	236	dihydromonapterin reductase; Provisional	97.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.37
PRK08643	256	acetoin reductase; Validated	97.37
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.37
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	97.37
PRK09242	257	tropinone reductase; Provisional	97.37
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.36
PRK08251	248	short chain dehydrogenase; Provisional	97.36
PRK07774	250	short chain dehydrogenase; Provisional	97.36
PRK06914	280	short chain dehydrogenase; Provisional	97.35
KOG0725	270	consensus Reductases with broad range of substrate	97.35
PRK06125	259	short chain dehydrogenase; Provisional	97.35
PRK08263	275	short chain dehydrogenase; Provisional	97.34
PRK07035	252	short chain dehydrogenase; Provisional	97.34
PRK08862	227	short chain dehydrogenase; Provisional	97.33
PRK06138	252	short chain dehydrogenase; Provisional	97.32
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.31
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.31
PRK06179	270	short chain dehydrogenase; Provisional	97.31
PRK05875	276	short chain dehydrogenase; Provisional	97.3
PRK06720	169	hypothetical protein; Provisional	97.3
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.29
PRK06181	263	short chain dehydrogenase; Provisional	97.29
PRK06172	253	short chain dehydrogenase; Provisional	97.29
PRK07074	257	short chain dehydrogenase; Provisional	97.28
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.28
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.26
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	97.26
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.26
PRK07985	294	oxidoreductase; Provisional	97.26
PRK12367	245	short chain dehydrogenase; Provisional	97.26
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.25
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.25
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.25
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.24
PRK12747	252	short chain dehydrogenase; Provisional	97.24
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.23
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.22
PRK08628	258	short chain dehydrogenase; Provisional	97.22
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.22
PRK06701	290	short chain dehydrogenase; Provisional	97.22
PRK12746	254	short chain dehydrogenase; Provisional	97.2
CHL00194	317	ycf39 Ycf39; Provisional	97.19
PRK12937	245	short chain dehydrogenase; Provisional	97.19
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.18
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.18
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.18
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.18
PRK06114	254	short chain dehydrogenase; Provisional	97.18
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.17
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.17
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.17
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.17
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	97.16
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.16
PRK07791	286	short chain dehydrogenase; Provisional	97.15
PRK07856	252	short chain dehydrogenase; Provisional	97.14
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.13
COG4122	219	Predicted O-methyltransferase [General function pr	97.13
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.12
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.12
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.11
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.11
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.1
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.1
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.09
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.09
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.09
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.08
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.08
PRK08226	263	short chain dehydrogenase; Provisional	97.08
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.08
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.07
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.07
PRK07577	234	short chain dehydrogenase; Provisional	97.07
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.06
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.06
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.05
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.05
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	97.04
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.03
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.02
PRK06940	275	short chain dehydrogenase; Provisional	97.02
PRK06398	258	aldose dehydrogenase; Validated	97.01
PRK04148	134	hypothetical protein; Provisional	97.01
PRK07775	274	short chain dehydrogenase; Provisional	97.0
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.99
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.97
PRK06523	260	short chain dehydrogenase; Provisional	96.97
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.97
PRK08303	305	short chain dehydrogenase; Provisional	96.96
PRK12743	256	oxidoreductase; Provisional	96.96
PRK05650	270	short chain dehydrogenase; Provisional	96.95
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.93
PRK09135	249	pteridine reductase; Provisional	96.92
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.91
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.9
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.89
PRK08278	273	short chain dehydrogenase; Provisional	96.89
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.88
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.88
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.88
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.88
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.87
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.87
PRK08264	238	short chain dehydrogenase; Validated	96.86
PRK05599	246	hypothetical protein; Provisional	96.85
PRK07102	243	short chain dehydrogenase; Provisional	96.85
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.84
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.84
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.84
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.84
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.83
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.82
PRK07069	251	short chain dehydrogenase; Validated	96.82
TIGR00438	188	rrmJ cell division protein FtsJ.	96.82
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.8
PRK00811	283	spermidine synthase; Provisional	96.8
PLN02366	308	spermidine synthase	96.78
PLN02476	278	O-methyltransferase	96.78
PLN00015	308	protochlorophyllide reductase	96.78
PRK05855	582	short chain dehydrogenase; Validated	96.77
KOG1208	314	consensus Dehydrogenases with different specificit	96.77
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.77
PRK08219	227	short chain dehydrogenase; Provisional	96.77
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.75
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.74
PRK07201	657	short chain dehydrogenase; Provisional	96.72
PRK09134	258	short chain dehydrogenase; Provisional	96.71
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.7
COG2910	211	Putative NADH-flavin reductase [General function p	96.7
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.69
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.68
PRK00536	262	speE spermidine synthase; Provisional	96.66
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.66
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.64
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.62
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.62
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.62
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.61
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.6
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.58
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.58
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.57
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.57
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.57
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.56
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	96.56
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.55
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.54
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.54
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.51
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	96.5
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.5
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.49
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.49
PRK01581	374	speE spermidine synthase; Validated	96.49
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.48
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.47
PRK08309	177	short chain dehydrogenase; Provisional	96.47
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.46
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.44
PRK07578	199	short chain dehydrogenase; Provisional	96.43
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	96.42
PRK06123	248	short chain dehydrogenase; Provisional	96.41
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.41
PRK11207	197	tellurite resistance protein TehB; Provisional	96.4
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.39
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.38
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.37
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.36
PLN00016	378	RNA-binding protein; Provisional	96.34
PRK12744	257	short chain dehydrogenase; Provisional	96.33
PRK07402	196	precorrin-6B methylase; Provisional	96.3
PLN03075	296	nicotianamine synthase; Provisional	96.28
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.28
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.27
PRK07041	230	short chain dehydrogenase; Provisional	96.27
PRK04457	262	spermidine synthase; Provisional	96.26
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.26
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.25
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.24
PRK12827	249	short chain dehydrogenase; Provisional	96.23
PRK07023	243	short chain dehydrogenase; Provisional	96.23
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.21
PLN02823	336	spermine synthase	96.21
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.2
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.19
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.19
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.18
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.17
PRK14982	340	acyl-ACP reductase; Provisional	96.16
PRK06924	251	short chain dehydrogenase; Provisional	96.15
PLN02686	367	cinnamoyl-CoA reductase	96.15
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	96.12
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.12
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.12
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.11
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.1
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.09
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.09
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.08
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.08
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.08
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.07
PLN02653	340	GDP-mannose 4,6-dehydratase	96.07
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.06
PRK06849	389	hypothetical protein; Provisional	96.02
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.02
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.98
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.97
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	95.97
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.96
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.94
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.94
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.93
PRK08317	241	hypothetical protein; Provisional	95.92
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.92
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
COG1028	251	FabG Dehydrogenases with different specificities (	95.88
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.84
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.82
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.82
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.8
PRK08618	325	ornithine cyclodeaminase; Validated	95.76
PLN03139	386	formate dehydrogenase; Provisional	95.76
PLN02214	342	cinnamoyl-CoA reductase	95.74
PRK08655	437	prephenate dehydrogenase; Provisional	95.74
PLN00203	519	glutamyl-tRNA reductase	95.74
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.73
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.73
PRK13243	333	glyoxylate reductase; Reviewed	95.71
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	95.7
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.69
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.67
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.67
PLN02427	386	UDP-apiose/xylose synthase	95.66
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.66
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.64
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.63
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.63
PLN02650	351	dihydroflavonol-4-reductase	95.61
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.58
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.57
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.56
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.56
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.56
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	95.55
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.55
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.54
PRK14967	223	putative methyltransferase; Provisional	95.52
COG3268	382	Uncharacterized conserved protein [Function unknow	95.52
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.5
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.49
PRK07574	385	formate dehydrogenase; Provisional	95.48
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.48
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	95.46
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.45
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.43
PLN00198	338	anthocyanidin reductase; Provisional	95.43
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.41
PLN02240	352	UDP-glucose 4-epimerase	95.4

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.8e-43  Score=289.34  Aligned_cols=255  Identities=31%  Similarity=0.466  Sum_probs=221.4

Q ss_pred             CCccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcC
Q 024411            3 PISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCS   76 (268)
Q Consensus         3 ~~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~   76 (268)
                      .+|++|+|+++|++|+.|++||+|+++      |+|+||.+++++.++++ |++++.. ++|++++.+.|||++|....+
T Consensus        62 G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~-P~~ls~~-eAAal~~~~~TA~~~l~~~~~  139 (326)
T COG0604          62 GSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPL-PDGLSFE-EAAALPLAGLTAWLALFDRAG  139 (326)
T ss_pred             cceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeC-CCCCCHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            367799999999999999999999987      79999999999999999 9995554 489999999999999999899


Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d  155 (268)
                      ++++++|||+||+|++|++++|+||.+|+++++++.++++.+.++ ++|++++++|.++ ++.+.+++.+++ ++|+++|
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~-~lGAd~vi~y~~~-~~~~~v~~~t~g~gvDvv~D  217 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK-ELGADHVINYREE-DFVEQVRELTGGKGVDVVLD  217 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-hcCCCEEEcCCcc-cHHHHHHHHcCCCCceEEEE
Confidence            999999999999999999999999999988888887888888888 9999999999987 899999999998 9999999


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCce
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      ++|+..+..+++.|+++|+++.+|..++    ......+...++.+.+...++..... +....+.++++.+++.+|.++
T Consensus       218 ~vG~~~~~~~l~~l~~~G~lv~ig~~~g----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~  293 (326)
T COG0604         218 TVGGDTFAASLAALAPGGRLVSIGALSG----GPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLK  293 (326)
T ss_pred             CCCHHHHHHHHHHhccCCEEEEEecCCC----CCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999998663    12223446667778888887776532 245567888999999999999


Q ss_pred             eeeehhcccccHHHHH--HHHHcCCccceEEEEe
Q 024411          235 YVEDMAEGLESAPAAL--IGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~--~~~~~~~~~gkvvi~~  266 (268)
                      +.+..+|||++..++.  ..+. ++..||+|+++
T Consensus       294 ~~i~~~~~l~e~~~a~a~~~~~-~~~~GKvvl~~  326 (326)
T COG0604         294 PVIDRVYPLAEAPAAAAHLLLE-RRTTGKVVLKV  326 (326)
T ss_pred             ceeccEechhhhHHHHHHHHcc-cCCcceEEEeC
Confidence            9999999999954444  4444 58899999974

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.3e-42  Score=276.43  Aligned_cols=244  Identities=24%  Similarity=0.325  Sum_probs=218.3

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEe-c------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWG-M------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~-~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      |+.|+|.+||++|++||+||||-. +                              |+|+||+++++..++++ |++++.
T Consensus        64 EivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~i-P~~~d~  142 (339)
T COG1064          64 EIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKI-PEGLDL  142 (339)
T ss_pred             ceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEEC-CCCCCh
Confidence            447888899999999999999954 2                              89999999999999999 999554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . ++|.+.|++.|+|++|.. .+++||++|+|.|+ |++|++++|+|+.+|++|+++++++++.+.++ ++|++++++.+
T Consensus       143 ~-~aApllCaGiT~y~alk~-~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~-~lGAd~~i~~~  218 (339)
T COG1064         143 A-EAAPLLCAGITTYRALKK-ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSS  218 (339)
T ss_pred             h-hhhhhhcCeeeEeeehhh-cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH-HhCCcEEEEcC
Confidence            4 488999999999999955 79999999999998 79999999999999999999999999999999 99999999987


Q ss_pred             ChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          134 EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                      +. +..+.+++.    +|+++|+++...+...++.|+++|+++++|....    .+....+...++.+++++.|+..++ 
T Consensus       219 ~~-~~~~~~~~~----~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~----~~~~~~~~~~li~~~~~i~GS~~g~-  288 (339)
T COG1064         219 DS-DALEAVKEI----ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGG----GPIPLLPAFLLILKEISIVGSLVGT-  288 (339)
T ss_pred             Cc-hhhHHhHhh----CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCC----cccCCCCHHHhhhcCeEEEEEecCC-
Confidence            54 677777664    9999999998889999999999999999998531    1223355677889999999999988 


Q ss_pred             ccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          214 YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                          ..++++++++..+|+++|.+.+.++++++++|++.|.+++..|+.||+++
T Consensus       289 ----~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         289 ----RADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             ----HHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence                88899999999999999999889999999999999999999999999875

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=4e-42  Score=257.97  Aligned_cols=257  Identities=22%  Similarity=0.322  Sum_probs=225.2

Q ss_pred             CCCccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            2 QPISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         2 ~~~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      |..|++|+|+.||++|+++++||||+..   |.|+|+..+|...++++ |+.+++. .+|++...++|||..+++..+++
T Consensus        68 pGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~yaee~~vP~~kv~~v-pe~i~~k-~aaa~llq~lTAy~ll~e~y~vk  145 (336)
T KOG1197|consen   68 PGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGAYAEEVTVPSVKVFKV-PEAITLK-EAAALLLQGLTAYMLLFEAYNVK  145 (336)
T ss_pred             CCcccceEEEEecCCccccccccEEEEeccchhhheeccccceeeccC-CcccCHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence            3467899999999999999999999987   89999999999999999 9885554 37788889999999999999999


Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~  157 (268)
                      +|++||+|.|.||+|++++|+++..|+.++.++++.++.+.++ +.|+.++|++..+ ++.+++.+.++| |+|+++|.+
T Consensus       146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak-enG~~h~I~y~~e-D~v~~V~kiTngKGVd~vyDsv  223 (336)
T KOG1197|consen  146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK-ENGAEHPIDYSTE-DYVDEVKKITNGKGVDAVYDSV  223 (336)
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH-hcCCcceeeccch-hHHHHHHhccCCCCceeeeccc
Confidence            9999999999999999999999999999999999999999999 9999999999998 999999999987 999999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc---ccchHHHHHHHHHHHHcCCce
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      |.+.+...+.+|++.|.+|.+|..++.     .+++.+.++..+++.+..-....+   +........+++.++.+|.++
T Consensus       224 G~dt~~~sl~~Lk~~G~mVSfG~asgl-----~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk  298 (336)
T KOG1197|consen  224 GKDTFAKSLAALKPMGKMVSFGNASGL-----IDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLK  298 (336)
T ss_pred             cchhhHHHHHHhccCceEEEeccccCC-----CCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccc
Confidence            999999999999999999999987653     233445555566666554443333   223334567778888999999


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +.+.++|||+++.+|+..++++...||+++-+.
T Consensus       299 ~~I~~~ypls~vadA~~diesrktvGkvlLlp~  331 (336)
T KOG1197|consen  299 IHIDHVYPLSKVADAHADIESRKTVGKVLLLPG  331 (336)
T ss_pred             eeeeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence            999999999999999999999999999998764

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-41  Score=278.77  Aligned_cols=264  Identities=70%  Similarity=1.178  Sum_probs=220.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCc--ceeec-CCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH--LFKIQ-HTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~--~~~~~-p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      ++|+|+|.+||++++.|++||+|+++|+|+||.+++...  +.+++ |++++.+.+++++++++.|||+++...+.++++
T Consensus        80 ~~~~G~v~~vg~~v~~~~~Gd~V~~~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g  159 (348)
T PLN03154         80 IEGFGVSKVVDSDDPNFKPGDLISGITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKG  159 (348)
T ss_pred             eEeeEEEEEEecCCCCCCCCCEEEecCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCC
Confidence            467899999999999999999999999999999999864  43332 777555434778999999999999888889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      ++|||+|++|++|++++|+|+.+|++|+++++++++.+.+++++|+++++++++.+++.+.+++.+++++|+++||+|+.
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~  239 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD  239 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHH
Confidence            99999999999999999999999999999999999999886469999999987421677777777666899999999998


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehh
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA  240 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  240 (268)
                      .+..++++++++|+++.+|..++..........+...++.+++++.|+....+.....+.++++++++.+|++++.+..+
T Consensus       240 ~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~  319 (348)
T PLN03154        240 MLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMS  319 (348)
T ss_pred             HHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecc
Confidence            89999999999999999997543211111111245567788999998876544333456788999999999999988889


Q ss_pred             cccccHHHHHHHHHcCCccceEEEEec
Q 024411          241 EGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       241 ~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      |+|+++++||+.+.+++..||+|+++.
T Consensus       320 ~~L~~~~~A~~~l~~g~~~GKvVl~~~  346 (348)
T PLN03154        320 EGLESAPAALVGLFSGKNVGKQVIRVA  346 (348)
T ss_pred             cCHHHHHHHHHHHHcCCCCceEEEEec
Confidence            999999999999999999999999875

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=2.1e-40  Score=255.30  Aligned_cols=264  Identities=51%  Similarity=0.876  Sum_probs=238.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEE
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECV   83 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~v   83 (268)
                      +.|.++...+-|+...|++||.|.+..+|+||..++.+.+.+++|...+++.....|.+++.|||.+|.+.+++++|+++
T Consensus        75 ~~gg~V~~Vv~S~~~~f~~GD~V~~~~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~Getv  154 (340)
T COG2130          75 MVGGTVAKVVASNHPGFQPGDIVVGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETV  154 (340)
T ss_pred             eECCeeEEEEecCCCCCCCCCEEEecccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEE
Confidence            34444445567888999999999999999999999999999997766667766889999999999999999999999999


Q ss_pred             EEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhhHH
Q 024411           84 FISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLD  163 (268)
Q Consensus        84 lI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  163 (268)
                      +|.+|+|.+|..+.|+||..|++|+.++.+++|.+++.+++|.+.++||+.+ ++.+.+.+.+++++|+.||++|++.++
T Consensus       155 vVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~-d~~~~L~~a~P~GIDvyfeNVGg~v~D  233 (340)
T COG2130         155 VVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLD  233 (340)
T ss_pred             EEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcc-cHHHHHHHHCCCCeEEEEEcCCchHHH
Confidence            9999999999999999999999999999999999999966999999999998 999999999999999999999999999


Q ss_pred             hHHHhhhcCCEEEEEcccccccCC-CCccccchHHHHhcceeeeeEEe-cccccchHHHHHHHHHHHHcCCceeeeehhc
Q 024411          164 AVLPNMKIRGRIAACGMISQYNLD-KPEGVHNLMYLVSKRLRMEGFIV-LDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE  241 (268)
Q Consensus       164 ~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  241 (268)
                      ..+..|+..+|++.+|..++++.. .+........++.+++++.|+.. ..+..+.++.++++.+|+++|+++...+.+-
T Consensus       234 Av~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~d  313 (340)
T COG2130         234 AVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVD  313 (340)
T ss_pred             HHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehh
Confidence            999999999999999998887654 34455567778889999999999 4445666799999999999999999887777


Q ss_pred             ccccHHHHHHHHHcCCccceEEEEecC
Q 024411          242 GLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       242 ~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      +||++++||..|.+++..||+|+++.+
T Consensus       314 GlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         314 GLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             hhhccHHHHHHHhcCCccceEEEEecC
Confidence            899999999999999999999999864

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=2.2e-38  Score=263.65  Aligned_cols=263  Identities=74%  Similarity=1.244  Sum_probs=217.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecC-CcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcE
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGEC   82 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~-~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~   82 (268)
                      ++|.|+++.||++++.|++||+|+++|+|+||++++. +.++++||++++++.+++++++++.|||+++...+++++|++
T Consensus        75 ~~g~~~~~~v~~~v~~~~vGd~V~~~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~  154 (338)
T cd08295          75 ITGYGVAKVVDSGNPDFKVGDLVWGFTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGET  154 (338)
T ss_pred             EeccEEEEEEecCCCCCCCCCEEEecCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCE
Confidence            3457888889999999999999999999999999999 789999556655553578899999999999988889999999


Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhhH
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLL  162 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  162 (268)
                      |||+|++|++|++++|+|+.+|++|+++++++++.+.+++.+|+++++++.+.+++.+.+++.+++++|+++|++|+..+
T Consensus       155 VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~  234 (338)
T cd08295         155 VFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKML  234 (338)
T ss_pred             EEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999823999999987542267777777765689999999999889


Q ss_pred             HhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcc
Q 024411          163 DAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEG  242 (268)
Q Consensus       163 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  242 (268)
                      ..++++++++|+++.+|...+..........+....+.+++++.++....+.....+.++++++++.+|.+++.+...|+
T Consensus       235 ~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~  314 (338)
T cd08295         235 DAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADG  314 (338)
T ss_pred             HHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccC
Confidence            99999999999999998754321110001123455667778888766554433345678889999999999988777899


Q ss_pred             cccHHHHHHHHHcCCccceEEEEe
Q 024411          243 LESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       243 ~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++++++|++.+++++..||+|+++
T Consensus       315 l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         315 LESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEC
Confidence            999999999999999899999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-37  Score=242.70  Aligned_cols=247  Identities=21%  Similarity=0.249  Sum_probs=212.3

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      |.+|+|.+||++|+++|+||||..-                               |++++|++.+++.|+++ |++  +
T Consensus        68 EssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KL-Pd~--v  144 (354)
T KOG0024|consen   68 ESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKL-PDN--V  144 (354)
T ss_pred             ccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeC-CCC--C
Confidence            5689999999999999999999521                               89999999999999999 999  5


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      ++++++|..+++++|||+ +++.+++|+++||+|| |++|+.+...||.+|+ +|++++-.+.+++.++ ++|++.+.+.
T Consensus       145 s~eeGAl~ePLsV~~HAc-r~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak-~~Ga~~~~~~  221 (354)
T KOG0024|consen  145 SFEEGALIEPLSVGVHAC-RRAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAK-KFGATVTDPS  221 (354)
T ss_pred             chhhcccccchhhhhhhh-hhcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH-HhCCeEEeec
Confidence            556889999999999999 5689999999999998 9999999999999999 9999999999999999 8999876655


Q ss_pred             CCh---hhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeee
Q 024411          133 KEE---ADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG  207 (268)
Q Consensus       133 ~~~---~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (268)
                      ...   ..+.+.++...++ .+|+.|||+|. ..++.++..++++|++++.|+..      ....++......+++++.|
T Consensus       222 ~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~------~~~~fpi~~v~~kE~~~~g  295 (354)
T KOG0024|consen  222 SHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA------EEIQFPIIDVALKEVDLRG  295 (354)
T ss_pred             cccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC------CccccChhhhhhheeeeee
Confidence            442   1455566665554 79999999997 78999999999999999998743      3344566778899999999


Q ss_pred             EEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCc-cceEEEEecC
Q 024411          208 FIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQN-VGKQVVAVAP  268 (268)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~~~  268 (268)
                      +..+.     +.++..+++++++|++.  ++++..|++++..+||+.++++.. .-|+++..++
T Consensus       296 ~fry~-----~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  296 SFRYC-----NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             eeeec-----cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            88865     66899999999999884  678899999999999999998764 4488887654

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=233.98  Aligned_cols=266  Identities=73%  Similarity=1.273  Sum_probs=242.2

Q ss_pred             CCCccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCc--ceeec-CCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH--LFKIQ-HTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         2 ~~~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~--~~~~~-p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      .||+|.|+...+-++-+++++||.||++-+|.||.++++..  .++++ |.+++++....++.++++|||..+++.+.++
T Consensus        73 ~pi~g~GV~kVi~S~~~~~~~GD~v~g~~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk  152 (343)
T KOG1196|consen   73 KPIDGFGVAKVIDSGHPNYKKGDLVWGIVGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPK  152 (343)
T ss_pred             cEecCCceEEEEecCCCCCCcCceEEEeccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCC
Confidence            36899999999999999999999999999999999998865  44441 3567788668899999999999999999999


Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|++++|.||+|.+|+.+.|+|+.+|++|+..+.|+++.+.+++++|.+..+||.++.++.+.+++..++++|+.||.+|
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVG  232 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVG  232 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccC
Confidence            99999999999999999999999999999999999999999998899999999998657888888887889999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeee
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED  238 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  238 (268)
                      +..++..+..|+..||++.+|..+.++.+.+....+....+.+++++.|+...++.+...+.++.+..++++|+++..-+
T Consensus       233 G~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~ed  312 (343)
T KOG1196|consen  233 GKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVED  312 (343)
T ss_pred             cHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehh
Confidence            99999999999999999999999888777666666778889999999999998888788999999999999999998887


Q ss_pred             hhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          239 MAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       239 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ..-.|++.++||.-|.++...||.++.+.
T Consensus       313 i~~Glen~P~A~vglf~GkNvGKqiv~va  341 (343)
T KOG1196|consen  313 IADGLENGPSALVGLFHGKNVGKQLVKVA  341 (343)
T ss_pred             HHHHHhccHHHHHHHhccCcccceEEEee
Confidence            77789999999999999999999999875

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=4.6e-36  Score=250.48  Aligned_cols=261  Identities=38%  Similarity=0.677  Sum_probs=208.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-cccceeEeecCCcceeecCCCCCc---hhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-TGWEEYSLITAPHLFKIQHTDVPL---SYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-g~~~~~~~v~~~~~~~~~p~~~~~---~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|.++|+++++|++||+|+++ ++|+||++++.+.++++ |++++.   +..+++++.++.|||+++...+++++
T Consensus        74 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~ae~~~v~~~~~~~i-P~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~  152 (345)
T cd08293          74 LDGGGVGVVEESKHQKFAVGDIVTSFNWPWQTYAVLDGSSLEKV-DPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITP  152 (345)
T ss_pred             eEeeEEEEEeccCCCCCCCCCEEEecCCCceeEEEecHHHeEEc-CccccccchhHHhhhcCcHHHHHHHHHHHhccCCC
Confidence            57899999999999999999999998 58999999999999999 876422   22245778899999999988878887


Q ss_pred             C--cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 G--ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~--~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +  ++|||+|++|++|++++|+|+.+|+ +|+++++++++.+.+++++|+++++++++. ++.+.+++.+++++|+++|+
T Consensus       153 g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~-~~~~~i~~~~~~gvd~vid~  231 (345)
T cd08293         153 GANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTD-NVAERLRELCPEGVDVYFDN  231 (345)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHCCCCceEEEEC
Confidence            7  9999999999999999999999999 899999999999998745999999998876 88888888776689999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCc-cccc--hHH-HHhcceeeeeEEecccccchHHHHHHHHHHHHcCC
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPE-GVHN--LMY-LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      +|+..+..++++++++|+++.+|........... ....  ... ...+++++.++..........+.++++.+++.+|.
T Consensus       232 ~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  311 (345)
T cd08293         232 VGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGK  311 (345)
T ss_pred             CCcHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCC
Confidence            9997789999999999999999864321000000 0111  111 12345554444332222233566888899999999


Q ss_pred             ceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          233 LVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       233 l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +++....+++++++++|++.+.+++..||+|+++
T Consensus       312 i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         312 LKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             ccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            9987666779999999999999998899999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1e-35  Score=246.80  Aligned_cols=260  Identities=47%  Similarity=0.824  Sum_probs=212.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecCC---cceeecCCCCCc--h--hhhhhccchHHHHHHHhhhhcC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAP---HLFKIQHTDVPL--S--YYTGILGMPGMTAYVGFYEVCS   76 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~---~~~~~~p~~~~~--~--~~~a~l~~~~~~a~~~l~~~~~   76 (268)
                      +.|.+++..|-+.++.|++||+|+++++|++|++++.+   .++++ |++++.  .  ...++++++++|||+++...++
T Consensus        62 v~G~e~~G~V~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~i-P~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~  140 (329)
T cd08294          62 MIGTQVAKVIESKNSKFPVGTIVVASFGWRTHTVSDGKDQPDLYKL-PADLPDDLPPSLALGVLGMPGLTAYFGLLEICK  140 (329)
T ss_pred             EecceEEEEEecCCCCCCCCCEEEeeCCeeeEEEECCccccceEEC-CccccccCChHHHHHhcccHHHHHHHHHHHhcC
Confidence            44555444444667789999999999999999999999   99999 988541  1  1235788999999999988889


Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +++++++||+|++|++|++++|+|+.+|++|+++++++++.+.++ ++|++++++++.. ++.+.+++.+++++|+++|+
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~-~~Ga~~vi~~~~~-~~~~~v~~~~~~gvd~vld~  218 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKTV-SLEEALKEAAPDGIDCYFDN  218 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-cHHHHHHHHCCCCcEEEEEC
Confidence            999999999999999999999999999999999999999999999 8999999999876 88888888776689999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCc-cccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPE-GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      +|+..+..++++++++|+++.+|........... .......++.+++++.++....+.....+.++++++++.+|.+++
T Consensus       219 ~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  298 (329)
T cd08294         219 VGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKY  298 (329)
T ss_pred             CCHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcC
Confidence            9998899999999999999999864322111111 112234566788888886654432334567888999999999998


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+..+++++++++|++.+.+++..||+|+++
T Consensus       299 ~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         299 REHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             CcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            7767899999999999999999999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=8.4e-36  Score=250.84  Aligned_cols=250  Identities=18%  Similarity=0.241  Sum_probs=212.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      .|++|+|+++|++++++++||+|+..                                                   |+|
T Consensus        67 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~  146 (371)
T cd08281          67 HEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAF  146 (371)
T ss_pred             ccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccc
Confidence            46789999999999999999999752                                                   589


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++.. +++.+.+++.+||+++...++++++++|+|+|+ |++|++++|+|+..|+ +|++++
T Consensus       147 aey~~v~~~~~~~l-P~~l~~~-~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         147 AEYAVVSRRSVVKI-DKDVPLE-IAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             eeeEEecccceEEC-CCCCChH-HhhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEc
Confidence            99999999999999 9985554 377788899999999877788999999999986 9999999999999999 699999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCc
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPE  190 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  190 (268)
                      +++++.+.++ ++|+++++++.+. ++.+.+++.+++++|++|||+|. ..+..++++++++|+++.+|...+.    ..
T Consensus       224 ~~~~r~~~a~-~~Ga~~~i~~~~~-~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~  297 (371)
T cd08281         224 LNEDKLALAR-ELGATATVNAGDP-NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE----AR  297 (371)
T ss_pred             CCHHHHHHHH-HcCCceEeCCCch-hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCC----ce
Confidence            9999999998 9999999988876 78888888776689999999997 7889999999999999999874321    11


Q ss_pred             cccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          191 GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ...+...++.+++++.++....+.  ..+.+.++++++.+|++++  .++++|+|+++++||+.+.+++..+|+++
T Consensus       298 ~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         298 LSVPALSLVAEERTLKGSYMGSCV--PRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             eeecHHHHhhcCCEEEEEecCCCC--hHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            234556778899999998765432  2456888999999999975  57789999999999999999988878763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.9e-36  Score=235.26  Aligned_cols=245  Identities=23%  Similarity=0.265  Sum_probs=211.4

Q ss_pred             ccceEEEEecCCCCCCCCCCeEE-e-----------------------------c--------cccceeEeecCCcceee
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVW-G-----------------------------M--------TGWEEYSLITAPHLFKI   46 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~-~-----------------------------~--------g~~~~~~~v~~~~~~~~   46 (268)
                      |++|+|+.||++|++|++||||= +                             .        |+|++|+++++..++++
T Consensus        72 EiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kI  151 (360)
T KOG0023|consen   72 EIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKI  151 (360)
T ss_pred             eeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEEC
Confidence            55889999999999999999991 0                             0        56999999999999999


Q ss_pred             cCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 024411           47 QHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        47 ~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~  126 (268)
                       |++++++ .+|.+.|++.|+|.+|. ..++.||+++-|.|+ |++|.+++|+||.+|.+|+++++++.+.+.+.+.+|+
T Consensus       152 -P~~~pl~-~aAPlLCaGITvYspLk-~~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA  227 (360)
T KOG0023|consen  152 -PENLPLA-SAAPLLCAGITVYSPLK-RSGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA  227 (360)
T ss_pred             -CCCCChh-hccchhhcceEEeehhH-HcCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc
Confidence             9997776 59999999999999994 567889999999998 6699999999999999999999998666666648999


Q ss_pred             CeeeecC-ChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          127 DEAFNYK-EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       127 ~~v~~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      +.-++.. +. +..+.+...+.+++|-+.+. ....+..++.+++++|++|.+|.+..      ........+..+.+++
T Consensus       228 d~fv~~~~d~-d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~------~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  228 DVFVDSTEDP-DIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEK------PLKLDTFPLILGRKSI  299 (360)
T ss_pred             ceeEEecCCH-HHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEEEEeCcCC------cccccchhhhcccEEE
Confidence            9877777 44 88888888776666666655 44678899999999999999998552      3445667778899999


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      .|+..++     ....++++++.+++.+++.+ +..+++++++|++.|.++...++.|++++
T Consensus       300 ~GS~vG~-----~ket~E~Ldf~a~~~ik~~I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  300 KGSIVGS-----RKETQEALDFVARGLIKSPI-ELVKLSEVNEAYERMEKGDVRYRFVVDVS  355 (360)
T ss_pred             Eeecccc-----HHHHHHHHHHHHcCCCcCce-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence            9999988     88899999999999999877 47899999999999999999999999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.9e-36  Score=237.78  Aligned_cols=248  Identities=23%  Similarity=0.275  Sum_probs=213.9

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------cccc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGWE   33 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~~   33 (268)
                      ||+|+|++||++|+++|+||.|+..                                                   ++|+
T Consensus        62 EgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa  141 (366)
T COG1062          62 EGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFA  141 (366)
T ss_pred             ccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccch
Confidence            7899999999999999999999521                                                   4899


Q ss_pred             eeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeC
Q 024411           34 EYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAG  112 (268)
Q Consensus        34 ~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~  112 (268)
                      ||.++++.++.++ +++.|+. .++.+.|...|.+.+..+.+++++|+++.|.|. |++|++++|-|+..|+ ++++++.
T Consensus       142 ~y~vv~~~s~vki-~~~~p~~-~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAvD~  218 (366)
T COG1062         142 EYTVVHEISLVKI-DPDAPLE-KACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAVDI  218 (366)
T ss_pred             hheeecccceEEC-CCCCCcc-ceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEEeC
Confidence            9999999999999 5554444 378899999999999999999999999999997 9999999999999999 9999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCcc
Q 024411          113 SKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEG  191 (268)
Q Consensus       113 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  191 (268)
                      +++|++.++ ++|+++.+|.++..++.+.+++++++++|++|||+|+ ..+++++.++.++|+.+.+|....    ....
T Consensus       219 ~~~Kl~~A~-~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~----~~~i  293 (366)
T COG1062         219 NPEKLELAK-KFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGA----GQEI  293 (366)
T ss_pred             CHHHHHHHH-hcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCC----Ccee
Confidence            999999999 9999999999875258999999999899999999999 889999999999999999998542    2223


Q ss_pred             ccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          192 VHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.+..++... .++.|+..+....  +.++..+++++.+|++.  .++++.++|+|++|||+.|.+++.. |-||
T Consensus       294 ~~~~~~lv~g-r~~~Gs~~G~~~p--~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi  364 (366)
T COG1062         294 STRPFQLVTG-RVWKGSAFGGARP--RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVI  364 (366)
T ss_pred             ecChHHeecc-ceEEEEeecCCcc--ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEe
Confidence            3445565555 7889988876532  56799999999999886  4677899999999999999998876 4444

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=2.4e-35  Score=244.15  Aligned_cols=257  Identities=44%  Similarity=0.723  Sum_probs=205.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeec---CCCCCchhhh-hhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQ---HTDVPLSYYT-GILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~---p~~~~~~~~~-a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .+++|+|.++|   +.|++||+|+++++|++|++++.+.+.+++   |++++.. ++ +++++++.|||+++...+++++
T Consensus        63 ~~~~g~v~~~~---~~~~~GdrV~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~-~aaa~l~~~~~TA~~~l~~~~~~~~  138 (325)
T TIGR02825        63 QQVARVVESKN---VALPKGTIVLASPGWTSHSISDGKDLEKLLTEWPDTLPLS-LALGTVGMPGLTAYFGLLEICGVKG  138 (325)
T ss_pred             ceEEEEEEeCC---CCCCCCCEEEEecCceeeEEechhheEEccccccCCCCHH-HHHHhcccHHHHHHHHHHHHhCCCC
Confidence            45566666655   469999999999999999999988866652   5664433 24 6789999999999988889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++|||+|++|++|++++|+|+..|++|+++++++++.+.++ ++|+++++++++.+.+.+.++...++++|+++|++|+
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            999999999999999999999999999999999999999998 8999999998763145556666655589999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCcc-ccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCceeee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEG-VHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLVYVE  237 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~  237 (268)
                      ..+..++++++++|+++.+|...+........ ......++.+++++.++....+ .....+.++++++++.+|++++.+
T Consensus       218 ~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  297 (325)
T TIGR02825       218 EFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKE  297 (325)
T ss_pred             HHHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccce
Confidence            88899999999999999998754311100011 1123345667788887765433 223356788999999999999887


Q ss_pred             ehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          238 DMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       238 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      ..+|+++++++|++.+.+++..||+|++
T Consensus       298 ~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       298 YVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             eccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            7889999999999999999999999973

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.9e-35  Score=246.16  Aligned_cols=244  Identities=23%  Similarity=0.273  Sum_probs=206.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|+++++||+|+.                               .|+|+||++++.+.++++ |++++
T Consensus        60 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~-P~~~~  138 (339)
T cd08239          60 HEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPL-PDDLS  138 (339)
T ss_pred             cCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEEC-CCCCC
Confidence            4679999999999999999999975                               278999999999999999 88855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. +++.+++++.|||+++. ...+.++++|||+|+ |++|++++|+++.+|++ |+++++++++.+.++ ++|++++++
T Consensus       139 ~~-~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~-~~ga~~~i~  214 (339)
T cd08239         139 FA-DGALLLCGIGTAYHALR-RVGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAK-ALGADFVIN  214 (339)
T ss_pred             HH-HhhhhcchHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEc
Confidence            44 37788899999999995 467899999999986 99999999999999998 999999999999998 999999998


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +++. + .+.+.+.+++ ++|+++||+|+. .+..++++++++|+++.+|...+.     . ......++.+++++.++.
T Consensus       215 ~~~~-~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~-~~~~~~~~~~~~~i~g~~  286 (339)
T cd08239         215 SGQD-D-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL-----T-IEVSNDLIRKQRTLIGSW  286 (339)
T ss_pred             CCcc-h-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc-----c-cCcHHHHHhCCCEEEEEe
Confidence            8775 5 6677777766 899999999984 568899999999999999874321     1 111245677899999877


Q ss_pred             ecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ..+     .+.++++++++.+|.+++  .++++|+++++++||+.+.++. .||+|++|
T Consensus       287 ~~~-----~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         287 YFS-----VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             cCC-----HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            654     567899999999998864  6788999999999999998875 69999975

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.1e-34  Score=240.07  Aligned_cols=250  Identities=22%  Similarity=0.266  Sum_probs=208.7

Q ss_pred             CccceEEEEecCCCCC-CCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            4 ISGYGVAKVLDSENPE-FNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~-~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      .|++|+|.++|+++++ |++||+|+++    |+|+||++++++.++++ |++++.. ++++++....|||.++ ..... 
T Consensus        66 ~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~i-P~~~~~~-~aa~~~~~~~ta~~~~-~~~~~-  141 (324)
T cd08291          66 FEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPL-PDGVSFE-QGASSFVNPLTALGML-ETARE-  141 (324)
T ss_pred             cceEEEEEEECCCccccCCCCCEEEecCCCCCcchheeeecHHHeEEC-CCCCCHH-HHhhhcccHHHHHHHH-Hhhcc-
Confidence            4678999999999996 9999999986    89999999999999999 8885544 3667788888998655 44555 


Q ss_pred             CCcEEEEe-cCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           79 HGECVFIS-AASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~-ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      +++.++|+ +++|++|++++|+|+.+|++|+++++++++.+.++ ++|+++++++... ++.+.+++.+++ ++|+++|+
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~~~~v~~~~~~~~~d~vid~  219 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KIGAEYVLNSSDP-DFLEDLKELIAKLNATIFFDA  219 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEECCCc-cHHHHHHHHhCCCCCcEEEEC
Confidence            45556665 78899999999999999999999999999999998 8999999998876 888888888776 89999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-cchHHHHHHHHHHHHcCCcee
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      +|+......+++++++|+++.+|...+..    ....+...++.+++++.++....+. ....+.++++.+++. +.+++
T Consensus       220 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  294 (324)
T cd08291         220 VGGGLTGQILLAMPYGSTLYVYGYLSGKL----DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKT  294 (324)
T ss_pred             CCcHHHHHHHHhhCCCCEEEEEEecCCCC----cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Ccccc
Confidence            99987888899999999999998743211    1123345667899999988876542 223567888889888 99999


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      .++++|+|+++++||+.+.+++..||+++
T Consensus       295 ~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~  323 (324)
T cd08291         295 TFASRYPLALTLEAIAFYSKNMSTGKKLL  323 (324)
T ss_pred             ceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence            99999999999999999999999999987

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.3e-34  Score=242.52  Aligned_cols=250  Identities=18%  Similarity=0.237  Sum_probs=209.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------------------ccccceeEeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------------------MTGWEEYSLITA   40 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------------------~g~~~~~~~v~~   40 (268)
                      -|++|+|+++|+++++|++||+|+.                                           .|+|+||+++++
T Consensus        60 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~  139 (358)
T TIGR03451        60 HEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHA  139 (358)
T ss_pred             cceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEeh
Confidence            4679999999999999999999974                                           278999999999


Q ss_pred             CcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Q 024411           41 PHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDL  119 (268)
Q Consensus        41 ~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~  119 (268)
                      +.++++ |++++.. .++.++++..+||+++...+.++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.
T Consensus       140 ~~~~~i-p~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~  216 (358)
T TIGR03451       140 GQCTKV-DPAADPA-AAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEW  216 (358)
T ss_pred             hheEEC-CCCCChh-HhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            999999 8885444 377888889999998877788999999999986 9999999999999999 59999999999999


Q ss_pred             HHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHH
Q 024411          120 LKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMY  197 (268)
Q Consensus       120 ~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  197 (268)
                      ++ ++|+++++++.+. ++.+.+++.+++ ++|+++||+|+ ..+..++++++++|+++.+|...+.    .....+...
T Consensus       217 ~~-~~Ga~~~i~~~~~-~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~----~~~~~~~~~  290 (358)
T TIGR03451       217 AR-EFGATHTVNSSGT-DPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPD----MTLELPLLD  290 (358)
T ss_pred             HH-HcCCceEEcCCCc-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC----ceeeccHHH
Confidence            98 9999999988776 777888888776 89999999997 6889999999999999999874321    112344556


Q ss_pred             HHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          198 LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      ++.+++++.++.....  ...+.++++++++++|.+++  .++++|+++++++||+.+++++.. |+++.
T Consensus       291 ~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       291 VFGRGGALKSSWYGDC--LPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             HhhcCCEEEEeecCCC--CcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            7788888888754321  12566888999999999965  578899999999999999888765 77765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.3e-34  Score=242.18  Aligned_cols=252  Identities=19%  Similarity=0.240  Sum_probs=208.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|.++|+++++|++||+|+..                                                   |+|
T Consensus        69 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~  148 (378)
T PLN02827         69 HEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSF  148 (378)
T ss_pred             ccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccc
Confidence            47899999999999999999999852                                                   689


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++.. +++.+.+++.++|+++...++++++++|||+|+ |++|++++|+|+..|+ .|++++
T Consensus       149 aeyv~v~~~~~~~i-P~~l~~~-~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~  225 (378)
T PLN02827        149 SEYTVVHSGCAVKV-DPLAPLH-KICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVD  225 (378)
T ss_pred             eeeEEechhheEEC-CCCCCHH-HhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEC
Confidence            99999999999999 9985543 367778888899988877778999999999986 9999999999999999 577788


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  188 (268)
                      +++++.+.++ ++|+++++++++. +++.+.+++.+++++|+++|++|. ..+..+++.++++ |+++.+|...+     
T Consensus       226 ~~~~~~~~a~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-----  299 (378)
T PLN02827        226 INPEKAEKAK-TFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-----  299 (378)
T ss_pred             CCHHHHHHHH-HcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC-----
Confidence            8999999998 9999888887641 156677777766689999999998 5789999999998 99999987432     


Q ss_pred             Cccccc-hHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          189 PEGVHN-LMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       189 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      . .... ...++.+++++.|+....+.  ....++++++++.+|++++  .++++|+|+++++|++.+.+++. .|+||.
T Consensus       300 ~-~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~  375 (378)
T PLN02827        300 K-PEVSAHYGLFLSGRTLKGSLFGGWK--PKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIH  375 (378)
T ss_pred             C-ccccccHHHHhcCceEEeeecCCCc--hhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEE
Confidence            1 1122 23567789999987765432  2456888999999999988  78889999999999999998876 699998


Q ss_pred             ecC
Q 024411          266 VAP  268 (268)
Q Consensus       266 ~~~  268 (268)
                      +.+
T Consensus       376 ~~~  378 (378)
T PLN02827        376 MPK  378 (378)
T ss_pred             ecC
Confidence            753

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-34  Score=240.54  Aligned_cols=240  Identities=18%  Similarity=0.222  Sum_probs=199.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-----------------------------------ccccceeEeecCCcceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-----------------------------------MTGWEEYSLITAPHLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-----------------------------------~g~~~~~~~v~~~~~~~~~p   48 (268)
                      -|++|+|+++  ++++|++||+|+.                                   .|+|+||++++++.++++ |
T Consensus        65 hE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~-P  141 (343)
T PRK09880         65 HEVIGKIVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPY-P  141 (343)
T ss_pred             cccEEEEEEe--cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEEC-C
Confidence            4778999999  7889999999973                                   278999999999999999 8


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++  ++++++..++.+||+++.+. ...++++|+|+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|++
T Consensus       142 ~~l~--~~~aa~~~~~~~a~~al~~~-~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lGa~  216 (343)
T PRK09880        142 EKAD--EKVMAFAEPLAVAIHAAHQA-GDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMGAD  216 (343)
T ss_pred             CCCC--HHHHHhhcHHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcCCc
Confidence            8844  34556778889999999654 5668999999997 9999999999999999 6999999999999999 89999


Q ss_pred             eeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeee
Q 024411          128 EAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRME  206 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (268)
                      ++++++++ ++.+ +... .+++|++|||+|. ..+..++++++++|+++.+|....      ....++..++.+++++.
T Consensus       217 ~vi~~~~~-~~~~-~~~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~  287 (343)
T PRK09880        217 KLVNPQND-DLDH-YKAE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA------PPEFPMMTLIVKEISLK  287 (343)
T ss_pred             EEecCCcc-cHHH-Hhcc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CCccCHHHHHhCCcEEE
Confidence            99988775 5443 2222 2369999999998 678999999999999999987321      12345567778899998


Q ss_pred             eEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          207 GFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++..+      .+.++++++++.+|++++  .++++|+++++++|++.+.+++..||+++.+
T Consensus       288 g~~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        288 GSFRF------TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             EEeec------cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            87643      345888999999999975  5778999999999999999888789999874

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2.4e-34  Score=240.67  Aligned_cols=242  Identities=17%  Similarity=0.217  Sum_probs=198.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      -|++|+|+++|++|++|++||+|+.                                      .|+|+||++++.+.+++
T Consensus        72 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~  151 (360)
T PLN02586         72 HEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLR  151 (360)
T ss_pred             cceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeee
Confidence            4679999999999999999999973                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHhc
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD-LLKNKF  124 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~-~~~~~~  124 (268)
                      + |++++.. +++++++.+.|||+++.....++++++|+|.|+ |++|++++|+|+.+|++|++++.++++.. .++ ++
T Consensus       152 l-P~~ls~~-~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~-~~  227 (360)
T PLN02586        152 F-PDNLPLD-AGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN-RL  227 (360)
T ss_pred             C-CCCCCHH-HhhhhhcchHHHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH-hC
Confidence            9 9985554 377889999999999977666789999999886 99999999999999999998887766544 445 89


Q ss_pred             CCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcce
Q 024411          125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRL  203 (268)
Q Consensus       125 g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  203 (268)
                      |+++++++...    +.+++.++ ++|++||++|. ..+..++++++++|+++.+|....      ....+...++.++.
T Consensus       228 Ga~~vi~~~~~----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~~  296 (360)
T PLN02586        228 GADSFLVSTDP----EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEK------PLELPIFPLVLGRK  296 (360)
T ss_pred             CCcEEEcCCCH----HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCC------CCccCHHHHHhCCe
Confidence            99888876642    23444443 69999999997 678899999999999999986421      12244555666777


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+.++..++     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       297 ~i~g~~~~~-----~~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        297 LVGGSDIGG-----IKETQEMLDFCAKHNITADI-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             EEEEcCcCC-----HHHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            777766544     45689999999999999876 4799999999999999998889999976

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=7.4e-35  Score=238.62  Aligned_cols=257  Identities=25%  Similarity=0.378  Sum_probs=203.4

Q ss_pred             CccceEEEE---ec-CCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc-
Q 024411            4 ISGYGVAKV---LD-SENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC-   75 (268)
Q Consensus         4 ~~~~G~v~~---vG-~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~-   75 (268)
                      .+|.|++..   +| ..+..+..||.+...   |+|+||.++++..++++ |+++++. ++|++|.+..|||.++...+ 
T Consensus        71 ~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~-P~~l~~~-~aa~~p~~~~tA~~al~~~~~  148 (347)
T KOG1198|consen   71 RDGSGVVGAVESVGDDVVGGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKI-PESLSFE-EAAALPLAALTALSALFQLAP  148 (347)
T ss_pred             cccCCceeEEeccccccccceEeeeEEeeccCCCceeeEEEcchhhccCC-CCccChh-hhhcCchHHHHHHHHHHhccc
Confidence            445555333   34 444557777777776   89999999999999999 9995554 48899999999999999999 


Q ss_pred             -----CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           76 -----SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        76 -----~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                           +++++++|||+||+|++|++++|+|++.++..++++.++++.++++ ++|+++++||+++ ++.+.++..++++|
T Consensus       149 ~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k-~lGAd~vvdy~~~-~~~e~~kk~~~~~~  226 (347)
T KOG1198|consen  149 GKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVK-KLGADEVVDYKDE-NVVELIKKYTGKGV  226 (347)
T ss_pred             cccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHH-HcCCcEeecCCCH-HHHHHHHhhcCCCc
Confidence                 8999999999999999999999999999965555555899999999 9999999999997 99999999884499


Q ss_pred             cEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeee--EEecc----cccchHHHHHHH
Q 024411          151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG--FIVLD----HYHLYPKFLEMI  224 (268)
Q Consensus       151 d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~  224 (268)
                      |+|+||+|+........++..+|+...++...+...+....  ..+. ..+.+++..  ....+    +.....+.++.+
T Consensus       227 DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  303 (347)
T KOG1198|consen  227 DVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGDELANYKLD--DLWQ-SANGIKLYSLGLKGVNYRWLYFVPSAEYLKAL  303 (347)
T ss_pred             cEEEECCCCCccccchhhhccCCceEEEEeccccccccccc--cchh-hhhhhhheeeeeeccceeeeeecCCHHHHHHH
Confidence            99999999988888899999888766666544332221111  1111 111111111  11111    144567889999


Q ss_pred             HHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          225 IPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       225 ~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      .+++.+++++|.+.++||++++++|++.+.+++.+||++++++
T Consensus       304 ~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  304 VELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             HHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence            9999999999999999999999999999999999999999875

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-34  Score=238.20  Aligned_cols=252  Identities=22%  Similarity=0.237  Sum_probs=202.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|+++++|++||+|++                              .|+|+||++++.+.++++ |+++  
T Consensus        59 ~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l-P~~~--  135 (347)
T PRK10309         59 HEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFAL-PTDM--  135 (347)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEEC-cCCC--
Confidence            4679999999999999999999986                              278999999999999999 8884  


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      +++.+++..+..++++++ ....+.++++|+|+|+ |++|++++|+|+.+|++ |+++++++++.+.++ ++|+++++++
T Consensus       136 s~~~aa~~~~~~~~~~~~-~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~  212 (347)
T PRK10309        136 PIEDGAFIEPITVGLHAF-HLAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAK-SLGAMQTFNS  212 (347)
T ss_pred             CHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCceEecC
Confidence            444333333566788886 5567899999999985 99999999999999996 788888999999998 8999988888


Q ss_pred             CChhhHHHHHHHHCCC-Ccc-EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          133 KEEADLNAALKRYFPE-GID-IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d-~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      ++. . ...+.+.+.+ ++| +++||+|+ ..+..++++++++|+++.+|...+. .  ......+..++.+++++.|+.
T Consensus       213 ~~~-~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-~--~~~~~~~~~~~~~~~~i~g~~  287 (347)
T PRK10309        213 REM-S-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHD-L--HLTSATFGKILRKELTVIGSW  287 (347)
T ss_pred             ccc-C-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC-c--ccChhhhhHHhhcCcEEEEEe
Confidence            764 4 4556666665 888 99999997 6889999999999999999874321 1  011112345677889999876


Q ss_pred             ecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .........+.++++++++.+|.++  +.++++|+|+++++|++.+.+++..||+++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        288 MNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             ccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            5422112246788899999999884  67888999999999999999988889999976

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=6.2e-34  Score=238.91  Aligned_cols=242  Identities=17%  Similarity=0.208  Sum_probs=200.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      -|++|+|.++|+++++|++||+|+.                                      .|+|+||++++++.+++
T Consensus        66 hE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~  145 (375)
T PLN02178         66 HEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLS  145 (375)
T ss_pred             ceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEE
Confidence            3679999999999999999999963                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHh
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKNK  123 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~~  123 (268)
                      + |++++.. +++++++...|+|+++..... .+++++|+|.|+ |++|++++|+|+.+|++|+++++++++ .+.++ +
T Consensus       146 l-P~~ls~~-~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~  221 (375)
T PLN02178        146 I-PDGLPSD-SGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-R  221 (375)
T ss_pred             C-CCCCCHH-HcchhhccchHHHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-h
Confidence            9 9885544 377888999999999865433 368999999986 999999999999999999999877654 67776 8


Q ss_pred             cCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcc
Q 024411          124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKR  202 (268)
Q Consensus       124 ~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  202 (268)
                      +|+++++++.+.    +.+.+.++ ++|+++||+|. ..+..++++++++|+++.+|...+      ...++...++.++
T Consensus       222 lGa~~~i~~~~~----~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~  290 (375)
T PLN02178        222 LGADSFLVTTDS----QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK------PLDLPIFPLVLGR  290 (375)
T ss_pred             CCCcEEEcCcCH----HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC------CCccCHHHHHhCC
Confidence            999988876542    24444443 69999999998 478999999999999999987421      1234556777889


Q ss_pred             eeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          203 LRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +++.|+...+     .+.++++++++.+|++++.+ .+|+|+++++||+.+.+++..||+|+.+
T Consensus       291 ~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        291 KMVGGSQIGG-----MKETQEMLEFCAKHKIVSDI-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             eEEEEeCccC-----HHHHHHHHHHHHhCCCcccE-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            9998876654     46788899999999999877 4699999999999999998889999986

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.3e-33  Score=238.22  Aligned_cols=251  Identities=18%  Similarity=0.223  Sum_probs=205.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------------------------------c
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------------------------------M   29 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------------------------------~   29 (268)
                      -|++|+|+++|+++++|++||+|++                                                      .
T Consensus        71 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  150 (381)
T PLN02740         71 HEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNT  150 (381)
T ss_pred             ccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccC
Confidence            4679999999999999999999974                                                      2


Q ss_pred             cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEE
Q 024411           30 TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVV  108 (268)
Q Consensus        30 g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~  108 (268)
                      |+|+||++++.+.++++ |++++.. .++.+.+++.|||+++...++++++++|||+|+ |++|++++|+|+.+|+ +|+
T Consensus       151 G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi  227 (381)
T PLN02740        151 STFTEYTVLDSACVVKI-DPNAPLK-KMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKII  227 (381)
T ss_pred             ccceeEEEEehHHeEEC-CCCCCHH-HhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEE
Confidence            68999999999999999 8885544 377788899999999877788999999999996 9999999999999999 699


Q ss_pred             EEeCCHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEccccccc
Q 024411          109 GSAGSKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYN  185 (268)
Q Consensus       109 ~~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~  185 (268)
                      ++++++++.+.++ ++|+++++++.+. .++.+.+++.+++++|+++|++|+ ..+..++.+++++ |+++.+|...+. 
T Consensus       228 ~~~~~~~r~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~-  305 (381)
T PLN02740        228 GVDINPEKFEKGK-EMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP-  305 (381)
T ss_pred             EEcCChHHHHHHH-HcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC-
Confidence            9999999999998 9999888887653 147777877766589999999997 7889999999996 999999874321 


Q ss_pred             CCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEE
Q 024411          186 LDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQV  263 (268)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv  263 (268)
                         .........+ .++.++.|+....+..  ...+.++++++.++.+++  .++++|+|+++++|++.+.+++. .|++
T Consensus       306 ---~~~~~~~~~~-~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~  378 (381)
T PLN02740        306 ---KMLPLHPMEL-FDGRSITGSVFGDFKG--KSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCL  378 (381)
T ss_pred             ---ceecccHHHH-hcCCeEEEEecCCCCc--HHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEE
Confidence               1111222223 3678888876654321  356888999999998864  57889999999999999988765 4998


Q ss_pred             EEe
Q 024411          264 VAV  266 (268)
Q Consensus       264 i~~  266 (268)
                      |+.
T Consensus       379 ~~~  381 (381)
T PLN02740        379 LHL  381 (381)
T ss_pred             EeC
Confidence            863

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.4e-33  Score=235.47  Aligned_cols=251  Identities=20%  Similarity=0.234  Sum_probs=201.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|+++|+++++|++||+|+..                                                   |+|
T Consensus        61 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~  140 (368)
T TIGR02818        61 HEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTF  140 (368)
T ss_pred             cccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccc
Confidence            56899999999999999999999752                                                   489


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++.+.++++ |++++.. +++.+++++.+||+++...++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       141 aey~~v~~~~~~~l-P~~l~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~  217 (368)
T TIGR02818       141 SEYTVVPEISLAKI-NPAAPLE-EVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAID  217 (368)
T ss_pred             eeeEEechhheEEC-CCCCCHH-HhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999 8885554 377888899999999977788999999999986 9999999999999999 799999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCC-hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKE-EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  188 (268)
                      +++++.+.++ ++|+++++++.+ ..++.+.+++.+++++|+++||+|+ ..+..++++++++ |+++.+|...+.    
T Consensus       218 ~~~~~~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~----  292 (368)
T TIGR02818       218 INPAKFELAK-KLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAG----  292 (368)
T ss_pred             CCHHHHHHHH-HhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCC----
Confidence            9999999998 999998888764 1156677777776689999999997 6788999999886 999999874311    


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .........++ .+..+.++.....  .....+.++++++.+|+++  +.++++|+|+++++|++.+.+++. .|+++.+
T Consensus       293 ~~~~~~~~~~~-~~~~~~g~~~~~~--~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       293 QEISTRPFQLV-TGRVWRGSAFGGV--KGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             CcccccHHHHh-ccceEEEeeccCC--CcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            11112222333 2334555543221  1245688899999999885  467889999999999999988764 6998874

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.9e-33  Score=232.60  Aligned_cols=235  Identities=17%  Similarity=0.110  Sum_probs=197.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|+++++|++||+|+.                               .|+|+||+.++.+.++++ |++++
T Consensus        62 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l-P~~~~  140 (329)
T TIGR02822        62 HEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRL-PTGYD  140 (329)
T ss_pred             cceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEEC-CCCCC
Confidence            5789999999999999999999973                               278999999999999999 88855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. +++.+++++.|||+++. .++++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ ++|+++++++
T Consensus       141 ~~-~aa~l~~~~~ta~~~~~-~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~-~~Ga~~vi~~  216 (329)
T TIGR02822       141 DV-ELAPLLCAGIIGYRALL-RASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLAL-ALGAASAGGA  216 (329)
T ss_pred             HH-HhHHHhccchHHHHHHH-hcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HhCCceeccc
Confidence            44 37788899999999995 578999999999997 99999999999999999999999999999999 9999998875


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      .+. .         .+++|+++++.+. ..+..++++++++|+++.+|...+.     ...++...++.+++++.++...
T Consensus       217 ~~~-~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~  281 (329)
T TIGR02822       217 YDT-P---------PEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTD-----TPPLNYQRHLFYERQIRSVTSN  281 (329)
T ss_pred             ccc-C---------cccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCcc-----CCCCCHHHHhhCCcEEEEeecC
Confidence            431 1         1258999988875 7889999999999999999874221     1123455667788888887644


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      .     .+.+.++++++.+|++++ ++++|+|+++++||+.+.+++..||+|+
T Consensus       282 ~-----~~~~~~~~~l~~~g~i~~-i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       282 T-----RADAREFLELAAQHGVRV-TTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             C-----HHHHHHHHHHHHhCCCee-EEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            3     556788899999999985 5678999999999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.9e-33  Score=234.05  Aligned_cols=243  Identities=23%  Similarity=0.262  Sum_probs=207.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|++++.|++||+|++                               .|+|+||+.++.+.++++ |+++ 
T Consensus        70 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l-P~~~-  147 (351)
T cd08233          70 HEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKL-PDNV-  147 (351)
T ss_pred             ccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEEC-cCCC-
Confidence            4689999999999999999999985                               378999999999999999 8884 


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                       +++.+++..+..+||+++ ..++++++++|+|+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|++.+++
T Consensus       148 -~~~~aa~~~~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~-~~ga~~~i~  223 (351)
T cd08233         148 -PLEEAALVEPLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAE-ELGATIVLD  223 (351)
T ss_pred             -CHHHhhhccHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEC
Confidence             434444457888999999 6778999999999986 9999999999999999 8999998999999998 899999999


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +++. ++.+.+++.+++ ++|+++|++|. ..+..++++++++|+++.+|...      .....+...++.+++++.++.
T Consensus       224 ~~~~-~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~------~~~~~~~~~~~~~~~~i~g~~  296 (351)
T cd08233         224 PTEV-DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWE------KPISFNPNDLVLKEKTLTGSI  296 (351)
T ss_pred             CCcc-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCC------CCCccCHHHHHhhCcEEEEEe
Confidence            8876 788888888776 79999999996 78899999999999999998743      112345667778899998876


Q ss_pred             ecccccchHHHHHHHHHHHHcCCce--eeeehhcccccH-HHHHHHHHcCCcc-ceEEE
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESA-PAALIGLFSGQNV-GKQVV  264 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~-~~a~~~~~~~~~~-gkvvi  264 (268)
                      .+.     .+.++++++++.+|.++  +.+.++|+++++ ++|++.+.+++.. +|+||
T Consensus       297 ~~~-----~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         297 CYT-----REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             ccC-----cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence            543     56789999999999995  457788999996 7999999988864 89987

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=6.2e-33  Score=233.44  Aligned_cols=249  Identities=19%  Similarity=0.239  Sum_probs=204.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------------------------------------cc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------------------TG   31 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------------------g~   31 (268)
                      .|++|+|+++|+++++|++||+|+..                                                    |+
T Consensus        62 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~  141 (369)
T cd08301          62 HEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTST  141 (369)
T ss_pred             cccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeecccc
Confidence            57899999999999999999999853                                                    57


Q ss_pred             cceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEE
Q 024411           32 WEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGS  110 (268)
Q Consensus        32 ~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~  110 (268)
                      |+||+++++..++++ |++++.. +++.+++++.+||+++...++++++++|||+|+ |++|++++|+|+.+|+ +|+++
T Consensus       142 ~aey~~v~~~~~~~i-P~~~~~~-~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~  218 (369)
T cd08301         142 FSEYTVVHVGCVAKI-NPEAPLD-KVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGV  218 (369)
T ss_pred             ceeEEEEecccEEEC-CCCCCHH-HhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Confidence            999999999999999 8885554 377888889999999888888999999999986 9999999999999999 89999


Q ss_pred             eCCHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCC
Q 024411          111 AGSKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLD  187 (268)
Q Consensus       111 ~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  187 (268)
                      ++++++.+.++ ++|++.++++... +.+.+.+++.+++++|+++|++|. ..+..++++++++ |+++.+|.....   
T Consensus       219 ~~~~~~~~~~~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~---  294 (369)
T cd08301         219 DLNPSKFEQAK-KFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKD---  294 (369)
T ss_pred             cCCHHHHHHHH-HcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCC---
Confidence            99999999998 8999888877641 156677777766689999999997 6788999999996 999999875421   


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                       .........+ .+++++.|+....+.  ....++++++++.++.++.  .++++|+|+++++||+.+.+++.. |+++
T Consensus       295 -~~~~~~~~~~-~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         295 -AVFSTHPMNL-LNGRTLKGTLFGGYK--PKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             -cccccCHHHH-hcCCeEEEEecCCCC--hHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence             1112222333 368888887665432  2456888999999998764  477889999999999999988764 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=6.3e-33  Score=232.08  Aligned_cols=244  Identities=20%  Similarity=0.192  Sum_probs=202.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      .|++|+|+++|+++++|++||+|+.                                      .|+|+||++++.+.+++
T Consensus        69 ~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~  148 (357)
T PLN02514         69 HEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVK  148 (357)
T ss_pred             ceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEE
Confidence            3679999999999999999999963                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g  125 (268)
                      + |++++.. +++++++.+.+||+++......+++++++|+|+ |++|++++|+|+.+|++|+++++++++...+.+++|
T Consensus       149 i-P~~~~~~-~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~G  225 (357)
T PLN02514        149 I-PEGMAPE-QAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLG  225 (357)
T ss_pred             C-CCCCCHH-HhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcC
Confidence            9 8885554 377899999999999977666789999999975 999999999999999999999888877766654799


Q ss_pred             CCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          126 FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      +++++++...    ..+.+.+. ++|+++||+|. ..+..++++++++|+++.+|...+      ....+...++.++++
T Consensus       226 a~~~i~~~~~----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~  294 (357)
T PLN02514        226 ADDYLVSSDA----AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT------PLQFVTPMLMLGRKV  294 (357)
T ss_pred             CcEEecCCCh----HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC------CCcccHHHHhhCCcE
Confidence            9877765442    23444333 69999999996 688899999999999999987431      123445667788899


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +.|+....     ...++++++++.+|++++.++ +|+++++++||+.+.+++..||+++.+.
T Consensus       295 i~g~~~~~-----~~~~~~~~~~~~~g~l~~~i~-~~~l~~~~~A~~~~~~~~~~gk~v~~~~  351 (357)
T PLN02514        295 ITGSFIGS-----MKETEEMLEFCKEKGLTSMIE-VVKMDYVNTAFERLEKNDVRYRFVVDVA  351 (357)
T ss_pred             EEEEecCC-----HHHHHHHHHHHHhCCCcCcEE-EEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence            99887655     457889999999999988774 7999999999999999988899999874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=6.8e-33  Score=232.97  Aligned_cols=250  Identities=23%  Similarity=0.293  Sum_probs=202.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      .|++|+|+++|+++++|++||+|++.                                                   |+|
T Consensus        62 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~  141 (368)
T cd08300          62 HEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTF  141 (368)
T ss_pred             cceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccc
Confidence            47899999999999999999999753                                                   479


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||+.++.+.++++ |++++.. .++.+++++.+||+++...++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       142 aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~  218 (368)
T cd08300         142 SEYTVVAEISVAKI-NPEAPLD-KVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGID  218 (368)
T ss_pred             eeEEEEchhceEeC-CCCCChh-hhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEe
Confidence            99999999999999 8885554 377888899999999877788999999999986 9999999999999999 799999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCChh-hHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEEA-DLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  188 (268)
                      +++++.+.++ ++|+++++++.+.+ ++.+.+.+.+++++|+++|++|+ ..+..++++++++ |+++.+|...+.    
T Consensus       219 ~~~~~~~~~~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~----  293 (368)
T cd08300         219 INPDKFELAK-KFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAG----  293 (368)
T ss_pred             CCHHHHHHHH-HcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCC----
Confidence            9999999998 99999999887531 47777887776689999999997 6889999999886 999999874311    


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .........+. .+..+.++....+.  ..+.+.++++++.+|++++  .++++|+|+++++||+.+.+++. .|++++
T Consensus       294 ~~~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         294 QEISTRPFQLV-TGRVWKGTAFGGWK--SRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             CccccCHHHHh-hcCeEEEEEecccC--cHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence            01111222222 33455665544332  2566888999999999875  57789999999999999988764 588874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=6.4e-33  Score=229.61  Aligned_cols=252  Identities=19%  Similarity=0.227  Sum_probs=213.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .|++|+|+++|++++.+++||+|+++   |+|++|++++...++++ |++++.. +++.++....+||+++. ..++.++
T Consensus        64 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~i-p~~~~~~-~aa~~~~~~~ta~~~~~-~~~~~~g  140 (324)
T cd08292          64 SEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTWAEYFVAPADGLVPL-PDGISDE-VAAQLIAMPLSALMLLD-FLGVKPG  140 (324)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEeccCCCcceeEEEEchHHeEEC-CCCCCHH-HhhhccccHHHHHHHHH-hhCCCCC
Confidence            46799999999999999999999985   89999999999999999 8885444 36777888899999984 5789999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      +++||+|++|.+|++++|+|+.+|++++++++++++.+.++ ++|+++++++++. ++...+.+.+++ ++|+++||+|+
T Consensus       141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~  218 (324)
T cd08292         141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR-ALGIGPVVSTEQP-GWQDKVREAAGGAPISVALDSVGG  218 (324)
T ss_pred             CEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-hcCCCEEEcCCCc-hHHHHHHHHhCCCCCcEEEECCCC
Confidence            99999999999999999999999999999999999999888 7898888888876 788888888887 99999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-----cchHHHHHHHHHHHHcCCce
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-----HLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~l~  234 (268)
                      .....++++++++|+++.+|...+     .....+....+.+++++.++....+.     ....+.++++++++.+|.++
T Consensus       219 ~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~  293 (324)
T cd08292         219 KLAGELLSLLGEGGTLVSFGSMSG-----EPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLL  293 (324)
T ss_pred             hhHHHHHHhhcCCcEEEEEecCCC-----CCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCcc
Confidence            888899999999999999986421     11223444566789999988765431     22356788899999999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+..+|+++++++|++.+.++...+|++++
T Consensus       294 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         294 LPVEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             CccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            6667789999999999999988888898863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=8.4e-33  Score=230.89  Aligned_cols=245  Identities=19%  Similarity=0.251  Sum_probs=203.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCC----
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHT----   49 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~----   49 (268)
                      -|++|+|.++|++++.+ +||+|+.                              .|+|+||++++.+.++++ |+    
T Consensus        59 hE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~i-p~~~~~  136 (349)
T TIGR03201        59 HEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVV-DEARLA  136 (349)
T ss_pred             ccceEEEEEeCCCcCCC-CCCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEEC-Cccccc
Confidence            47899999999999887 9999985                              279999999999999999 76    


Q ss_pred             --CCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 024411           50 --DVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        50 --~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                        +++.. .++++++++.++|+++.. ..++++++|+|+|+ |++|++++|+|+..|++|+++++++++.+.++ ++|++
T Consensus       137 ~~~~~~~-~~a~~~~~~~ta~~a~~~-~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~  212 (349)
T TIGR03201       137 AAGLPLE-HVSVVADAVTTPYQAAVQ-AGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK-GFGAD  212 (349)
T ss_pred             ccCCCHH-HhhhhcchHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCc
Confidence              64443 367888999999999864 68999999999998 99999999999999999999999999999998 89998


Q ss_pred             eeeecCCh--hhHHHHHHHHCCC-Ccc----EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHH
Q 024411          128 EAFNYKEE--ADLNAALKRYFPE-GID----IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLV  199 (268)
Q Consensus       128 ~v~~~~~~--~~~~~~~~~~~~~-~~d----~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  199 (268)
                      +++++.+.  +++.+.+++.+++ ++|    +++||+|+ ..+..++++++++|+++.+|...+      ....+...++
T Consensus       213 ~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~  286 (349)
T TIGR03201       213 LTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA------KTEYRLSNLM  286 (349)
T ss_pred             eEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC------CcccCHHHHh
Confidence            88887652  1466777777776 776    89999998 567789999999999999987432      1233445666


Q ss_pred             hcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          200 SKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++.++.+....+     .+.++++++++.+|++++  .++ +|+|+++++||+.+.+++..||+++++
T Consensus       287 ~~~~~~~g~~~~~-----~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       287 AFHARALGNWGCP-----PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             hcccEEEEEecCC-----HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence            6777777765433     567889999999999865  444 689999999999999998889998853

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.6e-33  Score=215.50  Aligned_cols=249  Identities=21%  Similarity=0.257  Sum_probs=212.3

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec----------------------------------------------------ccc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------------------TGW   32 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------------------g~~   32 (268)
                      |++|+|+.||++|+++++||+|+..                                                    .+|
T Consensus        68 EaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StF  147 (375)
T KOG0022|consen   68 EAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTF  147 (375)
T ss_pred             cceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccc
Confidence            6799999999999999999999632                                                    379


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||.+++...+.++ ++..|++ ..+.|.+...|.|.|..+.+.+++|+++.|+|- |++|+++++-|+..|+ +++.++
T Consensus       148 sEYTVv~~~~v~kI-d~~aPl~-kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgvD  224 (375)
T KOG0022|consen  148 SEYTVVDDISVAKI-DPSAPLE-KVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGVD  224 (375)
T ss_pred             eeEEEeecceeEec-CCCCChh-heeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEEe
Confidence            99999999999999 4454555 488899999999999999999999999999997 9999999999999999 999999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  188 (268)
                      -++++++.++ ++|+++.+|..+. ...++.+++++.+++|+-|||+|+ ..+++++.+.+.+ |+-|.+|....    .
T Consensus       225 iN~~Kf~~ak-~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~----~  299 (375)
T KOG0022|consen  225 INPDKFEKAK-EFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAA----G  299 (375)
T ss_pred             cCHHHHHHHH-hcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCC----C
Confidence            9999999999 9999998888741 158889999999999999999999 8889999999997 99999997542    1


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      ......+.+++ .+.++.|+..+.+..  ++++..+++.+.+++++  ..+++.+||+++++||+.|.+++.. |.|+.
T Consensus       300 ~~i~~~p~~l~-~GR~~~Gs~FGG~K~--~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  300 QEISTRPFQLV-TGRTWKGSAFGGFKS--KSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             cccccchhhhc-cccEEEEEecccccc--hhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence            22333444544 467788888777643  77899999999999775  5688899999999999999999877 66654

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=2.2e-32  Score=229.62  Aligned_cols=248  Identities=19%  Similarity=0.252  Sum_probs=201.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------------------------------------------------cccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------------------------------------------------TGWE   33 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------------------------------------------------g~~~   33 (268)
                      .|++|+|+++|++++++++||+|++.                                                  |+|+
T Consensus        61 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a  140 (365)
T cd08277          61 HEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFS  140 (365)
T ss_pred             cceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccce
Confidence            47899999999999999999999763                                                  6899


Q ss_pred             eeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeC
Q 024411           34 EYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAG  112 (268)
Q Consensus        34 ~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~  112 (268)
                      ||++++.+.++++ |++++.. +++.+.+++.+||+++...+.++++++|+|+|+ |++|++++|+|+.+|+ +|+++++
T Consensus       141 e~~~v~~~~~~~l-P~~l~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~  217 (365)
T cd08277         141 QYTVVDENYVAKI-DPAAPLE-HVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDI  217 (365)
T ss_pred             eeEEEchhheEEC-CCCCCHH-HhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999 8885544 377888899999999877788999999999985 9999999999999999 7999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCCC
Q 024411          113 SKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDKP  189 (268)
Q Consensus       113 ~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~  189 (268)
                      ++++.+.++ ++|++++++..+. .++.+.+++.+++++|+++||+|+ ..+..++++++++ |+++.+|...+..    
T Consensus       218 ~~~~~~~~~-~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~----  292 (365)
T cd08277         218 NEDKFEKAK-EFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAE----  292 (365)
T ss_pred             CHHHHHHHH-HcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccc----
Confidence            999999998 8999888887652 135666777666689999999996 7788999999885 9999998753211    


Q ss_pred             ccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          190 EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                       ...+...++. +.++.++..+.+.  ....++++++++.++.++  +.++++|+|+++++|++.+.+++ ..|+++
T Consensus       293 -~~~~~~~~~~-~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i  364 (365)
T cd08277         293 -LSIRPFQLIL-GRTWKGSFFGGFK--SRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVI  364 (365)
T ss_pred             -cccCHhHHhh-CCEEEeeecCCCC--hHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEee
Confidence             1122333433 6788877665432  244678899999988755  56788999999999999998877 458876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=5.1e-32  Score=227.38  Aligned_cols=248  Identities=21%  Similarity=0.223  Sum_probs=200.3

Q ss_pred             CccceEEEEecCCCCC------CCCCCeEEec-------------------------------------cccceeEeecC
Q 024411            4 ISGYGVAKVLDSENPE------FNKGDLVWGM-------------------------------------TGWEEYSLITA   40 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~------~~~Gd~V~~~-------------------------------------g~~~~~~~v~~   40 (268)
                      .|++|+|.++|++++.      |++||+|+.+                                     |+|+||+.+++
T Consensus        60 ~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~  139 (361)
T cd08231          60 HEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPP  139 (361)
T ss_pred             cCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecC
Confidence            4679999999999986      9999999764                                     78999999999


Q ss_pred             C-cceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 024411           41 P-HLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVD  118 (268)
Q Consensus        41 ~-~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~  118 (268)
                      + .++++ |++++.. .++.+++++.|||+++......+++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus       140 ~~~~~~l-P~~~~~~-~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         140 GTAIVRV-PDNVPDE-VAAPANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCceEEC-CCCCCHH-HHHHhcCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            7 69999 8884433 366777999999999987776779999999985 9999999999999999 9999999999999


Q ss_pred             HHHHhcCCCeeeecCChhhH---HHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCcccc
Q 024411          119 LLKNKFGFDEAFNYKEEADL---NAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH  193 (268)
Q Consensus       119 ~~~~~~g~~~v~~~~~~~~~---~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  193 (268)
                      .++ ++|++.+++++.. .+   ...+.+.+++ ++|+++||+|+ ..+..++++++++|+++.+|.....    .....
T Consensus       217 ~~~-~~g~~~vi~~~~~-~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~  290 (361)
T cd08231         217 LAR-EFGADATIDIDEL-PDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPA----GTVPL  290 (361)
T ss_pred             HHH-HcCCCeEEcCccc-ccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCC----Ccccc
Confidence            988 8999888877653 32   3467777766 89999999987 6788999999999999999864311    11223


Q ss_pred             chHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcC----CceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          194 NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEG----KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ....++.+++++.++...+     .+.++++++++.++    .+.+.+.++|+++++++||+.+.+++. +|++|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~  361 (361)
T cd08231         291 DPERIVRKNLTIIGVHNYD-----PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-LKVVIDP  361 (361)
T ss_pred             CHHHHhhcccEEEEcccCC-----chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence            3445678888888876543     44567777777766    345567788999999999999988764 7999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=4.9e-32  Score=230.54  Aligned_cols=250  Identities=17%  Similarity=0.136  Sum_probs=196.9

Q ss_pred             CccceEEEEecCCCC-CCCCCCeEEec-------------------cccceeEeecCC----cceeecCCCCCchhhhhh
Q 024411            4 ISGYGVAKVLDSENP-EFNKGDLVWGM-------------------TGWEEYSLITAP----HLFKIQHTDVPLSYYTGI   59 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~-~~~~Gd~V~~~-------------------g~~~~~~~v~~~----~~~~~~p~~~~~~~~~a~   59 (268)
                      -|++|+|+++|++|+ +|++||||+..                   |+|+||++++.+    .++++ |+++  +++.++
T Consensus        68 hE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~l-P~~l--~~~~aa  144 (410)
T cd08238          68 HEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLI-YEGD--GYAEAS  144 (410)
T ss_pred             cccEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEEC-CCCC--CHHHHh
Confidence            367999999999998 59999999762                   899999999997    58999 8884  434444


Q ss_pred             ccchHH---HHHHHh--------hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhc-
Q 024411           60 LGMPGM---TAYVGF--------YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC---YVVGSAGSKDKVDLLKNKF-  124 (268)
Q Consensus        60 l~~~~~---~a~~~l--------~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~---~V~~~~~~~~~~~~~~~~~-  124 (268)
                      +..+..   +++.++        ...++++++++|+|+|++|++|++++|+|+.+|+   +|+++++++++.+.++ ++ 
T Consensus       145 l~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~-~~~  223 (410)
T cd08238         145 LVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ-RLF  223 (410)
T ss_pred             hcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH-Hhc
Confidence            433322   233332        2346789999999999889999999999999864   8999999999999998 65 


Q ss_pred             -------CCC-eeeecCC-hhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCcccc
Q 024411          125 -------GFD-EAFNYKE-EADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH  193 (268)
Q Consensus       125 -------g~~-~v~~~~~-~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  193 (268)
                             |++ .++++.. . ++.+.+++.+++ ++|+++|++|. ..+..++++++++|+++.++.....   .....+
T Consensus       224 ~~~~~~~Ga~~~~i~~~~~~-~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~---~~~~~~  299 (410)
T cd08238         224 PPEAASRGIELLYVNPATID-DLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDK---NFSAPL  299 (410)
T ss_pred             cccccccCceEEEECCCccc-cHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCC---Cccccc
Confidence                   655 4677654 3 677788888777 89999999986 8889999999999988776442110   011234


Q ss_pred             chHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          194 NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +...++.+++++.|+....     ...++++++++.+|++++  .++++|+|+++++|++.+. ++..||+|+.++
T Consensus       300 ~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~  369 (410)
T cd08238         300 NFYNVHYNNTHYVGTSGGN-----TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQ  369 (410)
T ss_pred             cHHHhhhcCcEEEEeCCCC-----HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECC
Confidence            5567788999999876544     567889999999999987  6788999999999999999 777899999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.2e-31  Score=227.54  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=206.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|++++.+++||+|++.                               |+|++|++++.+.++++ |++++
T Consensus        87 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~i-P~~l~  165 (393)
T cd08246          87 SDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPK-PKHLS  165 (393)
T ss_pred             cceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEEC-CCCCC
Confidence            46789999999999999999999864                               78999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhhh--cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF  130 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~--~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~  130 (268)
                      .. +++.+++++.+||+++...  ++++++++++|+|++|++|++++++++.+|++++++++++++.+.++ ++|+++++
T Consensus       166 ~~-~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~-~~G~~~~i  243 (393)
T cd08246         166 WE-EAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCR-ALGAEGVI  243 (393)
T ss_pred             HH-HHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCCEEE
Confidence            44 3678899999999998755  67899999999999999999999999999999999999999999998 89998888


Q ss_pred             ecCCh---------------------hhHHHHHHHHCCC--CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCC
Q 024411          131 NYKEE---------------------ADLNAALKRYFPE--GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLD  187 (268)
Q Consensus       131 ~~~~~---------------------~~~~~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  187 (268)
                      ++++.                     ..+.+.+.+.+++  ++|+++||+|+..+..++++++++|+++.+|.....   
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~---  320 (393)
T cd08246         244 NRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGY---  320 (393)
T ss_pred             cccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCC---
Confidence            76431                     0245667777665  699999999998889999999999999999864321   


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcC-CccceEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSG-QNVGKQVV  264 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi  264 (268)
                        ....+...++.++.++.+.....     .+.+.++++++.++.+.+.+.++++++++++|++.+.++ +..||+++
T Consensus       321 --~~~~~~~~l~~~~~~i~g~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv  391 (393)
T cd08246         321 --NHTYDNRYLWMRQKRIQGSHFAN-----DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMAV  391 (393)
T ss_pred             --CCCCcHHHHhhheeEEEecccCc-----HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccceEEE
Confidence              11233455666777777765544     456888999999999988777889999999999999988 78899886

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=1.6e-31  Score=221.28  Aligned_cols=253  Identities=23%  Similarity=0.287  Sum_probs=213.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      .+++|+|+++|++++.+++||+|+++     |+|++|++++.+.++++ |++++.. +++++++.+++|| ++....+++
T Consensus        65 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~l-p~~~~~~-~a~~~~~~~~ta~-~~~~~~~~~  141 (324)
T cd08244          65 GEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPV-PDGLDLE-AAVAVVHDGRTAL-GLLDLATLT  141 (324)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeC-CCCCCHH-HHhhhcchHHHHH-HHHHhcCCC
Confidence            46789999999999999999999984     79999999999999999 8885544 3778899999995 555677899


Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~  157 (268)
                      ++++++|+|++|++|++++++|+.+|++|+++++++++.+.++ ++|+++++++.+. ++.+.+.+.+++ ++|+++|++
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vl~~~  219 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR-ALGADVAVDYTRP-DWPDQVREALGGGGVTVVLDGV  219 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEecCCc-cHHHHHHHHcCCCCceEEEECC
Confidence            9999999999999999999999999999999999999999997 8999888888776 777788877776 899999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCceee
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLVYV  236 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~  236 (268)
                      |+.....++++++++|+++.+|.....     ....+....+.+++++.++..... +....+.++++.+++.++.+++.
T Consensus       220 g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  294 (324)
T cd08244         220 GGAIGRAALALLAPGGRFLTYGWASGE-----WTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPV  294 (324)
T ss_pred             ChHhHHHHHHHhccCcEEEEEecCCCC-----CCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCc
Confidence            998789999999999999999874321     112333455788888888776543 22345678888999999999877


Q ss_pred             eehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          237 EDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       237 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +...++++++++|++.+.++...||+++++
T Consensus       295 ~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         295 VGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             cceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            778899999999999999999999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=3.7e-32  Score=208.00  Aligned_cols=255  Identities=23%  Similarity=0.295  Sum_probs=209.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      =||.|.|+.||++++.|++||.|+..    |+|++|.+.+++.++++ ++.+++. .||++....+|||..|...-++++
T Consensus        83 nEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~v-d~~~pl~-~AAT~~VNP~TAyrmL~dfv~L~~  160 (354)
T KOG0025|consen   83 NEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKV-DKDIPLA-SAATLSVNPCTAYRMLKDFVQLNK  160 (354)
T ss_pred             CcceEEEEEecCCcCccCCCCeEeecCCCCccceeeEeecccceEEc-CCcCChh-hhheeccCchHHHHHHHHHHhcCC
Confidence            36788899999999999999999876    89999999999999999 7777766 599999999999999999999999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCC-CccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d  155 (268)
                      |++|+-.||++++|++++|+|+.+|++-+-+.|+-.+++++++   .+|+++|+...+- .-.+..+..... .+.+.||
T Consensus       161 GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel-~~~~~~k~~~~~~~prLalN  239 (354)
T KOG0025|consen  161 GDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEEL-RDRKMKKFKGDNPRPRLALN  239 (354)
T ss_pred             CCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHh-cchhhhhhhccCCCceEEEe
Confidence            9999999999999999999999999999988887777666543   5799999854431 111122222223 7899999


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc------ccchHHHHHHHHHHHH
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH------YHLYPKFLEMIIPHIK  229 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  229 (268)
                      |+|+.......+.|..||..+.+|..+.     .........++.+++++.|++...|      ++...+.+.++.+++.
T Consensus       240 cVGGksa~~iar~L~~GgtmvTYGGMSk-----qPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~  314 (354)
T KOG0025|consen  240 CVGGKSATEIARYLERGGTMVTYGGMSK-----QPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYR  314 (354)
T ss_pred             ccCchhHHHHHHHHhcCceEEEecCccC-----CCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHH
Confidence            9999988999999999999999998653     3344556677899999999999887      3334567889999999


Q ss_pred             cCCceeeeehhcccccHHHHHHHHHcC-CccceEEEEe
Q 024411          230 EGKLVYVEDMAEGLESAPAALIGLFSG-QNVGKQVVAV  266 (268)
Q Consensus       230 ~g~l~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~  266 (268)
                      .|+++.+.....+|++...|++...+. ...||-++.+
T Consensus       315 ~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  315 RGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             cCeeccccceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence            999999888888999988888866543 3345666654

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.6e-31  Score=222.03  Aligned_cols=242  Identities=21%  Similarity=0.256  Sum_probs=206.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|++++++++||+|+.                               .|+++||+.++.+.++++ |++++
T Consensus        60 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~l-p~~~~  138 (333)
T cd08296          60 HEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARI-PDDLD  138 (333)
T ss_pred             cceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeC-CCCCC
Confidence            4688999999999999999999975                               278999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. .++.+++++.+||+++... .+.++++|+|+| +|++|++++++|+.+|++|+++++++++.+.++ ++|+++++++
T Consensus       139 ~~-~aa~l~~~~~ta~~~~~~~-~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~  214 (333)
T cd08296         139 AA-EAAPLLCAGVTTFNALRNS-GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR-KLGAHHYIDT  214 (333)
T ss_pred             HH-HhhhhhhhhHHHHHHHHhc-CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcCCcEEecC
Confidence            43 3778899999999999655 899999999999 699999999999999999999999999999998 8999889988


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCC-hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      .+. ++...+.+.  +++|+++|+.| +..+..++++++++|+++.+|...      ....++...++.+++++.++...
T Consensus       215 ~~~-~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~------~~~~~~~~~~~~~~~~i~~~~~~  285 (333)
T cd08296         215 SKE-DVAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAG------EPVAVSPLQLIMGRKSIHGWPSG  285 (333)
T ss_pred             CCc-cHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCC------CCCCcCHHHHhhcccEEEEeCcC
Confidence            876 676666655  36999999997 478899999999999999998743      11234455667899999997754


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .     ...++.+.+++.++.+++.+ ..++++++++||+.+.+++.+||+|++
T Consensus       286 ~-----~~~~~~~~~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         286 T-----ALDSEDTLKFSALHGVRPMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             C-----HHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            3     56688888999999998775 479999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.9e-31  Score=223.16  Aligned_cols=245  Identities=22%  Similarity=0.268  Sum_probs=204.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------cccceeEeecCCcceeecCCCCCchhhhhhcc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILG   61 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~   61 (268)
                      .|++|+|+++|+++++|++||+|++.                      |+|++|+.++.+.++++ |++++.. ++++++
T Consensus        83 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~~a~l~  160 (350)
T cd08274          83 ADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPV-NSPLSDV-ELATFP  160 (350)
T ss_pred             CcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeC-CCCCCHH-HHHhcc
Confidence            46789999999999999999999872                      78999999999999999 8885544 377899


Q ss_pred             chHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHH
Q 024411           62 MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA  141 (268)
Q Consensus        62 ~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  141 (268)
                      +++.+||+++ ...++++++++||+|++|++|++++++++.+|++|+++++++ +.+.++ ++|++.+++.... .... 
T Consensus       161 ~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~-~~g~~~~~~~~~~-~~~~-  235 (350)
T cd08274         161 CSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR-ALGADTVILRDAP-LLAD-  235 (350)
T ss_pred             cHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH-hcCCeEEEeCCCc-cHHH-
Confidence            9999999998 667899999999999999999999999999999999998665 788887 8998765555443 3333 


Q ss_pred             HHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHH
Q 024411          142 LKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF  220 (268)
Q Consensus       142 ~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (268)
                       ...+.+ ++|+++|++|+..+..++++++++|+++.+|....     .....+...++.+++++.++....     .+.
T Consensus       236 -~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  304 (350)
T cd08274         236 -AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAG-----PVVELDLRTLYLKDLTLFGSTLGT-----REV  304 (350)
T ss_pred             -HHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCC-----ccccCCHHHhhhcceEEEEeecCC-----HHH
Confidence             344444 89999999999889999999999999999986321     112344556678888988877643     677


Q ss_pred             HHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          221 LEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       221 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++++.+++.++.+++.+..+++++++++|++.+.++...+|+++++
T Consensus       305 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         305 FRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             HHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            8999999999999887778899999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=2.9e-31  Score=220.18  Aligned_cols=256  Identities=51%  Similarity=0.841  Sum_probs=210.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecC-CcceeecCCCCC--chhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHLFKIQHTDVP--LSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~-~~~~~~~p~~~~--~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|+++|++  .+++||+|+++++|++|+.++. +.++++ |++++  ....++++++++.+||+++.....+.++
T Consensus        70 ~e~~G~V~~~G~~--~~~~Gd~V~~~~~~~~~~~v~~~~~~~~l-P~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~  146 (329)
T cd05288          70 GGGVGEVVESRSP--DFKVGDLVSGFLGWQEYAVVDGASGLRKL-DPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPG  146 (329)
T ss_pred             CceEEEEEecCCC--CCCCCCEEecccceEEEEEecchhhcEEC-CcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCC
Confidence            4778999999964  7999999999999999999999 999999 88853  2222344899999999999887889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh-cCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK-FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++|+|+|++|++|++++|+++..|++|+++++++++.+.++ + +|+++++++++. ++...+.+.+++++|+++||+|+
T Consensus       147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~v~~~~~~~~d~vi~~~g~  224 (329)
T cd05288         147 ETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV-EELGFDAAINYKTP-DLAEALKEAAPDGIDVYFDNVGG  224 (329)
T ss_pred             CEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hhcCCceEEecCCh-hHHHHHHHhccCCceEEEEcchH
Confidence            99999999999999999999999999999999999999988 5 999888888876 77777777765589999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeeh
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM  239 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  239 (268)
                      ..+..++++++++|+++.+|..............+....+.+++++.++..........+.+.++.+++.++.+++....
T Consensus       225 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  304 (329)
T cd05288         225 EILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDV  304 (329)
T ss_pred             HHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccc
Confidence            88999999999999999998644221100000233456677888888876654333335678889999999999877667


Q ss_pred             hcccccHHHHHHHHHcCCccceEEE
Q 024411          240 AEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       240 ~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      .+++++++++++.+.+++..+|+++
T Consensus       305 ~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         305 VEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             cccHHHHHHHHHHHhcCCCccceeC
Confidence            7899999999999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=3.4e-31  Score=219.20  Aligned_cols=253  Identities=22%  Similarity=0.297  Sum_probs=214.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|..+|++++.+++||+|+++   |+|++|++++.+.++++ |++++.. +++.+++...+||+++...+.+.++
T Consensus        62 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~l-p~~~~~~-~~a~~~~~~~ta~~~~~~~~~~~~~  139 (323)
T cd05282          62 NEGVGVVVEVGSGVSGLLVGQRVLPLGGEGTWQEYVVAPADDLIPV-PDSISDE-QAAMLYINPLTAWLMLTEYLKLPPG  139 (323)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEEeCCCCcceeEEecCHHHeEEC-CCCCCHH-HHHHHhccHHHHHHHHHHhccCCCC
Confidence            46789999999999999999999995   79999999999999999 8885443 3777888999999999888888999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++++|+|++|.+|++++++|+.+|++++++++++++.+.++ ++|+++++++... ++...+.+.+++ ++|+++||+|+
T Consensus       140 ~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vl~~~g~  217 (323)
T cd05282         140 DWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK-ALGADEVIDSSPE-DLAQRVKEATGGAGARLALDAVGG  217 (323)
T ss_pred             CEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH-hcCCCEEecccch-hHHHHHHHHhcCCCceEEEECCCC
Confidence            99999999999999999999999999999999999999997 8999888888775 777888888776 89999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-----cchHHHHHHHHHHHHcCCce
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-----HLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~l~  234 (268)
                      ......+++++++|+++.+|.....     ....+...+..+++++.++....+.     ....+.++++.+++.++.+.
T Consensus       218 ~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  292 (323)
T cd05282         218 ESATRLARSLRPGGTLVNYGLLSGE-----PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLT  292 (323)
T ss_pred             HHHHHHHHhhCCCCEEEEEccCCCC-----CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcc
Confidence            7778889999999999999874321     1123333444488998888765532     23446788899999999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+...++++++++|++.+.+++..+|++++
T Consensus       293 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         293 TPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             cCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            7777889999999999999998888899863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-31  Score=218.90  Aligned_cols=256  Identities=23%  Similarity=0.356  Sum_probs=212.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|.++|++++.+++||+|+++   |+|++|++++.+.++++ |++++.. +++.+++++.+||+++...+.+.++
T Consensus        64 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~a~~~~~~~~ta~~~l~~~~~~~~~  141 (334)
T PTZ00354         64 LEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHI-PQGYTFE-EAAAIPEAFLTAWQLLKKHGDVKKG  141 (334)
T ss_pred             eeeEEEEEEeCCCCCCCCCCCEEEEecCCCceeeEEEecHHHcEeC-CCCCCHH-HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999997   79999999999999999 8885443 3778899999999999887889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhh-HHHHHHHHCCC-CccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD-LNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      ++++|+|++|++|++++++|+..|++++++++++++.+.++ ++|.+.+++.... + +...++..+++ ++|+++|+.+
T Consensus       142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~  219 (334)
T PTZ00354        142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KLAAIILIRYPDE-EGFAPKVKKLTGEKGVNLVLDCVG  219 (334)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCCh-hHHHHHHHHHhCCCCceEEEECCc
Confidence            99999999999999999999999999888998999999998 8999888887664 4 77788887766 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-----cchHHHHHHHHHHHHcCCc
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-----HLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~l  233 (268)
                      +..+..++++++++|+++.++...+...    ...+...++.++.++.+.......     ....+.++++.+++.++.+
T Consensus       220 ~~~~~~~~~~l~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  295 (334)
T PTZ00354        220 GSYLSETAEVLAVDGKWIVYGFMGGAKV----EKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEI  295 (334)
T ss_pred             hHHHHHHHHHhccCCeEEEEecCCCCcc----cccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCc
Confidence            8888999999999999999986432111    113445556676677776544321     1222456778899999999


Q ss_pred             eeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      .+.+...+++++++++++.+.+++..+|+|+++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~  329 (334)
T PTZ00354        296 KPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN  329 (334)
T ss_pred             cCccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            8877788999999999999998888899999875

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=2.9e-31  Score=221.21  Aligned_cols=255  Identities=25%  Similarity=0.282  Sum_probs=210.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .+++|+|.++|+++..|++||+|++.    |+|++|+.++.+.++++ |++++.. +++.+++++.+||+++.....+++
T Consensus        69 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~l-p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~  146 (341)
T cd08290          69 NEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKV-PNDVDPE-QAATLSVNPCTAYRLLEDFVKLQP  146 (341)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEecCCCCccchheEeccHHHeEeC-CCCCCHH-HHHHhhccHHHHHHHHHhhcccCC
Confidence            47899999999999999999999986    89999999999999999 8885443 377889999999999987788999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHhcCCCeeeecCCh--hhHHHHHHHHCCCCccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK----DKVDLLKNKFGFDEAFNYKEE--ADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~----~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~~~~~~~~d~v  153 (268)
                      +++|||+|++|++|++++|+|+..|++++++++++    ++.+.++ ++|++++++++..  .++...++...++++|++
T Consensus       147 g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~v  225 (341)
T cd08290         147 GDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLK-ALGADHVLTEEELRSLLATELLKSAPGGRPKLA  225 (341)
T ss_pred             CCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHH-hcCCCEEEeCcccccccHHHHHHHHcCCCceEE
Confidence            99999999999999999999999999999998776    6678887 8999988877641  035556666554479999


Q ss_pred             EeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-----cchHHHHHHHHHHH
Q 024411          154 FENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-----HLYPKFLEMIIPHI  228 (268)
Q Consensus       154 ~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  228 (268)
                      +||+|+..+...+++++++|+++.+|.....     ....+...++.+++++.+.....+.     ......++.+.+++
T Consensus       226 ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (341)
T cd08290         226 LNCVGGKSATELARLLSPGGTMVTYGGMSGQ-----PVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELI  300 (341)
T ss_pred             EECcCcHhHHHHHHHhCCCCEEEEEeccCCC-----CcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHH
Confidence            9999997788899999999999999863321     1223444567889999988765431     23334688889999


Q ss_pred             HcCCceeeeehhc---ccccHHHHHHHHHcCCccceEEEEe
Q 024411          229 KEGKLVYVEDMAE---GLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       229 ~~g~l~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++.+.+....++   ++++++++++.+.+++..+|+|+++
T Consensus       301 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         301 REGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             HcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            9999988766677   9999999999999988899999864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.1e-30  Score=217.67  Aligned_cols=247  Identities=22%  Similarity=0.257  Sum_probs=209.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .+++|+|+++|++++.+++||+|+.                               .|+|++|+.++.+.++++ |++++
T Consensus        62 ~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~l-p~~~~  140 (341)
T cd08297          62 HEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPI-PDGLS  140 (341)
T ss_pred             cccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEEC-CCCCC
Confidence            4789999999999999999999985                               378999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. +++.++..+.+||+++.. .++++++++||+|+++++|++++++|+.+|++|+++++++++.+.++ ++|.++++++
T Consensus       141 ~~-~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~  217 (341)
T cd08297         141 FE-QAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-ELGADAFVDF  217 (341)
T ss_pred             HH-HHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCcEEEcC
Confidence            44 377889999999999866 48999999999999888999999999999999999999999999997 8999888888


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      +.. ++...+.+.+++ ++|+++|+.+. ..+..++++++++|+++.+|....     .....+......+++++.+...
T Consensus       218 ~~~-~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~  291 (341)
T cd08297         218 KKS-DDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPG-----GFIPLDPFDLVLRGITIVGSLV  291 (341)
T ss_pred             CCc-cHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCC-----CCCCCCHHHHHhcccEEEEecc
Confidence            876 777888887766 89999997765 788899999999999999986431     1123344555678888877544


Q ss_pred             cccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ..     .+.++++++++.++.+++.+ ..+++++++++++.+.++...||+++++
T Consensus       292 ~~-----~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         292 GT-----RQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             CC-----HHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            33     57788999999999998755 5689999999999999999899999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=6.8e-31  Score=218.59  Aligned_cols=248  Identities=17%  Similarity=0.241  Sum_probs=201.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .+++|+|+++|++++.|++||+|+++      |+|++|++++.+.++++ |++++.. +++.+++++.+||+++....++
T Consensus        64 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~  141 (336)
T TIGR02817        64 WDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHK-PKSLSFA-EAAALPLTSITAWELLFDRLGI  141 (336)
T ss_pred             eeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcHHHcccC-CCCCCHH-HHhhhhHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999985      78999999999999999 8885544 4778999999999999888888


Q ss_pred             CC-----CcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 KH-----GECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~-----~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ++     +++|||+|++|++|++++|+|+.+ |++|+++++++++.+.++ ++|+++++++..  ++...+++..++++|
T Consensus       142 ~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~-~~g~~~~~~~~~--~~~~~i~~~~~~~vd  218 (336)
T TIGR02817       142 NDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL-ELGAHHVIDHSK--PLKAQLEKLGLEAVS  218 (336)
T ss_pred             CCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH-HcCCCEEEECCC--CHHHHHHHhcCCCCC
Confidence            77     999999999999999999999998 999999999999999998 899988888654  566777765434899


Q ss_pred             EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc--c---ccch--HHHHHH
Q 024411          152 IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD--H---YHLY--PKFLEM  223 (268)
Q Consensus       152 ~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~--~~~~~~  223 (268)
                      +++|++++ ......+++++++|+++.++...         ..+...+..+++++.+.....  .   ....  ...+++
T Consensus       219 ~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (336)
T TIGR02817       219 YVFSLTHTDQHFKEIVELLAPQGRFALIDDPA---------ELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNR  289 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHhccCCEEEEEcccc---------cccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHH
Confidence            99999865 78899999999999999874311         122233344556666544321  1   1111  256888


Q ss_pred             HHHHHHcCCceeeeehhcc---cccHHHHHHHHHcCCccceEEEE
Q 024411          224 IIPHIKEGKLVYVEDMAEG---LESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       224 ~~~~~~~g~l~~~~~~~~~---~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+++.++.+++.+.+.++   ++++++|++.+.+++..||+++.
T Consensus       290 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       290 VARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             HHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            9999999999887666664   68999999999999888999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=1e-30  Score=221.86  Aligned_cols=251  Identities=19%  Similarity=0.244  Sum_probs=207.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|++++.+++||+|+..                               |+|+||++++.+.++++ |++++
T Consensus        83 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~v-P~~l~  161 (398)
T TIGR01751        83 SDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPK-PKHLT  161 (398)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEEC-CCCCC
Confidence            45789999999999999999999763                               78999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhh--hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYE--VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF  130 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~--~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~  130 (268)
                      .. +++.+...+.+||+++..  .+++.++++++|+|++|++|++++++++.+|++++++++++++.+.++ ++|++.++
T Consensus       162 ~~-~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~-~~g~~~~v  239 (398)
T TIGR01751       162 WE-EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCR-ELGAEAVI  239 (398)
T ss_pred             HH-HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCCEEe
Confidence            44 367788899999999865  467899999999999999999999999999999999988999999998 79998888


Q ss_pred             ecCCh---------------------hhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCC
Q 024411          131 NYKEE---------------------ADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDK  188 (268)
Q Consensus       131 ~~~~~---------------------~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  188 (268)
                      |++..                     ..+...+.+.+++ ++|++|||+|...+..++++++++|+++.+|......   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~---  316 (398)
T TIGR01751       240 DRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYN---  316 (398)
T ss_pred             cCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCC---
Confidence            76431                     0245566677766 8999999999988899999999999999998754211   


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                        ...+...++.++.++.+.....     .+.++++.+++.++.+.+.+..++++++++++++.+.+++..||+|+.+.
T Consensus       317 --~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       317 --HDYDNRYLWMRQKRIQGSHFAN-----LREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLVL  388 (398)
T ss_pred             --CCcCHHHHhhcccEEEccccCc-----HHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence              1223445556666666655433     34467888999999998888888999999999999999999999999763

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=2.6e-31  Score=222.47  Aligned_cols=240  Identities=20%  Similarity=0.187  Sum_probs=187.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------cccceeEeecCCcceeecCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------TGWEEYSLITAPHLFKIQHTD   50 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------g~~~~~~~v~~~~~~~~~p~~   50 (268)
                      .|++|+|+++|++ ++|++||+|++.                                 |+|+||++++++.++++ |++
T Consensus        63 ~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~-P~~  140 (355)
T cd08230          63 HEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKV-PPS  140 (355)
T ss_pred             cccceEEEEecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEEC-CCC
Confidence            5789999999999 999999999752                                 67999999999999999 888


Q ss_pred             CCchhhhhhccchHHHHHHHhhhh------cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHH
Q 024411           51 VPLSYYTGILGMPGMTAYVGFYEV------CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLK  121 (268)
Q Consensus        51 ~~~~~~~a~l~~~~~~a~~~l~~~------~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~  121 (268)
                      +  + +++++..+..++++++...      ..++++++|+|+|+ |++|++++|+|+.+|++|+++++   ++++.+.++
T Consensus       141 ~--~-~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~  216 (355)
T cd08230         141 L--A-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE  216 (355)
T ss_pred             C--C-cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence            4  4 4566667777666655332      22568999999996 99999999999999999999987   678999998


Q ss_pred             HhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccc----hH
Q 024411          122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN----LM  196 (268)
Q Consensus       122 ~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~----~~  196 (268)
                       ++|++. +++.++ ++.+ .+  ..+++|++|||+|. ..+..+++.++++|+++.+|...+.    .....+    ..
T Consensus       217 -~~Ga~~-v~~~~~-~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~----~~~~~~~~~~~~  286 (355)
T cd08230         217 -ELGATY-VNSSKT-PVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGG----REFEVDGGELNR  286 (355)
T ss_pred             -HcCCEE-ecCCcc-chhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCC----CccccChhhhhh
Confidence             999986 455554 4433 21  12479999999997 6789999999999999999875431    011122    34


Q ss_pred             HHHhcceeeeeEEecccccchHHHHHHHHHHHHcCC------ceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          197 YLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK------LVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++.+++++.|+...+     .+.++++++++.++.      +++.++++|+++++++||+.+.++.  .|++++|
T Consensus       287 ~~~~k~~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         287 DLVLGNKALVGSVNAN-----KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             hHhhcCcEEEEecCCc-----hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence            5677999999876544     445777888887765      6667888999999999999987654  5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=2.7e-31  Score=220.91  Aligned_cols=234  Identities=16%  Similarity=0.154  Sum_probs=180.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------cccceeEeecCCcceeecCCCCCchhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------TGWEEYSLITAPHLFKIQHTDVPLSYY   56 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~   56 (268)
                      -|++|+|+++|.+  .|++||||+..                           |+|+||++++++.++++ |++  ++++
T Consensus        64 hE~~G~V~~~g~~--~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v-P~~--l~~~  138 (341)
T cd08237          64 HEGIGVVVSDPTG--TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKL-PDN--VDPE  138 (341)
T ss_pred             ceeEEEEEeeCCC--ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEEC-CCC--CChH
Confidence            4678888887764  79999999752                           77999999999999999 888  4445


Q ss_pred             hhhccchHHHHHHHhhhh--cCCCCCcEEEEecCcchHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           57 TGILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKL-LG-CYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        57 ~a~l~~~~~~a~~~l~~~--~~~~~~~~vlI~ga~g~~G~~~i~l~~~-~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .|++..+.+++++++...  ..++++++|+|+|+ |++|++++|+++. .| .+|+++++++++.+.++ +.+.+..++ 
T Consensus       139 ~aa~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~-~~~~~~~~~-  215 (341)
T cd08237         139 VAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS-FADETYLID-  215 (341)
T ss_pred             HhhhhchHHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh-hcCceeehh-
Confidence            566778999999998643  34688999999997 9999999999986 55 58999999999999988 655543221 


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh----hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeee
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG----KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG  207 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (268)
                          ++.       .+ ++|++||++|+    ..+..++++++++|+++.+|...+      ...++...++.+++++.+
T Consensus       216 ----~~~-------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g  278 (341)
T cd08237         216 ----DIP-------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEY------PVPINTRMVLEKGLTLVG  278 (341)
T ss_pred             ----hhh-------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCC------CcccCHHHHhhCceEEEE
Confidence                111       12 69999999994    468899999999999999986421      123445667889999998


Q ss_pred             EEecccccchHHHHHHHHHHHHcC-----CceeeeehhcccccHHHHHHHHHcCC--ccceEEEEec
Q 024411          208 FIVLDHYHLYPKFLEMIIPHIKEG-----KLVYVEDMAEGLESAPAALIGLFSGQ--NVGKQVVAVA  267 (268)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g-----~l~~~~~~~~~~~~~~~a~~~~~~~~--~~gkvvi~~~  267 (268)
                      +...+     .+.++++++++.++     .+++.++++|++++++++.+.+++..  ..||+|++++
T Consensus       279 ~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~  340 (341)
T cd08237         279 SSRST-----REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE  340 (341)
T ss_pred             ecccC-----HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence            76543     45688899999998     57778888999865555555444322  6799999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=9.2e-31  Score=217.21  Aligned_cols=248  Identities=24%  Similarity=0.248  Sum_probs=200.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----------------------------------cccceeEeecCCcceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----------------------------------TGWEEYSLITAPHLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----------------------------------g~~~~~~~v~~~~~~~~~p   48 (268)
                      =|++|+|.++| .++.+++||||...                                   |+|+||+++|.+.++.+.|
T Consensus        61 HE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~p  139 (350)
T COG1063          61 HEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLP  139 (350)
T ss_pred             ccceEEEEEec-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCC
Confidence            36799999999 77889999999521                                   6899999999877666547


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh-cCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNK-FGF  126 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~-~g~  126 (268)
                      +++  +.+++++..++.+++++........++.+++|+|+ |++|++++++++.+|+ +|++++.++++++.++ + .++
T Consensus       140 d~~--~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~-~~~g~  215 (350)
T COG1063         140 DGI--DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAK-EAGGA  215 (350)
T ss_pred             CCC--ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HhCCC
Confidence            763  54689999999999777544555566669999997 9999999999999998 8888899999999999 6 666


Q ss_pred             CeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          127 DEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      +.+++...+ +....+.+.+.+ ++|++|||+|. ..+.++++.++++|+++.+|...+..     ...+...++.++++
T Consensus       216 ~~~~~~~~~-~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~-----~~~~~~~~~~kel~  289 (350)
T COG1063         216 DVVVNPSED-DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGED-----IPLPAGLVVSKELT  289 (350)
T ss_pred             eEeecCccc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCcc-----CccCHHHHHhcccE
Confidence            666665554 566777788888 99999999998 67899999999999999999854321     14556788899999


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCc-cceEEEEe
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQN-VGKQVVAV  266 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  266 (268)
                      +.|+....    ....++.+++++++|++.+  .+++.++++++++|++.+.++.. ..|+++.+
T Consensus       290 l~gs~~~~----~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         290 LRGSLRPS----GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             EEeccCCC----CcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99984311    1456889999999999976  45667789999999999998554 55888764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=2.6e-31  Score=218.01  Aligned_cols=229  Identities=16%  Similarity=0.179  Sum_probs=178.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------ccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------MTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGF   71 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l   71 (268)
                      -|++|+|+++|+++ +|++||||+.            .|+|+||++++++.++++ |++++  .+++. ..+..+||+++
T Consensus        64 hE~~G~V~~vG~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~i-p~~~~--~~~a~-~~~~~~a~~~~  138 (308)
T TIGR01202        64 YESVGRVVEAGPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRL-DPALG--PQGAL-LALAATARHAV  138 (308)
T ss_pred             ceeEEEEEEecCCC-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeC-CCCCC--HHHHh-hhHHHHHHHHH
Confidence            46799999999998 5999999985            489999999999999999 88744  33443 34578999999


Q ss_pred             hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           72 YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        72 ~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+ . ..++++++|+|+ |++|++++|+|+.+|++ |+++...+++.+.+. ..   .++|+.+  .        .++++
T Consensus       139 ~~-~-~~~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~-~~---~~i~~~~--~--------~~~g~  201 (308)
T TIGR01202       139 AG-A-EVKVLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT-GY---EVLDPEK--D--------PRRDY  201 (308)
T ss_pred             Hh-c-ccCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh-hc---cccChhh--c--------cCCCC
Confidence            55 2 346889999986 99999999999999997 555566666666554 32   3454432  1        12379


Q ss_pred             cEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHH
Q 024411          151 DIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIK  229 (268)
Q Consensus       151 d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (268)
                      |++|||+|+ ..+..++++++++|+++.+|...+      ....++..++.+++++.++..+.     .+.++++++++.
T Consensus       202 Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~  270 (308)
T TIGR01202       202 RAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE------PVNFDFVPAFMKEARLRIAAEWQ-----PGDLHAVRELIE  270 (308)
T ss_pred             CEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC------CcccccchhhhcceEEEEecccc-----hhHHHHHHHHHH
Confidence            999999998 578999999999999999987431      12234456677888888765543     567999999999


Q ss_pred             cCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          230 EGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       230 ~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +|++++  .+++.|+|+++++|++.+.++...+|++++
T Consensus       271 ~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       271 SGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             cCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            999976  577899999999999998877677899873

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=9.7e-31  Score=220.63  Aligned_cols=252  Identities=18%  Similarity=0.185  Sum_probs=191.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe----------------------------------------ccccceeEeecCC--
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG----------------------------------------MTGWEEYSLITAP--   41 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~----------------------------------------~g~~~~~~~v~~~--   41 (268)
                      -|++|+|+++|++|++|++||||..                                        .|+|+||++++..  
T Consensus        67 hE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~  146 (393)
T TIGR02819        67 HEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADF  146 (393)
T ss_pred             ceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhC
Confidence            4679999999999999999999954                                        1788999999974  


Q ss_pred             cceeecCCCCCch---hhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEE-EeCCHHHH
Q 024411           42 HLFKIQHTDVPLS---YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVG-SAGSKDKV  117 (268)
Q Consensus        42 ~~~~~~p~~~~~~---~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~-~~~~~~~~  117 (268)
                      .++++ |++++..   ..++++.+++.++|+++. ..+++++++|+|.|+ |++|++++|+|+.+|+++++ +++++++.
T Consensus       147 ~l~~v-P~~~~~~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       147 NLLKF-PDRDQALEKIRDLTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             ceEEC-CCcccccccccceeeeccHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence            59999 7764321   125678889999999985 478999999999765 99999999999999997554 55678899


Q ss_pred             HHHHHhcCCCeeeecC-ChhhHHHHHHHHCCC-CccEEEeCCChh---------------hHHhHHHhhhcCCEEEEEcc
Q 024411          118 DLLKNKFGFDEAFNYK-EEADLNAALKRYFPE-GIDIYFENVGGK---------------LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       118 ~~~~~~~g~~~v~~~~-~~~~~~~~~~~~~~~-~~d~v~d~~g~~---------------~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++ ++|++. +++. .. ++.+.+.+.+++ ++|+++|++|.+               .+.++++.++++|+++.+|.
T Consensus       224 ~~a~-~~Ga~~-v~~~~~~-~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       224 AQAR-SFGCET-VDLSKDA-TLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             HHHH-HcCCeE-EecCCcc-cHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            9999 899964 5443 33 677778887776 899999999974               78999999999999999998


Q ss_pred             ccc-ccCCC------CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eee-hhcccccHHHHH
Q 024411          181 ISQ-YNLDK------PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VED-MAEGLESAPAAL  250 (268)
Q Consensus       181 ~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~-~~~~~~~~~~a~  250 (268)
                      ... .....      ....+.......+++++.+...     ...++..++++++.+|++.+  .++ ++|+|+++++||
T Consensus       301 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~-----~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~  375 (393)
T TIGR02819       301 YVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQT-----PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGY  375 (393)
T ss_pred             cCCcccccccccccccccccchHHhhccCceEEeccC-----ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHH
Confidence            531 11000      0112223344455566655221     11344567899999999864  455 689999999999


Q ss_pred             HHHHcCCccceEEEEec
Q 024411          251 IGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       251 ~~~~~~~~~gkvvi~~~  267 (268)
                      +.+.++. .+|+++.++
T Consensus       376 ~~~~~~~-~~Kvvi~~~  391 (393)
T TIGR02819       376 AEFDAGA-AKKFVIDPH  391 (393)
T ss_pred             HHHhhCC-ceEEEEeCC
Confidence            9998875 489999864

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=2e-30  Score=216.10  Aligned_cols=244  Identities=22%  Similarity=0.262  Sum_probs=204.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|.++|+++..+++||+|+++                              |+|++|++++.+.++++ |++++.
T Consensus        63 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-P~~ls~  141 (340)
T cd05284          63 HENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKL-PRGLDP  141 (340)
T ss_pred             cceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEEC-CCCCCH
Confidence            46789999999999999999999863                              68999999999999999 888544


Q ss_pred             hhhhhhccchHHHHHHHhhhh-cCCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           54 SYYTGILGMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~-~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      . +++.++..+.+||+++... ..+.++++|||+|+ |++|++++++|+..| .+|+++++++++.+.++ ++|++++++
T Consensus       142 ~-~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~  218 (340)
T cd05284         142 V-EAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEEALKLAE-RLGADHVLN  218 (340)
T ss_pred             H-HhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH-HhCCcEEEc
Confidence            3 3778999999999999776 46889999999995 779999999999999 79999999999999997 899988888


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      ++.  .+...+++.+++ ++|+++|++|+ ..+..++++++++|+++.+|....       ...+....+.+++++.+..
T Consensus       219 ~~~--~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-------~~~~~~~~~~~~~~~~~~~  289 (340)
T cd05284         219 ASD--DVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-------GRLPTSDLVPTEISVIGSL  289 (340)
T ss_pred             CCc--cHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-------CccCHHHhhhcceEEEEEe
Confidence            775  366777777766 89999999996 788999999999999999986431       1122334457888888766


Q ss_pred             ecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ...     .+.++.+++++.++.+++.+ ..|+++++++|++.+++++..||+++.+
T Consensus       290 ~~~-----~~~~~~~~~~l~~g~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         290 WGT-----RAELVEVVALAESGKVKVEI-TKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             ccc-----HHHHHHHHHHHHhCCCCcce-EEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            433     56788899999999988644 5789999999999999998889999763

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.1e-30  Score=217.98  Aligned_cols=249  Identities=23%  Similarity=0.290  Sum_probs=208.2

Q ss_pred             CccceEEEEecCCCCC---CCCCCeEEe----------------------------------------------------
Q 024411            4 ISGYGVAKVLDSENPE---FNKGDLVWG----------------------------------------------------   28 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~---~~~Gd~V~~----------------------------------------------------   28 (268)
                      .|++|+|+.+|+++++   |++||+|++                                                    
T Consensus        59 ~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (367)
T cd08263          59 HEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYS  138 (367)
T ss_pred             cccceEEEEeCCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcccccc
Confidence            4789999999999988   999999987                                                    


Q ss_pred             ccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-E
Q 024411           29 MTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-V  107 (268)
Q Consensus        29 ~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V  107 (268)
                      .|+|++|+.++.+.++++ |++++.. ++++++.++++||+++...+.+.++++++|+| +|++|++++++|+..|++ |
T Consensus       139 ~g~~~~~~~~~~~~~~~~-P~~is~~-~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~v  215 (367)
T cd08263         139 MGGLAEYAVVPATALAPL-PESLDYT-ESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPI  215 (367)
T ss_pred             CCcceeEEEechhhEEEC-CCCCCHH-HHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeE
Confidence            278999999999999999 9985544 47889999999999998888889999999996 599999999999999997 8


Q ss_pred             EEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChh-hHHhHHHhhhcCCEEEEEccccccc
Q 024411          108 VGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYN  185 (268)
Q Consensus       108 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~  185 (268)
                      ++++.++++.+.++ ++|++.+++++.. ++...++...++ ++|+++|++++. ....++++++++|+++.++..... 
T Consensus       216 i~~~~s~~~~~~~~-~~g~~~v~~~~~~-~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~-  292 (367)
T cd08263         216 IAVDVRDEKLAKAK-ELGATHTVNAAKE-DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGG-  292 (367)
T ss_pred             EEEeCCHHHHHHHH-HhCCceEecCCcc-cHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCC-
Confidence            88888999999887 8999889988876 777788877766 899999999986 889999999999999999764311 


Q ss_pred             CCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceee--eehhcccccHHHHHHHHHcCCccceEE
Q 024411          186 LDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLESAPAALIGLFSGQNVGKQV  263 (268)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvv  263 (268)
                         .....+...++.+++++.++....    ..+.++++.+++.++.+++.  +...+++++++++++.+++++..||+|
T Consensus       293 ---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~  365 (367)
T cd08263         293 ---ATAEIPITRLVRRGIKIIGSYGAR----PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAI  365 (367)
T ss_pred             ---CccccCHHHHhhCCeEEEecCCCC----cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceee
Confidence               112233444456888877743221    14678889999999999864  567899999999999999998889998


Q ss_pred             EE
Q 024411          264 VA  265 (268)
Q Consensus       264 i~  265 (268)
                      ++
T Consensus       366 ~~  367 (367)
T cd08263         366 VE  367 (367)
T ss_pred             eC
Confidence            74

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=8.4e-31  Score=212.32  Aligned_cols=226  Identities=18%  Similarity=0.210  Sum_probs=182.6

Q ss_pred             CccceEEEEecCCCC------CCCCCCeEEe-------------------------------------ccccceeEeecC
Q 024411            4 ISGYGVAKVLDSENP------EFNKGDLVWG-------------------------------------MTGWEEYSLITA   40 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~------~~~~Gd~V~~-------------------------------------~g~~~~~~~v~~   40 (268)
                      -|++|+|+++|++|+      ++++||||..                                     .|+|+||+++++
T Consensus         4 HE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~   83 (280)
T TIGR03366         4 HEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPA   83 (280)
T ss_pred             cccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEecC
Confidence            478999999999999      8999999953                                     167999999999


Q ss_pred             C-cceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Q 024411           41 P-HLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVD  118 (268)
Q Consensus        41 ~-~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~  118 (268)
                      + .++++ |++++.. .++.+++.+.|||+++... ...++++|+|+|+ |++|++++|+|+.+|++ |+++++++++.+
T Consensus        84 ~~~~~~l-P~~~~~~-~aa~l~~~~~ta~~al~~~-~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366        84 GTAIVPV-PDDLPDA-VAAPAGCATATVMAALEAA-GDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCcEEEC-CCCCCHH-HhhHhhhHHHHHHHHHHhc-cCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            8 69999 8885544 3777888899999998554 5669999999987 99999999999999996 888888999999


Q ss_pred             HHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchH
Q 024411          119 LLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLM  196 (268)
Q Consensus       119 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  196 (268)
                      .++ ++|++.+++...   ..+.+++.+.+ ++|+++|++|. ..+..++++++++|+++.+|...+    ......+..
T Consensus       160 ~a~-~~Ga~~~i~~~~---~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~----~~~~~i~~~  231 (280)
T TIGR03366       160 LAL-SFGATALAEPEV---LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFP----GGPVALDPE  231 (280)
T ss_pred             HHH-HcCCcEecCchh---hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCC----CCceeeCHH
Confidence            998 999988887643   34456666665 89999999997 678999999999999999986431    111234567


Q ss_pred             HHHhcceeeeeEEecccccchHHHHHHHHHHHHcC--Cc--eeeeehhcccccH
Q 024411          197 YLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEG--KL--VYVEDMAEGLESA  246 (268)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~l--~~~~~~~~~~~~~  246 (268)
                      .++.+++++.|+..+.     .+.++++++++.++  ++  ++.++++|+++++
T Consensus       232 ~~~~~~~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       232 QVVRRWLTIRGVHNYE-----PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             HHHhCCcEEEecCCCC-----HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            7888999999876544     56788999999874  33  3567778888763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=5.3e-30  Score=213.97  Aligned_cols=249  Identities=22%  Similarity=0.272  Sum_probs=207.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCC--cceeecCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAP--HLFKIQHTDV   51 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~--~~~~~~p~~~   51 (268)
                      .+++|+|+.+|++++.+++||+|++                              .|+|++|++++.+  .++++ |+++
T Consensus        60 ~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~i-P~~~  138 (345)
T cd08260          60 HEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRL-PDDV  138 (345)
T ss_pred             cceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEEC-CCCC
Confidence            5789999999999999999999986                              3789999999985  79999 9885


Q ss_pred             CchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           52 PLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        52 ~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      +.. +++.++.++++||+++...+++.++++++|+| .|++|++++++|+..|++|+++++++++.+.++ ++|++++++
T Consensus       139 ~~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~  215 (345)
T cd08260         139 DFV-TAAGLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELAR-ELGAVATVN  215 (345)
T ss_pred             CHH-HhhhhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HhCCCEEEc
Confidence            544 37788889999999997788899999999999 599999999999999999999999999999998 899988988


Q ss_pred             cCC-hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKE-EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~-~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      ++. . ++...+....++++|+++||+|+ ..+...+++++++|+++.+|.......   ....++..++.+++++.+..
T Consensus       216 ~~~~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~  291 (345)
T cd08260         216 ASEVE-DVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEA---GVALPMDRVVARELEIVGSH  291 (345)
T ss_pred             cccch-hHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCC---ccccCHHHHhhcccEEEeCC
Confidence            876 5 77777777665589999999995 788899999999999999987432110   02233445557788888765


Q ss_pred             ecccccchHHHHHHHHHHHHcCCceee--eehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      ...     .+.++++.++++++.+.+.  +...++++++++|++.+.+++..+|+|++
T Consensus       292 ~~~-----~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         292 GMP-----AHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             cCC-----HHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            433     5678889999999998763  56788999999999999999989998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=6.3e-30  Score=212.83  Aligned_cols=244  Identities=18%  Similarity=0.212  Sum_probs=202.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|+++|++++.+++||+|++                              .|+|++|+.++++ ++++ |++++.
T Consensus        59 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~-p~~~~~  136 (337)
T cd08261          59 HELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLV-PEGLSL  136 (337)
T ss_pred             cccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEEC-CCCCCH
Confidence            5678999999999999999999986                              3789999999999 9999 998544


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . +++.+ ..++++++++ ...++.++++|||+| +|++|++++|+|+.+|++|+++.+++++.+.++ +++++++++++
T Consensus       137 ~-~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~-~~g~~~v~~~~  211 (337)
T cd08261         137 D-QAALV-EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVG  211 (337)
T ss_pred             H-Hhhhh-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH-HhCCCEEecCc
Confidence            3 24444 6778899888 678899999999997 589999999999999999999988999999997 89998999888


Q ss_pred             ChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          134 EEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      .. ++...+.+.+++ ++|+++||+|+ ..+..++++++++|+++.++....      ....+...+..+++++.+... 
T Consensus       212 ~~-~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~------~~~~~~~~~~~~~~~~~~~~~-  283 (337)
T cd08261         212 DE-DVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKG------PVTFPDPEFHKKELTILGSRN-  283 (337)
T ss_pred             cc-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCC------CCccCHHHHHhCCCEEEEecc-
Confidence            76 788888887776 89999999987 788899999999999999876431      112233445567777766531 


Q ss_pred             ccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcC-CccceEEEEe
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSG-QNVGKQVVAV  266 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~  266 (268)
                          ...+.++++.+++.++.+++  .+..++++++++++++.+.++ ...+|+|+++
T Consensus       284 ----~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         284 ----ATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             ----CChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence                23567888999999999987  677789999999999999988 4778999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=5.3e-30  Score=210.41  Aligned_cols=244  Identities=23%  Similarity=0.280  Sum_probs=201.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|+++|++++.|++||+|+++   |+|++|+.++.+.++++ |++++.. +++++++.+.+||+++...... ++
T Consensus        57 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~a~~~~~~~~ta~~~~~~~~~~-~~  133 (305)
T cd08270          57 WDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELVAVPTGWLAVL-PDGVSFA-QAATLPVAGVTALRALRRGGPL-LG  133 (305)
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEecCCcceeeEEEEchHHeEEC-CCCCCHH-HHHHhHhHHHHHHHHHHHhCCC-CC
Confidence            57899999999999999999999986   79999999999999999 8885554 4778999999999999776655 59


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      ++++|+|++|++|++++++++..|++|+.+++++++.+.++ ++|++.+++...  .       ..++++|+++|++|+.
T Consensus       134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~--~-------~~~~~~d~vl~~~g~~  203 (305)
T cd08270         134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR-ELGAAEVVVGGS--E-------LSGAPVDLVVDSVGGP  203 (305)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEeccc--c-------ccCCCceEEEECCCcH
Confidence            99999999999999999999999999999999999999998 799875553321  1       1223799999999998


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHh--cceeeeeEEecccccchHHHHHHHHHHHHcCCceeeee
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVS--KRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED  238 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  238 (268)
                      .+..++++++++|+++.+|....     .....+...+..  ++.++.++.... +....+.++.+.+++.++++++.+.
T Consensus       204 ~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~  277 (305)
T cd08270         204 QLARALELLAPGGTVVSVGSSSG-----EPAVFNPAAFVGGGGGRRLYTFFLYD-GEPLAADLARLLGLVAAGRLDPRIG  277 (305)
T ss_pred             HHHHHHHHhcCCCEEEEEeccCC-----CcccccHHHHhcccccceEEEEEccC-HHHHHHHHHHHHHHHHCCCccceec
Confidence            88999999999999999986431     112223333333  578888877653 2334567888999999999998777


Q ss_pred             hhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          239 MAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       239 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++++++++++|++.+.+++..||+++++
T Consensus       278 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         278 WRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             cEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            8899999999999999988889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.98  E-value=7.4e-30  Score=211.77  Aligned_cols=256  Identities=35%  Similarity=0.581  Sum_probs=210.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGE   81 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~   81 (268)
                      .+++|+|..+|++++.+++||+|++.  |+|++|+.++.+.++++ |++  .. +++.+++++.+||+++....++.+++
T Consensus        66 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~g~~~s~~~v~~~~~~~i-p~~--~~-~~a~l~~~~~ta~~~l~~~~~~~~~~  141 (329)
T cd08250          66 FEGVGEVVAVGEGVTDFKVGDAVATMSFGAFAEYQVVPARHAVPV-PEL--KP-EVLPLLVSGLTASIALEEVGEMKSGE  141 (329)
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEEecCcceeEEEEechHHeEEC-CCC--cc-hhhhcccHHHHHHHHHHHhcCCCCCC
Confidence            46799999999999999999999986  89999999999999999 876  33 47789999999999998888899999


Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +++|+|++|++|++++++++..|++|+++++++++.+.++ ++|++.+++.+.. ++...+....++++|+++|++|+..
T Consensus       142 ~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~~~~~~~~~vd~v~~~~g~~~  219 (329)
T cd08250         142 TVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK-SLGCDRPINYKTE-DLGEVLKKEYPKGVDVVYESVGGEM  219 (329)
T ss_pred             EEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH-HcCCceEEeCCCc-cHHHHHHHhcCCCCeEEEECCcHHH
Confidence            9999999999999999999999999999999999999997 8998888877765 6666676655458999999999988


Q ss_pred             HHhHHHhhhcCCEEEEEcccccccCCC-C---ccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeee
Q 024411          162 LDAVLPNMKIRGRIAACGMISQYNLDK-P---EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVE  237 (268)
Q Consensus       162 ~~~~~~~l~~~G~~v~~g~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~  237 (268)
                      +..++++++++|+++.+|......... .   .........+.+++++.++....+.....+.+.++.+++.++.+++.+
T Consensus       220 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  299 (329)
T cd08250         220 FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEV  299 (329)
T ss_pred             HHHHHHHhccCCeEEEEecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeE
Confidence            899999999999999998754211000 0   001112345678888888876543333466788899999999998743


Q ss_pred             --ehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          238 --DMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       238 --~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                        ...++++++++|++.+.+++..+|++++
T Consensus       300 ~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         300 DPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             CCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence              3458999999999999998888898874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.98  E-value=5.1e-30  Score=214.45  Aligned_cols=246  Identities=20%  Similarity=0.242  Sum_probs=204.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -+++|+|.++|++++.+++||+|+++                              |++++|+.++.+.++++ |++++.
T Consensus        72 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-p~~~s~  150 (350)
T cd08240          72 HEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVD-PGGLDP  150 (350)
T ss_pred             cceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeC-CCCCCH
Confidence            36789999999999999999999864                              78999999999999999 888554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      . .++.+.+.+.+||+++.....+.++++|+|+| +|++|++++|+|+..|+ +|+++++++++.+.+. ++|++.+++.
T Consensus       151 ~-~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~  227 (350)
T cd08240         151 A-LAATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAK-AAGADVVVNG  227 (350)
T ss_pred             H-HeehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCcEEecC
Confidence            4 36788899999999998877777899999996 59999999999999999 7999998999999997 8999888887


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      +.. .+...+.+..++++|+++|++|. ..+..++++|+++|+++.+|.....      ...+......+++++.+....
T Consensus       228 ~~~-~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~  300 (350)
T cd08240         228 SDP-DAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE------ATLPLPLLPLRALTIQGSYVG  300 (350)
T ss_pred             CCc-cHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC------CcccHHHHhhcCcEEEEcccC
Confidence            765 66667777655589999999985 7889999999999999999864321      112222334477777776654


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .     .+.+.++++++.++.+++.+...++++++++|++.+.+++..||++++
T Consensus       301 ~-----~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         301 S-----LEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             C-----HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            4     467888999999999987766789999999999999998888999885

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.98  E-value=1.2e-29  Score=210.25  Aligned_cols=253  Identities=22%  Similarity=0.217  Sum_probs=202.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .+++|+|..+|++++.+++||+|+.+    |+|++|+.++.+.++++ |++++.. .++.+++...+||+++...+.+++
T Consensus        63 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~l-p~~~~~~-~~~~~~~~~~ta~~~l~~~~~~~~  140 (327)
T PRK10754         63 TEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAIL-PDAISFE-QAAASFLKGLTVYYLLRKTYEIKP  140 (327)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEECCCCCcceeeEEEcCHHHceeC-CCCCCHH-HHHHHHHHHHHHHHHHHhhcCCCC
Confidence            46789999999999999999999864    89999999999999999 8885444 366778899999999988888999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++++|+|++|.+|++++++++..|++|+.+++++++.+.++ ++|++++++.... ++.+.+++.+++ ++|+++||+|
T Consensus       141 g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vl~~~~  218 (327)
T PRK10754        141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK-KAGAWQVINYREE-NIVERVKEITGGKKVRVVYDSVG  218 (327)
T ss_pred             CCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEEcCCCC-cHHHHHHHHcCCCCeEEEEECCc
Confidence            999999999999999999999999999999999999999997 8999888887775 788888888876 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee-eeeEEeccc---ccchHHHHHHHHHHHHcCCce
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR-MEGFIVLDH---YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      +..+...+++++++|+++.+|.....     ........+..++.. ........+   +....+.++++++++.+|.++
T Consensus       219 ~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  293 (327)
T PRK10754        219 KDTWEASLDCLQRRGLMVSFGNASGP-----VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIK  293 (327)
T ss_pred             HHHHHHHHHHhccCCEEEEEccCCCC-----CCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCee
Confidence            98888999999999999999874311     111122222112211 111111111   112344567789999999998


Q ss_pred             ee--eehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          235 YV--EDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       235 ~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.  ....|++++++++++.+.+++..+|+|+.
T Consensus       294 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        294 VDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             eecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            64  35789999999999999999999999985

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.98  E-value=1.1e-29  Score=214.60  Aligned_cols=248  Identities=22%  Similarity=0.237  Sum_probs=202.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------------------ccccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------------------MTGWE   33 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------------------~g~~~   33 (268)
                      .|++|+|+++|++++++++||+|+.                                                  .|+|+
T Consensus        60 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  139 (386)
T cd08283          60 HEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQA  139 (386)
T ss_pred             ccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeE
Confidence            5789999999999999999999975                                                  26889


Q ss_pred             eeEeecCC--cceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEE
Q 024411           34 EYSLITAP--HLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGS  110 (268)
Q Consensus        34 ~~~~v~~~--~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~  110 (268)
                      ||++++.+  .++++ |++++.. +++.++...++||+++ ...++.++++|+|+|+ |++|++++++|+..|+ +|+++
T Consensus       140 ~~~~v~~~~~~~~~l-p~~~~~~-~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~  215 (386)
T cd08283         140 EYVRVPFADVGPFKI-PDDLSDE-KALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAI  215 (386)
T ss_pred             EEEEcccccCeEEEC-CCCCCHH-HHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEE
Confidence            99999988  78999 8885443 3778899999999999 7788999999999975 9999999999999998 69999


Q ss_pred             eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChh----------------------hHHhHHH
Q 024411          111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGK----------------------LLDAVLP  167 (268)
Q Consensus       111 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~----------------------~~~~~~~  167 (268)
                      ++++++.+.++ +++...++++...+++.+.+++.+.+ ++|+++|++|++                      .+..+++
T Consensus       216 ~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (386)
T cd08283         216 DRVPERLEMAR-SHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQ  294 (386)
T ss_pred             cCCHHHHHHHH-HcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHH
Confidence            99999999998 67444677776541377788887776 899999999752                      5788999


Q ss_pred             hhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceee--eehhccccc
Q 024411          168 NMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLES  245 (268)
Q Consensus       168 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~  245 (268)
                      +++++|+++.+|.....     ....+....+.+++++.+....     ..+.++.+.+++.++++.+.  +...+++++
T Consensus       295 ~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~  364 (386)
T cd08283         295 AVRKGGTVSIIGVYGGT-----VNKFPIGAAMNKGLTLRMGQTH-----VQRYLPRLLELIESGELDPSFIITHRLPLED  364 (386)
T ss_pred             HhccCCEEEEEcCCCCC-----cCccCHHHHHhCCcEEEeccCC-----chHHHHHHHHHHHcCCCChhHceEEEecHHH
Confidence            99999999999864321     1223344567888888886532     25678889999999999863  557889999


Q ss_pred             HHHHHHHHHcCC-ccceEEEEe
Q 024411          246 APAALIGLFSGQ-NVGKQVVAV  266 (268)
Q Consensus       246 ~~~a~~~~~~~~-~~gkvvi~~  266 (268)
                      +++|++.+.++. ..+|+++++
T Consensus       365 ~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         365 APEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             HHHHHHHHHhCCCCeEEEEecC
Confidence            999999998876 568999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.97  E-value=1.1e-29  Score=212.38  Aligned_cols=249  Identities=19%  Similarity=0.214  Sum_probs=198.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------------ccccceeEeecCC--cceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------------MTGWEEYSLITAP--HLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------~g~~~~~~~v~~~--~~~~~~p   48 (268)
                      .|++|+|+++|++++++++||+|++                                 .|+|+||++++.+  .++++ |
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~l-P  137 (351)
T cd08285          59 HEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPL-P  137 (351)
T ss_pred             cceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEEC-C
Confidence            4789999999999999999999986                                 2789999999975  79999 8


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++.. +++.++.++.+||+++ ..+.++++++|||+|+ |++|++++|+|+..|+ .|+++++++++.+.++ ++|++
T Consensus       138 ~~~~~~-~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~  213 (351)
T cd08285         138 DGLTDE-QAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGI-GPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK-EYGAT  213 (351)
T ss_pred             CCCCHH-HhhhhccchhhHHHHH-HccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCc
Confidence            885443 3677888999999996 5678999999999974 9999999999999999 5888888888999888 89999


Q ss_pred             eeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccc--hHHHHhcce
Q 024411          128 EAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN--LMYLVSKRL  203 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~--~~~~~~~~~  203 (268)
                      +++++... ++...+...+.+ ++|+++||+|+ ..+..++++++++|+++.+|.....    .....+  ......+..
T Consensus       214 ~~v~~~~~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~  288 (351)
T cd08285         214 DIVDYKNG-DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGED----DYLPIPREEWGVGMGHK  288 (351)
T ss_pred             eEecCCCC-CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC----ceeecChhhhhhhcccc
Confidence            89988776 777788877766 89999999997 6889999999999999999874421    000111  111122344


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCcee---eeehhcccccHHHHHHHHHcCCc-cceEEEEe
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY---VEDMAEGLESAPAALIGLFSGQN-VGKQVVAV  266 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  266 (268)
                      ++.+....    ...+.++++++++.+|++++   .+...++++++++|++.+.+++. ..|+++++
T Consensus       289 ~i~~~~~~----~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         289 TINGGLCP----GGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             EEEEeecC----CccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            44432221    12466888999999999987   44557899999999999998774 68999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=8.8e-30  Score=210.36  Aligned_cols=249  Identities=21%  Similarity=0.257  Sum_probs=202.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV   74 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~   74 (268)
                      .+++|+|+++|+  ..+++||+|+++         |+|++|+.++.+.++++ |++++.. +++++++++.+||+++...
T Consensus        62 ~e~~G~v~~vG~--~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~i-p~~~~~~-~aa~~~~~~~ta~~~l~~~  137 (320)
T cd08243          62 IEAVGEVEEAPG--GTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAI-DSDLSWA-ELAALPETYYTAWGSLFRS  137 (320)
T ss_pred             ceeEEEEEEecC--CCCCCCCEEEEecCCCCCCCCcccceEEEcCHHHcEeC-CCCCCHH-HHHhcchHHHHHHHHHHHh
Confidence            478999999995  579999999986         78999999999999999 8885443 3788999999999999888


Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      ..+.++++|+|+|++|++|++++|+|+..|++|+++++++++.+.+. ++|++++++. .. ++...+++. ++++|+++
T Consensus       138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~-~~-~~~~~i~~~-~~~~d~vl  213 (320)
T cd08243         138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGADEVVID-DG-AIAEQLRAA-PGGFDKVL  213 (320)
T ss_pred             cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEec-Cc-cHHHHHHHh-CCCceEEE
Confidence            88999999999999999999999999999999999999999999997 8999877654 33 677777777 44899999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      ||+|+..+...+++++++|+++.+|...+....... .......+.+++++.+.....   .....++.+.+++.++.++
T Consensus       214 ~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  289 (320)
T cd08243         214 ELVGTATLKDSLRHLRPGGIVCMTGLLGGQWTLEDF-NPMDDIPSGVNLTLTGSSSGD---VPQTPLQELFDFVAAGHLD  289 (320)
T ss_pred             ECCChHHHHHHHHHhccCCEEEEEccCCCCcccCCc-chhhhhhhccceEEEecchhh---hhHHHHHHHHHHHHCCcee
Confidence            999998889999999999999999864321100000 011111235667766655432   2245688889999999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.+...++++++++|++.+.++...+|+++
T Consensus       290 ~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         290 IPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             cccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            877778999999999999998888888875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.97  E-value=1.2e-29  Score=213.17  Aligned_cols=249  Identities=24%  Similarity=0.354  Sum_probs=204.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe----------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG----------------------------------------------------MTG   31 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~----------------------------------------------------~g~   31 (268)
                      .|++|+|.++|++++++++||+|++                                                    .|+
T Consensus        61 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (365)
T cd08278          61 HEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSS  140 (365)
T ss_pred             cceeEEEEEeCCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccc
Confidence            4789999999999999999999983                                                    278


Q ss_pred             cceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEE
Q 024411           32 WEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGS  110 (268)
Q Consensus        32 ~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~  110 (268)
                      |++|++++++.++++ |++++.. .++.+++++.+|+.++.....++++++|+|+|+ |++|++++|+|+..|+ .++++
T Consensus       141 ~~~y~~v~~~~~~~i-P~~~s~~-~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~  217 (365)
T cd08278         141 FATYAVVHERNVVKV-DKDVPLE-LLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAV  217 (365)
T ss_pred             eeeEEEecchhEEEC-CCCCCHH-HhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Confidence            999999999999999 9885544 377899999999999888888999999999975 9999999999999999 58888


Q ss_pred             eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCC
Q 024411          111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKP  189 (268)
Q Consensus       111 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  189 (268)
                      ++++++.+.++ ++|++.+++++.. ++.+.+.+.+++++|+++||+|. ..+..++++++++|+++.+|....    ..
T Consensus       218 ~~~~~k~~~~~-~~g~~~~i~~~~~-~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~----~~  291 (365)
T cd08278         218 DIVDSRLELAK-ELGATHVINPKEE-DLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPP----GA  291 (365)
T ss_pred             eCCHHHHHHHH-HcCCcEEecCCCc-CHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCC----CC
Confidence            88999999888 8999888888775 77778887773389999999996 788999999999999999987421    11


Q ss_pred             ccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee-eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          190 EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY-VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ....+...++.+++++.++.....  ...+.++++++++.++.+++ .+...++++++++|++.+.+++.. |+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~  364 (365)
T cd08278         292 EVTLDVNDLLVSGKTIRGVIEGDS--VPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI-KPVL  364 (365)
T ss_pred             ccccCHHHHhhcCceEEEeecCCc--ChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce-EEEE
Confidence            223445555578888887765332  12567788899999998854 233578999999999999887654 7776

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=1.7e-29  Score=210.33  Aligned_cols=245  Identities=23%  Similarity=0.284  Sum_probs=201.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .+++|+|..+|++++.|++||+|++                               .|+++||+.++.+.++++ |++++
T Consensus        59 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-p~~~~  137 (338)
T PRK09422         59 HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKV-PEGLD  137 (338)
T ss_pred             cccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeC-CCCCC
Confidence            4789999999999999999999985                               378999999999999999 88855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. ++++++..+.|||+++ ..+.++++++|||+| .|++|++++++++. .|++|+++++++++.+.++ ++|++.+++
T Consensus       138 ~~-~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~  213 (338)
T PRK09422        138 PA-QASSITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK-EVGADLTIN  213 (338)
T ss_pred             HH-HeehhhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HcCCcEEec
Confidence            44 3778899999999998 667899999999999 59999999999998 4999999999999999997 899988888


Q ss_pred             cCC-hhhHHHHHHHHCCCCcc-EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKE-EADLNAALKRYFPEGID-IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~-~~~~~~~~~~~~~~~~d-~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      ++. . ++.+.+++.++ ++| +++++.++..+..++++++++|+++.+|....      ....+......+..++.++.
T Consensus       214 ~~~~~-~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~  285 (338)
T PRK09422        214 SKRVE-DVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE------SMDLSIPRLVLDGIEVVGSL  285 (338)
T ss_pred             ccccc-cHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC------CceecHHHHhhcCcEEEEec
Confidence            754 4 66677777665 688 45555556889999999999999999986421      11224445556777776544


Q ss_pred             ecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ...     .+.++++.+++.+|.+.+.+. .++++++++|++.+.++...||+++++.
T Consensus       286 ~~~-----~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        286 VGT-----RQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             CCC-----HHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEecC
Confidence            322     567888999999999877654 5799999999999999999999999875

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=2.1e-29  Score=209.83  Aligned_cols=245  Identities=24%  Similarity=0.318  Sum_probs=205.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|..+|++++.+++||+|+.                              .|+|++|++++.+.++++ |++++.
T Consensus        62 ~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-p~~~~~  140 (338)
T cd08254          62 HEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPV-PDGVPF  140 (338)
T ss_pred             ccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEEC-CCCCCH
Confidence            4678999999999999999999986                              278999999999999999 888544


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . .++.++.++++||+++.....+.++++|||.| +|++|++++++|+..|++|+++++++++.+.++ ++|.+++++..
T Consensus       141 ~-~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~-~~g~~~~~~~~  217 (338)
T cd08254         141 A-QAAVATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK-ELGADEVLNSL  217 (338)
T ss_pred             H-HhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCC
Confidence            4 37788999999999998888899999999986 599999999999999999999999999999998 89988888777


Q ss_pred             ChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          134 EEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      +. .....+ ...++ ++|+++||+|. ..+..++++++++|+++.+|....      ....+...++.++.++.++...
T Consensus       218 ~~-~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~  289 (338)
T cd08254         218 DD-SPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD------KLTVDLSDLIARELRIIGSFGG  289 (338)
T ss_pred             Cc-CHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC------CCccCHHHHhhCccEEEEeccC
Confidence            64 555555 44444 89999999986 688999999999999999976431      1123345667788877775443


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .     .+.++.+.+++.++.+++. ...+++++++++++.+.+++..+|+++++
T Consensus       290 ~-----~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         290 T-----PEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             C-----HHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            2     5678889999999999876 56889999999999999999999999874

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=1.1e-29  Score=212.34  Aligned_cols=247  Identities=22%  Similarity=0.208  Sum_probs=201.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------------ccccceeEeecCC--cceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------------MTGWEEYSLITAP--HLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------~g~~~~~~~v~~~--~~~~~~p   48 (268)
                      .+++|+|+++|++++++++||+|++                                 .|+|++|++++.+  .++++ |
T Consensus        60 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l-P  138 (347)
T cd05278          60 HEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKI-P  138 (347)
T ss_pred             cceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEEC-C
Confidence            4679999999999999999999986                                 2789999999998  89999 8


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++.. +++.++.++.+||+++ ...+++++++|||.|+ |++|++++|+|+.+|+ +++++.+++++.+.++ ++|.+
T Consensus       139 ~~~~~~-~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~-~~g~~  214 (347)
T cd05278         139 DGLPDE-DALMLSDILPTGFHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSNPERLDLAK-EAGAT  214 (347)
T ss_pred             CCCCHH-HHhhhcchhhheeehh-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence            885443 3778889999999998 6678999999999875 9999999999999997 8888888888888888 89988


Q ss_pred             eeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          128 EAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      .+++++.. ++...++..+++ ++|+++|++|+ ..+..++++++++|+++.+|...+.     .........+.+++++
T Consensus       215 ~vi~~~~~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~  288 (347)
T cd05278         215 DIINPKNG-DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKP-----DPLPLLGEWFGKNLTF  288 (347)
T ss_pred             EEEcCCcc-hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCC-----cccCccchhhhceeEE
Confidence            88888876 777888877765 89999999998 7889999999999999999854321     1001112334667776


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCCceee--eehhcccccHHHHHHHHHcCCc-cceEEEEe
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLESAPAALIGLFSGQN-VGKQVVAV  266 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  266 (268)
                      .+.....     .+.++++.+++.++.+++.  +...++++++++|++.+.+++. .+|+|+++
T Consensus       289 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         289 KTGLVPV-----RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             EeeccCc-----hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            6644322     5678899999999999863  5577899999999999988776 68998763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=3.1e-29  Score=206.78  Aligned_cols=254  Identities=26%  Similarity=0.371  Sum_probs=211.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|..+|+++.++++||+|+++   |++++|+.++.+.++++ |++++.. ++++++....++++++....++.++
T Consensus        60 ~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~g  137 (320)
T cd05286          60 VEGAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRVVPASRLVKL-PDGISDE-TAAALLLQGLTAHYLLRETYPVKPG  137 (320)
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEEecCCCceeEEEEecHHHceeC-CCCCCHH-HHhhccchHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999985   79999999999999999 8885444 3677889999999999888889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++++|+|++|++|++++++++.+|++|+++++++++.+.++ ++|++++++.... ++...+...+.+ ++|+++||+++
T Consensus       138 ~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vl~~~~~  215 (320)
T cd05286         138 DTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR-AAGADHVINYRDE-DFVERVREITGGRGVDVVYDGVGK  215 (320)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HCCCCEEEeCCch-hHHHHHHHHcCCCCeeEEEECCCc
Confidence            99999999999999999999999999999999999999997 8999888877765 777888887766 89999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc---ccchHHHHHHHHHHHHcCCceee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKLVYV  236 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~~~  236 (268)
                      .....++++++++|+++.+|....     .....+...+..+++++.+.....+   +....+.+.++.+++.++.+.+.
T Consensus       216 ~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  290 (320)
T cd05286         216 DTFEGSLDSLRPRGTLVSFGNASG-----PVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE  290 (320)
T ss_pred             HhHHHHHHhhccCcEEEEEecCCC-----CCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc
Confidence            888899999999999999986432     1112233333477888876554332   22344567788899999998877


Q ss_pred             eehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          237 EDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       237 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ....|++++++++++.+.++...+|+++.+
T Consensus       291 ~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         291 IGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             ccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            767899999999999999988889999863

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=2.2e-29  Score=210.15  Aligned_cols=245  Identities=21%  Similarity=0.229  Sum_probs=200.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCc-----ceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPH-----LFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~-----~~~~~p   48 (268)
                      .+++|+|+++|++++.+++||+|+++                              |+|++|++++.+.     ++++ |
T Consensus        59 ~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~l-P  137 (343)
T cd08235          59 HEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKL-P  137 (343)
T ss_pred             cceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEEC-C
Confidence            46899999999999999999999974                              7899999999998     9999 9


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++.. +++ +..++.+||+++... .+.++++|+|+| +|++|++++|+|+..|++ |+++.+++++.+.+. ++|.+
T Consensus       138 ~~~~~~-~aa-~~~~~~~a~~~l~~~-~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~-~~g~~  212 (343)
T cd08235         138 DNVSFE-EAA-LVEPLACCINAQRKA-GIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK-KLGAD  212 (343)
T ss_pred             CCCCHH-HHH-hhhHHHHHHHHHHhc-CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCc
Confidence            884443 244 447889999999654 899999999997 599999999999999998 888888999999887 89998


Q ss_pred             eeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          128 EAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      +++++++. ++.+.+++.+++ ++|+++||+++ ..+...+++++++|+++.++.....    .....+......+++.+
T Consensus       213 ~~~~~~~~-~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~l  287 (343)
T cd08235         213 YTIDAAEE-DLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKG----STVNIDPNLIHYREITI  287 (343)
T ss_pred             EEecCCcc-CHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCC----CCcccCHHHHhhCceEE
Confidence            88888876 788888887776 89999999997 5888999999999999998763321    11222334555677777


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .+.....     .+.++++.+++.++.++  +.+...+++++++++++.+.+++ .+|+|+.
T Consensus       288 ~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         288 TGSYAAS-----PEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             EEEecCC-----hhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence            6655433     56788889999999986  34556889999999999999988 8999873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=2.3e-29  Score=209.95  Aligned_cols=243  Identities=19%  Similarity=0.214  Sum_probs=196.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .+++|+|+++|+++++|++||+|++                               .|+|++|++++++.++++ |++++
T Consensus        60 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-P~~~~  138 (343)
T cd05285          60 HESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKL-PDNVS  138 (343)
T ss_pred             cceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEEC-cCCCC
Confidence            4789999999999999999999985                               378999999999999999 98844


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. +++.+ .++.+|++++ ..+.++++++++|+|+ |++|++++|+|+.+|++ |+++++++++.+.++ ++|++++++
T Consensus       139 ~~-~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~  213 (343)
T cd05285         139 LE-EGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK-ELGATHTVN  213 (343)
T ss_pred             HH-Hhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEec
Confidence            43 24444 6788999997 7789999999999875 89999999999999997 899988889999887 899998888


Q ss_pred             cCChhhH---HHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeee
Q 024411          132 YKEEADL---NAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRME  206 (268)
Q Consensus       132 ~~~~~~~---~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (268)
                      ++.. ++   .+.+.+.+++ ++|+++||.|+ ..+...+++++++|+++.+|.....      ...++.....+++++.
T Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~  286 (343)
T cd05285         214 VRTE-DTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPE------VTLPLSAASLREIDIR  286 (343)
T ss_pred             cccc-cchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC------CccCHHHHhhCCcEEE
Confidence            8765 53   6777777776 89999999998 4889999999999999999863311      1223334556666666


Q ss_pred             eEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCC-ccceEEEE
Q 024411          207 GFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQ-NVGKQVVA  265 (268)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~  265 (268)
                      ++...      .+.++++++++.++.++  +.+.++++++++++|++.+.+++ ..+|++|.
T Consensus       287 ~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~  342 (343)
T cd05285         287 GVFRY------ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIE  342 (343)
T ss_pred             EeccC------hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence            65432      25678888999999865  44567889999999999999875 45899883

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=3.6e-29  Score=208.88  Aligned_cols=244  Identities=20%  Similarity=0.223  Sum_probs=200.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------------------cccceeEeecCC--cceeec
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------------------TGWEEYSLITAP--HLFKIQ   47 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------g~~~~~~~v~~~--~~~~~~   47 (268)
                      .|++|+|.++|++++.+++||+|++.                                  |+|++|++++.+  .++++ 
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~-  137 (344)
T cd08284          59 HEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKL-  137 (344)
T ss_pred             cceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEEC-
Confidence            46899999999999999999999872                                  789999999975  89999 


Q ss_pred             CCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC
Q 024411           48 HTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        48 p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~  126 (268)
                      |++++.. +++.+++.++|||+++.. ..+.++++|+|+| +|++|++++|+|+..|+ +|+++++++++.+.+. ++|+
T Consensus       138 p~~l~~~-~a~~l~~~~~ta~~~~~~-~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~  213 (344)
T cd08284         138 PDGLSDE-AALLLGDILPTGYFGAKR-AQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA-ALGA  213 (344)
T ss_pred             CCCCCHH-HhhhhcCchHHHHhhhHh-cCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HhCC
Confidence            8885444 377889999999999965 7889999999997 59999999999999997 8999988888888888 8887


Q ss_pred             CeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          127 DEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      . .++.+.. ++...+.+.+++ ++|+++|++|+ ..+..++++++++|+++.+|.....     .........+.++++
T Consensus       214 ~-~~~~~~~-~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~  286 (344)
T cd08284         214 E-PINFEDA-EPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAE-----EFPFPGLDAYNKNLT  286 (344)
T ss_pred             e-EEecCCc-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCC-----CccccHHHHhhcCcE
Confidence            5 4666655 677788887766 89999999996 7889999999999999999874321     112334556778887


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+...     ...+.++++++++.++.+++  .+.+++++++++++++.+.+++. +|+|++
T Consensus       287 ~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~  343 (344)
T cd08284         287 LRFGRC-----PVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD  343 (344)
T ss_pred             EEEecC-----CcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence            765421     23667889999999999875  35678899999999999988777 999985

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3e-29  Score=209.11  Aligned_cols=244  Identities=19%  Similarity=0.215  Sum_probs=193.2

Q ss_pred             CccceEEEEecCCCCC-CCCCCeEEec--------------------cccceeEeecCCcceeecCCCCCchhhhhhccc
Q 024411            4 ISGYGVAKVLDSENPE-FNKGDLVWGM--------------------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGM   62 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~-~~~Gd~V~~~--------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~   62 (268)
                      .+++|+|.++|+++++ |++||+|+++                    |+|+||++++.+.++++ |++++.  +.++++.
T Consensus        69 ~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-P~~~s~--~~a~~~~  145 (341)
T cd08262          69 HEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRV-PDGLSM--EDAALTE  145 (341)
T ss_pred             cceeEEEEEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEEC-CCCCCH--HHhhhhh
Confidence            4678999999999997 9999999974                    78999999999999999 888444  3445778


Q ss_pred             hHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHH-
Q 024411           63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNA-  140 (268)
Q Consensus        63 ~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-  140 (268)
                      ++++||+++ ..++++++++|||+|+ |++|++++|+++.+|++ ++++++++++.+.++ ++|++++++++.. +... 
T Consensus       146 ~~~~a~~~~-~~~~~~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~~~~  221 (341)
T cd08262         146 PLAVGLHAV-RRARLTPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPERRALAL-AMGADIVVDPAAD-SPFAA  221 (341)
T ss_pred             hHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEEcCCCc-CHHHH
Confidence            889999996 6788999999999975 99999999999999996 666667888888888 8998888887653 2211 


Q ss_pred             --HHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccc
Q 024411          141 --ALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHL  216 (268)
Q Consensus       141 --~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (268)
                        .+....++ ++|+++|++|+ ..+..++++++++|+++.+|.....      ........+.+++++.+.....    
T Consensus       222 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~----  291 (341)
T cd08262         222 WAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMES------DNIEPALAIRKELTLQFSLGYT----  291 (341)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC------CccCHHHHhhcceEEEEEeccc----
Confidence              23444444 89999999998 5788899999999999999874211      1111222245666666544332    


Q ss_pred             hHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          217 YPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       217 ~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                       .+.++++.+++.+|.+.+  .+.+.+++++++++++.+.+++..+|+|++
T Consensus       292 -~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         292 -PEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             -HHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence             457888999999999875  346789999999999999999989999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=5.5e-29  Score=207.84  Aligned_cols=246  Identities=21%  Similarity=0.182  Sum_probs=202.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCC--cceeecCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAP--HLFKIQHTD   50 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~--~~~~~~p~~   50 (268)
                      .|++|+|+++|++++.+++||+|+..                               |+|++|++++.+  .++++ |++
T Consensus        60 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l-p~~  138 (345)
T cd08286          60 HEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKL-PEG  138 (345)
T ss_pred             ccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEEC-CCC
Confidence            36899999999999999999999863                               788999999998  89999 888


Q ss_pred             CCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCee
Q 024411           51 VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEA  129 (268)
Q Consensus        51 ~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v  129 (268)
                      ++.. .++.+++.+++||+++...+++.+++++||+|+ |++|++++|+++..| .+|+++.+++.+.+.++ ++|++.+
T Consensus       139 ~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~  215 (345)
T cd08286         139 VDEE-AAVMLSDILPTGYECGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK-KLGATHT  215 (345)
T ss_pred             CCHH-HhhhccchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCce
Confidence            5443 377888999999998777788999999999886 999999999999999 69999888888888888 8999888


Q ss_pred             eecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeee
Q 024411          130 FNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG  207 (268)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (268)
                      +++++. ++...+...+++ ++|+++||+|. ..+..++++++++|+++.+|....      ....+...++.+++++.+
T Consensus       216 v~~~~~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~  288 (345)
T cd08286         216 VNSAKG-DAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGK------PVDLHLEKLWIKNITITT  288 (345)
T ss_pred             eccccc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCC------CCCcCHHHHhhcCcEEEe
Confidence            988775 777777777766 89999999986 678889999999999999986321      122345555778888876


Q ss_pred             EEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCc--cceEEEEe
Q 024411          208 FIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQN--VGKQVVAV  266 (268)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~--~gkvvi~~  266 (268)
                      ....      .+.++++.+++.++.+++  .+.+++++++++++++.+.+...  ..|++|++
T Consensus       289 ~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         289 GLVD------TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             ecCc------hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            4321      245788889999998875  35678999999999999987643  45998864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.97  E-value=6e-29  Score=205.94  Aligned_cols=250  Identities=23%  Similarity=0.351  Sum_probs=196.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV   74 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~   74 (268)
                      .|++|+|+++  +++.+++||+|++.         |+|++|++++.+.++++ |++++.. +++.+++.+.+||+++...
T Consensus        63 ~e~~G~v~~~--~~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~l-p~~~~~~-~aa~~~~~~~ta~~~l~~~  138 (325)
T cd05280          63 IDAAGTVVSS--DDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPL-PEGLSLR-EAMILGTAGFTAALSVHRL  138 (325)
T ss_pred             cccEEEEEEe--CCCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEEC-CCCCCHH-HHHhhHHHHHHHHHHHHHH
Confidence            4678999988  56789999999973         78999999999999999 8885544 3778899999999998665


Q ss_pred             cCC--C-CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           75 CSP--K-HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        75 ~~~--~-~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ...  . .+++|+|+|++|++|++++++|+.+|++|+++++++++.+.++ ++|++++++.+.. . ....+...++++|
T Consensus       139 ~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~-~~~~~~~~~~~~d  215 (325)
T cd05280         139 EDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK-SLGASEVLDREDL-L-DESKKPLLKARWA  215 (325)
T ss_pred             hhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEcchhH-H-HHHHHHhcCCCcc
Confidence            433  5 4579999999999999999999999999999999999999998 8999888876542 1 1222333334799


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-cchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (268)
                      +++|++|+..+..++++++++|+++.+|......     ...+...++.+++++.+....... ....+.++.+.+++..
T Consensus       216 ~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (325)
T cd05280         216 GAIDTVGGDVLANLLKQTKYGGVVASCGNAAGPE-----LTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKP  290 (325)
T ss_pred             EEEECCchHHHHHHHHhhcCCCEEEEEecCCCCc-----cccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhc
Confidence            9999999998999999999999999998743211     122334445788888887765432 2234556667777777


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.. +.+..++++++++++++.+.+++..||+|+++
T Consensus       291 ~~~-~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         291 DLL-EIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             CCc-cceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            744 45677899999999999999999999999864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.97  E-value=4.1e-29  Score=207.08  Aligned_cols=251  Identities=24%  Similarity=0.347  Sum_probs=192.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV   74 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~   74 (268)
                      .|++|+|+++  ++..+++||+|+..         |+|+||++++++.++++ |++++.. +++.+++.+.+||+++...
T Consensus        63 ~e~~G~V~~~--~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-p~~~~~~-~a~~~~~~~~ta~~~l~~~  138 (326)
T cd08289          63 IDLAGTVVES--NDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPL-PKGLTLK-EAMILGTAGFTAALSIHRL  138 (326)
T ss_pred             cceeEEEEEc--CCCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEEC-CCCCCHH-HHhhhhhHHHHHHHHHHHH
Confidence            4678888875  45779999999874         89999999999999999 8885444 3778888999999988644


Q ss_pred             cC---CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           75 CS---PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        75 ~~---~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+   ..++++|+|+|++|++|++++|+|+.+|++|+++++++++.+.++ ++|++++++.++.  ....+....++++|
T Consensus       139 ~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~--~~~~~~~~~~~~~d  215 (326)
T cd08289         139 EENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK-KLGAKEVIPREEL--QEESIKPLEKQRWA  215 (326)
T ss_pred             HhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-HcCCCEEEcchhH--HHHHHHhhccCCcC
Confidence            32   345789999999999999999999999999999999999999998 8999888877642  34455555434899


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  230 (268)
                      +++||+|+..+...+++++++|+++.+|.....     ........++.+++++.+...... .....+.++.+.+.+..
T Consensus       216 ~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (326)
T cd08289         216 GAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGG-----EVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKP  290 (326)
T ss_pred             EEEECCcHHHHHHHHHHhhcCCEEEEEeecCCC-----CCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCc
Confidence            999999998889999999999999999875321     111224455688899888764321 11223344444444432


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.+...+..+++++++++||+.+.+++..||+|+++
T Consensus       291 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         291 TQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             cccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            333334577899999999999999999999999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=6.5e-29  Score=208.62  Aligned_cols=249  Identities=20%  Similarity=0.297  Sum_probs=204.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------------------ccccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------------------MTGWE   33 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------------------~g~~~   33 (268)
                      .+++|+|+.+|++++.+++||+|++                                                  .|+|+
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  138 (363)
T cd08279          59 HEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFA  138 (363)
T ss_pred             ccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccce
Confidence            4678999999999999999999987                                                  27899


Q ss_pred             eeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeC
Q 024411           34 EYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAG  112 (268)
Q Consensus        34 ~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~  112 (268)
                      +|++++.+.++++ |++++.. +++.+++++.+||+++....++.++++|+|+|+ |++|++++++++..|++ |+.+++
T Consensus       139 ~~~~~~~~~~~~l-p~~~~~~-~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~  215 (363)
T cd08279         139 EYTVVPEASVVKI-DDDIPLD-RAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDP  215 (363)
T ss_pred             eeEEeccccEEEC-CCCCChH-HeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcC
Confidence            9999999999999 8885544 367788899999999888888999999999965 99999999999999996 999998


Q ss_pred             CHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCc
Q 024411          113 SKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPE  190 (268)
Q Consensus       113 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  190 (268)
                      ++++.+.++ ++|++++++++.. ++...++..+.+ ++|+++|++++ ..+..++++++++|+++.++....    ...
T Consensus       216 ~~~~~~~~~-~~g~~~vv~~~~~-~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~----~~~  289 (363)
T cd08279         216 VPEKLELAR-RFGATHTVNASED-DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPP----GET  289 (363)
T ss_pred             CHHHHHHHH-HhCCeEEeCCCCc-cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCC----Ccc
Confidence            999999887 8999888888776 777888887755 89999999995 788999999999999999976431    112


Q ss_pred             cccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEE
Q 024411          191 GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQV  263 (268)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv  263 (268)
                      ...+...+..++..+.++.....  ...+.++++++++.++.+++  .+.++++++++++|++.+.+++..+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         290 VSLPALELFLSEKRLQGSLYGSA--NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             cccCHHHHhhcCcEEEEEEecCc--CcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            23344455556666666554321  23577899999999999876  3667899999999999999887765554

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=4.8e-29  Score=207.30  Aligned_cols=244  Identities=25%  Similarity=0.332  Sum_probs=200.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|+++|++++.+++||+|++.                              |+|++|+.++.+.++++ |++++.
T Consensus        60 ~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-p~~~~~  138 (334)
T PRK13771         60 HEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKV-PPNVSD  138 (334)
T ss_pred             ccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEEC-CCCCCH
Confidence            47899999999999999999999974                              68999999999999999 888554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . .++.+.+.+.+||+++... .+.++++++|+|++|.+|++++++++..|++++++++++++.+.++ ++ ++++++.+
T Consensus       139 ~-~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~-~~-~~~~~~~~  214 (334)
T PRK13771        139 E-GAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS-KY-ADYVIVGS  214 (334)
T ss_pred             H-HhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HH-HHHhcCch
Confidence            4 3778889999999999776 8999999999999999999999999999999999999999999887 77 65566543


Q ss_pred             ChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          134 EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                         ++.+.+++.  +++|+++||+|+.....++++++++|+++.+|.....    ..........+.+++++.+....  
T Consensus       215 ---~~~~~v~~~--~~~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--  283 (334)
T PRK13771        215 ---KFSEEVKKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPS----PTYSLRLGYIILKDIEIIGHISA--  283 (334)
T ss_pred             ---hHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCC----CCcccCHHHHHhcccEEEEecCC--
Confidence               344455554  3699999999998889999999999999999874321    11012233335677887776322  


Q ss_pred             ccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          214 YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                         ..+.++.+++++.++.+++.+...++++++++|++.+.++...+|++++.
T Consensus       284 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        284 ---TKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             ---CHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence               26678899999999999887778899999999999999888889999875

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=5.7e-29  Score=207.62  Aligned_cols=250  Identities=21%  Similarity=0.270  Sum_probs=202.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|..+|++++.|++||+|+++                              |+|++|++++.+.++++ |++++.
T Consensus        58 ~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-P~~~~~  136 (343)
T cd08236          58 HEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKI-PDHVDY  136 (343)
T ss_pred             cceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEEC-cCCCCH
Confidence            57899999999999999999999974                              78999999999999999 888544


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      . +++.+ .++.+||+++. ...+.++++|+|+|+ |.+|++++|+|+.+|++ |+++++++++.+.++ ++|++.++++
T Consensus       137 ~-~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~-g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~-~~g~~~~~~~  211 (343)
T cd08236         137 E-EAAMI-EPAAVALHAVR-LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR-ELGADDTINP  211 (343)
T ss_pred             H-HHHhc-chHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEecC
Confidence            3 24444 67889999985 678999999999974 99999999999999997 999998988888887 8998888888


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      +.. . ...+....++ ++|+++||.|+ ..+..++++++++|+++.+|...+.   .......+..++.+++++.++..
T Consensus       212 ~~~-~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  286 (343)
T cd08236         212 KEE-D-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD---VTLSEEAFEKILRKELTIQGSWN  286 (343)
T ss_pred             ccc-c-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC---cccccCCHHHHHhcCcEEEEEee
Confidence            775 6 6677777766 79999999986 6789999999999999999864311   01112234455678888888776


Q ss_pred             cccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHc-CCccceEEE
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFS-GQNVGKQVV  264 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~-~~~~gkvvi  264 (268)
                      ........+.++++.+++.++.+.  +.+...+++++++++++.+++ ++..+|+|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         287 SYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             ccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            443223456778889999999875  445678899999999999998 667788874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.7e-29  Score=204.15  Aligned_cols=247  Identities=20%  Similarity=0.200  Sum_probs=201.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGE   81 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~   81 (268)
                      .+++|+|+++|++++.+++||+|+++  |+|++|++++.+.++++ |+++  . .++.+..++.++++++. ..++++++
T Consensus        57 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~g~~~~~~~v~~~~~~~l-P~~~--~-~~~~~~~~~~~a~~~~~-~~~~~~~~  131 (312)
T cd08269          57 HEGWGRVVALGPGVRGLAVGDRVAGLSGGAFAEYDLADADHAVPL-PSLL--D-GQAFPGEPLGCALNVFR-RGWIRAGK  131 (312)
T ss_pred             eeeEEEEEEECCCCcCCCCCCEEEEecCCcceeeEEEchhheEEC-CCch--h-hhHHhhhhHHHHHHHHH-hcCCCCCC
Confidence            46789999999999999999999986  89999999999999999 8874  2 23322378889999986 78899999


Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      +++|+| +|++|++++|+|+..|++ |+++++++++.+.+. ++|++++++.+.. ++...+.+.+++ ++|+++||.|+
T Consensus       132 ~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~l~~~~~~~~vd~vld~~g~  208 (312)
T cd08269         132 TVAVIG-AGFIGLLFLQLAAAAGARRVIAIDRRPARLALAR-ELGATEVVTDDSE-AIVERVRELTGGAGADVVIEAVGH  208 (312)
T ss_pred             EEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEecCCCc-CHHHHHHHHcCCCCCCEEEECCCC
Confidence            999997 599999999999999998 999998888888887 8999888887665 788888888776 89999999986


Q ss_pred             -hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--e
Q 024411          160 -KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--V  236 (268)
Q Consensus       160 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~  236 (268)
                       ..+...+++++++|+++.+|..+.     .....++.....+++++.++.... +....+.++++.+++.++.+++  .
T Consensus       209 ~~~~~~~~~~l~~~g~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  282 (312)
T cd08269         209 QWPLDLAGELVAERGRLVIFGYHQD-----GPRPVPFQTWNWKGIDLINAVERD-PRIGLEGMREAVKLIADGRLDLGSL  282 (312)
T ss_pred             HHHHHHHHHHhccCCEEEEEccCCC-----CCcccCHHHHhhcCCEEEEecccC-ccchhhHHHHHHHHHHcCCCCchhh
Confidence             678899999999999999986431     112233345566777776654332 2233578899999999999986  3


Q ss_pred             eehhcccccHHHHHHHHHcCCc-cceEEE
Q 024411          237 EDMAEGLESAPAALIGLFSGQN-VGKQVV  264 (268)
Q Consensus       237 ~~~~~~~~~~~~a~~~~~~~~~-~gkvvi  264 (268)
                      +.++++++++++|++.+.+++. .+|+++
T Consensus       283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         283 LTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             eeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            5678999999999999998754 578876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08251 polyketide_synthase polyketide synthase

Probab=99.97  E-value=4.6e-29  Score=204.42  Aligned_cols=251  Identities=20%  Similarity=0.295  Sum_probs=205.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      .+++|+|.++|++++++++||+|+++     |+|++|++++.+.++++ |++++.. .++.++.++.+||+++. ...+.
T Consensus        43 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~aa~~~~~~~ta~~~l~-~~~~~  119 (303)
T cd08251          43 FEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPEDQVVRK-PASLSFE-EACALPVVFLTVIDAFA-RAGLA  119 (303)
T ss_pred             ceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccHHHeEEC-CCCCCHH-HHHHhHHHHHHHHHHHH-hcCCC
Confidence            46789999999999999999999986     79999999999999999 9885444 37788899999999984 67899


Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~  157 (268)
                      ++++++|++++|++|++++|+++.+|++|+++++++++.+.++ ++|++.+++.... ++...+...+++ ++|+++|++
T Consensus       120 ~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~~~~~d~v~~~~  197 (303)
T cd08251         120 KGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINYVEE-DFEEEIMRLTGGRGVDVVINTL  197 (303)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCCc-cHHHHHHHHcCCCCceEEEECC
Confidence            9999999999999999999999999999999999999999997 8999888888776 788888887776 899999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc----ccchHHHHHHHHHHHHcCCc
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH----YHLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l  233 (268)
                      ++......+++++++|+++.++.....    ....... ..+.+++.+........    +....+.+.++.+++.++.+
T Consensus       198 ~~~~~~~~~~~l~~~g~~v~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  272 (303)
T cd08251         198 SGEAIQKGLNCLAPGGRYVEIAMTALK----SAPSVDL-SVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGEL  272 (303)
T ss_pred             cHHHHHHHHHHhccCcEEEEEeccCCC----ccCccCh-hHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCc
Confidence            888888999999999999998764311    0011111 22344444444333221    22334667888899999999


Q ss_pred             eeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ++.....+++++++++++.+.+++..+|+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         273 RPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             cCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            8777778999999999999999888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=6.5e-29  Score=206.69  Aligned_cols=240  Identities=21%  Similarity=0.210  Sum_probs=200.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      .+++|+|+.+|++++.|++||+|+.                                      .|+|+||++++.+.+++
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  138 (337)
T cd05283          59 HEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFK  138 (337)
T ss_pred             cceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEE
Confidence            4789999999999999999999972                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g  125 (268)
                      + |++++.. .++.+.+.+.+||+++... .+.++++++|.| .|++|++++++++..|++|+++++++++.+.++ ++|
T Consensus       139 l-p~~~~~~-~aa~l~~~~~ta~~~~~~~-~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g  213 (337)
T cd05283         139 I-PEGLDSA-AAAPLLCAGITVYSPLKRN-GVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL-KLG  213 (337)
T ss_pred             C-CCCCCHH-HhhhhhhHHHHHHHHHHhc-CCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcC
Confidence            9 8885544 3778899999999998665 589999999977 599999999999999999999999999999998 899


Q ss_pred             CCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          126 FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      ++.+++.... ++..   . ..+++|+++||+|.. .+..++++++++|+++.+|....      ....+...++.++++
T Consensus       214 ~~~vi~~~~~-~~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~  282 (337)
T cd05283         214 ADEFIATKDP-EAMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEE------PLPVPPFPLIFGRKS  282 (337)
T ss_pred             CcEEecCcch-hhhh---h-ccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCC------CCccCHHHHhcCceE
Confidence            8888877653 3322   1 234799999999985 58999999999999999987432      112345566778999


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+.....     .+.++.+++++.++++++.+ ..++++++++||+.+.+++..||+|++
T Consensus       283 i~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         283 VAGSLIGG-----RKETQEMLDFAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             EEEecccC-----HHHHHHHHHHHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            99877654     56788899999999998765 578999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.97  E-value=1e-28  Score=204.22  Aligned_cols=253  Identities=28%  Similarity=0.392  Sum_probs=211.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      .|++|+|.++|+++++|++||+|+++        |++++|+.++.+.++++ |++++.. ++++++++..+||+++....
T Consensus        63 ~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~i-p~~~~~~-~aa~~~~~~~~a~~~l~~~~  140 (325)
T cd08253          63 SDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPL-PDGVSFE-QGAALGIPALTAYRALFHRA  140 (325)
T ss_pred             cceEEEEEeeCCCCCCCCCCCEEEEeccccCCCCcceeeEEEecHHHcEeC-CCCCCHH-HHhhhhhHHHHHHHHHHHHh
Confidence            46789999999999999999999974        78999999999999999 8885444 37789999999999998878


Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                      ++.++++++|+|+++++|++++++++..|++|+++++++++.+.+. ++|++++++.... ++...+.+.+.+ ++|+++
T Consensus       141 ~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi  218 (325)
T cd08253         141 GAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QAGADAVFNYRAE-DLADRILAATAGQGVDVII  218 (325)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-CHHHHHHHHcCCCceEEEE
Confidence            8999999999999999999999999999999999999999999887 8898888887765 677778777665 899999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCc
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l  233 (268)
                      ||+++......+++++++|+++.++...      .........++.+++++.+...+.. +....+.++.+.+++.++.+
T Consensus       219 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  292 (325)
T cd08253         219 EVLANVNLAKDLDVLAPGGRIVVYGSGG------LRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGAL  292 (325)
T ss_pred             ECCchHHHHHHHHhhCCCCEEEEEeecC------CcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCc
Confidence            9999988888999999999999998743      1112233344677777777664432 23345667778888899988


Q ss_pred             eeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++.....+++++++++++.+.++...+|+++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         293 RPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             cCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            877778899999999999999988899999863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.97  E-value=3.6e-29  Score=208.31  Aligned_cols=246  Identities=22%  Similarity=0.253  Sum_probs=200.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFY   72 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~   72 (268)
                      .+++|+|..+|++++.+++||+|+++           |+|++|++++.+.++++ |++++.. .++.+++++.+||+++.
T Consensus        60 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~~~~~~~~~~ta~~~l~  137 (339)
T cd08249          60 CDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKI-PDNISFE-EAATLPVGLVTAALALF  137 (339)
T ss_pred             eeeeEEEEEeCCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEEC-CCCCCHH-HceecchHHHHHHHHHh
Confidence            46789999999999999999999986           79999999999999999 8884444 36778889999999987


Q ss_pred             hhcCC----------CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHH
Q 024411           73 EVCSP----------KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAAL  142 (268)
Q Consensus        73 ~~~~~----------~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  142 (268)
                      ...++          .++++++|+|++|++|++++++++..|++|+.++ ++++.+.++ ++|+++++++... ++.+.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~-~~g~~~v~~~~~~-~~~~~l  214 (339)
T cd08249         138 QKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVK-SLGADAVFDYHDP-DVVEDI  214 (339)
T ss_pred             ccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHH-hcCCCEEEECCCc-hHHHHH
Confidence            66544          7899999999999999999999999999999988 568888887 8999889988876 788888


Q ss_pred             HHHCCCCccEEEeCCCh-hhHHhHHHhhhc--CCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc-------
Q 024411          143 KRYFPEGIDIYFENVGG-KLLDAVLPNMKI--RGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD-------  212 (268)
Q Consensus       143 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  212 (268)
                      ++.+++++|+++|++|+ ..+..+++++++  +|+++.+|......            .+..+++........       
T Consensus       215 ~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  282 (339)
T cd08249         215 RAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET------------EPRKGVKVKFVLGYTVFGEIPE  282 (339)
T ss_pred             HHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc------------cCCCCceEEEEEeeeecccccc
Confidence            77766689999999998 889999999999  99999998743211            011222322222211       


Q ss_pred             cccchHHHHHHHHHHHHcCCceeeeehhcc--cccHHHHHHHHHcCC-ccceEEEEe
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLVYVEDMAEG--LESAPAALIGLFSGQ-NVGKQVVAV  266 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~a~~~~~~~~-~~gkvvi~~  266 (268)
                      .+......++.+.+++.++.+.+.+...++  ++++++|++.+.+++ ..+|+|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         283 DREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             cccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            122334567888899999999877656777  999999999999988 889999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.4e-28  Score=204.62  Aligned_cols=248  Identities=25%  Similarity=0.332  Sum_probs=211.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------cccceeEeecCCcceeecCCCCCchhhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------TGWEEYSLITAPHLFKIQHTDVPLSYYTGI   59 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~   59 (268)
                      .+++|.|+.+|+++.++++||+|++.                        |+|++|+.++.+.++++ |++++.. +++.
T Consensus        63 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-p~~~~~~-~a~~  140 (336)
T cd08276          63 SDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRA-PDHLSFE-EAAT  140 (336)
T ss_pred             cceeEEEEEeCCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEEC-CCCCCHH-Hhhh
Confidence            46789999999999999999999874                        57999999999999999 8885443 3778


Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-hhhH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE-EADL  138 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~  138 (268)
                      ++.++.+||+++...+.++++++++|+| +|++|++++++++..|++|+++++++++.+.++ ++|.+++++.+. . ++
T Consensus       141 ~~~~~~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~  217 (336)
T cd08276         141 LPCAGLTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAK-ALGADHVINYRTTP-DW  217 (336)
T ss_pred             hhHHHHHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEcCCccc-CH
Confidence            8889999999998888899999999996 699999999999999999999999999999998 788888888776 4 67


Q ss_pred             HHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccch
Q 024411          139 NAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLY  217 (268)
Q Consensus       139 ~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (268)
                      ...+++.+++ ++|+++|+++...+..++++++++|+++.+|.....     ....+....+.+++++.+.....     
T Consensus       218 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----  287 (336)
T cd08276         218 GEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGF-----EAPVLLLPLLTKGATLRGIAVGS-----  287 (336)
T ss_pred             HHHHHHHcCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCC-----ccCcCHHHHhhcceEEEEEecCc-----
Confidence            7788888776 899999999988889999999999999999875421     11234566778999999887654     


Q ss_pred             HHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          218 PKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       218 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+.++++.+++.++.+.+.....+++++++++++.+.+++..+|+++++
T Consensus       288 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         288 RAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             HHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            5678888899999988877667889999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.97  E-value=1.1e-28  Score=207.20  Aligned_cols=249  Identities=19%  Similarity=0.256  Sum_probs=199.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      .|++|+|.++|++++.+++||+|++.                                                   |+|
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~  138 (365)
T cd05279          59 HEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTF  138 (365)
T ss_pred             cceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccc
Confidence            46789999999999999999999853                                                   589


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~  111 (268)
                      ++|++++.+.++++ |++++.. +++.+.+++.+||+++...+++.+++++||+|+ |++|++++++|+..|++ |++++
T Consensus       139 a~~~~v~~~~~~~l-P~~~~~~-~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~  215 (365)
T cd05279         139 AEYTVVSEISLAKI-DPDAPLE-KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVD  215 (365)
T ss_pred             cceEEecCCceEEC-CCCCCHH-HhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEe
Confidence            99999999999999 9885544 377788899999999888889999999999974 99999999999999995 67777


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCChh-hHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhh-cCCEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEEA-DLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMK-IRGRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~-~~G~~v~~g~~~~~~~~~  188 (268)
                      +++++.+.++ ++|++++++.++.+ ++.+.+++.+++++|+++|++|. ..+..++++++ ++|+++.+|....    .
T Consensus       216 ~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~----~  290 (365)
T cd05279         216 INKDKFEKAK-QLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPS----G  290 (365)
T ss_pred             CCHHHHHHHH-HhCCCeecccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCC----C
Confidence            7889999997 89998888776521 45566777665589999999986 78889999999 9999999876321    0


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      .....+...+ .++.++.|+...++  ...+.+.++++++.++.+++  .+.++++++++++|++.+.+++.. |+++
T Consensus       291 ~~~~~~~~~~-~~~~~l~g~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~  364 (365)
T cd05279         291 TEATLDPNDL-LTGRTIKGTVFGGW--KSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESI-RTIL  364 (365)
T ss_pred             CceeeCHHHH-hcCCeEEEEeccCC--chHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCce-eeee
Confidence            1223344444 56677777654433  22567888999999998875  466789999999999999876654 5554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.1e-28  Score=203.88  Aligned_cols=249  Identities=27%  Similarity=0.378  Sum_probs=210.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .|++|+|+++|++++.+++||+|+..                              |++++|++++.+.++++ |++++.
T Consensus        63 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~-p~~~~~  141 (342)
T cd08266          63 SDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPI-PDNLSF  141 (342)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeC-CCCCCH
Confidence            46789999999999999999999874                              67999999999999999 887444


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . +++.++..+.+|++++.....+.++++++|+|+++++|++++++++..|++|+.+++++++.+.++ .++.+.+++..
T Consensus       142 ~-~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~  219 (342)
T cd08266         142 E-EAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGADYVIDYR  219 (342)
T ss_pred             H-HHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCeEEecC
Confidence            4 377788889999999888888999999999999899999999999999999999999999888887 78877777776


Q ss_pred             ChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          134 EEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      .. ++...+...+.+ ++|++++++|...+...+++++++|+++.++.....     ....+....+.+++++.+.....
T Consensus       220 ~~-~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  293 (342)
T cd08266         220 KE-DFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-----EAPIDLRHVFWRQLSILGSTMGT  293 (342)
T ss_pred             Ch-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCC-----CCCcCHHHHhhcceEEEEEecCC
Confidence            65 676777776655 899999999998889999999999999999864421     11233445577888888876654


Q ss_pred             cccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                           ...+.++.+++.++.+++.+...|+++++++|++.+.++...+|+++++
T Consensus       294 -----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         294 -----KAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             -----HHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence                 5678889999999999888778899999999999999888889999863

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.97  E-value=2e-28  Score=202.72  Aligned_cols=248  Identities=26%  Similarity=0.365  Sum_probs=196.1

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      +++|+|..  +++..|++||+|+++         |++++|+.++.+.++++ |++++.. +++.++..+.+|++++....
T Consensus        63 e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~i-P~~~~~~-~aa~~~~~~~ta~~~~~~~~  138 (323)
T TIGR02823        63 DAAGTVVS--SEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPL-PEGLSLR-EAMALGTAGFTAALSVMALE  138 (323)
T ss_pred             eeEEEEEe--cCCCCCCCCCEEEEccCCCCCCCCccceEEEEEchhheEEC-CCCCCHH-HhhhhhhhHHHHHHHHHHhh
Confidence            56788777  567789999999975         79999999999999999 8885444 37788888999988875443


Q ss_pred             --CCCCCc-EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccE
Q 024411           76 --SPKHGE-CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        76 --~~~~~~-~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                        .+.+++ +++|+|++|.+|++++++|+.+|++++++++++++.+.++ ++|++.+++.++. ..  .++....+++|.
T Consensus       139 ~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~--~~~~~~~~~~d~  214 (323)
T TIGR02823       139 RNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLK-ELGASEVIDREDL-SP--PGKPLEKERWAG  214 (323)
T ss_pred             hcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-hcCCcEEEccccH-HH--HHHHhcCCCceE
Confidence              378888 9999999999999999999999999999988888889897 8999888876543 32  444444446999


Q ss_pred             EEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcC
Q 024411          153 YFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       153 v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  231 (268)
                      ++||+|+..+...+++++++|+++.+|.....     ....+...++.+++++.+...... .....+.++++.+++..+
T Consensus       215 vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (323)
T TIGR02823       215 AVDTVGGHTLANVLAQLKYGGAVAACGLAGGP-----DLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPR  289 (323)
T ss_pred             EEECccHHHHHHHHHHhCCCCEEEEEcccCCC-----CccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcC
Confidence            99999998889999999999999999875321     112233445578888888765322 222334567777788888


Q ss_pred             CceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       232 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+++. ...++++++++|++.+.+++..+|++++.
T Consensus       290 ~~~~~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       290 NLESI-TREITLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             CCcCc-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence            88765 44899999999999999999899999863

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.97  E-value=1.4e-28  Score=205.13  Aligned_cols=245  Identities=24%  Similarity=0.262  Sum_probs=196.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|.++|++++.+++||+|++.                              |+|++|+.++.+.++++ |+++  
T Consensus        63 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-P~~l--  139 (341)
T PRK05396         63 HEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKI-PDDI--  139 (341)
T ss_pred             eeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEEC-cCCC--
Confidence            46899999999999999999999873                              78999999999999999 8884  


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      ++..+++..++.++++++..  ...++++|+|+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~lg~~~~~~~  215 (341)
T PRK05396        140 PDDLAAIFDPFGNAVHTALS--FDLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVNEYRLELAR-KMGATRAVNV  215 (341)
T ss_pred             CHHHhHhhhHHHHHHHHHHc--CCCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCcEEecC
Confidence            43344455666777766533  3468999999875 9999999999999999 6888888888888888 8999989988


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      ++. ++.+.+++.+.+ ++|+++||.|+ ..+..++++++++|+++.+|....     . .......++.+++++.++..
T Consensus       216 ~~~-~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~l~~~~~  288 (341)
T PRK05396        216 AKE-DLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPG-----D-MAIDWNKVIFKGLTIKGIYG  288 (341)
T ss_pred             ccc-cHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC-----C-CcccHHHHhhcceEEEEEEc
Confidence            876 788888887766 89999999986 778999999999999999986431     1 11224566677788777643


Q ss_pred             cccccchHHHHHHHHHHHHcC-CceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          211 LDHYHLYPKFLEMIIPHIKEG-KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ..+    .+.+..+++++.++ ++.+.+...++++++++|++.+.++. .||++++|+
T Consensus       289 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        289 REM----FETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             cCc----cchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence            221    23456677888888 46566778889999999999998877 799999875

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.5e-28  Score=204.70  Aligned_cols=244  Identities=17%  Similarity=0.183  Sum_probs=194.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEE---------------------------ec---cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVW---------------------------GM---TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~---------------------------~~---g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .|++|+|+.+|++++.+++||+|+                           ++   |+|+||+.++.+.++++ |+++  
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i-p~~~--  135 (339)
T PRK10083         59 HEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRI-PDAI--  135 (339)
T ss_pred             cceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEEC-cCCC--
Confidence            367899999999999999999998                           33   78999999999999999 8884  


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHH-cCCE-EEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKL-LGCY-VVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~-~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      ++..+++..++.++++++ ...+++++++|+|+| .|++|++++|+++. +|++ ++++++++++.+.++ ++|++++++
T Consensus       136 ~~~~a~~~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~  212 (339)
T PRK10083        136 ADQYAVMVEPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK-ESGADWVIN  212 (339)
T ss_pred             CHHHHhhhchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HhCCcEEec
Confidence            434445667888888654 667899999999999 59999999999996 6995 777778888999988 899998988


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +++. .+.+.+..  .+ ++|+++|++|. ..+..++++++++|+++.+|....      ....+...+..+++++.+..
T Consensus       213 ~~~~-~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~  283 (339)
T PRK10083        213 NAQE-PLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE------PSEIVQQGITGKELSIFSSR  283 (339)
T ss_pred             Cccc-cHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CceecHHHHhhcceEEEEEe
Confidence            8765 66666643  23 57899999996 688999999999999999987432      11123334445666666543


Q ss_pred             ecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcC-CccceEEEEecC
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSG-QNVGKQVVAVAP  268 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~~~  268 (268)
                      .      ..+.++++++++.++.+++  .+..+|+++++++|++.+.++ ...+|+++++.+
T Consensus       284 ~------~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        284 L------NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             c------ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            2      2456888999999999987  367889999999999999864 456899998864

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.6e-28  Score=207.58  Aligned_cols=247  Identities=21%  Similarity=0.233  Sum_probs=197.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCC-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVP-   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~-   52 (268)
                      .+++|+|+++|++++.|++||+|++                              .|+|++|++++++.++++ |++++ 
T Consensus        93 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~l-P~~~~~  171 (384)
T cd08265          93 HEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEI-NELREI  171 (384)
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEEC-Cccccc
Confidence            3679999999999999999999985                              278999999999999999 76531 


Q ss_pred             ----chhhhhhccchHHHHHHHhhhh-cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC
Q 024411           53 ----LSYYTGILGMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        53 ----~~~~~a~l~~~~~~a~~~l~~~-~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~  126 (268)
                          +..++++++.++++||+++... ++++++++|+|+| .|++|++++|+|+..|+ +|+++++++++.+.++ ++|+
T Consensus       172 ~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~-~~g~  249 (384)
T cd08265         172 YSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAK-EMGA  249 (384)
T ss_pred             cccCCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCC
Confidence                3334677888999999999666 6899999999996 59999999999999999 7999998888888888 8999


Q ss_pred             CeeeecCCh--hhHHHHHHHHCCC-CccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhc
Q 024411          127 DEAFNYKEE--ADLNAALKRYFPE-GIDIYFENVGG--KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSK  201 (268)
Q Consensus       127 ~~v~~~~~~--~~~~~~~~~~~~~-~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  201 (268)
                      ++++++++.  .++...+++.+++ ++|+++|+.|+  ..+..++++++++|+++.+|....      ....+...+..+
T Consensus       250 ~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~  323 (384)
T cd08265         250 DYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT------TVPLHLEVLQVR  323 (384)
T ss_pred             CEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC------CCcccHHHHhhC
Confidence            888876621  1566778888877 89999999996  367899999999999999986432      112233445556


Q ss_pred             ceeeeeEEecccccchHHHHHHHHHHHHcCCceee--eehhcccccHHHHHHHHHcCCccceEEE
Q 024411          202 RLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ..++.+.....    ....++++++++.++.+++.  +.++|+++++++|++.+.++ ..+|+++
T Consensus       324 ~~~l~~~~~~~----~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         324 RAQIVGAQGHS----GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             ceEEEEeeccC----CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            66777654322    13468889999999998763  56779999999999997665 5688875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.8e-28  Score=202.47  Aligned_cols=243  Identities=26%  Similarity=0.330  Sum_probs=198.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|+.+|++++.+++||+|+++                              |+|++|++++...++++ |++++.
T Consensus        60 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~  138 (332)
T cd08259          60 HEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKL-PDNVSD  138 (332)
T ss_pred             ccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEEC-CCCCCH
Confidence            46889999999999999999999974                              68999999999999999 888554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . .++.+++++.+||+++.. +.+.++++++|+|++|++|++++++++..|++|+++++++++.+.+. +++.+.+++..
T Consensus       139 ~-~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~  215 (332)
T cd08259         139 E-SAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILK-ELGADYVIDGS  215 (332)
T ss_pred             H-HHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCcEEEecH
Confidence            4 377889999999999976 78999999999999999999999999999999999998888888887 78887666543


Q ss_pred             ChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          134 EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                         ++.+.+.+..  ++|++++++|......++++++++|+++.++.....     ...........++.++.+...   
T Consensus       216 ---~~~~~~~~~~--~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~---  282 (332)
T cd08259         216 ---KFSEDVKKLG--GADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPD-----PAPLRPGLLILKEIRIIGSIS---  282 (332)
T ss_pred             ---HHHHHHHhcc--CCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCC-----CcCCCHHHHHhCCcEEEEecC---
Confidence               3444555433  699999999998889999999999999999864321     111122233346666665532   


Q ss_pred             ccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          214 YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                        ...+.++++.+++.++.+++.+..+++++++++|++.+.+++..+|++++
T Consensus       283 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         283 --ATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             --CCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence              23667888999999999988887889999999999999998888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=2e-28  Score=206.44  Aligned_cols=251  Identities=21%  Similarity=0.194  Sum_probs=199.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe----------------------------------------ccccceeEeecCC--
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG----------------------------------------MTGWEEYSLITAP--   41 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~----------------------------------------~g~~~~~~~v~~~--   41 (268)
                      .+++|+|+++|++++.+++||+|+.                                        .|+|+||++++.+  
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  138 (375)
T cd08282          59 HEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADF  138 (375)
T ss_pred             cccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccC
Confidence            4789999999999999999999985                                        1679999999976  


Q ss_pred             cceeecCCCCCchh--hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 024411           42 HLFKIQHTDVPLSY--YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVD  118 (268)
Q Consensus        42 ~~~~~~p~~~~~~~--~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~  118 (268)
                      .++++ |++++...  .+++++.++++||+++ ..+++.++++|+|.|+ |++|++++|+++..|+ +|+++++++++.+
T Consensus       139 ~~~~l-P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~  215 (375)
T cd08282         139 NLLKL-PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYVVDHVPERLD  215 (375)
T ss_pred             cEEEC-CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            89999 88855442  2567888999999999 7788999999999875 9999999999999998 8999888999999


Q ss_pred             HHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh------------hHHhHHHhhhcCCEEEEEcccccccC
Q 024411          119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK------------LLDAVLPNMKIRGRIAACGMISQYNL  186 (268)
Q Consensus       119 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~------------~~~~~~~~l~~~G~~v~~g~~~~~~~  186 (268)
                      .++ ++|+ ..+++++. ++.+.+.+.+++++|+++||+|+.            .+..++++++++|+++.+|.......
T Consensus       216 ~~~-~~g~-~~v~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~  292 (375)
T cd08282         216 LAE-SIGA-IPIDFSDG-DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDP  292 (375)
T ss_pred             HHH-HcCC-eEeccCcc-cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCccc
Confidence            998 8998 45677665 677777776656799999999975            37899999999999988876432111


Q ss_pred             C-------CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCC
Q 024411          187 D-------KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQ  257 (268)
Q Consensus       187 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~  257 (268)
                      .       ......+...++.++..+.+....     ..+.++.+.+++.++++++  .+.+.++++++++|++.+.+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~  367 (375)
T cd08282         293 GAGDAAAKQGELSFDFGLLWAKGLSFGTGQAP-----VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL  367 (375)
T ss_pred             ccccccccCccccccHHHHHhcCcEEEEecCC-----chhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC
Confidence            0       001223445555666655543321     2567888899999999986  3778999999999999999988


Q ss_pred             ccceEEEEe
Q 024411          258 NVGKQVVAV  266 (268)
Q Consensus       258 ~~gkvvi~~  266 (268)
                       .+|+|+++
T Consensus       368 -~~kvvv~~  375 (375)
T cd08282         368 -ETKVVIKP  375 (375)
T ss_pred             -ceEEEeCC
Confidence             88999853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=1.7e-28  Score=202.70  Aligned_cols=252  Identities=28%  Similarity=0.417  Sum_probs=209.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|..+|+++..+++||+|+++   |+|++|+.++.+.++++ |++++.. .+++++.++.++++++...+.+.++
T Consensus        63 ~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~l~~~~~~a~~~~~~~~~~~~~  140 (323)
T cd05276          63 LEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQLLPV-PEGLSLV-EAAALPEVFFTAWQNLFQLGGLKAG  140 (323)
T ss_pred             ceeEEEEEeeCCCCCCCCCCCEEEEecCCCceeEEEEcCHHHhccC-CCCCCHH-HHhhchhHHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999987   79999999999999999 8884433 3778899999999999888889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++++|+|++|++|++++++++..|++|+++++++++.+.++ +++.+.+++.... ++...+.+...+ ++|+++|+.|+
T Consensus       141 ~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~g~  218 (323)
T cd05276         141 ETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALGADVAINYRTE-DFAEEVKEATGGRGVDVILDMVGG  218 (323)
T ss_pred             CEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCch-hHHHHHHHHhCCCCeEEEEECCch
Confidence            99999999999999999999999999999999988888887 8888888887765 777777776655 89999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-----ccchHHHHHHHHHHHHcCCce
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-----YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      ..+...+++++++|+++.+|..+...     ...+...++.+++++.++.....     +......++++.+++.++.++
T Consensus       219 ~~~~~~~~~~~~~g~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (323)
T cd05276         219 DYLARNLRALAPDGRLVLIGLLGGAK-----AELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIR  293 (323)
T ss_pred             HHHHHHHHhhccCCEEEEEecCCCCC-----CCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCcc
Confidence            77888999999999999998643211     12334445578888888776442     112335567788899999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.....|++++++++++.+.++...+|+++
T Consensus       294 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         294 PVIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             CCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            777778999999999999998888888874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.97  E-value=2e-28  Score=203.98  Aligned_cols=244  Identities=21%  Similarity=0.278  Sum_probs=197.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------c---cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------M---TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------~---g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|.++|+++++|++||+|++                           +   |+|++|++++.+.++++ |++++.
T Consensus        61 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-p~~~~~  139 (340)
T TIGR00692        61 HEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKN-PKSIPP  139 (340)
T ss_pred             cceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEEC-cCCCCh
Confidence            5689999999999999999999986                           2   78999999999999999 888443


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                        ..++++.++.+|++++  .....++++++|+|+ |++|++++|+++.+|++ |+++.+++++.+.++ ++|++.++++
T Consensus       140 --~~a~~~~~~~~a~~~~--~~~~~~g~~vlI~~~-g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~  213 (340)
T TIGR00692       140 --EYATIQEPLGNAVHTV--LAGPISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK-KMGATYVVNP  213 (340)
T ss_pred             --HhhhhcchHHHHHHHH--HccCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEEcc
Confidence              4566788889999987  345789999999875 99999999999999996 888877888888888 8999888888


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchH-HHHhcceeeeeEE
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLM-YLVSKRLRMEGFI  209 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  209 (268)
                      ... ++.+.+.+.+++ ++|+++||+|+ ..+...+++++++|+++.+|..... .     ..++. .++.+++++.+..
T Consensus       214 ~~~-~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~-~-----~~~~~~~~~~~~~~~~~~~  286 (340)
T TIGR00692       214 FKE-DVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGK-V-----TIDFTNKVIFKGLTIYGIT  286 (340)
T ss_pred             ccc-CHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCC-c-----ccchhhhhhhcceEEEEEe
Confidence            776 788888887766 89999999886 6788999999999999999874211 1     11122 4556677766544


Q ss_pred             ecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ..    ...+.+.++.+++.++.++  +.+...+++++++++++.+.+++. ||+|+++
T Consensus       287 ~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-gkvvv~~  340 (340)
T TIGR00692       287 GR----HMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQT-GKVILSL  340 (340)
T ss_pred             cC----CchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence            21    2235678888999999986  456778999999999999988774 9999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.97  E-value=2.9e-28  Score=203.05  Aligned_cols=240  Identities=20%  Similarity=0.261  Sum_probs=192.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-----------------------------------ccccceeEeecCCcceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-----------------------------------MTGWEEYSLITAPHLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-----------------------------------~g~~~~~~~v~~~~~~~~~p   48 (268)
                      .+++|+|+++|+++++|++||+|++                                   .|+|+||++++.+.++++ |
T Consensus        59 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i-P  137 (339)
T cd08232          59 HEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPL-P  137 (339)
T ss_pred             ccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEEC-c
Confidence            4679999999999999999999986                                   278999999999999999 9


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      +++  +.+.++++.++.+||+++.....+ ++++|||.|+ |++|++++|+|+.+|+ +++++++++++.+.++ +++.+
T Consensus       138 ~~~--~~~~aa~~~~~~~a~~~l~~~~~~-~~~~VLI~g~-g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g~~  212 (339)
T cd08232         138 DGL--SLRRAALAEPLAVALHAVNRAGDL-AGKRVLVTGA-GPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMGAD  212 (339)
T ss_pred             CCC--CHHHhhhcchHHHHHHHHHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCC
Confidence            884  434344568889999998776666 9999999875 8999999999999999 8999998888888777 88988


Q ss_pred             eeeecCChhhHHHHHHHHC-C-CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          128 EAFNYKEEADLNAALKRYF-P-EGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~-~-~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      ++++++.. .+    .+.. . +++|+++|+.|+ ..+...+++|+++|+++.+|...      .....+....+.++++
T Consensus       213 ~vi~~~~~-~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~------~~~~~~~~~~~~~~~~  281 (339)
T cd08232         213 ETVNLARD-PL----AAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLG------GPVPLPLNALVAKELD  281 (339)
T ss_pred             EEEcCCch-hh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC------CCccCcHHHHhhcceE
Confidence            88887764 42    2222 2 269999999996 67889999999999999997633      1112233344567777


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.+...      ..+.++.+++++.++.+++  .+.++++++++++|++.+.+++..||+|+++
T Consensus       282 ~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         282 LRGSFR------FDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             EEEEec------CHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            766542      2456888899999998864  3567899999999999999888899999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.7e-28  Score=203.98  Aligned_cols=242  Identities=21%  Similarity=0.236  Sum_probs=194.8

Q ss_pred             CccceEEEEecCCCC--CCCCCCeEEe---------------------------c-----cccceeEeecCC-cceeecC
Q 024411            4 ISGYGVAKVLDSENP--EFNKGDLVWG---------------------------M-----TGWEEYSLITAP-HLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~--~~~~Gd~V~~---------------------------~-----g~~~~~~~v~~~-~~~~~~p   48 (268)
                      .|++|+|.++|+.++  +|++||+|++                           +     |+|++|+.++++ .++++ |
T Consensus        68 ~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~l-P  146 (350)
T cd08256          68 HEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKV-P  146 (350)
T ss_pred             cceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEEC-C
Confidence            568999999999999  8999999986                           2     799999999988 47899 8


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++.. .++.+ .++.++|+++ ..++++++++|+|.| +|++|++++++|+.+|++ ++++++++++.+.+. ++|++
T Consensus       147 ~~~~~~-~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~  221 (350)
T cd08256         147 DDIPPE-DAILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR-KFGAD  221 (350)
T ss_pred             CCCCHH-HHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH-HcCCc
Confidence            885443 25555 8889999998 677899999999955 599999999999999985 667777888888887 89998


Q ss_pred             eeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHH-Hhccee
Q 024411          128 EAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYL-VSKRLR  204 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  204 (268)
                      .++++... ++...+.+.+++ ++|+++|++|+ ..+..++++++++|+++.+|....     . .......+ ..++++
T Consensus       222 ~v~~~~~~-~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~~  294 (350)
T cd08256         222 VVLNPPEV-DVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGD-----P-VTVDWSIIGDRKELD  294 (350)
T ss_pred             EEecCCCc-CHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCC-----C-CccChhHhhcccccE
Confidence            88888765 777888887776 89999999996 678899999999999999976321     1 11122222 245666


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCceee--eehhcccccHHHHHHHHHcCCccceEEE
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.++...      ...+.++.+++.++.+++.  +.++++++++++|++.+++++..+|+++
T Consensus       295 i~~~~~~------~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         295 VLGSHLG------PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             EEEeccC------chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            6665433      2357788999999999873  6678999999999999999888889874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.97  E-value=2.1e-28  Score=199.20  Aligned_cols=252  Identities=23%  Similarity=0.327  Sum_probs=206.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGE   81 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~   81 (268)
                      .+++|+|.++|++++.+++||+|+++  |+|+||+.++.+.++++ |++++.. +++.++++..++|.++.....+++++
T Consensus        33 ~e~~G~v~~~g~~~~~~~~Gd~V~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~g~  110 (293)
T cd05195          33 LECSGIVTRVGSGVTGLKVGDRVMGLAPGAFATHVRVDARLVVKI-PDSLSFE-EAATLPVAYLTAYYALVDLARLQKGE  110 (293)
T ss_pred             eeeeEEEEeecCCccCCCCCCEEEEEecCcccceEEechhheEeC-CCCCCHH-HHhhchHHHHHHHHHHHHHhccCCCC
Confidence            46789999999999999999999998  89999999999999999 8875444 36777899999999998888899999


Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG--FDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|+|++|++|++++++++..|++|+++++++++.+.++ ..+  ++.+++.... ++.+.+++.+++ ++|+++|++|
T Consensus       111 ~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~  188 (293)
T cd05195         111 SVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLR-ELGGPVDHIFSSRDL-SFADGILRATGGRGVDVVLNSLS  188 (293)
T ss_pred             EEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HhCCCcceEeecCch-hHHHHHHHHhCCCCceEEEeCCC
Confidence            9999999999999999999999999999999988888888 676  5677877765 788888887766 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc----ccchHHHHHHHHHHHHcCCce
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH----YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      +..+..++++++++|+++.+|.....+.    .... ...+.+++++.......+    .....+.+..+.+++.++.++
T Consensus       189 ~~~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (293)
T cd05195         189 GELLRASWRCLAPFGRFVEIGKRDILSN----SKLG-MRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK  263 (293)
T ss_pred             chHHHHHHHhcccCceEEEeeccccccC----Cccc-hhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc
Confidence            9888999999999999999986432110    0111 122445666666554332    122345678888999999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.....+++++++++++.+.+++..+|+++
T Consensus       264 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         264 PLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             cCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            877778899999999999998888888874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.97  E-value=5e-28  Score=203.63  Aligned_cols=251  Identities=18%  Similarity=0.200  Sum_probs=196.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      .|++|+|+++|++++.+++||+|+..                                                   |+|
T Consensus        66 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  145 (373)
T cd08299          66 HEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTF  145 (373)
T ss_pred             ccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcc
Confidence            57899999999999999999999753                                                   689


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++.+.++++ |++++.. +++.+.+++.+||+++...++++++++++|+|+ |++|++++++++..|+ +|++++
T Consensus       146 ~e~~~v~~~~~~~l-P~~l~~~-~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~  222 (373)
T cd08299         146 SEYTVVDEIAVAKI-DAAAPLE-KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVD  222 (373)
T ss_pred             cceEEecccceeeC-CCCCChH-HhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999 8885444 377788899999999877788999999999975 9999999999999999 899999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCh-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhh-hcCCEEEEEcccccccCCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNM-KIRGRIAACGMISQYNLDK  188 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~  188 (268)
                      +++++.+.++ ++|++++++..+. .++...+.+.+++++|+++||+|+ ..+..++..+ +++|+++.+|.....    
T Consensus       223 ~~~~~~~~a~-~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~----  297 (373)
T cd08299         223 INKDKFAKAK-ELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS----  297 (373)
T ss_pred             CCHHHHHHHH-HcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCC----
Confidence            9999999998 8999888877643 036666776665689999999996 6677766655 579999999874321    


Q ss_pred             CccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          189 PEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ........ .+.++.++.++....+.  ..+.+.++++.+.++.++  +.+.++|+++++++|++.+.+++. .|+++++
T Consensus       298 ~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         298 QNLSINPM-LLLTGRTWKGAVFGGWK--SKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             ceeecCHH-HHhcCCeEEEEEecCCc--cHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            11122222 24467788887665432  134555666667666543  456788999999999999987664 4777753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>smart00829 PKS_ER Enoylreductase

Probab=99.97  E-value=2.3e-28  Score=198.69  Aligned_cols=252  Identities=22%  Similarity=0.314  Sum_probs=204.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGE   81 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~   81 (268)
                      .+++|.|.++|++++.+++||+|+++  |+|++|+.++.+.++++ |++++.. .++++++++.++++++.....+.+++
T Consensus        29 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~g~  106 (288)
T smart00829       29 GECAGVVTRVGPGVTGLAVGDRVMGLAPGSFATYVRTDARLVVPI-PDGLSFE-EAATVPVVFLTAYYALVDLARLRPGE  106 (288)
T ss_pred             ceeEEEEEeeCCCCcCCCCCCEEEEEcCCceeeEEEccHHHeEEC-CCCCCHH-HHHhchHHHHHHHHHHHHHhCCCCCC
Confidence            57799999999999999999999997  89999999999999999 8885444 37788889999999987778899999


Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--DEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|+|++|++|++++++++..|++|+++++++++.+.++ ++|.  +.++++... ++.+.+...+++ ++|+++|+++
T Consensus       107 ~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~  184 (288)
T smart00829      107 SVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLR-ELGIPDDHIFSSRDL-SFADEILRATGGRGVDVVLNSLA  184 (288)
T ss_pred             EEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCChhheeeCCCc-cHHHHHHHHhCCCCcEEEEeCCC
Confidence            9999999999999999999999999999999999999997 8998  677877765 677778777766 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc---ccchHHHHHHHHHHHHcCCcee
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      +..+...+++++++|+++.+|.....    .....+... +.+++++.+......   +....+.+.++.+++.++.+++
T Consensus       185 ~~~~~~~~~~l~~~g~~v~~g~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T smart00829      185 GEFLDASLRCLAPGGRFVEIGKRDIR----DNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRP  259 (288)
T ss_pred             HHHHHHHHHhccCCcEEEEEcCcCCc----cccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccC
Confidence            88888899999999999999864311    011112222 455666666554221   1123445777888999998877


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ...+.+++++++++++.+..++..+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      260 LPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             cCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            65677899999999999998877788764

Enoylreductase in Polyketide synthases.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=7.2e-28  Score=199.44  Aligned_cols=254  Identities=26%  Similarity=0.340  Sum_probs=211.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      .+++|+|..+|+++..+++||+|+++        |++++|+.++.+.++++ |++++.. .++.+++++.+||+++....
T Consensus        63 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~~~~~~  140 (328)
T cd08268          63 YEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKL-PDGLSFV-EAAALWMQYLTAYGALVELA  140 (328)
T ss_pred             cceEEEEEeeCCCCCcCCCCCEEEeccccccCCCccceEEEEechHhcEeC-CCCCCHH-HHHHhhhHHHHHHHHHHHhc
Confidence            46799999999999999999999876        78999999999999999 8884433 37788999999999998888


Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                      .+.++++++|+|++|++|++++++++..|++++.+++++++.+.++ ++|.+.+++.+.. .+...+.+.+.+ ++|+++
T Consensus       141 ~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi  218 (328)
T cd08268         141 GLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL-ALGAAHVIVTDEE-DLVAEVLRITGGKGVDVVF  218 (328)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEecCCc-cHHHHHHHHhCCCCceEEE
Confidence            8999999999999999999999999999999999999999999887 8888778887765 777777777666 899999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc---ccchHHHHHHHHHHHHcC
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH---YHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g  231 (268)
                      +++++.....++++++++|+++.+|....     .....+....+.+++++.+......   +......++.+.+++.++
T Consensus       219 ~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (328)
T cd08268         219 DPVGGPQFAKLADALAPGGTLVVYGALSG-----EPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASG  293 (328)
T ss_pred             ECCchHhHHHHHHhhccCCEEEEEEeCCC-----CCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCC
Confidence            99999888899999999999999976432     1112333345788888888775432   223345667777788889


Q ss_pred             CceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       232 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+.+.....+++++++++++.+.+++..+|+++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         294 ALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             CCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            88877777889999999999999888888999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=4.7e-28  Score=202.23  Aligned_cols=245  Identities=19%  Similarity=0.217  Sum_probs=199.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-c-----------------------------cccceeEeecCC--cceeecCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-M-----------------------------TGWEEYSLITAP--HLFKIQHTDV   51 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-~-----------------------------g~~~~~~~v~~~--~~~~~~p~~~   51 (268)
                      .|++|+|+++|++++.+++||+|++ +                             |+|+||++++.+  .++++ |+++
T Consensus        59 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l-P~~l  137 (345)
T cd08287          59 HEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKV-PGSP  137 (345)
T ss_pred             cceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEEC-CCCC
Confidence            4789999999999999999999986 1                             788999999975  79999 8885


Q ss_pred             Cchhh----hhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCC
Q 024411           52 PLSYY----TGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        52 ~~~~~----~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~  126 (268)
                      +....    .+++...+.+||+++. .+.+.++++++|.| +|++|++++|+|+..|++ ++++++++++.+.++ ++|+
T Consensus       138 ~~~~~~~~~~~~l~~~~~~a~~~~~-~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~ga  214 (345)
T cd08287         138 SDDEDLLPSLLALSDVMGTGHHAAV-SAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR-EFGA  214 (345)
T ss_pred             ChhhhhhhhhHhhhcHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCC
Confidence            54111    1244577899999984 67899999999977 599999999999999995 778887877888888 8999


Q ss_pred             CeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          127 DEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      +++++++.. .+.+.+.+.+++ ++|+++|++|+ ..+..++++++++|+++.+|....      ....+....+.++++
T Consensus       215 ~~v~~~~~~-~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~  287 (345)
T cd08287         215 TDIVAERGE-EAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG------GVELDVRELFFRNVG  287 (345)
T ss_pred             ceEecCCcc-cHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC------CCccCHHHHHhcceE
Confidence            999998876 778888887776 89999999986 788999999999999999876431      122334466788888


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+.....     .+.++++++++.++.+++  .+...++++++++|++.+.+++.. |++|+
T Consensus       288 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~  344 (345)
T cd08287         288 LAGGPAPV-----RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAI-KVLLR  344 (345)
T ss_pred             EEEecCCc-----HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCce-EEEeC
Confidence            87743322     567899999999999886  356788999999999998876654 99885

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=5.3e-28  Score=201.22  Aligned_cols=249  Identities=22%  Similarity=0.242  Sum_probs=202.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .+++|+|..+|++++.+++||+|+.+      |+|++|+.++.+.++++ |++++.. .++.++....+||+++...+.+
T Consensus        65 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~~~~~~~~~~ta~~~l~~~~~~  142 (336)
T cd08252          65 WDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHK-PKSLSFA-EAAALPLTSLTAWEALFDRLGI  142 (336)
T ss_pred             cceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeC-CCCCCHH-HhhhhhhHHHHHHHHHHHhcCC
Confidence            46789999999999999999999986      78999999999999999 8875444 3678899999999998777888


Q ss_pred             CC-----CcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 KH-----GECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~-----~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+     +++++|+|++|++|++++++++.+| ++|+++++++++.+.++ ++|++++++...  ++...+....++++|
T Consensus       143 ~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~i~~~~~~~~d  219 (336)
T cd08252         143 SEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK-ELGADHVINHHQ--DLAEQLEALGIEPVD  219 (336)
T ss_pred             CCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH-hcCCcEEEeCCc--cHHHHHHhhCCCCCC
Confidence            77     9999999998999999999999999 89999999999999997 899988887764  555666644334899


Q ss_pred             EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-----cc--chHHHHHH
Q 024411          152 IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-----YH--LYPKFLEM  223 (268)
Q Consensus       152 ~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~  223 (268)
                      +++|++|+ ..+..++++++++|+++.+|...        ...+...++.+++++.+......     +.  ...+.+++
T Consensus       220 ~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (336)
T cd08252         220 YIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--------EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNE  291 (336)
T ss_pred             EEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--------CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHH
Confidence            99999996 78899999999999999997631        11222333467788777654321     11  23456888


Q ss_pred             HHHHHHcCCceeeee---hhcccccHHHHHHHHHcCCccceEEEE
Q 024411          224 IIPHIKEGKLVYVED---MAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       224 ~~~~~~~g~l~~~~~---~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.+++.++.+++...   ..++++++++|++.+.++...+|++++
T Consensus       292 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         292 VADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             HHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            999999999987533   347899999999999998888998863

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=8.3e-28  Score=198.82  Aligned_cols=254  Identities=26%  Similarity=0.385  Sum_probs=211.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|.|..+|+++..+++||+|+++   |+|++|++++.+.++++ |++++.. .+++++.++.++|+++.....+.++
T Consensus        63 ~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~i-p~~~~~~-~~~~~~~~~~ta~~~~~~~~~~~~~  140 (325)
T TIGR02824        63 LEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPV-PEGLSLV-EAAALPETFFTVWSNLFQRGGLKAG  140 (325)
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEccCCCcceeEEEecHHHcEeC-CCCCCHH-HHHhhhHHHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999986   79999999999999999 8884443 3778899999999998888899999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++++|+|++|++|++++++++..|++|+++++++++.+.++ ++|.+.+++.... ++...+....++ ++|++++++|+
T Consensus       141 ~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~  218 (325)
T TIGR02824       141 ETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACE-ALGADIAINYREE-DFVEVVKAETGGKGVDVILDIVGG  218 (325)
T ss_pred             CEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCch-hHHHHHHHHcCCCCeEEEEECCch
Confidence            99999999999999999999999999999999998888887 8888777777665 677778777765 89999999998


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-c----cchHHHHHHHHHHHHcCCce
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-Y----HLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~l~  234 (268)
                      .....++++++++|+++.+|......     ...+...++.+++++.+...... .    ......+.++.+++.++.++
T Consensus       219 ~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  293 (325)
T TIGR02824       219 SYLNRNIKALALDGRIVQIGFQGGRK-----AELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVR  293 (325)
T ss_pred             HHHHHHHHhhccCcEEEEEecCCCCc-----CCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCccc
Confidence            88889999999999999998743211     12334445588999998876442 1    12334567788899999988


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.....+++++++++++.+.++...+|+++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       294 PVIDKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             CccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence            77777889999999999999888889999863

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05281 TDH Threonine dehydrogenase

Probab=99.97  E-value=7.1e-28  Score=200.80  Aligned_cols=244  Identities=23%  Similarity=0.270  Sum_probs=195.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|+.+|++++.+++||+|+++                              |+|++|++++.+.++++ |+++  
T Consensus        63 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~l-P~~~--  139 (341)
T cd05281          63 HEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKN-DKDI--  139 (341)
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEEC-cCCC--
Confidence            46789999999999999999999873                              78999999999999999 8884  


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      +.++++++.++.++++++.  ....++++|+|+|+ |++|++++|+++..|+ +|+++++++++.+.++ ++|.++++++
T Consensus       140 ~~~~a~~~~~~~~a~~~~~--~~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~  215 (341)
T cd05281         140 PPEIASIQEPLGNAVHTVL--AGDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPNPYRLELAK-KMGADVVINP  215 (341)
T ss_pred             CHHHhhhhhHHHHHHHHHH--hcCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCcceeeCc
Confidence            4345677788889998874  35678999999875 9999999999999999 7988888888888888 8999888877


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      +.. ++. .+.+.+++ ++|+++||+|+ .....++++++++|+++.+|....     ..........+.++..+.++..
T Consensus       216 ~~~-~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~  288 (341)
T cd05281         216 REE-DVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPG-----PVDIDLNNLVIFKGLTVQGITG  288 (341)
T ss_pred             ccc-cHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC-----CcccccchhhhccceEEEEEec
Confidence            765 677 77777776 99999999987 678899999999999999876432     1000111234556777766542


Q ss_pred             cccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ..    ..+.++++.+++.++.+.  +.+.+.++++++++|++.+.+++ .||+|+++
T Consensus       289 ~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         289 RK----MFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             CC----cchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence            21    234567888999999876  44556789999999999999988 89999863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=8.2e-28  Score=199.19  Aligned_cols=235  Identities=28%  Similarity=0.342  Sum_probs=189.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -+++|+|+++|++++.+++||+|+.+                              |+|++|++++.+.++++ |++++.
T Consensus        60 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-p~~~~~  138 (325)
T cd08264          60 AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKI-PDSISD  138 (325)
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeC-CCCCCH
Confidence            36789999999999999999999853                              78999999999999999 888554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . +++.+++++.+||+++.. .+++++++++|+|++|++|++++++|+.+|++|+++++    .+.++ ++|++++++..
T Consensus       139 ~-~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~-~~g~~~~~~~~  211 (325)
T cd08264         139 E-LAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLK-EFGADEVVDYD  211 (325)
T ss_pred             H-HhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHH-HhCCCeeecch
Confidence            4 477888899999999865 78999999999999999999999999999999988873    25666 78988888764


Q ss_pred             ChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          134 EEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                      .   ..+.+++.+ +++|+++|++|+..+..++++++++|+++.+|....     .....+...++.++.++.+...+. 
T Consensus       212 ~---~~~~l~~~~-~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-  281 (325)
T cd08264         212 E---VEEKVKEIT-KMADVVINSLGSSFWDLSLSVLGRGGRLVTFGTLTG-----GEVKLDLSDLYSKQISIIGSTGGT-  281 (325)
T ss_pred             H---HHHHHHHHh-CCCCEEEECCCHHHHHHHHHhhccCCEEEEEecCCC-----CCCccCHHHHhhcCcEEEEccCCC-
Confidence            2   344566555 679999999999888999999999999999986321     112344556666777777765443 


Q ss_pred             ccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceE
Q 024411          214 YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQ  262 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  262 (268)
                          ++.++++++++....  ..+...|+++++++|++.+.+++..+|+
T Consensus       282 ----~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         282 ----RKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             ----HHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence                567888888886443  4466789999999999999988777775

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.96  E-value=1.4e-27  Score=199.89  Aligned_cols=257  Identities=22%  Similarity=0.216  Sum_probs=191.6

Q ss_pred             CccceEEEEecCCCC-CCCCCCeEEec--------cccceeEeecCC----cceeecCCCCCchhhhhhccchHHHHHHH
Q 024411            4 ISGYGVAKVLDSENP-EFNKGDLVWGM--------TGWEEYSLITAP----HLFKIQHTDVPLSYYTGILGMPGMTAYVG   70 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~-~~~~Gd~V~~~--------g~~~~~~~v~~~----~~~~~~p~~~~~~~~~a~l~~~~~~a~~~   70 (268)
                      .|++|+|.++|++++ .|++||+|+++        |+|++|++++..    .++++ |++++.. +++.++....+||++
T Consensus        64 ~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~l-P~~l~~~-~aa~~~~~~~ta~~~  141 (352)
T cd08247          64 RDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRK-PENISLE-EAAAWPLVLGTAYQI  141 (352)
T ss_pred             ceeEEEEEEeCcccccCCCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEEC-CCCCCHH-HHHHhHHHHHHHHHH
Confidence            467999999999998 89999999975        789999999998    68999 8885544 377888999999999


Q ss_pred             hhhhc-CCCCCcEEEEecCcchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhh---HHHHHHH
Q 024411           71 FYEVC-SPKHGECVFISAASGAVGQLVGQFAKLL-GC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD---LNAALKR  144 (268)
Q Consensus        71 l~~~~-~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~  144 (268)
                      +...+ .++++++++|+|+++++|++++++|+.. +. .++.+. ++++.+.++ ++|++.+++.++. +   +...+.+
T Consensus       142 l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~-~~g~~~~i~~~~~-~~~~~~~~~~~  218 (352)
T cd08247         142 LEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNK-KLGADHFIDYDAH-SGVKLLKPVLE  218 (352)
T ss_pred             HHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHH-HhCCCEEEecCCC-cccchHHHHHH
Confidence            97777 7999999999999999999999999987 55 677766 566666776 8999888887664 4   4444444


Q ss_pred             -HCCC-CccEEEeCCCh-hhHHhHHHhhh---cCCEEEEEcccccccCCC-C-----ccccchHHHHhcceeeeeEEecc
Q 024411          145 -YFPE-GIDIYFENVGG-KLLDAVLPNMK---IRGRIAACGMISQYNLDK-P-----EGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       145 -~~~~-~~d~v~d~~g~-~~~~~~~~~l~---~~G~~v~~g~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                       .+++ ++|+++||+|+ .....++++++   ++|+++.++...+.+... .     ..... ...+.+++++.......
T Consensus       219 ~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  297 (352)
T cd08247         219 NVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSAN-ARKLFGSLGLWSYNYQF  297 (352)
T ss_pred             hhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchh-hhhhhhhhcCCCcceEE
Confidence             4424 89999999998 67889999999   999999874321110000 0     00000 11122333222222111


Q ss_pred             c-ccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          213 H-YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       213 ~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      . .....+.++++.+++.++.+++.+.+.++++++++|++.+++++..||+++++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         298 FLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             EEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            0 11114678889999999999887778899999999999999988899999863

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.96  E-value=3.8e-27  Score=198.06  Aligned_cols=243  Identities=19%  Similarity=0.227  Sum_probs=190.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|+++++|++||+|++                               .|+|+||++++.+.++++ |++++
T Consensus        79 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~-P~~l~  157 (364)
T PLN02702         79 HECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKL-PENVS  157 (364)
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEEC-CCCCC
Confidence            4789999999999999999999986                               278999999999999999 88844


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .  ..+++..+..++++++ ...++.++++++|+|+ |++|++++|+++..|++ ++++++++++.+.++ ++|++.+++
T Consensus       158 ~--~~aa~~~~~~~a~~~~-~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~  232 (364)
T PLN02702        158 L--EEGAMCEPLSVGVHAC-RRANIGPETNVLVMGA-GPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK-QLGADEIVL  232 (364)
T ss_pred             H--HHHhhhhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEe
Confidence            3  3333334566688887 6678999999999974 99999999999999995 777777888888888 899987765


Q ss_pred             cC--ChhhHHHHHHHH---CCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          132 YK--EEADLNAALKRY---FPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       132 ~~--~~~~~~~~~~~~---~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      ++  .. ++.+.+...   .++++|+++|++|+ ..+..++++++++|+++.+|...+      ...........+++++
T Consensus       233 ~~~~~~-~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i  305 (364)
T PLN02702        233 VSTNIE-DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN------EMTVPLTPAAAREVDV  305 (364)
T ss_pred             cCcccc-cHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CCcccHHHHHhCccEE
Confidence            43  23 555555543   23489999999995 788999999999999999986421      1122344566778888


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCCce--eeeehhccc--ccHHHHHHHHHcCCccceEEEE
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGL--ESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~--~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .++...      ...++.+++++.++.+.  +.+...|++  +++++|++.+.+++..+|+++.
T Consensus       306 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        306 VGVFRY------RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             EEeccC------hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            776542      24678889999999875  445567555  7999999999988888899985

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=4.1e-27  Score=194.85  Aligned_cols=248  Identities=27%  Similarity=0.366  Sum_probs=204.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      .+++|+|.++|+++..|++||+|+++        |+|++|+.++.+.++++ |++++.. .++.++..+.+||+++....
T Consensus        63 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~l~~~~  140 (326)
T cd08272          63 CDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALK-PANLSMR-EAAALPLVGITAWEGLVDRA  140 (326)
T ss_pred             cceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccC-CCCCCHH-HHHHhHHHHHHHHHHHHHhc
Confidence            46789999999999999999999985        68999999999999999 8884443 36778889999999988888


Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                      ++.++++++|+|++|++|++++++++..|++|+.++++ ++.+.++ ++|.+.+++...  .+...+...+++ ++|.++
T Consensus       141 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~d~v~  216 (326)
T cd08272         141 AVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-SLGADPIIYYRE--TVVEYVAEHTGGRGFDVVF  216 (326)
T ss_pred             CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHH-HcCCCEEEecch--hHHHHHHHhcCCCCCcEEE
Confidence            99999999999999999999999999999999999977 8888887 899887777654  366777777766 899999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc--c----ccchHHHHHHHHHHH
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD--H----YHLYPKFLEMIIPHI  228 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~  228 (268)
                      ||.++......+++++++|+++.++...         .........+++++.+.....  .    +....+.++.+.+++
T Consensus       217 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (326)
T cd08272         217 DTVGGETLDASFEAVALYGRVVSILGGA---------THDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLV  287 (326)
T ss_pred             ECCChHHHHHHHHHhccCCEEEEEecCC---------ccchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHH
Confidence            9999988888999999999999987632         011112235677777766432  1    223456788889999


Q ss_pred             HcCCceeeee-hhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          229 KEGKLVYVED-MAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       229 ~~g~l~~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++.+++.+. ..+++++++++++.+.+++..+|+++++
T Consensus       288 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         288 ERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             HCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            9999987755 7899999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=4e-27  Score=195.83  Aligned_cols=242  Identities=26%  Similarity=0.357  Sum_probs=193.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .+++|+|+.+|++++.+++||+|+.                              .|+|++|++++.+.++++ |++++.
T Consensus        58 ~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-P~~~~~  136 (334)
T cd08234          58 HEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKI-PDNLSF  136 (334)
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEEC-cCCCCH
Confidence            4688999999999999999999986                              278999999999999999 988554


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      . .++. ..++.++++++ ..+++.++++++|+|+ |.+|++++++|+..|++ |+++++++++.+.++ ++|.+.++++
T Consensus       137 ~-~aa~-~~~~~~a~~~l-~~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~  211 (334)
T cd08234         137 E-EAAL-AEPLSCAVHGL-DLLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATETVDP  211 (334)
T ss_pred             H-HHhh-hhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCeEEecC
Confidence            4 2443 47788999998 7788999999999975 99999999999999997 888988999999987 8898888877


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      ... ++... +...++++|+++||+|. ..+..++++++++|+++.+|.....    .....+...++.+++++.+....
T Consensus       212 ~~~-~~~~~-~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  285 (334)
T cd08234         212 SRE-DPEAQ-KEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPD----ARVSISPFEIFQKELTIIGSFIN  285 (334)
T ss_pred             CCC-CHHHH-HHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCC----CCcccCHHHHHhCCcEEEEeccC
Confidence            764 55444 33333489999999985 7788999999999999999874321    11122333444577777765432


Q ss_pred             ccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                            .+.++++.+++.++.+++  .+..++++++++++++.+.+ ...+|+|+
T Consensus       286 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         286 ------PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             ------HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence                  456888999999999874  35678899999999999998 77889886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=217.64  Aligned_cols=238  Identities=21%  Similarity=0.269  Sum_probs=205.5

Q ss_pred             CCCCCeEEec---cccceeEeecCCcceeecCCCCCchhh-hhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHH
Q 024411           20 FNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYY-TGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQL   95 (268)
Q Consensus        20 ~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~-~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~   95 (268)
                      .+-|.||+++   -++++.+.++.+.+|.+ |++  +..+ +++.|+.+.|||+||...+.+++|++||||+++||+|++
T Consensus      1492 d~~GrRvM~mvpAksLATt~l~~rd~lWev-P~~--WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQA 1568 (2376)
T KOG1202|consen 1492 DASGRRVMGMVPAKSLATTVLASRDFLWEV-PSK--WTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQA 1568 (2376)
T ss_pred             cCCCcEEEEeeehhhhhhhhhcchhhhhhC-Ccc--cchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHH
Confidence            5778999998   58999999999999999 988  7766 779999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---CeeeecCChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhc
Q 024411           96 VGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---DEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKI  171 (268)
Q Consensus        96 ~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~  171 (268)
                      +|.+|..+|++|+.+..|.++.+++.+.+.-   .+.-|.++. +|...+.+.+.| |+|+|++....+.++..++||+.
T Consensus      1569 AIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdt-sFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~ 1647 (2376)
T KOG1202|consen 1569 AIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDT-SFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLAL 1647 (2376)
T ss_pred             HHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccc-cHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHh
Confidence            9999999999999999999999998854432   345677777 999999999998 99999999999999999999999


Q ss_pred             CCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHH----HcCCceeeeehhcccccHH
Q 024411          172 RGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHI----KEGKLVYVEDMAEGLESAP  247 (268)
Q Consensus       172 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~~~~~~~~~~~~  247 (268)
                      +||+..+|..+   .  ..........|.+|.+++|.-+.++++-..+..+++..++    ++|.++|+.+.+|+-.+++
T Consensus      1648 ~GRFLEIGKfD---L--SqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE 1722 (2376)
T KOG1202|consen 1648 HGRFLEIGKFD---L--SQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVE 1722 (2376)
T ss_pred             cCeeeeeccee---c--ccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHH
Confidence            99999998743   1  1112334667889999999998887554455555555555    5568899999999999999


Q ss_pred             HHHHHHHcCCccceEEEEe
Q 024411          248 AALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       248 ~a~~~~~~~~~~gkvvi~~  266 (268)
                      +||++|.+++..||+|+++
T Consensus      1723 ~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1723 DAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred             HHHHHHhccCccceEEEEE
Confidence            9999999999999999986

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.8e-27  Score=196.51  Aligned_cols=251  Identities=24%  Similarity=0.269  Sum_probs=194.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|+.+|++++.|++||+|+++   |+|++|+.++.+.++++ |++++.. ++++++++..+||+++...+.+.++
T Consensus        63 ~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~a~~~~~~~~ta~~~l~~~~~~~~g  140 (331)
T cd08273          63 YDLVGRVDALGSGVTGFEVGDRVAALTRVGGNAEYINLDAKYLVPV-PEGVDAA-EAVCLVLNYVTAYQMLHRAAKVLTG  140 (331)
T ss_pred             cceEEEEEEeCCCCccCCCCCEEEEeCCCcceeeEEEechHHeEEC-CCCCCHH-HHHhhhhHHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999996   89999999999999999 8885544 3678999999999999887889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      ++++|+|++|++|++++++++..|++|+.+++ +++.+.++ ++|+. .++.... ++...  ....+++|+++||+|+.
T Consensus       141 ~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~-~~g~~-~~~~~~~-~~~~~--~~~~~~~d~vl~~~~~~  214 (331)
T cd08273         141 QRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALR-ELGAT-PIDYRTK-DWLPA--MLTPGGVDVVFDGVGGE  214 (331)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHH-HcCCe-EEcCCCc-chhhh--hccCCCceEEEECCchH
Confidence            99999999999999999999999999999997 88888887 78864 3444443 44433  23334899999999997


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCCccccch------------HHHHhcceeeeeEEeccc--ccchHHHHHHHHH
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------------MYLVSKRLRMEGFIVLDH--YHLYPKFLEMIIP  226 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  226 (268)
                      ....++++++++|+++.+|........  ....+.            .....+++++........  +....+.++++++
T Consensus       215 ~~~~~~~~l~~~g~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  292 (331)
T cd08273         215 SYEESYAALAPGGTLVCYGGNSSLLQG--RRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLD  292 (331)
T ss_pred             HHHHHHHHhcCCCEEEEEccCCCCCCc--cccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHH
Confidence            789999999999999999874421110  000000            011122333333222110  2234567889999


Q ss_pred             HHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          227 HIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       227 ~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      ++.++.+++.+..++++++++++++.+.++...||+|+
T Consensus       293 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         293 LLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             HHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            99999998877778999999999999998888889885

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.96  E-value=2.6e-27  Score=191.88  Aligned_cols=240  Identities=25%  Similarity=0.256  Sum_probs=188.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEE
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECV   83 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~v   83 (268)
                      .|++|+|.++|++++++++||+|+++++|++|++++.+.++++ |++++.. +++.+ +++.+||+++. .+++++++++
T Consensus        26 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~v~~~~~~~i-p~~l~~~-~aa~~-~~~~ta~~~~~-~~~~~~g~~v  101 (277)
T cd08255          26 YSSVGRVVEVGSGVTGFKPGDRVFCFGPHAERVVVPANLLVPL-PDGLPPE-RAALT-ALAATALNGVR-DAEPRLGERV  101 (277)
T ss_pred             cceeEEEEEeCCCCCCCCCCCEEEecCCcceEEEcCHHHeeEC-cCCCCHH-HhHHH-HHHHHHHHHHH-hcCCCCCCEE
Confidence            5778999999999999999999999999999999999999999 8885443 35555 78999999985 6789999999


Q ss_pred             EEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcC-CCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           84 FISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFG-FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        84 lI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|+|+ |++|++++++|+.+|++ |+++++++++.+.++ ++| .+.+++....  .      ..++++|+++|+++. .
T Consensus       102 lI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~------~~~~~~d~vl~~~~~~~  171 (277)
T cd08255         102 AVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAE-ALGPADPVAADTAD--E------IGGRGADVVIEASGSPS  171 (277)
T ss_pred             EEECC-CHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH-HcCCCccccccchh--h------hcCCCCCEEEEccCChH
Confidence            99975 99999999999999998 999999999999888 888 4444433221  1      122379999999886 7


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc-------cchHHHHHHHHHHHHcCCc
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-------HLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~l  233 (268)
                      .+...+++++++|+++.+|.....      .......+..+.+++.+.......       ....+.++++++++.++.+
T Consensus       172 ~~~~~~~~l~~~g~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  245 (277)
T cd08255         172 ALETALRLLRDRGRVVLVGWYGLK------PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRL  245 (277)
T ss_pred             HHHHHHHHhcCCcEEEEEeccCCC------ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCc
Confidence            788999999999999999874321      111112334455677766654321       1123678899999999999


Q ss_pred             eeeeehhcccccHHHHHHHHHcC-CccceEE
Q 024411          234 VYVEDMAEGLESAPAALIGLFSG-QNVGKQV  263 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvv  263 (268)
                      ++.+.+.++++++++|++.+.++ ....|++
T Consensus       246 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~  276 (277)
T cd08255         246 EALITHRVPFEDAPEAYRLLFEDPPECLKVV  276 (277)
T ss_pred             cccccCccCHHHHHHHHHHHHcCCccceeee
Confidence            88877889999999999999876 3445665

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.96  E-value=8.7e-27  Score=192.96  Aligned_cols=249  Identities=22%  Similarity=0.286  Sum_probs=196.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhh-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYE-   73 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~-   73 (268)
                      .+++|+|.+  ++++++++||+|+++         |+|++|++++.+.++++ |++++.. +++.++..+++|+.++.. 
T Consensus        63 ~e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-p~~~~~~-~~~~~~~~~~ta~~~~~~~  138 (324)
T cd08288          63 IDLAGTVVE--SSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPL-PEGLSAR-QAMAIGTAGFTAMLCVMAL  138 (324)
T ss_pred             cceEEEEEe--CCCCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeC-CCCCCHH-HHhhhhhHHHHHHHHHHHH
Confidence            356788877  777889999999983         78999999999999999 8885443 377888888898877641 


Q ss_pred             -hcCCC-CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           74 -VCSPK-HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        74 -~~~~~-~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                       ..... ++++++|+|++|++|++++|+|+.+|++|++++.++++.+.++ ++|+++++++.+. .  ..++...++++|
T Consensus       139 ~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~-~--~~~~~~~~~~~~  214 (324)
T cd08288         139 EDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLR-SLGASEIIDRAEL-S--EPGRPLQKERWA  214 (324)
T ss_pred             hhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCEEEEcchh-h--HhhhhhccCccc
Confidence             12344 6789999999999999999999999999999999999999997 8999888887643 2  245555555789


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  230 (268)
                      .++|++++..+...+..++.+|+++.+|...+.     ....+...++.+++++.+...... .....+.++.+.+++.+
T Consensus       215 ~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (324)
T cd08288         215 GAVDTVGGHTLANVLAQTRYGGAVAACGLAGGA-----DLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDP  289 (324)
T ss_pred             EEEECCcHHHHHHHHHHhcCCCEEEEEEecCCC-----CCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhc
Confidence            999999987777888889999999999874221     111233444578899988764332 22345677888888889


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.+.+. ...++++++++|++.+.+++..+|+++++
T Consensus       290 ~~~~~i-~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         290 ALLEAL-TREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             CCcccc-ceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            988764 57889999999999999999999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=6.2e-27  Score=193.38  Aligned_cols=253  Identities=26%  Similarity=0.354  Sum_probs=210.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|.|..+|+++..+++||+|+++   |++++|+.++.+.++++ |++++.. +++.+..+..+|++++.....+.++
T Consensus        63 ~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~i-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~  140 (323)
T cd08241          63 SEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAAVFPL-PDGLSFE-EAAALPVTYGTAYHALVRRARLQPG  140 (323)
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEecCCceeEEEEEcCHHHceeC-CCCCCHH-HHhhhhhHHHHHHHHHHHhcCCCCC
Confidence            36789999999999999999999996   68999999999999999 8885444 3667888999999999877889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++++|+|++|++|++++++++..|++|+.+++++++.+.++ ++|...+++.... ++...+...+++ ++|.++||+|+
T Consensus       141 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~~~~~d~v~~~~g~  218 (323)
T cd08241         141 ETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALGADHVIDYRDP-DLRERVKALTGGRGVDVVYDPVGG  218 (323)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HcCCceeeecCCc-cHHHHHHHHcCCCCcEEEEECccH
Confidence            99999999999999999999999999999999999999888 8888777877765 777788887776 89999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc----cchHHHHHHHHHHHHcCCcee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY----HLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      ..+..++++++++|+++.+|.....     .........+.+++++.+.....+.    ....+.++++.+++.++.+++
T Consensus       219 ~~~~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (323)
T cd08241         219 DVFEASLRSLAWGGRLLVIGFASGE-----IPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRP  293 (323)
T ss_pred             HHHHHHHHhhccCCEEEEEccCCCC-----cCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCccc
Confidence            8888999999999999999863311     1112223456688888887654432    123467788899999999987


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      .....|++++++++++.+.++...+|++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         294 HVSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             ccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence            777789999999999999988878888863

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.3e-26  Score=190.38  Aligned_cols=249  Identities=22%  Similarity=0.334  Sum_probs=202.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .+++|.|+.+|+++..+++||+|+++      |+|++|+.++.+.++++ |++++.. .++.+.+++.+|++++...+.+
T Consensus        62 ~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~i-p~~~~~~-~~a~~~~~~~~a~~~~~~~~~~  139 (325)
T cd08271          62 VDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPL-PDSLSFE-EAAALPCAGLTAYQALFKKLRI  139 (325)
T ss_pred             cceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEEC-CCCCCHH-HHHhhhhhHHHHHHHHHHhcCC
Confidence            46789999999999999999999985      68999999999999999 8885444 3778899999999999888889


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      .++++++|+|++|++|++++++++..|++|+++. ++++.+.+. .+|++.+++.... .+...+....++ ++|++++|
T Consensus       140 ~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~  216 (325)
T cd08271         140 EAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVK-SLGADHVIDYNDE-DVCERIKEITGGRGVDAVLDT  216 (325)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHH-HcCCcEEecCCCc-cHHHHHHHHcCCCCCcEEEEC
Confidence            9999999999989999999999999999999887 677778887 8898888887765 677778877766 89999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc----c----cchHHHHHHHHHHH
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH----Y----HLYPKFLEMIIPHI  228 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~  228 (268)
                      +++......+++++++|+++.++.....     .    ....+.+++.+........    .    ....+.+.++.+++
T Consensus       217 ~~~~~~~~~~~~l~~~G~~v~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (325)
T cd08271         217 VGGETAAALAPTLAFNGHLVCIQGRPDA-----S----PDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELL  287 (325)
T ss_pred             CCcHhHHHHHHhhccCCEEEEEcCCCCC-----c----chhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHH
Confidence            9987777899999999999998653211     0    1122334444444333221    1    23445678888999


Q ss_pred             HcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          229 KEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       229 ~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++.+++.....++++++.++++.+.++...+|+++++
T Consensus       288 ~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         288 AAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             HCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            99999877667889999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.96  E-value=6e-27  Score=195.94  Aligned_cols=254  Identities=25%  Similarity=0.336  Sum_probs=191.9

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      |++|+|..+|++++++++||+|+++      |+|++|+.++.+.++++ |++++.. .++.+++++.+||+++...+.+.
T Consensus        80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~l-p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~  157 (350)
T cd08248          80 DCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKK-PKNLSHE-EAASLPYAGLTAWSALVNVGGLN  157 (350)
T ss_pred             eeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecC-CCCCCHH-HHhhchhHHHHHHHHHHHhccCC
Confidence            6789999999999999999999984      89999999999999999 8885444 37788999999999997777775


Q ss_pred             C----CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           79 H----GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        79 ~----~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +    +++++|+|++|++|++++++++.+|++|+++.++ ++.+.++ ++|.+.+++.... ++...+...  +++|+++
T Consensus       158 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~~-~~~~~l~~~--~~vd~vi  232 (350)
T cd08248         158 PKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVK-SLGADDVIDYNNE-DFEEELTER--GKFDVIL  232 (350)
T ss_pred             CccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHH-HhCCceEEECCCh-hHHHHHHhc--CCCCEEE
Confidence            4    9999999999999999999999999999988855 5667777 8898888887765 555555432  3799999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCcc---cc-chHHHHhccee-ee-eEE-ecccccchHHHHHHHHHH
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEG---VH-NLMYLVSKRLR-ME-GFI-VLDHYHLYPKFLEMIIPH  227 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~  227 (268)
                      |++|+.....++++++++|+++.+|............   .. ....+...... +. ... .+.......+.+.++.++
T Consensus       233 ~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (350)
T cd08248         233 DTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKL  312 (350)
T ss_pred             ECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHH
Confidence            9999988899999999999999998643110000000   00 00011111110 00 000 000012236778999999


Q ss_pred             HHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          228 IKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       228 ~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                      +.++.+.+.+...+++++++++++.+.+++..+|++++
T Consensus       313 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         313 VEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             HhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            99999988777889999999999999988878888863

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=1.2e-26  Score=192.64  Aligned_cols=240  Identities=24%  Similarity=0.266  Sum_probs=194.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEE----------------------------e---ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVW----------------------------G---MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~----------------------------~---~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|..+|++++++++||+|+                            +   .|+|++|++++.+.++++ |++++
T Consensus        59 ~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-p~~~~  137 (330)
T cd08245          59 HEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL-PDGLP  137 (330)
T ss_pred             ccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEEC-CCCCC
Confidence            478999999999999999999997                            3   278999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. +++.+.+.+.+||+++.. ..+.++++|+|+|+ |++|++++++++..|++|+++++++++.+.++ ++|++.+++.
T Consensus       138 ~~-~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~-g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~  213 (330)
T cd08245         138 LA-QAAPLLCAGITVYSALRD-AGPRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITRSPDKRELAR-KLGADEVVDS  213 (330)
T ss_pred             HH-HhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCcEEecc
Confidence            44 367788999999999965 68999999999975 77999999999999999999999999999997 8898877776


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      ... .....    ..+++|+++|+++. .....++++++++|+++.++.....     ....+...++.++.++.++...
T Consensus       214 ~~~-~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  283 (330)
T cd08245         214 GAE-LDEQA----AAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESP-----PFSPDIFPLIMKRQSIAGSTHG  283 (330)
T ss_pred             CCc-chHHh----ccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCC-----ccccchHHHHhCCCEEEEeccC
Confidence            553 33222    22479999999885 7888999999999999999864321     1112234466677777776654


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      .     ...++++++++.++.+++ ....+++++++++++.+.+++..+|+|+
T Consensus       284 ~-----~~~~~~~~~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         284 G-----RADLQEALDFAAEGKVKP-MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             C-----HHHHHHHHHHHHcCCCcc-eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            3     567888899999999886 3467899999999999999998889875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=1.4e-26  Score=192.08  Aligned_cols=234  Identities=21%  Similarity=0.173  Sum_probs=189.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .+++|+|..+|+++.++++||+|+.                               .|+|++|+.++.+.++++ |++++
T Consensus        64 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-p~~~~  142 (329)
T cd08298          64 HEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPI-PEDYD  142 (329)
T ss_pred             ccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEEC-CCCCC
Confidence            4689999999999999999999975                               278999999999999999 88854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. .++.+++++.+||+++ ..++++++++++|+| +|++|++++++++..|++|+++++++++.+.++ ++|++.+++.
T Consensus       143 ~~-~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~  218 (329)
T cd08298         143 DE-EAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEHQELAR-ELGADWAGDS  218 (329)
T ss_pred             HH-HhhHhhhhhHHHHHHH-HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH-HhCCcEEecc
Confidence            44 3778999999999999 788999999999997 599999999999999999999999999999997 8998777766


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      +.  .        ..+++|+++++.+. ..+..++++++++|+++.+|....     .....++.. +.++..+.+....
T Consensus       219 ~~--~--------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~-~~~~~~i~~~~~~  282 (329)
T cd08298         219 DD--L--------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMS-----DIPAFDYEL-LWGEKTIRSVANL  282 (329)
T ss_pred             Cc--c--------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCC-----CCCccchhh-hhCceEEEEecCC
Confidence            53  1        12379999998765 788999999999999998874221     111122222 3455555554332


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                           ..+.++.+.+++.++.+++. ..+|+++++++|++.+.+++..||+|+
T Consensus       283 -----~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         283 -----TRQDGEEFLKLAAEIPIKPE-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             -----CHHHHHHHHHHHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence                 25678889999999998874 468999999999999999999899874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=8.2e-27  Score=192.72  Aligned_cols=230  Identities=18%  Similarity=0.177  Sum_probs=182.2

Q ss_pred             CCccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCC
Q 024411            3 PISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDV   51 (268)
Q Consensus         3 ~~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~   51 (268)
                      ..+++|+|.++|++   +++||+|.+                               .|+|++|++++.+.++++ |+++
T Consensus        55 G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-P~~~  130 (319)
T cd08242          55 GHEFVGIVEEGPEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVV-PDLV  130 (319)
T ss_pred             CceEEEEEEEeCCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEEC-cCCC
Confidence            35789999999988   679999962                               268999999999999999 8884


Q ss_pred             CchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           52 PLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        52 ~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      +.  +.+++..+..++|.++ ...+++++++|+|+| +|++|++++|+|+.+|++|+++++++++.+.++ ++|++.+++
T Consensus       131 ~~--~~aa~~~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~  205 (319)
T cd08242         131 PD--EQAVFAEPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLP  205 (319)
T ss_pred             CH--HHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeC
Confidence            43  3333325556676665 667899999999997 599999999999999999999999999999999 799987776


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      ++.  .        +.+ ++|+++||+|+ ..+..++++++++|+++..+....      ....+...++.++.++.+..
T Consensus       206 ~~~--~--------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~i~~~~  269 (319)
T cd08242         206 DEA--E--------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAG------PASFDLTKAVVNEITLVGSR  269 (319)
T ss_pred             ccc--c--------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC------CCccCHHHheecceEEEEEe
Confidence            643  1        233 89999999987 678899999999999998665321      12234455667788887765


Q ss_pred             ecccccchHHHHHHHHHHHHcCCc--eeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ...        ++++++++.++++  .+.+.+.|+++++++||+.+.++. .+|+|+++
T Consensus       270 ~~~--------~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~~  319 (319)
T cd08242         270 CGP--------FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLRP  319 (319)
T ss_pred             ccc--------HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence            432        6778899999998  456778999999999999998766 57998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.4e-26  Score=191.15  Aligned_cols=258  Identities=25%  Similarity=0.396  Sum_probs=205.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .+++|+|..+|+++.++++||+|+++   |+|++|+.++.+.++++ |++++.. +++.++++..+||+++...+.++++
T Consensus        62 ~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~i-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~  139 (337)
T cd08275          62 FECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPL-PDGMSFE-EAAAFPVNYLTAYYALFELGNLRPG  139 (337)
T ss_pred             ceeEEEEEEECCCCcCCCCCCEEEEecCCCeeeeEEEecHHHeEEC-CCCCCHH-HHhhhhHHHHHHHHHHHHhhCCCCC
Confidence            46889999999999999999999997   78999999999999999 8874443 3677888999999999888889999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++|+|+|++|++|++++++++.. +..++... .+++.+.++ .+|.+.+++.... ++...++..+++++|+++||+|+
T Consensus       140 ~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~v~~~~g~  216 (337)
T cd08275         140 QSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALK-ENGVTHVIDYRTQ-DYVEEVKKISPEGVDIVLDALGG  216 (337)
T ss_pred             CEEEEEcCcchHHHHHHHHHHHccCcEEEEeC-CHHHHHHHH-HcCCcEEeeCCCC-cHHHHHHHHhCCCceEEEECCcH
Confidence            99999999999999999999998 43433332 455778887 8898888887765 77777777765589999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCC-----------ccccchHHHHhcceeeeeEEecccc---cchHHHHHHHH
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKP-----------EGVHNLMYLVSKRLRMEGFIVLDHY---HLYPKFLEMII  225 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  225 (268)
                      .....++++++++|+++.+|.....+....           .........+.+++++.++......   ......+.++.
T Consensus       217 ~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (337)
T cd08275         217 EDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLL  296 (337)
T ss_pred             HHHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHH
Confidence            888899999999999999986432110000           0112224557888888887754321   12234678888


Q ss_pred             HHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          226 PHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       226 ~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +++.++.+++.....|++++++++++.+.+++..+|+++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         297 KLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             HHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            99999999887778899999999999999988889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=5e-26  Score=187.86  Aligned_cols=247  Identities=29%  Similarity=0.325  Sum_probs=189.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .+++|.|.++|++++.+++||+|+++      |+|++|..++.+.++++ |++++.. .++.+++++.+||+++.....+
T Consensus        64 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~i-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~  141 (319)
T cd08267          64 MDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKK-PEGVSFE-EAAALPVAGLTALQALRDAGKV  141 (319)
T ss_pred             ceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEEEechhheEEC-CCCCCHH-HHHhhhhHHHHHHHHHHHhcCC
Confidence            36789999999999999999999985      78999999999999999 8885444 4778899999999999888789


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      +++++++|+|++|++|++++++++..|++|++++++ ++.+.++ ++|.+++++.... ++.   ...+.+ ++|+++||
T Consensus       142 ~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~~-~~~---~~~~~~~~~d~vi~~  215 (319)
T cd08267         142 KPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR-SLGADEVIDYTTE-DFV---ALTAGGEKYDVIFDA  215 (319)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH-HcCCCEeecCCCC-Ccc---hhccCCCCCcEEEEC
Confidence            999999999999999999999999999999999864 7888887 8998878876654 443   333444 89999999


Q ss_pred             CCh--hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce
Q 024411          157 VGG--KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       157 ~g~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      +|+  ......+..++++|+++.+|........ ...... .........+......  .  ..+.+.++.+++.++.++
T Consensus       216 ~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~  289 (319)
T cd08267         216 VGNSPFSLYRASLALKPGGRYVSVGGGPSGLLL-VLLLLP-LTLGGGGRRLKFFLAK--P--NAEDLEQLAELVEEGKLK  289 (319)
T ss_pred             CCchHHHHHHhhhccCCCCEEEEeccccccccc-cccccc-hhhccccceEEEEEec--C--CHHHHHHHHHHHHCCCee
Confidence            995  3334444459999999999874321100 000000 0111111222222211  1  167888999999999998


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +.+...++++++++|++.+.++...+|+++
T Consensus       290 ~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         290 PVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             eeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            888889999999999999998877788874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=5.8e-26  Score=186.38  Aligned_cols=211  Identities=24%  Similarity=0.331  Sum_probs=175.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .+++|+|+.+|++++.+++||+|++.                               |+|++|++++.+.++++ |++++
T Consensus        61 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l-p~~~~  139 (306)
T cd08258          61 HEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL-PENLS  139 (306)
T ss_pred             cceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEEC-cCCCC
Confidence            46789999999999999999999873                               78999999999999999 98844


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHhcCCCeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA--GSKDKVDLLKNKFGFDEAF  130 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~--~~~~~~~~~~~~~g~~~v~  130 (268)
                      .  +.++++..+.+||+++...++++++++|+|.| +|++|++++|+|+..|++|+.++  +++++.+.++ ++|++++ 
T Consensus       140 ~--~~aa~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~-~~g~~~~-  214 (306)
T cd08258         140 L--EAAALTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAK-ELGADAV-  214 (306)
T ss_pred             H--HHHHhhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHH-HhCCccc-
Confidence            4  44458888999999998888999999999976 59999999999999999988773  3445677777 8998777 


Q ss_pred             ecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeE
Q 024411          131 NYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF  208 (268)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (268)
                      ++... ++...+....++ ++|+++|+.|+ ..+...+++++++|+++.+|..++     .....+...++.+++++.|+
T Consensus       215 ~~~~~-~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~i~g~  288 (306)
T cd08258         215 NGGEE-DLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGP-----LAASIDVERIIQKELSVIGS  288 (306)
T ss_pred             CCCcC-CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC-----CCcccCHHHHhhcCcEEEEE
Confidence            77665 788888877766 89999999986 788899999999999999988542     11234556777899999998


Q ss_pred             EecccccchHHHHHHHHHHHHcC
Q 024411          209 IVLDHYHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g  231 (268)
                      ..++     .++++++++++++|
T Consensus       289 ~~~~-----~~~~~~~~~~~~~~  306 (306)
T cd08258         289 RSST-----PASWETALRLLASG  306 (306)
T ss_pred             ecCc-----hHhHHHHHHHHhcC
Confidence            8866     66788888888765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.95  E-value=1.2e-25  Score=184.59  Aligned_cols=238  Identities=28%  Similarity=0.383  Sum_probs=195.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .+++|.|+.+|++++.+++||+|+++      |+|++|+.++.+.++++ |++++.. .++.+++...++++++.....+
T Consensus        65 ~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~-p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~  142 (309)
T cd05289          65 HDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALK-PANLSFE-EAAALPLAGLTAWQALFELGGL  142 (309)
T ss_pred             cceeEEEEeeCCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccC-CCCCCHH-HHHhhhHHHHHHHHHHHhhcCC
Confidence            46789999999999999999999985      69999999999999999 8885444 3677888899999999887779


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      .++++++|+|++|++|++++++++..|++|+++++++ +.+.++ .+|.+.+++.... ++..    ...+ ++|+++|+
T Consensus       143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~-~~g~~~~~~~~~~-~~~~----~~~~~~~d~v~~~  215 (309)
T cd05289         143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR-SLGADEVIDYTKG-DFER----AAAPGGVDAVLDT  215 (309)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH-HcCCCEEEeCCCC-chhh----ccCCCCceEEEEC
Confidence            9999999999999999999999999999999998777 778787 8888777776654 4433    2333 79999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceee
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV  236 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  236 (268)
                      +++.....++++++++|+++.+|....     .  ..   ..+.+++++.......   . .+.+.++.+++.++.+.+.
T Consensus       216 ~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~--~~---~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~  281 (309)
T cd05289         216 VGGETLARSLALVKPGGRLVSIAGPPP-----A--EQ---AAKRRGVRAGFVFVEP---D-GEQLAELAELVEAGKLRPV  281 (309)
T ss_pred             CchHHHHHHHHHHhcCcEEEEEcCCCc-----c--hh---hhhhccceEEEEEecc---c-HHHHHHHHHHHHCCCEEEe
Confidence            999888999999999999999986321     0  00   3345566665554322   1 5678889999999999887


Q ss_pred             eehhcccccHHHHHHHHHcCCccceEEE
Q 024411          237 EDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       237 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +...+++++++++++.+.++...+|+++
T Consensus       282 ~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         282 VDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             eccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            7788999999999999998877788774

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=7.3e-25  Score=176.73  Aligned_cols=208  Identities=29%  Similarity=0.399  Sum_probs=170.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------------------------cccceeEeecCCcceeecCCCCCchhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------------------------TGWEEYSLITAPHLFKIQHTDVPLSYYT   57 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~~   57 (268)
                      .+++|+|.++|++++.|++||+|+++                          |+|++|+.++.+.++++ |++++.. ++
T Consensus        35 ~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~~~~~~-~a  112 (271)
T cd05188          35 HEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPL-PDGLSLE-EA  112 (271)
T ss_pred             cccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEEC-CCCCCHH-Hh
Confidence            46789999999999999999999973                          68999999999999999 8885444 37


Q ss_pred             hhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhh
Q 024411           58 GILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD  137 (268)
Q Consensus        58 a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  137 (268)
                      +.++.++.+||+++.....+.++++|+|+|+++ +|++++++++..|.+|+++++++++.+.++ ++|.+.+++.... .
T Consensus       113 ~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~  189 (271)
T cd05188         113 ALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKEE-D  189 (271)
T ss_pred             hHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceeccCCcC-C
Confidence            788899999999998887779999999999866 999999999999999999999999999988 8888888877765 5


Q ss_pred             HHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccccc
Q 024411          138 LNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH  215 (268)
Q Consensus       138 ~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (268)
                      ....+. ...+ ++|+++|+++. ..+...+++++++|+++.++.....     .........+.+++++.++....   
T Consensus       190 ~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---  260 (271)
T cd05188         190 LEEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGG-----PPLDDLRRLLFKELTIIGSTGGT---  260 (271)
T ss_pred             HHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCC-----CCcccHHHHHhcceEEEEeecCC---
Confidence            666665 4444 89999999998 8889999999999999999875421     11122446678899999988765   


Q ss_pred             chHHHHHHHHHH
Q 024411          216 LYPKFLEMIIPH  227 (268)
Q Consensus       216 ~~~~~~~~~~~~  227 (268)
                        ...+++++++
T Consensus       261 --~~~~~~~~~~  270 (271)
T cd05188         261 --REDFEEALDL  270 (271)
T ss_pred             --HHHHHHHHhh
Confidence              3445555443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.80  E-value=2.4e-18  Score=123.41  Aligned_cols=127  Identities=25%  Similarity=0.440  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC-hhhHHhHHHh
Q 024411           91 AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG-GKLLDAVLPN  168 (268)
Q Consensus        91 ~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g-~~~~~~~~~~  168 (268)
                      ++|++++|+|+++|++|+++++++++.+.++ ++|+++++++++. ++.+++++.+++ ++|++|||+| ...+..++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~~Ga~~~~~~~~~-~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~   78 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-ELGADHVIDYSDD-DFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL   78 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTESEEEETTTS-SHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-hhccccccccccc-ccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence            5899999999999999999999999999999 9999999999987 899999999988 9999999999 5899999999


Q ss_pred             hhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHH
Q 024411          169 MKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIK  229 (268)
Q Consensus       169 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (268)
                      ++++|+++.+|...     ......+...++.+++++.++..++     .+.+++++++++
T Consensus        79 l~~~G~~v~vg~~~-----~~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~la  129 (130)
T PF00107_consen   79 LRPGGRIVVVGVYG-----GDPISFNLMNLMFKEITIRGSWGGS-----PEDFQEALQLLA  129 (130)
T ss_dssp             EEEEEEEEEESSTS-----TSEEEEEHHHHHHTTEEEEEESSGG-----HHHHHHHHHHHH
T ss_pred             hccCCEEEEEEccC-----CCCCCCCHHHHHhCCcEEEEEccCC-----HHHHHHHHHHhc
Confidence            99999999999854     2345667889999999999999877     677777777765

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.66  E-value=3.7e-16  Score=111.54  Aligned_cols=122  Identities=30%  Similarity=0.341  Sum_probs=80.9

Q ss_pred             cCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC--hhhH-HhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHh
Q 024411          124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG--GKLL-DAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVS  200 (268)
Q Consensus       124 ~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  200 (268)
                      +|+++++||+.. ++      ..++++|+|||++|  ++.+ ..++++| ++|+++.++..           ........
T Consensus         1 LGAd~vidy~~~-~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~~-----------~~~~~~~~   61 (127)
T PF13602_consen    1 LGADEVIDYRDT-DF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGGD-----------LPSFARRL   61 (127)
T ss_dssp             CT-SEEEETTCS-HH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-SH-----------HHHHHHHH
T ss_pred             CCcCEEecCCCc-cc------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECCc-----------ccchhhhh
Confidence            689999999975 55      23458999999999  7544 8888999 99999988640           00111111


Q ss_pred             cceeeeeEEecccc--cchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          201 KRLRMEGFIVLDHY--HLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       201 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                      +...+.........  ....+.++++.+++.+|+++|.+.++|||+++++|++.+++++..||+|+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   62 KGRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             HCHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             cccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            12222222221111  12456799999999999999999999999999999999999999999996

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.47  E-value=1.7e-12  Score=108.69  Aligned_cols=175  Identities=13%  Similarity=0.088  Sum_probs=128.7

Q ss_pred             HHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHH
Q 024411           66 TAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        66 ~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      .+|.++.+..+ ..+|++|+|.|+ |.+|+.+++.++.+|++|++++.++.+.+.++ .+|+.. ++      ..+.+  
T Consensus       187 s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-~~G~~~-~~------~~e~v--  255 (413)
T cd00401         187 SLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAA-MEGYEV-MT------MEEAV--  255 (413)
T ss_pred             hhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-hcCCEE-cc------HHHHH--
Confidence            34555555444 368999999997 99999999999999999999999999999998 888742 21      11122  


Q ss_pred             HCCCCccEEEeCCCh-hhHHhH-HHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHH
Q 024411          145 YFPEGIDIYFENVGG-KLLDAV-LPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLE  222 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~-~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (268)
                         .++|++++|+|. ..+... ++.++++|+++.+|..        ...++...+..+++++.++..+..    ...++
T Consensus       256 ---~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--------~~eId~~~L~~~el~i~g~~~~~~----~~~~~  320 (413)
T cd00401         256 ---KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--------DVEIDVKGLKENAVEVVNIKPQVD----RYELP  320 (413)
T ss_pred             ---cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--------CCccCHHHHHhhccEEEEccCCcc----eEEcC
Confidence               248999999998 556655 9999999999999852        224566677778888887766431    11233


Q ss_pred             --HHHHHHHcCCc---eeeeehh-----cccc-cHHHHHHHHHcCCc-cceEEEEe
Q 024411          223 --MIIPHIKEGKL---VYVEDMA-----EGLE-SAPAALIGLFSGQN-VGKQVVAV  266 (268)
Q Consensus       223 --~~~~~~~~g~l---~~~~~~~-----~~~~-~~~~a~~~~~~~~~-~gkvvi~~  266 (268)
                        ..+.++.+|.+   .+.+.+.     ++|+ ++.+++..+.++.. ..|+++.+
T Consensus       321 ~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p  376 (413)
T cd00401         321 DGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP  376 (413)
T ss_pred             CcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence              57889999988   3445555     6788 99999999987654 24666654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.34  E-value=4.7e-11  Score=102.68  Aligned_cols=149  Identities=15%  Similarity=0.105  Sum_probs=105.4

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCh------------hhHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-FNYKEE------------ADLNAALK  143 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~~~------------~~~~~~~~  143 (268)
                      ..++++|+|+|+ |.+|+++++.|+.+|++|++++.++++.+.++ ++|++.+ +|..+.            .++.+..+
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            467999999998 99999999999999999999999999999999 8999843 554321            02222322


Q ss_pred             HH-CC--CCccEEEeCCChh------h-HHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHh-cceeeeeEEecc
Q 024411          144 RY-FP--EGIDIYFENVGGK------L-LDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVS-KRLRMEGFIVLD  212 (268)
Q Consensus       144 ~~-~~--~~~d~v~d~~g~~------~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  212 (268)
                      +. ..  +++|++|+|++.+      . .+++++.++++|+++.++...+.+...   ......++. +++++.|.....
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~---t~~~~~v~~~~gVti~Gv~n~P  316 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCEL---TVPGEVVVTDNGVTIIGYTDLP  316 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCccc---ccCccceEeECCEEEEEeCCCc
Confidence            32 22  3699999999952      3 489999999999999998743221111   111223444 788888765322


Q ss_pred             cccchHHHHHHHHHHHHcCCcee
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                           .+.-.+..+++.++.+..
T Consensus       317 -----~~~p~~As~lla~~~i~l  334 (509)
T PRK09424        317 -----SRLPTQSSQLYGTNLVNL  334 (509)
T ss_pred             -----hhHHHHHHHHHHhCCccH
Confidence                 344445788888887653

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.78  E-value=5.5e-07  Score=72.54  Aligned_cols=165  Identities=18%  Similarity=0.203  Sum_probs=107.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEeccc------------------------------cceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGMTG------------------------------WEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~g~------------------------------~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      ||.-|...++.|++..+.+|+||+|+=.                              |..|.++..+..+.  |+   .
T Consensus        33 vPvWGfA~VveS~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~--~~---~  107 (314)
T PF11017_consen   33 VPVWGFATVVESRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD--PE---R  107 (314)
T ss_pred             cccceEEEEEeeCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC--cc---h
Confidence            6778888999999999999999999822                              34444444433221  11   1


Q ss_pred             hhhhhhccchHHHHHHHhhhhc--CCCCCcEEEEecCcchHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHhcCC-Ce
Q 024411           54 SYYTGILGMPGMTAYVGFYEVC--SPKHGECVFISAASGAVGQLVGQFAK--LLGCYVVGSAGSKDKVDLLKNKFGF-DE  128 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~--~~~~~~~vlI~ga~g~~G~~~i~l~~--~~g~~V~~~~~~~~~~~~~~~~~g~-~~  128 (268)
                      ....+.+-..+.|.|.+-+...  ..-..+.|+|..|++-+++.++.+++  ..+.+++.++ |..+..+.+ .+|. +.
T Consensus       108 e~~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve-~lg~Yd~  185 (314)
T PF11017_consen  108 EDWQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVE-SLGCYDE  185 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhh-ccCCceE
Confidence            1112333334556654432221  13345789999998989999998888  3345999999 666677777 8887 67


Q ss_pred             eeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCC-EEEEEcccc
Q 024411          129 AFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRG-RIAACGMIS  182 (268)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G-~~v~~g~~~  182 (268)
                      |+.|++       +.++....--+++|+.|+ .......++++..= ..+.+|...
T Consensus       186 V~~Yd~-------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  186 VLTYDD-------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             Eeehhh-------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            887764       333323456789999998 56666667777643 456666543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.58  E-value=8.1e-07  Score=71.80  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=99.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHC--C
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~--~  147 (268)
                      +.+.++++||.+|+ |+ |..+.++++..+.  +|++++.+++..+.+++.   .+...+ ..... +    +.+..  .
T Consensus        73 ~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~-d----~~~l~~~~  144 (272)
T PRK11873         73 AELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLG-E----IEALPVAD  144 (272)
T ss_pred             ccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEc-c----hhhCCCCC
Confidence            56789999999996 55 8888888888775  799999999988888732   233322 11111 2    22222  2


Q ss_pred             CCccEEEeCC------Ch-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHH
Q 024411          148 EGIDIYFENV------GG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF  220 (268)
Q Consensus       148 ~~~d~v~d~~------g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (268)
                      +.||+|+...      .. ..+..+.+.|+|+|+++..+.....     .  .  ...+.+...+.+.......     .
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-----~--~--~~~~~~~~~~~~~~~~~~~-----~  210 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-----E--L--PEEIRNDAELYAGCVAGAL-----Q  210 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-----C--C--CHHHHHhHHHHhccccCCC-----C
Confidence            3799988543      22 5689999999999999987653211     0  0  1111222222211111111     1


Q ss_pred             HHHHHHHHHcCCc---eeeeehhcccccHHHHHHHH--HcCCccceEEE
Q 024411          221 LEMIIPHIKEGKL---VYVEDMAEGLESAPAALIGL--FSGQNVGKQVV  264 (268)
Q Consensus       221 ~~~~~~~~~~g~l---~~~~~~~~~~~~~~~a~~~~--~~~~~~gkvvi  264 (268)
                      .+++.+++.+..+   .......+++++..++++.+  .++...++.+.
T Consensus       211 ~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  259 (272)
T PRK11873        211 EEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLDGYIV  259 (272)
T ss_pred             HHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhccccccccCceEE
Confidence            2334455555322   33344567889999999988  55554455544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.53  E-value=1e-06  Score=76.00  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=78.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCh------------hhHHHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEE------------ADLNAALKR  144 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~------------~~~~~~~~~  144 (268)
                      .++++++|+|+ |.+|+.+++.++.+|++|++.+.++++.+.++ ++|... .++..+.            +++.+...+
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            45789999998 99999999999999999999999999999998 888865 2332110            023332233


Q ss_pred             HCC---CCccEEEeCC---Ch--h--hHHhHHHhhhcCCEEEEEccccc
Q 024411          145 YFP---EGIDIYFENV---GG--K--LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       145 ~~~---~~~d~v~d~~---g~--~--~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ...   .++|++++|+   |.  +  ..+..++.+++++.+|.++...+
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~G  288 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQG  288 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCC
Confidence            222   2699999999   54  2  45788999999999999876443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.47  E-value=1.5e-06  Score=67.00  Aligned_cols=81  Identities=26%  Similarity=0.392  Sum_probs=64.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----CeeeecCChhhHHHHHHHHCCC--CccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF----DEAFNYKEEADLNAALKRYFPE--GIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~~~~--~~d~  152 (268)
                      +++.++|+||++|+|.+.++.+...|++|+.+.|+.++++.+.++++.    ...+|..+.++....+......  .+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            457899999999999999999999999999999999999998878883    2355666543444455544333  6999


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++.+|-
T Consensus        85 LvNNAGl   91 (246)
T COG4221          85 LVNNAGL   91 (246)
T ss_pred             EEecCCC
Confidence            9999984

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=98.46  E-value=1.9e-07  Score=64.46  Aligned_cols=43  Identities=28%  Similarity=0.460  Sum_probs=37.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKI   46 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~   46 (268)
                      -|++|+|+++|+++++|++||+|.+.                              |+|+||++++++.++++
T Consensus        37 hE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   37 HEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             cceeeeeeeeccccccccccceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence            57799999999999999999999763                              78999999998888764

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.38  E-value=5.6e-06  Score=70.15  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=77.9

Q ss_pred             HHHHHHhhhhcCCC-CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHH
Q 024411           65 MTAYVGFYEVCSPK-HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALK  143 (268)
Q Consensus        65 ~~a~~~l~~~~~~~-~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  143 (268)
                      -.+|+++.+..++. .+++++|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|.. +.      ++.+.+ 
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~-v~------~l~eal-  265 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFR-VM------TMEEAA-  265 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCE-ec------CHHHHH-
Confidence            34566665554544 8999999997 99999999999999999999998887766665 55543 22      222222 


Q ss_pred             HHCCCCccEEEeCCCh-hhHH-hHHHhhhcCCEEEEEcccc
Q 024411          144 RYFPEGIDIYFENVGG-KLLD-AVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~-~~~~-~~~~~l~~~G~~v~~g~~~  182 (268)
                          .++|++++++|. ..+. ..+..+++++.++..|..+
T Consensus       266 ----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        266 ----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                258999999998 4454 6788899999999988744

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.30  E-value=1.4e-05  Score=67.43  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             HHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHH
Q 024411           66 TAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        66 ~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      .++.++.+..+ ...|++|+|.|. |.+|+.+++.++.+|++|+++..++.+...+. ..|. .+.+      ..+.+  
T Consensus       180 s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~-~v~~------leeal--  248 (406)
T TIGR00936       180 STIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGF-RVMT------MEEAA--  248 (406)
T ss_pred             hHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCC-EeCC------HHHHH--
Confidence            34455544434 368999999997 99999999999999999999988887766666 5565 2321      22222  


Q ss_pred             HCCCCccEEEeCCCh-hhHH-hHHHhhhcCCEEEEEccc
Q 024411          145 YFPEGIDIYFENVGG-KLLD-AVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~-~~~~-~~~~~l~~~G~~v~~g~~  181 (268)
                         .+.|++++++|. ..+. ..+..+++++.++.+|..
T Consensus       249 ---~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       249 ---KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             ---hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence               247999999998 4455 488899999999998774

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.27  E-value=3e-05  Score=65.23  Aligned_cols=98  Identities=22%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC--
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV--  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~--  157 (268)
                      +.+++|+|+ |.+|+.+++.++.+|++|+++++++++.+.+.+.++......+...+.+.+.+.     .+|++++|+  
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~-----~aDvVI~a~~~  240 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK-----RADLLIGAVLI  240 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc-----cCCEEEEcccc
Confidence            455899997 999999999999999999999999888777763555432222222213333332     489999997  


Q ss_pred             -Ch--h--hHHhHHHhhhcCCEEEEEccccc
Q 024411          158 -GG--K--LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       158 -g~--~--~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                       +.  +  .....++.+++++.++.++...+
T Consensus       241 ~g~~~p~lit~~~l~~mk~g~vIvDva~d~G  271 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPGAVIVDVAIDQG  271 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence             32  2  23677888999999999886443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02494 adenosylhomocysteinase

Probab=98.26  E-value=1.6e-05  Score=67.73  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             HHHHhhhhcCC-CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHH
Q 024411           67 AYVGFYEVCSP-KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        67 a~~~l~~~~~~-~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      .+.++.+..++ -.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+. ..|.. ++      .+.+.++  
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-~~G~~-vv------~leEal~--  308 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQAL-MEGYQ-VL------TLEDVVS--  308 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-hcCCe-ec------cHHHHHh--
Confidence            35555555443 57999999997 99999999999999999999988877665665 55654 22      2222232  


Q ss_pred             CCCCccEEEeCCChhh--HHhHHHhhhcCCEEEEEccc
Q 024411          146 FPEGIDIYFENVGGKL--LDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       146 ~~~~~d~v~d~~g~~~--~~~~~~~l~~~G~~v~~g~~  181 (268)
                         ..|+++++.|...  ....+..+++++.++.+|..
T Consensus       309 ---~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        309 ---EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             ---hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence               3899999999843  37899999999999999873

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.21  E-value=3.5e-05  Score=62.88  Aligned_cols=92  Identities=24%  Similarity=0.359  Sum_probs=71.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+++++|+|. |.+|+.+++.++.+|++|++.++++++.+.+. ++|... +.+.   ++.+.+.     .+|++|++++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-~~G~~~-~~~~---~l~~~l~-----~aDiVI~t~p  219 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARIT-EMGLSP-FHLS---ELAEEVG-----KIDIIFNTIP  219 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCee-ecHH---HHHHHhC-----CCCEEEECCC
Confidence            5889999997 99999999999999999999999988877777 777642 2111   2222222     4999999988


Q ss_pred             hh-hHHhHHHhhhcCCEEEEEccc
Q 024411          159 GK-LLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       159 ~~-~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      .. .....++.+++++.++.++..
T Consensus       220 ~~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             hhhhhHHHHHcCCCCcEEEEEccC
Confidence            64 345677889999999988763

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.15  E-value=4.1e-05  Score=61.04  Aligned_cols=143  Identities=17%  Similarity=0.240  Sum_probs=91.6

Q ss_pred             CCCCCCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHH
Q 024411           16 ENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQL   95 (268)
Q Consensus        16 ~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~   95 (268)
                      ..+.+++||+++...+|.+|.. +...++.+ +++  +++..+..+... .....+..  .+.++.+||-.|+ |. |..
T Consensus        63 ~~~p~~~g~~~~i~p~~~~~~~-~~~~~i~i-~p~--~afgtg~h~tt~-~~l~~l~~--~~~~~~~VLDiGc-Gs-G~l  133 (250)
T PRK00517         63 YFHPIRIGDRLWIVPSWEDPPD-PDEINIEL-DPG--MAFGTGTHPTTR-LCLEALEK--LVLPGKTVLDVGC-GS-GIL  133 (250)
T ss_pred             HCCCEEEcCCEEEECCCcCCCC-CCeEEEEE-CCC--CccCCCCCHHHH-HHHHHHHh--hcCCCCEEEEeCC-cH-HHH
Confidence            4566889999998888998865 66678888 444  443222222211 12223322  2568899999997 54 877


Q ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCee---eecCChhhHHHHHHHHCCC-CccEEEeCCCh----hhHHhHH
Q 024411           96 VGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEA---FNYKEEADLNAALKRYFPE-GIDIYFENVGG----KLLDAVL  166 (268)
Q Consensus        96 ~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~----~~~~~~~  166 (268)
                      ++.+++ .|+ +|++++.++...+.+++......+   +....            +. .||+|+.....    ..+..+.
T Consensus       134 ~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~Vvani~~~~~~~l~~~~~  200 (250)
T PRK00517        134 AIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVIVANILANPLLELAPDLA  200 (250)
T ss_pred             HHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEEEEcCcHHHHHHHHHHHH
Confidence            776554 566 699999999888877633221111   11111            11 59999876553    2456788


Q ss_pred             HhhhcCCEEEEEcc
Q 024411          167 PNMKIRGRIAACGM  180 (268)
Q Consensus       167 ~~l~~~G~~v~~g~  180 (268)
                      +.|+|+|+++..|.
T Consensus       201 ~~LkpgG~lilsgi  214 (250)
T PRK00517        201 RLLKPGGRLILSGI  214 (250)
T ss_pred             HhcCCCcEEEEEEC
Confidence            89999999998765

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.15  E-value=2.4e-05  Score=62.00  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-----ee--eecCChhhHHHHHHH-HC-C
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-----EA--FNYKEEADLNAALKR-YF-P  147 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-----~v--~~~~~~~~~~~~~~~-~~-~  147 (268)
                      ...+.+++|+||++|+|...+..+...|.+|+.+.|+.++++.+.+++.-.     ++  .|..+. +-...+.+ .. .
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~-~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDP-EALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCCh-hHHHHHHHHHHhc
Confidence            346789999999999999999999999999999999999988776555421     22  355554 33333333 22 2


Q ss_pred             C-CccEEEeCCCh
Q 024411          148 E-GIDIYFENVGG  159 (268)
Q Consensus       148 ~-~~d~v~d~~g~  159 (268)
                      + .+|+.++++|-
T Consensus        82 ~~~IdvLVNNAG~   94 (265)
T COG0300          82 GGPIDVLVNNAGF   94 (265)
T ss_pred             CCcccEEEECCCc
Confidence            2 79999999983

>PRK08324 short chain dehydrogenase; Validated

Probab=98.13  E-value=4e-05  Score=69.95  Aligned_cols=106  Identities=21%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C---eeeecCChhhHHHHHHHHC--CCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D---EAFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++||+||+|++|..+++.+...|++|++++++.++.+.+.+.++.  .   ...|..+.+.....+.+..  .+++
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i  499 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV  499 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3678999999999999999999999999999999998877666534443  1   1234444323333333321  2379


Q ss_pred             cEEEeCCCh--------------------------hhHHhHHHhhhc---CCEEEEEccccc
Q 024411          151 DIYFENVGG--------------------------KLLDAVLPNMKI---RGRIAACGMISQ  183 (268)
Q Consensus       151 d~v~d~~g~--------------------------~~~~~~~~~l~~---~G~~v~~g~~~~  183 (268)
                      |++++++|.                          ..++.+++.++.   +|+++.+++...
T Consensus       500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~  561 (681)
T PRK08324        500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNA  561 (681)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Confidence            999999982                          113344555655   588999887543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.11  E-value=4.7e-05  Score=60.09  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC---CCee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG---FDEA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g---~~~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .+++++|+|++|++|..+++.+...|++|+.+++++++.+.+.+...   ..+.  .|..+.+.....+++..  -+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            35799999999999999999999999999999999887766532332   1122  23333313333333221  13689


Q ss_pred             EEEeCCChh------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          152 IYFENVGGK------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       152 ~v~d~~g~~------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      .++.+++..                        .+...+++++++|+++.++...
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            999888731                        1334455666788898887654

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=2.8e-05  Score=58.30  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCChhh---HHHHHHHHCCCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--DEAFNYKEEAD---LNAALKRYFPEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~---~~~~~~~~~~~~~d~v~  154 (268)
                      |.+|||+||++|+|+..++-...+|-+|++..|++++++.++.+...  ..+.|..+.++   +...+....+ ..++++
T Consensus         5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNvli   83 (245)
T COG3967           5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNVLI   83 (245)
T ss_pred             CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chheee
Confidence            57899999999999999999999999999999999999998833322  23444444312   3334433222 578999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +++|-
T Consensus        84 NNAGI   88 (245)
T COG3967          84 NNAGI   88 (245)
T ss_pred             ecccc
Confidence            98873

>PRK05693 short chain dehydrogenase; Provisional

Probab=98.07  E-value=0.00011  Score=59.42  Aligned_cols=77  Identities=23%  Similarity=0.380  Sum_probs=56.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~d~~  157 (268)
                      +++||+||+|++|..+++.+...|++|++++++.++.+.+. ..+... ..|..+.+.+.+.+....  .+++|++++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47999999999999999999999999999999888777665 444432 245555323443333332  23699999998


Q ss_pred             C
Q 024411          158 G  158 (268)
Q Consensus       158 g  158 (268)
                      |
T Consensus        81 g   81 (274)
T PRK05693         81 G   81 (274)
T ss_pred             C
Confidence            8

>PRK12742 oxidoreductase; Provisional

Probab=98.07  E-value=0.00012  Score=57.72  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcCCCee-eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKFGFDEA-FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .++++||+||+|++|..+++.+...|++|+.+.+ ++++.+.+.++.+...+ .|..+.+.+.+.+.+.  +++|+++++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~li~~   82 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS--GALDILVVN   82 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh--CCCcEEEEC
Confidence            4679999999999999999999999999988764 45555554435554322 3443331333333322  368999999


Q ss_pred             CChhh--------------------------HHhHHHhhhcCCEEEEEcccc
Q 024411          157 VGGKL--------------------------LDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       157 ~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      +|...                          ...+.+.++..|+++.++...
T Consensus        83 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         83 AGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            87410                          123334455678999887644

>PRK06182 short chain dehydrogenase; Validated

Probab=98.04  E-value=0.00012  Score=59.20  Aligned_cols=80  Identities=24%  Similarity=0.392  Sum_probs=57.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      ++++++|+|++|++|..+++.+...|++|+++++++++.+.+. ..+... ..|..+.+.+...+.+..  .+++|++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3578999999999999999999999999999999988776665 444432 345555423433343321  237999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9873

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.01  E-value=9.2e-05  Score=53.07  Aligned_cols=93  Identities=20%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC--eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ++.+++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+.++++..  ..+++.   ++...+.     .+|++++
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~---~~~~~~~-----~~DivI~   81 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE---DLEEALQ-----EADIVIN   81 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG---GHCHHHH-----TESEEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH---HHHHHHh-----hCCeEEE
Confidence            5789999998 9999999999999999 5999999999888877577432  244444   3333333     4999999


Q ss_pred             CCChhhHHhHHHhhhcC----CEEEEEcc
Q 024411          156 NVGGKLLDAVLPNMKIR----GRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~----G~~v~~g~  180 (268)
                      |++.......-..+...    +.++.++.
T Consensus        82 aT~~~~~~i~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   82 ATPSGMPIITEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             -SSTTSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred             ecCCCCcccCHHHHHHHHhhhhceecccc
Confidence            98863222222223332    46666654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.00  E-value=6.8e-05  Score=61.72  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             ceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC---CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 024411           43 LFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP---KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVD  118 (268)
Q Consensus        43 ~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~---~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~  118 (268)
                      ++++ |+.  +..+.+....+..++++++......   .++.+|+|.|+ |.+|..+++.++..|+ +|+++.+++++..
T Consensus       141 a~~~-~k~--vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         141 AIKV-GKR--VRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHH-HHH--HhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            4555 555  4333444445666777776433221   47899999997 9999999999998775 8999999988764


Q ss_pred             HHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhhH
Q 024411          119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLL  162 (268)
Q Consensus       119 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  162 (268)
                      .+.+++|.. +++..   ++.+.+.     .+|+|+.|++.+..
T Consensus       217 ~la~~~g~~-~~~~~---~~~~~l~-----~aDvVi~at~~~~~  251 (311)
T cd05213         217 ELAKELGGN-AVPLD---ELLELLN-----EADVVISATGAPHY  251 (311)
T ss_pred             HHHHHcCCe-EEeHH---HHHHHHh-----cCCEEEECCCCCch
Confidence            444378763 33321   3333332     48999999998443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.98  E-value=0.00018  Score=57.76  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .+++++|+||+|++|..++..+...|++|++++++.++.+.+.++++.. .  ..|..+.+++.+.+.+..  .+.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4679999999999999999999999999999999887766655355432 1  234444323333333321  1368999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.++|
T Consensus        85 v~~ag   89 (261)
T PRK08265         85 VNLAC   89 (261)
T ss_pred             EECCC
Confidence            99887

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00015  Score=58.80  Aligned_cols=79  Identities=18%  Similarity=0.312  Sum_probs=57.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHH---HHCCCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALK---RYFPEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~---~~~~~~~d~v~  154 (268)
                      .+++++|+||+|++|..+++.+...|++|+++++++++.+.+. ..+... ..|..+.+++...+.   +..++.+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4578999999999999999999999999999999988887776 445432 235554323333333   22335799999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9876

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.92  E-value=0.00027  Score=60.62  Aligned_cols=91  Identities=20%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .-.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+. ..|.. +.      ++.+.++     ..|+++.+
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~-~~------~leell~-----~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQ-VV------TLEDVVE-----TADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCce-ec------cHHHHHh-----cCCEEEEC
Confidence            457999999997 99999999999999999999987776655555 44542 22      2222232     48999999


Q ss_pred             CChh-hH-HhHHHhhhcCCEEEEEccc
Q 024411          157 VGGK-LL-DAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       157 ~g~~-~~-~~~~~~l~~~G~~v~~g~~  181 (268)
                      +|.. .+ ...+..+++++.++.+|..
T Consensus       317 tGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCcccccCHHHHhccCCCcEEEEcCCC
Confidence            9874 44 4799999999999999864

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.91  E-value=0.0002  Score=57.32  Aligned_cols=106  Identities=25%  Similarity=0.342  Sum_probs=73.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe-e----eecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDE-A----FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~-v----~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++.|+|+||++|+|..++.-.-..|++++.+++..++.+.+.+   +.+... +    .|..+.++..+.+.+..  .|
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            57889999999999999999899999998888887776665521   333332 2    24444324444443322  34


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhhcC--CEEEEEcccccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMKIR--GRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~~~--G~~v~~g~~~~~  184 (268)
                      ++|+.++.+|-.                          ..+.+++.|++.  |++|.+++..+.
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~  154 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK  154 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence            799999988731                          145567777763  999999887764

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.88  E-value=0.00044  Score=55.60  Aligned_cols=81  Identities=22%  Similarity=0.340  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-e--eeecCChhhHHHHHHHHC-CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-E--AFNYKEEADLNAALKRYF-PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~~~~-~~~~  150 (268)
                      .++++||+|+++++|.++++.+...|++|+++++++++.+.+.+++    +.. .  ..|..+.++....+.+.. .+.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4688999999999999999999999999999999887766554332    221 1  234444323333333321 2469


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999998873

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00016  Score=59.26  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--e--eecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--A--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++.. .  .  .|..+.++....+.+..  .+.+|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999999988877665455431 1  1  34444323333333321  13699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999884

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.83  E-value=0.0022  Score=51.26  Aligned_cols=81  Identities=11%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHH---hcCCC---eeeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKN---KFGFD---EAFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++++|+|++|++|..+++.+...|++ |+++++++++.....+   ..+..   ...|..+.+.+.+.+....  -++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5678999999999999999999999998 9999988765543221   23332   1234444323333332221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|.++.+.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999874

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.82  E-value=0.00033  Score=58.37  Aligned_cols=105  Identities=24%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++++++|+||+|++|..+++.+...|++|+++++++++.+.+.++   .|...   ..|..+.++....+.+..  -+.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            467899999999999999999999999999999988776554322   34321   234444323333332221  1369


Q ss_pred             cEEEeCCChh--------------------------hHHhHHHhhhc--CCEEEEEccccc
Q 024411          151 DIYFENVGGK--------------------------LLDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       151 d~v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      |++++++|..                          ....+++.+.+  .|++|.+++..+
T Consensus        87 D~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~  147 (334)
T PRK07109         87 DTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALA  147 (334)
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence            9999998731                          01234455554  588998877554

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00024  Score=56.71  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      ++++++|+||+|++|..+++.+...|++|+++++++.+.+...++++.. ...|..+.+.....+.+..  .+.+|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999999999999999999999887766554345432 2235544323333333321  136899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            8873

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.76  E-value=0.00026  Score=56.84  Aligned_cols=80  Identities=21%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      ++++++|+||++++|..+++.+...|++|+++++++++.+.+.++++.. .  ..|..+.++....+.+..  .+.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            4678999999999999999999999999999999988777666344431 1  224333323333333321  2368999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        85 i~~ag   89 (263)
T PRK06200         85 VGNAG   89 (263)
T ss_pred             EECCC
Confidence            99887

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.75  E-value=0.0003  Score=56.47  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      ++++++|+||+|++|..+++.+...|++|+++.++.++.+.+.+..+.. .  ..|..+.++..+.+.+...  +.+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999999999999999887777665233321 1  1244433233333333221  368999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        84 i~~Ag   88 (262)
T TIGR03325        84 IPNAG   88 (262)
T ss_pred             EECCC
Confidence            99886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.00048  Score=54.56  Aligned_cols=79  Identities=23%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      ++.+++|+|++|++|..+++.+...|++|+++++++++.+.+.+..+... ..|..+.+.....+..  .+++|++++++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~--~~~~d~vi~~a   85 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAA--AGAFDGLVNCA   85 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHH--hCCCCEEEECC
Confidence            46789999999999999999999999999999998877766653444432 2354443123332322  23689999988


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      |.
T Consensus        86 g~   87 (245)
T PRK07060         86 GI   87 (245)
T ss_pred             CC
Confidence            73

>PRK06484 short chain dehydrogenase; Validated

Probab=97.74  E-value=0.00055  Score=60.68  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++.+||+||++++|..+++.+...|++|+++++++++.+.+.++++...   ..|..+.++....+.+..  .+.+|++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l  347 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVL  347 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46889999999999999999999999999999998888777764555431   234444323333333322  1469999


Q ss_pred             EeCCChh----h-----------------------HHhHHHhhhcCCEEEEEccccc
Q 024411          154 FENVGGK----L-----------------------LDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       154 ~d~~g~~----~-----------------------~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +.++|..    .                       .+.++..++.+|+++.+++..+
T Consensus       348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            9988731    0                       2233445555789999877554

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.74  E-value=0.00016  Score=49.92  Aligned_cols=95  Identities=20%  Similarity=0.298  Sum_probs=63.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~-~~g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      |+.+||-+|+  |.|..++.+++ ..+++|++++.+++..+.+++..   +...-+..... ++  .......++||+|+
T Consensus         1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~--~~~~~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQG-DA--EFDPDFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-CC--HGGTTTSSCEEEEE
T ss_pred             CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-cc--ccCcccCCCCCEEE
Confidence            6788999995  55888899998 57889999999999888887554   22211111111 22  11111123799998


Q ss_pred             eCC-Ch----h------hHHhHHHhhhcCCEEEEE
Q 024411          155 ENV-GG----K------LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       155 d~~-g~----~------~~~~~~~~l~~~G~~v~~  178 (268)
                      ... ..    .      .+..+.+.|+|+|+++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            766 21    1      267888899999998763

...

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.74  E-value=0.00077  Score=58.65  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=53.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +++++||+|++|++|..+++.+...|++|++++++.  ++.+.+.++++... ..|..+.+.....+....  .+++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            578999999999999999999999999999988643  33333332455432 345555422333222221  2369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus       289 i~~AG  293 (450)
T PRK08261        289 VHNAG  293 (450)
T ss_pred             EECCC
Confidence            99988

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.73  E-value=0.00082  Score=59.16  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--------CC-----Cee--eecCChhhH
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--------GF-----DEA--FNYKEEADL  138 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--------g~-----~~v--~~~~~~~~~  138 (268)
                      ..+.+.++++||+||+|++|..+++.+...|++|+++.++.++.+.+.+++        |.     ..+  .|..+.   
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~---  150 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP---  150 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH---
Confidence            345678899999999999999999999999999999999888765443111        11     112  233332   


Q ss_pred             HHHHHHHCCCCccEEEeCCChhh----------------HHhHHHhhhc--CCEEEEEcccc
Q 024411          139 NAALKRYFPEGIDIYFENVGGKL----------------LDAVLPNMKI--RGRIAACGMIS  182 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~----------------~~~~~~~l~~--~G~~v~~g~~~  182 (268)
                       ..+.... +++|++|.++|...                ...+++.+..  .+++|.++..+
T Consensus       151 -esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        151 -DQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             -HHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence             1233222 35999999987421                1223344333  36899887654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.72  E-value=0.0044  Score=50.37  Aligned_cols=91  Identities=22%  Similarity=0.327  Sum_probs=67.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+++++|+|. |.+|..++..++.+|++|++..+++++...+. +.+.. .+.+  . ++.+.+.     .+|++++++.
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~~-~~~~--~-~l~~~l~-----~aDiVint~P  218 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARIT-EMGLI-PFPL--N-KLEEKVA-----EIDIVINTIP  218 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-eecH--H-HHHHHhc-----cCCEEEECCC
Confidence            4789999997 99999999999999999999999988776665 55543 2221  1 3333232     4899999987


Q ss_pred             hhhH-HhHHHhhhcCCEEEEEcc
Q 024411          159 GKLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      ...+ ...++.++++..++.++.
T Consensus       219 ~~ii~~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       219 ALVLTADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             hHHhCHHHHhcCCCCeEEEEeCc
Confidence            6433 456677888877888766

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00035  Score=56.43  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=56.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      +.+++|+||+|++|..+++.+...|++|+++.+++++.+.+.+.++...  ..|..+.+++...+.+..  .+++|++++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVN   84 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999999999999999888899999999999887766543444222  234444323333333322  146899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        85 ~ag~   88 (273)
T PRK07825         85 NAGV   88 (273)
T ss_pred             CCCc
Confidence            9873

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00036  Score=55.91  Aligned_cols=84  Identities=14%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC----eeeecCChhhHHHHHHHHC--CCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD----EAFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ..-++.++||+||+|++|..++..+...|++|+++.++++..+.+.+.....    ...|..+.+.+...+.+..  -++
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            3457789999999999999999999999999999999877666554233221    1234444323322222221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|.++.++|.
T Consensus        87 ~d~vi~~ag~   96 (264)
T PRK12829         87 LDVLVNNAGI   96 (264)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.70  E-value=0.001  Score=50.24  Aligned_cols=93  Identities=19%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh---
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG---  159 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~---  159 (268)
                      |+|+||+|.+|..+++.+...|.+|++++|++++.+.   ..+. +++..+-. +. +.+.+... ++|.++.++|.   
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~-~~~~~d~~-d~-~~~~~al~-~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGV-EIIQGDLF-DP-DSVKAALK-GADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTE-EEEESCTT-CH-HHHHHHHT-TSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---cccc-ccceeeeh-hh-hhhhhhhh-hcchhhhhhhhhcc
Confidence            7899999999999999999999999999999887775   1222 23322221 22 23333222 59999999983   


Q ss_pred             --hhHHhHHHhhhcCC--EEEEEcccc
Q 024411          160 --KLLDAVLPNMKIRG--RIAACGMIS  182 (268)
Q Consensus       160 --~~~~~~~~~l~~~G--~~v~~g~~~  182 (268)
                        .......+.++..|  +++.++...
T Consensus        74 ~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   74 DVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccc
Confidence              34556666666544  777776543

...

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.00041  Score=57.69  Aligned_cols=80  Identities=24%  Similarity=0.391  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHH--CCCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRY--FPEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~--~~~~~  150 (268)
                      .+++++|+||+|++|..+++.+...|++|+++++++++.+.+.+   +.+...   ..|..+.+...+.+.+.  ..+++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999887765442   234432   23444431222222221  12479


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        86 D~lVnnAG   93 (330)
T PRK06139         86 DVWVNNVG   93 (330)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.00084  Score=53.28  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++.+++|+|++|++|..++..+...|++|+++.+++++.+...+.+   +.. .  ..|..+.++....+.+..  -+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999999999999999999999999998877655443222   322 1  224444323333332221  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999874

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.66  E-value=0.00038  Score=57.69  Aligned_cols=79  Identities=14%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe----eeecCC--hhhHHHHHHHHCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE----AFNYKE--EADLNAALKRYFPE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~----v~~~~~--~~~~~~~~~~~~~~  148 (268)
                      .|++++|+||++++|...+..+...|++|+++++++++.+.+.+++    +...    ..|..+  . +..+.+.+..++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~-~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDID-EGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcH-HHHHHHHHHhcC
Confidence            4789999999999999999988889999999999998776554232    1111    234432  2 334445554444


Q ss_pred             -CccEEEeCCC
Q 024411          149 -GIDIYFENVG  158 (268)
Q Consensus       149 -~~d~v~d~~g  158 (268)
                       .+|++++++|
T Consensus       131 ~didilVnnAG  141 (320)
T PLN02780        131 LDVGVLINNVG  141 (320)
T ss_pred             CCccEEEEecC
Confidence             6779999876

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00032  Score=56.44  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+...+++   +.. .  ..|..+.++....+.+..  .+++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999998877654432122   221 1  234444324444444432  2368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        88 D~vi~~ag   95 (264)
T PRK07576         88 DVLVSGAA   95 (264)
T ss_pred             CEEEECCC
Confidence            99998875

>PRK06196 oxidoreductase; Provisional

Probab=97.66  E-value=0.00054  Score=56.65  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=55.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      .+.+++|+||+|++|..++..+...|++|++++++.++.+.+.+++....  ..|..+.++....+.+..  .+++|+++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            46799999999999999999999999999999998877665442332112  234444323333343332  24799999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus       105 ~nAg  108 (315)
T PRK06196        105 NNAG  108 (315)
T ss_pred             ECCC
Confidence            9887

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.0024  Score=51.39  Aligned_cols=83  Identities=20%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-ee-------ecCChhhHHHHHHHHCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AF-------NYKEEADLNAALKRYFP  147 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~-------~~~~~~~~~~~~~~~~~  147 (268)
                      +.++...++|+|++.++|++.+.-++..|++|.++.++.+++..+++.++... +.       |-.+. +-.+.+.+.++
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y-~~v~~~~~~l~  107 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDY-DSVSKVIEELR  107 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccH-HHHHHHHhhhh
Confidence            44566899999999999999999999999999999999999998876666532 11       11112 22333333232


Q ss_pred             ---CCccEEEeCCCh
Q 024411          148 ---EGIDIYFENVGG  159 (268)
Q Consensus       148 ---~~~d~v~d~~g~  159 (268)
                         +.+|.++.|+|.
T Consensus       108 ~~~~~~d~l~~cAG~  122 (331)
T KOG1210|consen  108 DLEGPIDNLFCCAGV  122 (331)
T ss_pred             hccCCcceEEEecCc
Confidence               368999999985

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.0012  Score=52.38  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      ++++++|+||+|++|..++..+...|++|+++.++.+ +.+.+.+   ..+.. .  ..|..+.++....+.+...  ++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999999999999887643 3332221   22321 1  2344443233333333221  36


Q ss_pred             ccEEEeCCChh--------------------hHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENVGGK--------------------LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~g~~--------------------~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+++.++|..                    .++.+.+.+..+|+++.++.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            89988877631                    12334444445678888865

>PRK08017 oxidoreductase; Provisional

Probab=97.64  E-value=0.00048  Score=54.98  Aligned_cols=77  Identities=18%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhH---HHHHHHHCCCCccEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADL---NAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~---~~~~~~~~~~~~d~v~d~  156 (268)
                      ++++|+||+|++|..+++.+...|++|+++.++.++.+.++ ..+... ..|..+.+.+   .+.+.+..++.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN-SLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999999999999999999999999999999988887776 566543 2344443122   223333333568888888


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      .|
T Consensus        82 ag   83 (256)
T PRK08017         82 AG   83 (256)
T ss_pred             CC
Confidence            76

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00044  Score=55.28  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC-Cee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF-DEA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~-~~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++|+||+|++|..++..+...|++|+++++++++.+.+.+.+   +. ..+  .|..+.+++...+.+..  .+.+
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   87 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI   87 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999988766554222   11 122  23333323433333321  2368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        88 d~li~~ag   95 (258)
T PRK06949         88 DILVNNSG   95 (258)
T ss_pred             CEEEECCC
Confidence            99999988

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.63  E-value=0.00025  Score=61.03  Aligned_cols=89  Identities=21%  Similarity=0.274  Sum_probs=62.1

Q ss_pred             cchHHHHHHHhhhhcC---CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChh
Q 024411           61 GMPGMTAYVGFYEVCS---PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEA  136 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~---~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  136 (268)
                      ..+.+.+++++.....   -.++.+++|+|+ |.+|..+++.+...|+ +|+++.+++++...+.+.+|.. +++..   
T Consensus       160 ~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~---  234 (423)
T PRK00045        160 AGAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPLD---  234 (423)
T ss_pred             CCCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeHH---
Confidence            3355666666643322   257789999997 9999999999999998 8999999988866444377753 33321   


Q ss_pred             hHHHHHHHHCCCCccEEEeCCCh
Q 024411          137 DLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus       137 ~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++...+     .++|+|++|++.
T Consensus       235 ~~~~~l-----~~aDvVI~aT~s  252 (423)
T PRK00045        235 ELPEAL-----AEADIVISSTGA  252 (423)
T ss_pred             HHHHHh-----ccCCEEEECCCC
Confidence            332222     258999999986

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00048  Score=55.35  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe----eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE----AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+++++|+||++++|..+++.+...|++|+++++++++.+.+.+++    +...    ..|..+.++..+.+.+..  -+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999887665443222    1111    224444323333333322  24


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|++++++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00041  Score=55.55  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC-----CC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG-----FD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g-----~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+++++|+|+++++|..+++.+...|++|+++++++++.+.+.+++.     .. .  ..|..+.+++...+.+..  .+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999998877655443332     11 1  124433323333333321  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|+++.++|
T Consensus        86 ~id~li~~ag   95 (260)
T PRK07063         86 PLDVLVNNAG   95 (260)
T ss_pred             CCcEEEECCC
Confidence            6999999887

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00054  Score=53.63  Aligned_cols=78  Identities=19%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++++|+|++|++|..++..+...|++|+++++++++.+.+. +++...  ..|..+.+.+...+.....+++|+++.++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-ALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            47999999999999999999999999999998877666555 433222  234444323433343333347999998876


Q ss_pred             h
Q 024411          159 G  159 (268)
Q Consensus       159 ~  159 (268)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            3

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00041  Score=56.70  Aligned_cols=81  Identities=23%  Similarity=0.362  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.+++|+||+|++|..+++.+...|++|++++++.++.+.+.+++   +.. ..  .|..+.++..+.+....  .+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999999999999999999999999999987765554232   222 12  23333313333333221  2368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00045  Score=55.11  Aligned_cols=80  Identities=25%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+|+++++|..+++.+...|++|++++++.++.+.+.+++   +.. .  ..|..+.++..+.+.+..  .+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999887766554333   221 1  234444323333333221  1469


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        88 d~lv~~ag   95 (253)
T PRK05867         88 DIAVCNAG   95 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.60  E-value=9.5e-05  Score=66.09  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC---------------------HHHHHHHHHhcCCCeeeecCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS---------------------KDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~---------------------~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ...++++|+|+|+ |+.|+.+++.++..|++|++++..                     +.+.+.++ ++|++..++...
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~-~~Gv~~~~~~~~  210 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRIL-DLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHH-HCCCEEEeCCEE
Confidence            3678999999998 999999999999999999998742                     34566677 788765555432


Q ss_pred             -hhhH-HHHHHHHCCCCccEEEeCCCh
Q 024411          135 -EADL-NAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus       135 -~~~~-~~~~~~~~~~~~d~v~d~~g~  159 (268)
                       . +. ...+.    .++|++++++|.
T Consensus       211 ~~-~~~~~~~~----~~~D~Vi~AtG~  232 (564)
T PRK12771        211 GE-DITLEQLE----GEFDAVFVAIGA  232 (564)
T ss_pred             CC-cCCHHHHH----hhCCEEEEeeCC
Confidence             1 21 11121    259999999996

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.0007  Score=53.73  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-e--eecCChhhHHH---HHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-A--FNYKEEADLNA---ALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~---~~~~~~~~~~d~  152 (268)
                      ++.+++|+||+|++|..+++.+...|++|+++++++++.+.+.++++... .  .|..+.++...   .+.+. .+++|+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEA-FGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCCE
Confidence            46789999999999999999999999999999988776665553555431 2  23333212222   22222 136899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        84 vi~~ag~   90 (249)
T PRK06500         84 VFINAGV   90 (249)
T ss_pred             EEECCCC
Confidence            9998873

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00049  Score=55.01  Aligned_cols=81  Identities=17%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC---eeeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD---EAFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.+++|+||+|++|..++..+...|++|+++++++.+.+.+.+++   +..   ...|..+.+.+...+.+..  -+.+
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            5678999999999999999999999999999999887665554233   221   1234444323333333321  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        84 d~vi~~ag~   92 (258)
T PRK07890         84 DALVNNAFR   92 (258)
T ss_pred             cEEEECCcc
Confidence            999998863

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.57  E-value=0.0006  Score=54.15  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=55.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CC---eeeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG--FD---EAFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g--~~---~v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+.+.+.+.  ..   ...|..+.+++...+.+..  .+.+|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            35689999999999999999999999999999999887665543332  11   1223333323433333321  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      .++.++|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.0009  Score=55.27  Aligned_cols=81  Identities=16%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----C-CC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----G-FD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g-~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+++++|+||++++|..++..+...|++|++++++.++.+.+.+++    + .. .  ..|..+.++....+.+..  .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999999999999999887655443222    1 11 1  234444323333333322  23


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|++++++|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            68999998873

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.56  E-value=0.0026  Score=47.89  Aligned_cols=90  Identities=23%  Similarity=0.278  Sum_probs=63.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      --.+.+|.|+|. |.+|..+++.++.+|++|++.+++........ ..+.    .+.   ++.+.+.+     .|+++.+
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~~~~----~~~---~l~ell~~-----aDiv~~~   98 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-EFGV----EYV---SLDELLAQ-----ADIVSLH   98 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-HTTE----EES---SHHHHHHH------SEEEE-
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhcc-cccc----eee---ehhhhcch-----hhhhhhh
Confidence            346899999997 99999999999999999999998877655333 3333    111   44545554     7999887


Q ss_pred             CCh-h-----hHHhHHHhhhcCCEEEEEcc
Q 024411          157 VGG-K-----LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g~-~-----~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ... +     .=...+..++++..+|.++-
T Consensus        99 ~plt~~T~~li~~~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred             hccccccceeeeeeeeeccccceEEEeccc
Confidence            763 2     12467888898888888755

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00091  Score=53.64  Aligned_cols=83  Identities=22%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             CCCCcEEEEecCcc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCCee----eecCChhhHHHHHHHHC-
Q 024411           77 PKHGECVFISAASG-AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGFDEA----FNYKEEADLNAALKRYF-  146 (268)
Q Consensus        77 ~~~~~~vlI~ga~g-~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~~~v----~~~~~~~~~~~~~~~~~-  146 (268)
                      +.++++++|+||+| ++|.++++.+...|++|+++++++++.+...++    ++...+    .|..+.+.....+.+.. 
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            44578999999986 899999999999999999999887766544322    343222    24444323333333221 


Q ss_pred             -CCCccEEEeCCCh
Q 024411          147 -PEGIDIYFENVGG  159 (268)
Q Consensus       147 -~~~~d~v~d~~g~  159 (268)
                       .+.+|+++.++|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence             2468999999983

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00062  Score=54.32  Aligned_cols=81  Identities=27%  Similarity=0.352  Sum_probs=54.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++|+||++++|..++..+...|++|+++++++++.+.+.+++   +.. ..  .|..+.+.....+.+..  -+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            3678999999999999999999999999999999888766554232   322 11  24443323333333322  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00079  Score=53.71  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC----eeeecCChhhHHHHHHHHC--CCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD----EAFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++...+... +....    ...|..+.+.+...+.+..  .+++|.
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA-QLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4679999999999999999999999999999998876554444 33221    1234443323333333221  136899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9998873

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00063  Score=53.61  Aligned_cols=81  Identities=19%  Similarity=0.273  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---Cee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---DEA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .+.+++|+||+|++|..+++.+...|++|+++.+++++.+.+.+++..   .+.  .|..+.+++...+.+..  .+++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            468899999999999999999988899999999988776655434431   122  23333324444444322  13699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++++.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99998763

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.54  E-value=0.00087  Score=54.61  Aligned_cols=145  Identities=18%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             CCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHH--HHhhhhcCCCCCcEEEEecCcchHHHHHH
Q 024411           20 FNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAY--VGFYEVCSPKHGECVFISAASGAVGQLVG   97 (268)
Q Consensus        20 ~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~--~~l~~~~~~~~~~~vlI~ga~g~~G~~~i   97 (268)
                      +++|++.+...+|.++...+....+.++|.   +.+-.+.   ...|..  .++..  ...++++||-.|+ |. |..++
T Consensus       106 ~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg---~aFgtG~---h~tt~l~l~~l~~--~~~~g~~VLDvGc-Gs-G~lai  175 (288)
T TIGR00406       106 VQFGKRFWICPSWRDVPSDEDALIIMLDPG---LAFGTGT---HPTTSLCLEWLED--LDLKDKNVIDVGC-GS-GILSI  175 (288)
T ss_pred             EEEcCeEEEECCCcCCCCCCCcEEEEECCC---CcccCCC---CHHHHHHHHHHHh--hcCCCCEEEEeCC-Ch-hHHHH
Confidence            556666666666655433223335555332   2221111   112221  22222  2457899999996 54 77777


Q ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh----hhHHhHHHhh
Q 024411           98 QFAKLLGC-YVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG----KLLDAVLPNM  169 (268)
Q Consensus        98 ~l~~~~g~-~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~----~~~~~~~~~l  169 (268)
                      .+++ +|+ +|++++.++...+.+++..   +....+..... +    ......++||+|+.....    ..+..+.+.|
T Consensus       176 ~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~----~~~~~~~~fDlVvan~~~~~l~~ll~~~~~~L  249 (288)
T TIGR00406       176 AALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-Y----LEQPIEGKADVIVANILAEVIKELYPQFSRLV  249 (288)
T ss_pred             HHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-c----cccccCCCceEEEEecCHHHHHHHHHHHHHHc
Confidence            7665 465 9999999988877776322   22111111111 1    111122479999865443    3456788999


Q ss_pred             hcCCEEEEEcc
Q 024411          170 KIRGRIAACGM  180 (268)
Q Consensus       170 ~~~G~~v~~g~  180 (268)
                      +|+|.++..|.
T Consensus       250 kpgG~li~sgi  260 (288)
T TIGR00406       250 KPGGWLILSGI  260 (288)
T ss_pred             CCCcEEEEEeC
Confidence            99999988765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00088  Score=54.27  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      .+.++||+||+|++|..+++.+...|++|+++++++++.+.+.+..+.. .  ..|..+.+.....+.+...  +.+|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            3568999999999999999999999999999999988776665222221 1  2344443233333333221  368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999874

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.002  Score=51.96  Aligned_cols=78  Identities=14%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC--e--eeecCChhhHHHHHHHHC--CCCccE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD--E--AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~--~--v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +++|+||+|++|..+++.+...|++|+++.+++++.+...++   .+..  .  ..|..+.+.....+.+..  .+++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            689999999999999999999999999999887765443212   2322  1  235554323333233221  136899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999874

>PRK05717 oxidoreductase; Validated

Probab=97.51  E-value=0.001  Score=53.17  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      .+.+++|+|++|++|..++..+...|++|++++++..+.+.+.++++.. .  ..|..+.++....+.+...  +.+|++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   88 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDAL   88 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4678999999999999999999999999999988776555443244432 1  2344443233333333221  368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        89 i~~ag~   94 (255)
T PRK05717         89 VCNAAI   94 (255)
T ss_pred             EECCCc
Confidence            998873

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0012  Score=51.67  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +++|+||+|++|..+++.+...|++|+.+.++.++.+.+.++++... ..|..+.+++...+.+.. +.+|++++++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-hcCcEEEECCC
Confidence            48999999999999999999999999999998887766543554432 235444423333333332 25899998765

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0042  Score=49.14  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-Ce--eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DE--AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+++|+||+|++|..++..+...|++|+++++++++.+.+. +.+. ..  ..|..+.+++.+.+.+. ....|.++.++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~d~~i~~a   79 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH-TQSANIFTLAFDVTDHPGTKAALSQL-PFIPELWIFNA   79 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HhcCCCeEEEeeCCCHHHHHHHHHhc-ccCCCEEEEcC
Confidence            46899999999999988888889999999999988777665 3221 11  23555442444444433 22456666555


Q ss_pred             C
Q 024411          158 G  158 (268)
Q Consensus       158 g  158 (268)
                      |
T Consensus        80 g   80 (240)
T PRK06101         80 G   80 (240)
T ss_pred             c
Confidence            4

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.51  E-value=0.00088  Score=53.46  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++.+++++.+.+.+++   +.. ..  .|..+.+++...+.+..  .+.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999889999999998877655443222   221 11  24444323333333321  2368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00084  Score=53.92  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++.++||+|++|++|..+++.+...|++|+++++++++.+.+.+.+   +.. .  ..|..+.+...+.+.+..  -+++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999999887665543222   221 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        89 d~vi~~Ag   96 (263)
T PRK07814         89 DIVVNNVG   96 (263)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0013  Score=52.64  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=54.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---e--eeecCChhhHHHHHHHHCC--CCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---E--AFNYKEEADLNAALKRYFP--EGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~--v~~~~~~~~~~~~~~~~~~--~~~d~  152 (268)
                      +.+++|+||+|++|..++..+...|++|+++++++++.+.+.+++...   .  ..|..+.++..+.+.+...  +.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            368999999999999999999999999999999888776655333211   1  2344443234333333221  35899


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      ++.++|
T Consensus        82 lv~~ag   87 (257)
T PRK07024         82 VIANAG   87 (257)
T ss_pred             EEECCC
Confidence            999887

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.49  E-value=0.0011  Score=54.98  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---C-e--eeecCChhhHHHHHHHH--CCCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---D-E--AFNYKEEADLNAALKRY--FPEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~-~--v~~~~~~~~~~~~~~~~--~~~~~  150 (268)
                      .+.+++|+||+|++|..+++.+...|++|++++++.++.+.+.+++..   . .  ..|..+.++....+.+.  ..+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999998999999999988876655434421   1 1  23444432333333332  12369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999887

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0015  Score=51.55  Aligned_cols=81  Identities=16%  Similarity=0.248  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC-C---eeeecCC---h--hhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF-D---EAFNYKE---E--ADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~-~---~v~~~~~---~--~~~~~~~~~~~  146 (268)
                      ++++++|+|++|++|..+++.+...|++|+++++++++.+.+.+++   +. .   ...|..+   .  ..+...+....
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999987765543232   21 1   1123321   1  12333444433


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      ++.+|.++.++|.
T Consensus        85 ~~~id~vi~~ag~   97 (239)
T PRK08703         85 QGKLDGIVHCAGY   97 (239)
T ss_pred             CCCCCEEEEeccc
Confidence            3468999998873

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00093  Score=52.58  Aligned_cols=81  Identities=12%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe-eeecCChhhHHHHHHHHC--CCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE-AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +++++||+|++|++|..+++.+...|++|+++++++++.....+++   +... ..|..+.+++...+.+..  .+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            4689999999999999999999989999999998776543322122   2221 234433313333333221  136899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998763

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.47  E-value=0.0064  Score=46.62  Aligned_cols=99  Identities=21%  Similarity=0.314  Sum_probs=67.6

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCC-CeeeecCChhhHHHHHHHHCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKN---KFGF-DEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~---~~g~-~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ...+.++++++-.|+ |. |..++.+++..+  .+|++++.+++..+.+++   .++. +.+.....  +..+.+.. ..
T Consensus        35 ~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~--d~~~~l~~-~~  109 (198)
T PRK00377         35 KLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG--EAPEILFT-IN  109 (198)
T ss_pred             HcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe--chhhhHhh-cC
Confidence            457889999999997 55 999999998764  489999999988776653   3452 32221111  22222222 22


Q ss_pred             CCccEEEeCCCh----hhHHhHHHhhhcCCEEEE
Q 024411          148 EGIDIYFENVGG----KLLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       148 ~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~  177 (268)
                      +.+|.++...+.    ..+..+.+.|+|+|+++.
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            479999975542    457788889999999875

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0009  Score=54.19  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..++..+...|++|++++++.++.+.+.+++   +.. .  ..|..+.+++.+.+.+..  .+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999998877665443232   322 1  224444323333333221  2368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        85 d~li~nAg   92 (275)
T PRK05876         85 DVVFSNAG   92 (275)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0012  Score=52.92  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC-CC-e--eeecCChhhHHHHHHHH---CCCCccEE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG-FD-E--AFNYKEEADLNAALKRY---FPEGIDIY  153 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g-~~-~--v~~~~~~~~~~~~~~~~---~~~~~d~v  153 (268)
                      +++||+||+|++|..+++.+...|++|++++++.++.+.+.+..+ .. .  ..|..+.+.+.+.+.+.   ..+++|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            479999999999999999999999999999999887776653433 11 1  23444432333333332   13479999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            999874

>PRK06194 hypothetical protein; Provisional

Probab=97.46  E-value=0.00098  Score=54.22  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +.++||+||+|++|..++..+...|++|++++++.++.+...+++   +.. ..  .|..+.+++...+.+..  .+.+|
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id   85 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVH   85 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999998876554443232   222 11  23333213333333221  23689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        86 ~vi~~Ag~   93 (287)
T PRK06194         86 LLFNNAGV   93 (287)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0017  Score=50.67  Aligned_cols=78  Identities=19%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++++|+|++|++|..+++.+...|++|++++++.++.+.+. ..+.. ...|..+.+.+...+.+..++++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ-ALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH-hccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            46899999999999999988888999999999888777666 44443 23444444233333333323379999988764

>PRK09186 flagellin modification protein A; Provisional

Probab=97.45  E-value=0.0011  Score=52.81  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC--e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD--E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~--~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      +++++||+||+|++|..++..+...|++|+.+.+++++.+.+.+++    +..  .  ..|..+.+.+...+.+..  -+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999998887765543233    221  1  224444323333333321  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|+++.+++
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6899999885

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.45  E-value=0.0013  Score=52.24  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-H-HHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-K-VDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~-~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..++..+...|++|+++++++. + .+.+. +.+.. .  ..|..+.+++...+.+..  .+++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVE-ALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHH-hcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999998653 1 22233 33432 1  234444324443343322  13699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99998863

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0014  Score=52.42  Aligned_cols=84  Identities=14%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHHHH---hcCC-C-ee--eecCChhhHHHHHHHHC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDK-VDLLKN---KFGF-D-EA--FNYKEEADLNAALKRYF  146 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~-~~~~~~---~~g~-~-~v--~~~~~~~~~~~~~~~~~  146 (268)
                      .+.++.++||+||+|++|..+++-+... |++|+++++++++ .+.+.+   ..+. . +.  .|..+.++..+.+++..
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            3567889999999999999999877766 4899999988764 443321   2232 1 22  34333313333333332


Q ss_pred             C-CCccEEEeCCCh
Q 024411          147 P-EGIDIYFENVGG  159 (268)
Q Consensus       147 ~-~~~d~v~d~~g~  159 (268)
                      . +.+|+++.++|.
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            2 479998887763

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.44  E-value=0.0015  Score=51.95  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      +++|+|++|++|..++..+...|++|+++++++++.+.+.+.++.. .  ..|..+.+++...+.+..  .+++|.++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899999999999999999999999999999988776665344432 1  224443323333333322  1369999988


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        82 ag~   84 (248)
T PRK10538         82 AGL   84 (248)
T ss_pred             CCc
Confidence            763

>PRK06484 short chain dehydrogenase; Validated

Probab=97.43  E-value=0.0012  Score=58.63  Aligned_cols=81  Identities=21%  Similarity=0.323  Sum_probs=58.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .+++++|+|+++++|..+++.+...|++|++++++.++.+.+.++++...   ..|..+.+++...+.+..  .+.+|++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVL   83 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999999999999998888766654565432   234444323433333322  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        84 i~nag~   89 (520)
T PRK06484         84 VNNAGV   89 (520)
T ss_pred             EECCCc
Confidence            998863

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.43  E-value=0.0021  Score=54.45  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHH
Q 024411           64 GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALK  143 (268)
Q Consensus        64 ~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  143 (268)
                      -...+..+.....++++++||-+|+  |.|..+..+++..|++|++++.+++..+.+++.. ....+..... ++.    
T Consensus       152 q~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~-~~l~v~~~~~-D~~----  223 (383)
T PRK11705        152 QEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC-AGLPVEIRLQ-DYR----  223 (383)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-ccCeEEEEEC-chh----
Confidence            3444455555667899999999996  5688888999988999999999999999888333 2111222111 221    


Q ss_pred             HHCCCCccEEEe-----CCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          144 RYFPEGIDIYFE-----NVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       144 ~~~~~~~d~v~d-----~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +. .+.+|.|+.     .+|.    ..+..+.+.|+|+|.++...
T Consensus       224 ~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        224 DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            11 346998864     3342    35678888999999988753

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.001  Score=52.96  Aligned_cols=79  Identities=18%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-eee--ecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EAF--NYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++++|+|++|++|..+++.+...|++|+++++++++.+.+.+.+   +.. ..+  |..+.+.....+.+..  .+.+|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            468999999999999999999999999999998887665543222   221 222  4333323333333322  13689


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        81 ~lI~~ag   87 (252)
T PRK07677         81 ALINNAA   87 (252)
T ss_pred             EEEECCC
Confidence            9999887

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0015  Score=52.82  Aligned_cols=79  Identities=25%  Similarity=0.318  Sum_probs=54.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++||+||+|++|..+++.+...|++|+++.+++++.+.+.+..+.. .  ..|..+.+.+...+.+..  .+++|+++.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57999999999999999999999999999999988777665333322 1  234444323333333321  136899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        83 ~ag~   86 (276)
T PRK06482         83 NAGY   86 (276)
T ss_pred             CCCC
Confidence            8873

>PLN02253 xanthoxin dehydrogenase

Probab=97.42  E-value=0.0015  Score=52.91  Aligned_cols=81  Identities=16%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++..   .  ..|..+.+...+.+.+..  -+++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999999999999999999889999999998776655444344321   1  234444323333333221  13699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        97 ~li~~Ag~  104 (280)
T PLN02253         97 IMVNNAGL  104 (280)
T ss_pred             EEEECCCc
Confidence            99998873

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.42  E-value=0.0016  Score=52.06  Aligned_cols=80  Identities=19%  Similarity=0.283  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+|++|++|..++..+...|++|++++++.++.+.+.++++.. .  ..|..+.+.....+.+..  .+.+|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3578999999999999999999999999999999888776655344422 1  223333313333333221  1368999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.++|
T Consensus        85 i~~ag   89 (257)
T PRK07067         85 FNNAA   89 (257)
T ss_pred             EECCC
Confidence            98876

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.40  E-value=0.0013  Score=52.58  Aligned_cols=78  Identities=24%  Similarity=0.284  Sum_probs=53.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCee--eecCChhhHHHHHHHHC--CCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDEA--FNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~v--~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      ++||+|+++++|..+++.+...|++|+++++++++.+.+.+++   +....  .|..+.++..+.+.+..  .+++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999999999999999887665543232   22222  34433323333333322  24699999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +++|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            98873

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0011  Score=54.45  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+++++|+||+|++|..+++.+...|++|++++++.++.+.+.+++     +.. .  ..|..+.++....+.+..  .+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            5689999999999999999988889999999999877654432122     111 1  224444323333333332  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|+++.++|
T Consensus        95 ~iD~li~nAg  104 (306)
T PRK06197         95 RIDLLINNAG  104 (306)
T ss_pred             CCCEEEECCc
Confidence            6999999887

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.40  E-value=0.033  Score=45.08  Aligned_cols=168  Identities=15%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             EEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC----CCee-------e-ecCChhhHHHHHHHHCCC-
Q 024411           83 VFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFG----FDEA-------F-NYKEEADLNAALKRYFPE-  148 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g----~~~v-------~-~~~~~~~~~~~~~~~~~~-  148 (268)
                      |||+||+|++|..+++-+...+. +++++++++.++-.+++++.    ...+       + |.+    -.+.+.+.... 
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvr----d~~~l~~~~~~~   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVR----DKERLNRIFEEY   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCC----HHHHHHHHTT--
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeeccc----CHHHHHHHHhhc
Confidence            79999999999998888888886 89999999988777765662    1111       1 222    23355555555 


Q ss_pred             CccEEEeCCChhh------------------HHhHHHhhhcCC--EEEEEccccccc-CCCCccccchHHH----Hhc--
Q 024411          149 GIDIYFENVGGKL------------------LDAVLPNMKIRG--RIAACGMISQYN-LDKPEGVHNLMYL----VSK--  201 (268)
Q Consensus       149 ~~d~v~d~~g~~~------------------~~~~~~~l~~~G--~~v~~g~~~~~~-~~~~~~~~~~~~~----~~~--  201 (268)
                      ++|+||.++.-+.                  ....++.....|  +++.++..--.+ .+.........+.    ...  
T Consensus        77 ~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmGatKrlaE~l~~~~~~~~  156 (293)
T PF02719_consen   77 KPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMGATKRLAEKLVQAANQYS  156 (293)
T ss_dssp             T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHHHHHHHHHHHHHHHCCTS
T ss_pred             CCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHHHHHHHHHHHHHHHhhhC
Confidence            8999999886432                  223334444444  677765421000 0000000001111    111  


Q ss_pred             ---ceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhc--ccccHHHHHHHHH
Q 024411          202 ---RLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE--GLESAPAALIGLF  254 (268)
Q Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~--~~~~~~~a~~~~~  254 (268)
                         ...+...+.+++.......+....+++++|.--+..+..+  -|=.++||.+...
T Consensus       157 ~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl  214 (293)
T PF02719_consen  157 GNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLVL  214 (293)
T ss_dssp             SSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHHHHHH
T ss_pred             CCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHHHHHH
Confidence               2356666777765555677888888888884433333222  2556677766554

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.40  E-value=0.0015  Score=52.35  Aligned_cols=81  Identities=22%  Similarity=0.343  Sum_probs=54.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.+.+   +.. .  ..|..+.+.+...+.+...  +.+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999999999999999999887765554222   221 1  2344443233333332211  368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        91 d~vi~~ag~   99 (259)
T PRK08213         91 DILVNNAGA   99 (259)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0016  Score=51.55  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ...++++|+|++|++|..++..+...|++|+++++++++.+.+.+..   +.. .  ..|..+.+.+...+.+..  .+.
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            34578999999999999999999999999999999887665543222   221 1  223333323333333321  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0017  Score=51.79  Aligned_cols=75  Identities=16%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHCCCCccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      +.++||+||+|++|..+++.+...|++|+++++++.+...+.+   ..+.. .  ..|..+. .   .+.....+++|++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~---~~~~~~~~~id~v   77 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDA-I---DRAQAAEWDVDVL   77 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCH-H---HHHHHhcCCCCEE
Confidence            3579999999999999999999999999999988776555432   12222 1  2344432 1   2333223479999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.++|
T Consensus        78 i~~ag   82 (257)
T PRK09291         78 LNNAG   82 (257)
T ss_pred             EECCC
Confidence            99887

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0018  Score=51.95  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CC-Cee--eecCChhhHHHHHHHHC-CCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--GF-DEA--FNYKEEADLNAALKRYF-PEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--g~-~~v--~~~~~~~~~~~~~~~~~-~~~~d~  152 (268)
                      ++.++||+||+|++|..++..+...|++|+++++++++.+.+.+++  +. ...  .|..+.+.....+.... .+.+|.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999999999999999999999999999999988776665343  11 112  23333212222222211 247899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9998874

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=97.38  E-value=0.0086  Score=47.38  Aligned_cols=174  Identities=20%  Similarity=0.196  Sum_probs=98.2

Q ss_pred             cCc--chHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHhcCCCe-eeecCChhh---HHHHHHHHCCCCccEEEeC
Q 024411           87 AAS--GAVGQLVGQFAKLLGCYVVGSAGSKDK----VDLLKNKFGFDE-AFNYKEEAD---LNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        87 ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~~----~~~~~~~~g~~~-v~~~~~~~~---~~~~~~~~~~~~~d~v~d~  156 (268)
                      |++  +++|.++++.+...|++|+++.++.++    .+.+.++.+... ..|..++++   +.+.+.+..+|.+|+++++
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~   80 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN   80 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence            445  899999999999999999999999987    444443555431 234433322   3333444443679999887


Q ss_pred             CCh--h----------------------------hHHhHHHhhhcCCEEEEEcccccccCCCCccccc------------
Q 024411          157 VGG--K----------------------------LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN------------  194 (268)
Q Consensus       157 ~g~--~----------------------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~------------  194 (268)
                      ++.  .                            ..+.+.+.++++|.++.++...............            
T Consensus        81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~~l~r~  160 (241)
T PF13561_consen   81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALEGLTRS  160 (241)
T ss_dssp             EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHHHHHHH
Confidence            653  1                            0344566788899999887654322111000000            


Q ss_pred             -hHHHHh-cceeeeeEEecccccchHHHH---HHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCC---ccceEE
Q 024411          195 -LMYLVS-KRLRMEGFIVLDHYHLYPKFL---EMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQ---NVGKQV  263 (268)
Q Consensus       195 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~---~~gkvv  263 (268)
                       -..+-. +++++.....+.......+.+   ++..+.+.+.   .+..+....+|+.++..+|.+..   ..|.++
T Consensus       161 lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~---~pl~r~~~~~evA~~v~fL~s~~a~~itG~~i  234 (241)
T PF13561_consen  161 LAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKR---IPLGRLGTPEEVANAVLFLASDAASYITGQVI  234 (241)
T ss_dssp             HHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHH---STTSSHBEHHHHHHHHHHHHSGGGTTGTSEEE
T ss_pred             HHHHhccccCeeeeeecccceeccchhccccccchhhhhhhh---hccCCCcCHHHHHHHHHHHhCccccCccCCeE
Confidence             011224 577777777655533222222   3333333221   11223345778999988887633   556443

...

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.38  E-value=0.0014  Score=52.06  Aligned_cols=80  Identities=15%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      +++++||+|++|++|+.+++.+...|++|++++++.++.+.+.++   .+.. .  ..|..+.+...+.+.....  +.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999999999887765544322   2332 1  2233332133333333221  368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |.++.++|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06128 oxidoreductase; Provisional

Probab=97.38  E-value=0.0037  Score=51.28  Aligned_cols=104  Identities=21%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHH----HHHHhcCCCe-e--eecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD--KVD----LLKNKFGFDE-A--FNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~--~~~----~~~~~~g~~~-v--~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||+|++|..++..+...|++|+++.++.+  +.+    .++ ..+... .  .|..+.+...+.+.+..  .
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ-AEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999998875432  222    222 334321 1  23333313333333221  2


Q ss_pred             CCccEEEeCCChh---------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          148 EGIDIYFENVGGK---------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       148 ~~~d~v~d~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +++|+++.++|..                           .++.+++.+..+|+++.++....
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~  195 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQS  195 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccc
Confidence            3699999988731                           02233444556789988876543

>PRK08589 short chain dehydrogenase; Validated

Probab=97.38  E-value=0.0014  Score=52.94  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=52.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +++++||+||++++|..+++.+...|++|++++++ ++.+.+.+++   +.. .  ..|..+.++....+.+..  .+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            46799999999999999999999999999999988 4433322132   221 1  234444323333333322  2368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.37  E-value=0.0017  Score=51.11  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCCe-eeecCChhhHHHHHHHHCC--CCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV-DLLKNKFGFDE-AFNYKEEADLNAALKRYFP--EGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~-~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~--~~~d~v~d  155 (268)
                      ++++||+||++++|..+++.+...|++|+++++++++. +.++ ..+... ..|..+.++....+.+...  +++|+++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR-QAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH-HcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            46899999999999999999999999999999876543 3333 444321 2343333233333333322  36899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            8873

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0027  Score=53.27  Aligned_cols=93  Identities=17%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC---C-CeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFG---F-DEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g---~-~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+|||+|+ |++|+.+++.+...+ .+|++++++.++.+.+. ...   . ...+|-.+.+.+.+-++     ++|+||+
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~-~~~~~~v~~~~vD~~d~~al~~li~-----~~d~VIn   74 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA-ELIGGKVEALQVDAADVDALVALIK-----DFDLVIN   74 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hhccccceeEEecccChHHHHHHHh-----cCCEEEE
Confidence            47899998 999999999988888 79999999999988886 442   2 12445544323334443     3699999


Q ss_pred             CCChhhHHhHHH-hhhcCCEEEEEcc
Q 024411          156 NVGGKLLDAVLP-NMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~~~~~~-~l~~~G~~v~~g~  180 (268)
                      +.....-..+++ +++.+=.++.+..
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts~  100 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTSY  100 (389)
T ss_pred             eCCchhhHHHHHHHHHhCCCEEEccc
Confidence            999854445554 4555556666644

>PRK08643 acetoin reductase; Validated

Probab=97.37  E-value=0.0012  Score=52.61  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++++|+|++|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+.+.+.+.+..  .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999999999998877655443222   221 1  124444323333333322  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99998863

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.37  E-value=0.0015  Score=52.10  Aligned_cols=81  Identities=21%  Similarity=0.356  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+.+.+++++.+.+.+++   +.. ..  .|..+.+.+...+.+..  .+.+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999998877655443232   221 11  24444323333333321  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999998873

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=97.37  E-value=0.0096  Score=48.01  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----CeeeecCChh---hHHHHHHHHCCC-
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF----DEAFNYKEEA---DLNAALKRYFPE-  148 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~---~~~~~~~~~~~~-  148 (268)
                      ..+++-|+|+|+.+|.|..++.-+...|.+|++.+-.++..+.++.+...    +-.+|..+++   ...+.+++..++ 
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            45677899999999999999999999999999999887776766633311    1134555432   344555566665 


Q ss_pred             CccEEEeCCCh---------------------------hhHHhHHHhhhc-CCEEEEEcccccc
Q 024411          149 GIDIYFENVGG---------------------------KLLDAVLPNMKI-RGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~---------------------------~~~~~~~~~l~~-~G~~v~~g~~~~~  184 (268)
                      +.--+++++|-                           +.....+.++++ .||+|.+++..+.
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR  169 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR  169 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC
Confidence            77778888871                           113344555665 7999999887664

>PRK09242 tropinone reductase; Provisional

Probab=97.37  E-value=0.0015  Score=52.17  Aligned_cols=81  Identities=23%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+++++|+|++|++|..+++.+...|++|++++++.++.+.+.+++     +.. .  ..|..+.++....+.+..  .+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999887665544232     111 1  124433313333333221  23


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|+++.++|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.36  E-value=0.0018  Score=52.43  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++.++|+||+  +++|.++++.+...|++|+++.++.+   +.+.+.++++...  ..|..+.+.....+.+..  .+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46899999996  79999999999999999999988742   3333332444322  234544323333333332  247


Q ss_pred             ccEEEeCCCh-h-----------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          150 IDIYFENVGG-K-----------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~-~-----------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +|++++++|. .                             ..+..++.+..+|+++.++...+
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~  147 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGG  147 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCC
Confidence            9999999873 1                             02345556667799998876543

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0017  Score=51.58  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++++|+||+|++|..+++.+...|++|+++.+++++.+.+.+.+     +.. .  ..|..+.+.+.+.+.+..  -++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999888888999999999887765543221     111 1  234444323333333322  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|+++.++|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            899999887

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0015  Score=51.98  Aligned_cols=80  Identities=16%  Similarity=0.211  Sum_probs=52.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.+++|+|++|++|..+++.+...|++|+++.+++++.+.+.+.+   +.. .  ..|..+.+.....+.+..  .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999889999999998876554433222   211 1  234443312332222221  1368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++|.++|
T Consensus        85 d~vi~~ag   92 (250)
T PRK07774         85 DYLVNNAA   92 (250)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0015  Score=52.94  Aligned_cols=79  Identities=15%  Similarity=0.270  Sum_probs=53.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---e--eeecCChhhHHHHHHHHC--CCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++||+||+|++|..++..+...|++|+++++++++.+.+.+.   .+..   .  ..|..+.+++.. +.+..  -++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCC
Confidence            56899999999999999999999999999999888766554322   2211   1  224444323333 44332  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999998873

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=97.35  E-value=0.0015  Score=52.59  Aligned_cols=82  Identities=20%  Similarity=0.333  Sum_probs=57.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC------eeeecCCh---hhHHHHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD------EAFNYKEE---ADLNAALKRY  145 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~------~v~~~~~~---~~~~~~~~~~  145 (268)
                      -.++.+||+|++.++|.+++..+...|++|+++.+++++.+...+.+   +..      .+.|....   +.+.....+.
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999988765544232   221      12233332   1233333344


Q ss_pred             CCCCccEEEeCCCh
Q 024411          146 FPEGIDIYFENVGG  159 (268)
Q Consensus       146 ~~~~~d~v~d~~g~  159 (268)
                      ..|+.|++++.+|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence            35689999998874

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0023  Score=51.20  Aligned_cols=79  Identities=23%  Similarity=0.339  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-ee--eecCChhhHHHHHHHHCCCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-EA--FNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+++++|+|+++++|..+++.+...|++|+++++++++.+.+.+++    +.. ..  .|..+.++....+...  +.+|
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--g~id   83 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEA--GDID   83 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHh--CCCC
Confidence            4689999999999999999999999999999999887665543222    221 12  3444332333333322  4699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      .++.++|.
T Consensus        84 ~lv~~ag~   91 (259)
T PRK06125         84 ILVNNAGA   91 (259)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0024  Score=51.66  Aligned_cols=80  Identities=25%  Similarity=0.250  Sum_probs=54.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHC--CCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      +.++||+||+|++|..+++.+...|++|++++++.++.+.+.+..+.. ..  .|..+.+++...+....  -+++|.++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999999999889999999999888776655333322 12  23333323333333221  13689999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .++|.
T Consensus        83 ~~ag~   87 (275)
T PRK08263         83 NNAGY   87 (275)
T ss_pred             ECCCC
Confidence            99874

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0017  Score=51.71  Aligned_cols=80  Identities=20%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      ++.+++|+||+|++|..+++.+...|++|+.++++.++.+.+.+++   +.. ..  .|..+.++....+.+...  +.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999999999999999999999999998877655544232   221 11  233332133333332211  358


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        87 d~li~~ag   94 (252)
T PRK07035         87 DILVNNAA   94 (252)
T ss_pred             CEEEECCC
Confidence            99998887

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0017  Score=50.99  Aligned_cols=80  Identities=10%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHH---HCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKR---YFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~---~~~~~  149 (268)
                      ++++++|+|+++++|.+++.-+...|++|+++.++.++.+.+.++   .+.. .  ..|..+.++....+.+   ..++.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            467999999999999999999999999999999988876554322   2332 1  1233333233333333   22226


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0015  Score=51.87  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CCC-ee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--GFD-EA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++.+++|+||+|++|..+++.+...|++|+.++++.++.+...+..  +.. ..  .|..+.+...+.+.+..  .+.+|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4578999999999999999988888999999999887655444233  221 12  24333323333333322  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        84 ~vi~~ag~   91 (252)
T PRK06138         84 VLVNNAGF   91 (252)
T ss_pred             EEEECCCC
Confidence            99998873

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.31  E-value=0.00088  Score=53.95  Aligned_cols=101  Identities=21%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHC
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      .+...+++++|++||-+|+  |-|..++.+++..|++|++++.|++..+.+++   +.|....+..... ++    ++. 
T Consensus        53 ~~~~~~~l~~G~~vLDiGc--GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-D~----~~~-  124 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGC--GWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-DY----RDL-  124 (273)
T ss_dssp             HHHTTTT--TT-EEEEES---TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES--G----GG--
T ss_pred             HHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-ec----ccc-
Confidence            3446678999999999996  47888999999999999999999998877653   3454321111111 21    111 


Q ss_pred             CCCccEEEe-----CCCh----hhHHhHHHhhhcCCEEEEE
Q 024411          147 PEGIDIYFE-----NVGG----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       147 ~~~~d~v~d-----~~g~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      .+.||.|+.     .+|.    ..+..+.+.|+|+|++++-
T Consensus       125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            126888753     5553    3467888999999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.31  E-value=0.0024  Score=51.60  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDKV---DLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~~---~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++.+||+||++  ++|.++++.+...|++|+++.++++..   +.+.++.+...  ..|..+.++....+.+..  .|.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            568999999986  999999999999999999988765322   22322344322  234444323333333322  147


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        86 iD~lVnnAG   94 (271)
T PRK06505         86 LDFVVHAIG   94 (271)
T ss_pred             CCEEEECCc
Confidence            999999887

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0013  Score=53.00  Aligned_cols=78  Identities=18%  Similarity=0.362  Sum_probs=53.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .+++++|+||+|++|..+++.+...|++|++++++.++.+...   +... ..|..+.+++...+.+..  .+.+|++++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP---GVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC---CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3568999999999999999999999999999998866543221   2221 234444324444443322  236899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9884

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0025  Score=51.55  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC-----CC-ee--eecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG-----FD-EA--FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g-----~~-~v--~~~~~~~~~~~~~~~~~--~~  148 (268)
                      ++.++||+|++|++|..+++.+...|++|+++++++++.+...+++.     .. ..  .|..+.+.....+.+..  .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999999999988776544332221     11 12  24433323333333322  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|+++.++|
T Consensus        86 ~~d~li~~ag   95 (276)
T PRK05875         86 RLHGVVHCAG   95 (276)
T ss_pred             CCCEEEECCC
Confidence            6899999887

>PRK06720 hypothetical protein; Provisional

Probab=97.30  E-value=0.0025  Score=47.56  Aligned_cols=81  Identities=14%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+..++|+||++++|..++..+...|++|+++.++.+..+...+++   +.. ..  .|....+.+.+.+.+..  .+.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5679999999999999999999889999999998876554332122   322 12  23333213333222211  2468


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        95 DilVnnAG~  103 (169)
T PRK06720         95 DMLFQNAGL  103 (169)
T ss_pred             CEEEECCCc
Confidence            999988873

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.29  E-value=0.015  Score=42.62  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             HHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHH
Q 024411           67 AYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        67 a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      .+.++.+..+ +-.|++++|.|= |-+|...++.++.+|++|+++...+-+.-++. .-|.. +.      .+.+.+   
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~-v~------~~~~a~---   76 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFE-VM------TLEEAL---   76 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-E-EE-------HHHHT---
T ss_pred             HHHHHHhcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcE-ec------CHHHHH---
Confidence            3344443333 467899999995 99999999999999999999998887666655 44442 22      222222   


Q ss_pred             CCCCccEEEeCCChhh--HHhHHHhhhcCCEEEEEcc
Q 024411          146 FPEGIDIYFENVGGKL--LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 ~~~~~d~v~d~~g~~~--~~~~~~~l~~~G~~v~~g~  180 (268)
                        ...|+++.++|+..  -.+-++.|+.+..+..+|.
T Consensus        77 --~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh  111 (162)
T PF00670_consen   77 --RDADIFVTATGNKDVITGEHFRQMKDGAILANAGH  111 (162)
T ss_dssp             --TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS
T ss_pred             --hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCc
Confidence              24899999999844  3577888888887777765

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0022  Score=51.42  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHCC--CCccE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYFP--EGIDI  152 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d~  152 (268)
                      .++||+||+|++|..+++.+...|++|+++++++.+.+.+.+.   .+.. .  ..|..+.+.+...+.+...  +++|+
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   81 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDI   81 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999999999999987765443322   2322 1  2233333233333333221  36899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        82 vi~~ag~   88 (263)
T PRK06181         82 LVNNAGI   88 (263)
T ss_pred             EEECCCc
Confidence            9999873

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0019  Score=51.43  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++|+||+|++|..+++.+...|++|+++++++++.+.+.+   +.+.. ..  .|..+.+++...+.+..  .+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999998999999999998876544332   22322 12  23333212333222221  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.003  Score=50.42  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC--e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~--~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +++++|+||+|++|..++..+...|++|++++++.++.+.+.+.+...  .  ..|..+.+.+...+.+..  .+++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999999999999999998889999999999887766554233211  1  234433323333333321  1368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999873

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.28  E-value=0.0029  Score=49.97  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe-e--eecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDE-A--FNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      ++.++||+|++|++|..+++.+...|.+|+++.+++++.+...+   ..+... .  .|..+.+.+...+.+...  +.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            34689999999999999999999999999999998876554432   223221 1  244443233333333211  368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999998864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.28  E-value=0.0083  Score=45.85  Aligned_cols=77  Identities=21%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC----CCe-eeecCChhhHHHHHHHHCCCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG----FDE-AFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g----~~~-v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      ++.+++|+|++|++|..++..+...|++|+++.++.++.+.+.+.+.    ... ..+..+.++..+.+.     ++|++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~diV  101 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK-----GADVV  101 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh-----cCCEE
Confidence            56789999999999999999888889999999999887766553332    221 122222112333332     48999


Q ss_pred             EeCCChh
Q 024411          154 FENVGGK  160 (268)
Q Consensus       154 ~d~~g~~  160 (268)
                      +.++...
T Consensus       102 i~at~~g  108 (194)
T cd01078         102 FAAGAAG  108 (194)
T ss_pred             EECCCCC
Confidence            9988753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.26  E-value=0.0021  Score=50.67  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.+++|+|++|++|..++..+...|++|+++++++++.+...+++   +.. .+  .|..+.+.+...+++..  .+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3578999999999999999998899999999999877654432122   221 11  23333323444444322  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999998874

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=97.26  E-value=0.011  Score=41.66  Aligned_cols=93  Identities=19%  Similarity=0.220  Sum_probs=58.1

Q ss_pred             EEEecCcchHHHHHHHHHHHcC--CEEEEEeC--CHHHH-HHHHHhcCCCeeeecCChhhHHHHHH--------------
Q 024411           83 VFISAASGAVGQLVGQFAKLLG--CYVVGSAG--SKDKV-DLLKNKFGFDEAFNYKEEADLNAALK--------------  143 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~--~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~--------------  143 (268)
                      |.|+|+||++|..++++.+.+.  ++|+....  +-+++ ++++ ++.+..+.-.++  .....++              
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~-~f~p~~v~i~~~--~~~~~l~~~~~~~~~~~~v~~   77 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAR-EFKPKYVVIADE--EAYEELKKALPSKGPGIEVLS   77 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHH-HHT-SEEEESSH--HHHHHHHHHHHHTTSSSEEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHH-HhCCCEEEEcCH--HHHHHHHHHhhhcCCCCEEEe
Confidence            5799999999999999999997  58887763  22333 3344 777776654443  2222222              


Q ss_pred             ------HHCC-CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          144 ------RYFP-EGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       144 ------~~~~-~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                            +... ..+|+++.+..+ ..+.-.+..++.+-++.+.
T Consensus        78 G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA  120 (129)
T PF02670_consen   78 GPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA  120 (129)
T ss_dssp             SHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred             ChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence                  2222 268888887665 7778888888877665543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.26  E-value=0.0023  Score=51.23  Aligned_cols=81  Identities=17%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe-e--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE-A--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++.++||+|++|++|..+++.+...|++|+++.+++++.+.+.++   .+... .  .|..+.+...+.+.+..  .+.+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999988665444322   33321 1  23333312333222221  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999998873

>PRK07985 oxidoreductase; Provisional

Probab=97.26  E-value=0.0045  Score=50.62  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHH---hcCCC---eeeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLKN---KFGFD---EAFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||++++|..+++.+...|++|+++.++.  ++.+.+.+   +.+..   ...|..+.+.....+.+..  .+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  127 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG  127 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            567899999999999999999999999999876542  23333321   22322   1224444323333333322  23


Q ss_pred             CccEEEeCCCh-h--------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          149 GIDIYFENVGG-K--------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       149 ~~d~v~d~~g~-~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ++|+++.++|. .                          .++.+++.++.+|+++.++....
T Consensus       128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~  189 (294)
T PRK07985        128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQA  189 (294)
T ss_pred             CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchh
Confidence            68999988763 1                          02334445556789998876543

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0031  Score=50.16  Aligned_cols=74  Identities=24%  Similarity=0.366  Sum_probs=49.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+++++|+||+|++|..+++.+...|++|+++++++ +..+...  .+...  ..|..+. +   .+.+.. +.+|++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~--~~~~~~~~~D~~~~-~---~~~~~~-~~iDilVn   85 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND--ESPNEWIKWECGKE-E---SLDKQL-ASLDVLIL   85 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc--cCCCeEEEeeCCCH-H---HHHHhc-CCCCEEEE
Confidence            357899999999999999999999999999999876 2222211  11112  2344332 1   222222 36999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        86 nAG~   89 (245)
T PRK12367         86 NHGI   89 (245)
T ss_pred             CCcc
Confidence            9874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.25  E-value=0.0023  Score=51.12  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC--e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~--~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++|+||+  +++|.++++.+...|++|+++.++++..+.+. ++...  .  ..|..+.++..+.+.+..  .+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ-KLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH-hhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999998  79999999999999999999988744333333 33221  1  234444323333333322  1469


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        85 D~lv~nAg   92 (252)
T PRK06079         85 DGIVHAIA   92 (252)
T ss_pred             CEEEEccc
Confidence            99999887

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.25  E-value=0.003  Score=50.35  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK--VDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~--~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++++||+||++++|.++++.+...|++|+++.++...  .+.++ +.+.. .  ..|..+.++..+.+.+..  .+++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVE-ALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999988765432  12222 34432 1  234444423333333321  23699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        86 ~lv~~ag~   93 (251)
T PRK12481         86 ILINNAGI   93 (251)
T ss_pred             EEEECCCc
Confidence            99998873

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.25  E-value=0.0033  Score=50.14  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.++||+|++|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+++...+.+..  .+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999999999999999889999999999887655443222   322 1  224444323333333221  1368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        83 d~vi~~a~   90 (258)
T PRK12429         83 DILVNNAG   90 (258)
T ss_pred             CEEEECCC
Confidence            99999886

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.24  E-value=0.0035  Score=49.52  Aligned_cols=81  Identities=22%  Similarity=0.349  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      ++.+++|+||+|++|..++..+...|+.|+...++.++.+.+.+..+.. ..  .|..+.+.+...+.+..  .+++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999999999999999999999999998888877766554244432 12  23333313333333221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        85 i~~ag~   90 (245)
T PRK12936         85 VNNAGI   90 (245)
T ss_pred             EECCCC
Confidence            999873

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0059  Score=48.61  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHhc---CCC-ee--eecCChh---hHHHHHHH----
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKNKF---GFD-EA--FNYKEEA---DLNAALKR----  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~~~---g~~-~v--~~~~~~~---~~~~~~~~----  144 (268)
                      .+++++|+|+++++|..+++.+...|++|++.. +++++.+...+++   +.. ..  .|..+.+   .+.+.+.+    
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            467999999999999999999999999998874 4445443322122   221 11  2222211   22222322    


Q ss_pred             HCC-CCccEEEeCCCh-h---h----------------------HHhHHHhhhcCCEEEEEccccc
Q 024411          145 YFP-EGIDIYFENVGG-K---L----------------------LDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       145 ~~~-~~~d~v~d~~g~-~---~----------------------~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ..+ +++|++++++|. .   .                      .+.+++.+...|+++.+++...
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~  148 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  148 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccc
Confidence            112 269999998873 1   0                      1234555566789999887654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.00055  Score=59.55  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             hcCCCCCcEEE----EecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCC
Q 024411           74 VCSPKHGECVF----ISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        74 ~~~~~~~~~vl----I~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      +.++++++.+|    |+||+|++|.+++|+++..|++|+.+.+++.+....+ ..+.. .+++.+.. .+.+.+...   
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~l~~~---  102 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGW-GDRFGALVFDATGI-TDPADLKAL---  102 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCc-CCcccEEEEECCCC-CCHHHHHHH---
Confidence            45778899988    9999999999999999999999999886655333222 23333 34555443 233333221   


Q ss_pred             CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccc
Q 024411          149 GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       149 ~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                                ...+...++.+.++|+++.++...
T Consensus       103 ----------~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261        103 ----------YEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             ----------HHHHHHHHHhccCCCEEEEEcccc
Confidence                      023455667777788888877643

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.23  E-value=0.0025  Score=51.55  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+++++|+||+|++|..++..+...|++|+++.+++++.+.+.+++   +.. .  ..|..+.+.....+.+..  -+.+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999999999999999999999999998877655443232   221 1  223333312333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.22  E-value=0.0029  Score=50.63  Aligned_cols=79  Identities=24%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC---eeeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD---EAFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++...+... ++   +..   ...|..+.++....+.+..  .+.+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAA-ELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHH-HHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999998754322222 22   322   1234444323333333322  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        86 d~lv~nAg   93 (260)
T PRK12823         86 DVLINNVG   93 (260)
T ss_pred             eEEEECCc
Confidence            99999887

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0019  Score=51.62  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--hcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN--KFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~--~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++.++||+||+|++|..+++.+...|++|+++++++++.+...+  +.+.. .  ..|..+.+++...+.+..  .+++|
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   85 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID   85 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999999999988776533330  22322 1  234444323333333322  13689


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      +++.++|
T Consensus        86 ~vi~~ag   92 (258)
T PRK08628         86 GLVNNAG   92 (258)
T ss_pred             EEEECCc
Confidence            9999988

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0035  Score=50.36  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=70.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      +.+++ |.|+|+ |-+|.-++.+|.-+|++|.+.+.+.++++.+.+.++-. ++. +.....+.+.+.     +.|+++.
T Consensus       166 V~~~k-v~iiGG-GvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~-~st~~~iee~v~-----~aDlvIg  237 (371)
T COG0686         166 VLPAK-VVVLGG-GVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL-YSTPSNIEEAVK-----KADLVIG  237 (371)
T ss_pred             CCCcc-EEEECC-ccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE-EcCHHHHHHHhh-----hccEEEE
Confidence            34444 667786 99999999999999999999999999999988556554 233 222224444444     3888887


Q ss_pred             CC---Ch----hhHHhHHHhhhcCCEEEEEccc
Q 024411          156 NV---GG----KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       156 ~~---g~----~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      ++   |.    -..++..+.|+|++.++.+.-.
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVAiD  270 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVAID  270 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCCcEEEEEEEc
Confidence            54   22    2467889999999999988653

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0064  Score=49.66  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCCe-e--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKN---KFGFDE-A--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~---~~g~~~-v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++.++||+||+|++|..++..+...|++|+++.++.. ..+.+.+   ..+... .  .|..+.+.+...+.+..  .+.
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~  124 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR  124 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999889999999887643 2222211   223221 1  23333323333333321  136


Q ss_pred             ccEEEeCCChh----h-----------------------HHhHHHhhhcCCEEEEEccccc
Q 024411          150 IDIYFENVGGK----L-----------------------LDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~~----~-----------------------~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +|+++.++|..    .                       ++.+++.+++.|+++.++....
T Consensus       125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~  185 (290)
T PRK06701        125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITG  185 (290)
T ss_pred             CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence            89999887731    0                       1223444556789998876543

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.011  Score=47.07  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHH---C---
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRY---F---  146 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~---~---  146 (268)
                      +.+++|+|++|++|..+++.+...|++|++. .++.++.+...+.+   +.. ..  .|..+.++....+++.   .   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~   85 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQIR   85 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999899998775 56665543332122   221 12  2444432333333332   1   


Q ss_pred             -C-CCccEEEeCCCh
Q 024411          147 -P-EGIDIYFENVGG  159 (268)
Q Consensus       147 -~-~~~d~v~d~~g~  159 (268)
                       + +++|+++.++|.
T Consensus        86 ~~~~~id~vi~~ag~  100 (254)
T PRK12746         86 VGTSEIDILVNNAGI  100 (254)
T ss_pred             cCCCCccEEEECCCC
Confidence             1 268999998874

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.19  E-value=0.0052  Score=50.85  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=60.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-FNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|+|+||+|-+|..+++.+...|.+|.+++++.++...+. ..+...+ .|..+.+.+...+    . ++|+|+.+++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al----~-g~d~Vi~~~~~~   75 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAELVYGDLSLPETLPPSF----K-GVTAIIDASTSR   75 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEEEECCCCCHHHHHHHH----C-CCCEEEECCCCC
Confidence            6999999999999999999999999999999876655544 4454322 2333321222222    2 489999987631


Q ss_pred             h-------------HHhHHHhhhcCC--EEEEEccc
Q 024411          161 L-------------LDAVLPNMKIRG--RIAACGMI  181 (268)
Q Consensus       161 ~-------------~~~~~~~l~~~G--~~v~~g~~  181 (268)
                      .             ....++.++..|  +++.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            0             123444444444  78877653

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0092  Score=47.17  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++.+++|+|++|++|..+++.+...|++|+.+.++.. ..+.+.+   ..+.. ..  .|..+.+++.+.+.+..  .++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999888775433 2222211   22321 12  23333323333333321  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|+++.++|
T Consensus        84 id~vi~~ag   92 (245)
T PRK12937         84 IDVLVNNAG   92 (245)
T ss_pred             CCEEEECCC
Confidence            899999887

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.18  E-value=0.0033  Score=50.79  Aligned_cols=82  Identities=13%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCCCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--C
Q 024411           77 PKHGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSK---DKVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        77 ~~~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~---~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .-.++.+||+||+  +++|.+++..+...|++|+++.+++   ++.+.+.++++...  ..|..+.++....+.+..  .
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            3456899999996  7999999999999999999887764   33344432445322  234444323333333322  2


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +.+|++++++|
T Consensus        87 g~iD~lv~nAG   97 (272)
T PRK08159         87 GKLDFVVHAIG   97 (272)
T ss_pred             CCCcEEEECCc
Confidence            46999999886

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.18  E-value=0.0042  Score=49.73  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHHH---HHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKDK---VDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~~---~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+  +++|.++++.+...|++|+++.++++.   .+.+.++++....  .|..+.++....+.+..  .+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            46899999997  489999999999999999999887543   2333323433222  24333323333333322  146


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        89 ld~lv~nAg   97 (258)
T PRK07533         89 LDFLLHSIA   97 (258)
T ss_pred             CCEEEEcCc
Confidence            999999886

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.18  E-value=0.0024  Score=51.09  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|++++++ ++.+.+.+   +.+.. .  ..|..+.+.....+.+..  .+.+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999877 33332221   23322 1  234444323333333221  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.0033  Score=50.13  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      .+.+++|+||+|++|..++..+...|++|+++.+++++.+.+.++   .+.. .  ..|..+.+.+...+.+...  +.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999998888999999999987765443322   2321 1  2244443233333333221  368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0035  Score=50.01  Aligned_cols=81  Identities=21%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .+++++|+|+++++|..+++.+...|++|++++++++ ..+.+.+   ..+.. .  ..|..+.++..+.+.+..  .+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999999987643 2222211   22322 1  223333323333333321  246


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999873

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.17  E-value=0.0049  Score=52.70  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=54.1

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      -.+.+++|+|+ |++|.+++..+...|+ +++++.|+.++.+.+.++++...++.++   ++.+.+.     .+|+|++|
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~---~l~~~l~-----~aDiVI~a  249 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS---ELPQLIK-----KADIIIAA  249 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH---HHHHHhc-----cCCEEEEC
Confidence            45788999997 9999999999999997 8999999988877666466522233221   2222222     49999999


Q ss_pred             CChh
Q 024411          157 VGGK  160 (268)
Q Consensus       157 ~g~~  160 (268)
                      ++.+
T Consensus       250 T~a~  253 (414)
T PRK13940        250 VNVL  253 (414)
T ss_pred             cCCC
Confidence            9974

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.17  E-value=0.0042  Score=49.83  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++.++|+||++  ++|.++++.+...|++|+...+++.   ..+.+.++.+...  ..|..+.++....+.+..  .+.
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            568899999986  8999999988889999999887642   2233322334322  234444323333333322  246


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        87 iDilVnnag   95 (260)
T PRK06603         87 FDFLLHGMA   95 (260)
T ss_pred             ccEEEEccc
Confidence            999998876

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.17  E-value=0.0048  Score=49.55  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      .+.+++|+|+++++|..++..+...|++|+++.+++++.+.+.+.+   +.. .  ..|..+.+.....+.+...  +.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5678999999999999999988889999999998887655443222   322 1  2344443233333333221  368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999998873

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.17  E-value=0.0034  Score=51.85  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC--C--ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF--D--EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~--~--~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +++++|+||++++|..++..+...| ++|++++++.++.+.+.+++..  .  ..  .|..+.++....+.+..  .+.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5689999999999999999888899 8999999988776655434432  1  11  34444323333333321  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        83 D~lI~nAG   90 (314)
T TIGR01289        83 DALVCNAA   90 (314)
T ss_pred             CEEEECCC
Confidence            99999887

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=97.16  E-value=0.0034  Score=50.45  Aligned_cols=82  Identities=17%  Similarity=0.313  Sum_probs=59.1

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCC---eeeecCChhhHHHHHHHHCCC-C
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGFD---EAFNYKEEADLNAALKRYFPE-G  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~-~  149 (268)
                      +-|++.+|+||+.++|.+-+.=+...|.+|+.+.|+++|++...++    .+..   .++|+.+.+..-+.+++.+.+ .
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~  126 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD  126 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence            3468999999999999775544444999999999999998776543    3431   356877752224555555555 7


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +-+.++++|-
T Consensus       127 VgILVNNvG~  136 (312)
T KOG1014|consen  127 VGILVNNVGM  136 (312)
T ss_pred             eEEEEecccc
Confidence            8899999984

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.16  E-value=0.0032  Score=49.92  Aligned_cols=81  Identities=20%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      .+.+++|+||+|++|..++..+...|++|++++++.++...+.+   ..+.. ..  .|..+.+++...+.+...  +.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            45789999999999999999999899999999998665443321   22221 12  233333234443333221  268


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999998764

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0032  Score=51.27  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH---------HHHHHHHHhc---CCCe---eeecCChhhHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK---------DKVDLLKNKF---GFDE---AFNYKEEADLNAAL  142 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~---------~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~  142 (268)
                      -+++++||+||++++|..+++.+...|++|++++++.         ++.+.+.+++   +...   ..|..+.++....+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3578999999999999999999999999999987654         3333322122   3221   12444432333333


Q ss_pred             HHHC--CCCccEEEeCCCh
Q 024411          143 KRYF--PEGIDIYFENVGG  159 (268)
Q Consensus       143 ~~~~--~~~~d~v~d~~g~  159 (268)
                      .+..  .+.+|++++++|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            3322  2479999998874

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0033  Score=50.05  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .+++++|+||+|++|..+++.+...|++|+++++++++    . ..+.. .  ..|..+.++....+....  .+.+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----T-VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----h-hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46899999999999999999999999999999987654    1 22221 1  234444323333333221  1368999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.++|
T Consensus        80 i~~ag   84 (252)
T PRK07856         80 VNNAG   84 (252)
T ss_pred             EECCC
Confidence            99887

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.13  E-value=0.003  Score=50.54  Aligned_cols=79  Identities=22%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHhcCCC--eeeecCChhh---HHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV----DLLKNKFGFD--EAFNYKEEAD---LNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~----~~~~~~~g~~--~v~~~~~~~~---~~~~~~~~~~~~  149 (268)
                      .|+.|||+||++|+|.+.++=....|+++++.+.+++..    +..+ +.|-.  ++.|-.+.++   ..+.+++..+ .
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~-~~g~~~~y~cdis~~eei~~~a~~Vk~e~G-~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIR-KIGEAKAYTCDISDREEIYRLAKKVKKEVG-D  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHH-hcCceeEEEecCCCHHHHHHHHHHHHHhcC-C
Confidence            589999999999999998888888899888888766533    3333 33422  2334433223   4444444333 6


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++.+|-
T Consensus       115 V~ILVNNAGI  124 (300)
T KOG1201|consen  115 VDILVNNAGI  124 (300)
T ss_pred             ceEEEecccc
Confidence            9999999873

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.13  E-value=0.012  Score=45.40  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=73.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCe-eeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKN---KFGFDE-AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~---~~g~~~-v~~~~~~~~~~~~~~~~~  146 (268)
                      ..++....++||=+|  +.+|..++.+|..+.  .+++.+..++++.+.+++   +.|... +.-.... +..+.+....
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g-dal~~l~~~~  129 (219)
T COG4122          53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG-DALDVLSRLL  129 (219)
T ss_pred             HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC-cHHHHHHhcc
Confidence            345677888999888  678999999998876  489999999998888774   345544 2222212 3344444433


Q ss_pred             CCCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.||+|| |+.-.   ..++.++++|++||.++.-..
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            45899887 55432   578999999999998887543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.12  E-value=0.0047  Score=47.89  Aligned_cols=94  Identities=18%  Similarity=0.209  Sum_probs=63.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      -++.+||=.|+.||  + +.+-+..+|++|++++.+++..+.++ ......  -++|...  ..+++.+. ++.||+|+.
T Consensus        58 l~g~~vLDvGCGgG--~-Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~--~~edl~~~-~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGGG--I-LSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQA--TVEDLASA-GGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCcc--H-hhHHHHHCCCeeEEecCChHHHHHHH-Hhhhhccccccchhh--hHHHHHhc-CCCccEEEE
Confidence            37889999998554  3 44445567899999999999999887 332221  2456652  23333322 148999965


Q ss_pred             -----CCCh--hhHHhHHHhhhcCCEEEEE
Q 024411          156 -----NVGG--KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       156 -----~~g~--~~~~~~~~~l~~~G~~v~~  178 (268)
                           .+..  ..+..+.++++|+|.++..
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence                 4454  4678899999999987664

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.12  E-value=0.0034  Score=50.09  Aligned_cols=81  Identities=23%  Similarity=0.342  Sum_probs=54.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.+++|+|+++++|..++..+...|++|++++++.++.+.+.++   .+.. .  ..|..+.++..+.+....  .+.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999887765544322   2222 1  234444323333333221  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999998873

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0078  Score=48.66  Aligned_cols=152  Identities=19%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             CCCCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh-cCCCCCcEEEEecCcchHHHHH
Q 024411           18 PEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLV   96 (268)
Q Consensus        18 ~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~-~~~~~~~~vlI~ga~g~~G~~~   96 (268)
                      ..++.|++.+...+|.+|..-....+++++| +  +.|-...   ...|+ .||..+ ..++++.++|=.|..  .|.++
T Consensus       107 ~P~rig~~f~I~Psw~~~~~~~~~~~i~lDP-G--lAFGTG~---HpTT~-lcL~~Le~~~~~g~~vlDvGcG--SGILa  177 (300)
T COG2264         107 HPVRIGERFVIVPSWREYPEPSDELNIELDP-G--LAFGTGT---HPTTS-LCLEALEKLLKKGKTVLDVGCG--SGILA  177 (300)
T ss_pred             CcEEeeeeEEECCCCccCCCCCCceEEEEcc-c--cccCCCC---ChhHH-HHHHHHHHhhcCCCEEEEecCC--hhHHH
Confidence            3467788888888888875554455777844 3  4332222   22222 233222 235799999999963  36555


Q ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEEeCCC-h---hhHHhHHHhh
Q 024411           97 GQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYFENVG-G---KLLDAVLPNM  169 (268)
Q Consensus        97 i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~d~~g-~---~~~~~~~~~l  169 (268)
                      +..+ .+|+ +|++++-.+...+.+++....+.+-  ..... ..  .......+.+|+|+-..= .   .......+++
T Consensus       178 IAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~-~~--~~~~~~~~~~DvIVANILA~vl~~La~~~~~~l  253 (300)
T COG2264         178 IAAA-KLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKG-FL--LLEVPENGPFDVIVANILAEVLVELAPDIKRLL  253 (300)
T ss_pred             HHHH-HcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccc-cc--chhhcccCcccEEEehhhHHHHHHHHHHHHHHc
Confidence            5544 5566 7999998877776666322222111  01110 00  111111237999986543 2   3567888999


Q ss_pred             hcCCEEEEEcccc
Q 024411          170 KIRGRIAACGMIS  182 (268)
Q Consensus       170 ~~~G~~v~~g~~~  182 (268)
                      +|+|++++.|-..
T Consensus       254 kpgg~lIlSGIl~  266 (300)
T COG2264         254 KPGGRLILSGILE  266 (300)
T ss_pred             CCCceEEEEeehH
Confidence            9999999988643

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0057  Score=46.63  Aligned_cols=112  Identities=19%  Similarity=0.234  Sum_probs=73.9

Q ss_pred             hccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCh
Q 024411           59 ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEE  135 (268)
Q Consensus        59 ~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~  135 (268)
                      ++..+.+.|. .+ +...++++++||=+|+  |.|..++-+++..+ +|+.+.+.++=.+.+++   .+|..+|.....+
T Consensus        54 tis~P~~vA~-m~-~~L~~~~g~~VLEIGt--GsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD  128 (209)
T COG2518          54 TISAPHMVAR-ML-QLLELKPGDRVLEIGT--GSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD  128 (209)
T ss_pred             eecCcHHHHH-HH-HHhCCCCCCeEEEECC--CchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence            3344445554 22 4557999999999994  56999999998888 99999988774444432   5677443222211


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCChhh-HHhHHHhhhcCCEEEEEcc
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGGKL-LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~  180 (268)
                       .    ...+... .||.++-+.+.+. -...++.|+++|+++..-.
T Consensus       129 -G----~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         129 -G----SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             -c----ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence             1    1111222 7999987777644 4678899999999887644

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.10  E-value=0.0048  Score=49.38  Aligned_cols=81  Identities=15%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             CCcEEEEecC--cchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCC---eeeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAA--SGAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLKNKFGFD---EAFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga--~g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .+++++|+|+  ++++|.++++.+...|++|++++++.  +..+.+.++++..   ...|..+.++....+.+..  .+.
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999998  79999999999999999999988653  3334443244331   1234444323333333322  247


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        86 iD~li~nAG~   95 (256)
T PRK07889         86 LDGVVHSIGF   95 (256)
T ss_pred             CcEEEEcccc
Confidence            9999998873

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.10  E-value=0.013  Score=49.23  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHhcCCCeeeecCChhhHHHHHHH------------
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL--GCYVVGSA--GSKDKVDLLKNKFGFDEAFNYKEEADLNAALKR------------  144 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~------------  144 (268)
                      ++|.|.|++|++|..+++..+..  .++|++++  ++.++.....+++++..+.-.++  .....+++            
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~--~~~~~l~~~l~~~~~~v~~G   79 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE--EAAKELKEALAAAGIEVLAG   79 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHhhccCCceEEEC
Confidence            47999999999999999998766  56888876  34445544444788876544443  22222322            


Q ss_pred             ------HCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          145 ------YFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       145 ------~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                            .... .+|+|+.+.++ ..+.-.+..++.|-++.+.
T Consensus        80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence                  1222 58999998887 6778888888888777664

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.09  E-value=0.0052  Score=49.03  Aligned_cols=80  Identities=14%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      .+.+++|+||+|++|..+++.+...|++|+++.++. +..+.+. ..+... ..|..+.++....+.+..  .+++|+++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR-EKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-hCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            467899999999999999999999999998876543 3344444 333321 234444323333333322  23689999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .++|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            98863

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.09  E-value=0.013  Score=44.53  Aligned_cols=106  Identities=17%  Similarity=0.279  Sum_probs=72.6

Q ss_pred             CCcEEEEec-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChh---hHHHHHHHHCCCCccEE
Q 024411           79 HGECVFISA-ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEA---DLNAALKRYFPEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~g-a~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~---~~~~~~~~~~~~~~d~v  153 (268)
                      ..+.|||+| +.||+|.++..-...-|+.|+++.|+-+....+..++|.. .-+|..+++   .+..+++....|+.|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            345677875 5688999999999999999999999988777665467763 334444432   34445555555689999


Q ss_pred             EeCCChh----h---------------------HHhH--HHhhhcCCEEEEEcccccc
Q 024411          154 FENVGGK----L---------------------LDAV--LPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~----~---------------------~~~~--~~~l~~~G~~v~~g~~~~~  184 (268)
                      ++.+|..    .                     ...+  -.+++..|++|.+|+..+.
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~  143 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV  143 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE
Confidence            9977732    1                     1111  1245678999999987654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.09  E-value=0.0045  Score=49.36  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-Cee--eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DEA--FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..+|||+||+|.+|..++..+...|++|+++.+++++..... ..+. ..+  .|..+.   ...+.+....++|+++.+
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~~~Dl~d~---~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL-PQDPSLQIVRADVTEG---SDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc-ccCCceEEEEeeCCCC---HHHHHHHhhcCCCEEEEC
Confidence            578999999999999999988888999999998877654332 1111 122  233321   122322222258999988


Q ss_pred             CChh--------------hHHhHHHhhhc--CCEEEEEccc
Q 024411          157 VGGK--------------LLDAVLPNMKI--RGRIAACGMI  181 (268)
Q Consensus       157 ~g~~--------------~~~~~~~~l~~--~G~~v~~g~~  181 (268)
                      .|..              .....++.+..  .++++.++..
T Consensus        93 ~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         93 TGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            7641              12334444443  2578887664

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.08  E-value=0.0055  Score=52.27  Aligned_cols=75  Identities=29%  Similarity=0.391  Sum_probs=50.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+++++|+||+|++|.+++..+...|++|+++++++++.+...+..+.. ..  .|..+. +   .+.+.. +++|+++.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~-~---~v~~~l-~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQE-A---ALAELL-EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCH-H---HHHHHh-CCCCEEEE
Confidence            4689999999999999999999899999999998876554322121111 12  233332 1   222222 36999998


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus       252 nAG  254 (406)
T PRK07424        252 NHG  254 (406)
T ss_pred             CCC
Confidence            876

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.08  E-value=0.0065  Score=48.83  Aligned_cols=80  Identities=14%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .+++++|+||++  ++|.++++.+...|++|+++.+++.   ..+.+.++.+...  ..|..+.++....+.+..  .+.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            468999999975  8999999999999999998887632   2222321222222  234444324444443332  246


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        85 iD~linnAg   93 (262)
T PRK07984         85 FDGFVHSIG   93 (262)
T ss_pred             CCEEEECCc
Confidence            999999987

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0053  Score=49.19  Aligned_cols=80  Identities=23%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--hcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN--KFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~--~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++.+++|+|++|++|..++..+...|++|+++.++++..+...+  ..+.. .  ..|..+.++....+.+..  .+.+|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46789999999999999999999999999999988653333321  22222 1  223333213333333221  23689


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      +++.++|
T Consensus        85 ~vi~~ag   91 (263)
T PRK08226         85 ILVNNAG   91 (263)
T ss_pred             EEEECCC
Confidence            9999887

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.08  E-value=0.0088  Score=51.44  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      ...++++++|+|+ |.+|..+++.++..| .+|+++.++.++...+.++++.. .++..   ++.+.+.     ++|+|+
T Consensus       176 ~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~~---~l~~~l~-----~aDvVi  245 (417)
T TIGR01035       176 GSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKFE---DLEEYLA-----EADIVI  245 (417)
T ss_pred             CCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeHH---HHHHHHh-----hCCEEE
Confidence            3457789999997 999999999999999 58999999988765443367653 33221   3333332     499999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +|++.
T Consensus       246 ~aT~s  250 (417)
T TIGR01035       246 SSTGA  250 (417)
T ss_pred             ECCCC
Confidence            99986

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.07  E-value=0.018  Score=45.68  Aligned_cols=103  Identities=16%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHH----HHHHhcCCC-e--eeecCChhhHHHHHHHHCC--CC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVD----LLKNKFGFD-E--AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~----~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      +.++||+||+|++|..+++-+...|++|+.+.++ .++..    .++ ..+.. .  ..|....++....+.+...  +.
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVK-ENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH-HcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999888999998877643 23222    222 23322 1  1244333133222332211  36


Q ss_pred             ccEEEeCCCh-h-------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          150 IDIYFENVGG-K-------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~-~-------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +|.++.++|. .                         ..+.+.+.++..|+++.++...+
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG  144 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc
Confidence            8999998873 0                         02234445566789999887554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0055  Score=49.08  Aligned_cols=103  Identities=21%  Similarity=0.263  Sum_probs=74.1

Q ss_pred             HHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-e--ee--ecCChh
Q 024411           65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-E--AF--NYKEEA  136 (268)
Q Consensus        65 ~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~--v~--~~~~~~  136 (268)
                      ..++..+....++++|.++|=+|+  |-|.+++.+|+.+|++|+.++-|++..+.+++   +.|.. .  +.  |+++  
T Consensus        58 ~~k~~~~~~kl~L~~G~~lLDiGC--GWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--  133 (283)
T COG2230          58 RAKLDLILEKLGLKPGMTLLDIGC--GWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--  133 (283)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCC--ChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--
Confidence            345555667788999999999996  56899999999999999999999998777763   34443 1  11  2221  


Q ss_pred             hHHHHHHHHCCCCccEEE-----eCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          137 DLNAALKRYFPEGIDIYF-----ENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       137 ~~~~~~~~~~~~~~d~v~-----d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       +        .+.||-|+     +.+|.    ..+..+.+.|+|+|++++...
T Consensus       134 -~--------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         134 -F--------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             -c--------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence             1        12477664     45664    356788899999999877654

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0031  Score=49.55  Aligned_cols=76  Identities=24%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~  157 (268)
                      .+++++|+||+|++|..+++.+...|++|+++.++..+ .    ........|..+.+.....+.+.... ++|+++.++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~-~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID-D----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNV   76 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc-c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECC
Confidence            35789999999999999999999999999999987654 1    11111223444432343434433322 689999988


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      |.
T Consensus        77 g~   78 (234)
T PRK07577         77 GI   78 (234)
T ss_pred             CC
Confidence            73

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.06  E-value=0.0042  Score=49.78  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh----cCCC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK----FGFD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~----~g~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      +++++||+||++++|..++..+...|++|+.+.+ ++++.+...++    .+.. .  ..|..+.++....+.+..  .+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999988864 44443332212    2321 1  234444323333333322  23


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++++|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            6899999875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.06  E-value=0.018  Score=43.06  Aligned_cols=98  Identities=22%  Similarity=0.334  Sum_probs=65.2

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ++++++.++=.|+  +.|...++++.... .+||++.++++..+..++   ++|.+.+.....  +..+.+....  .+|
T Consensus        31 ~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g--~Ap~~L~~~~--~~d  104 (187)
T COG2242          31 RPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG--DAPEALPDLP--SPD  104 (187)
T ss_pred             CCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec--cchHhhcCCC--CCC
Confidence            6899998888886  45888889994433 399999999887766532   577664322222  2222222111  589


Q ss_pred             EEEeCCC-h--hhHHhHHHhhhcCCEEEEEc
Q 024411          152 IYFENVG-G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       152 ~v~d~~g-~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+|=-=| +  ..++.++..|+++|++|.-.
T Consensus       105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         105 AIFIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            8874333 2  46789999999999988753

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.05  E-value=0.0056  Score=48.83  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD--KVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~--~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .+++++|+|++|++|.++++.+...|++|+.+.++..  ..+.+. +.+.. .  ..|..+.++....+.+..  .+.+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVT-ALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-hcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3679999999999999999999999999998865432  223333 33322 1  123333223333333321  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.05  E-value=0.0042  Score=49.67  Aligned_cols=79  Identities=13%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCC--Cee--eecCChhhHHHHHHHHC--CCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGF--DEA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~--~~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++||+|++|++|..++..+...|++|+.++++..+.+...++    .+.  .+.  .|..+.+.....+.+..  .++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999887655443212    221  122  23333313333333321  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|+++.++|
T Consensus        82 id~vv~~ag   90 (259)
T PRK12384         82 VDLLVYNAG   90 (259)
T ss_pred             CCEEEECCC
Confidence            899999887

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.04  E-value=0.0043  Score=49.77  Aligned_cols=81  Identities=9%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             CCcEEEEecC--cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH---HhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAA--SGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK---NKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga--~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~---~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++.++|+||  ++++|.++++.+...|++|+++.+.+...+.++   ++.+...  ..|..+.++....+.+..  .++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999996  579999999999999999998876543222222   1223222  234444323333333322  247


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        85 iD~lVnnAG~   94 (261)
T PRK08690         85 LDGLVHSIGF   94 (261)
T ss_pred             CcEEEECCcc
Confidence            9999998863

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.03  E-value=0.005  Score=48.87  Aligned_cols=80  Identities=13%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++.++||+||+|++|..+++.+...|++|++++++.++.+.+.+.   .+.. ..  .|..+.+...+.+....  .+++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            367899999999999999999999999999999888765544322   2221 12  23333213333333222  1368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99999887

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.02  E-value=0.013  Score=48.47  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      +...++++++||..|+ | .|..++.+++..+.  .|++++.+++..+.+++   +.|.+.+.....  +.......  .
T Consensus        74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g--D~~~~~~~--~  147 (322)
T PRK13943         74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG--DGYYGVPE--F  147 (322)
T ss_pred             HhcCCCCCCEEEEEeC-C-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC--Chhhcccc--c
Confidence            3346788999999996 4 69999999998764  79999999887766653   345544332222  22221111  1


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +.+|+|+.+.+. .......+.|+++|+++..
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            269999988775 3445678899999997763

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.018  Score=46.64  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC-CCCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF-PEGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~-~~~~d~  152 (268)
                      ++.++|+|+ |++|..++..+. .|++|+++++++++.+.+.+++   +.. .  ..|..+.+.....+.+.. .+.+|+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            357899998 799999998885 7999999999877655443232   321 1  234444323333333321 247999


Q ss_pred             EEeCCCh-h---h---------------HHhHHHhhhcCCEEEEEcccc
Q 024411          153 YFENVGG-K---L---------------LDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       153 v~d~~g~-~---~---------------~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      +++++|. .   .               ++...+.+..+|+++.+++..
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            9999873 1   1               233444555667777766544

>PRK06398 aldose dehydrogenase; Validated

Probab=97.01  E-value=0.0017  Score=52.06  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      .++++||+|+++++|..++..+...|++|+++.+++.+...+.     ....|..+.++..+.+.+..  .+.+|+++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~-----~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~   79 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVD-----YFKVDVSNKEQVIKGIDYVISKYGRIDILVNN   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceE-----EEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4679999999999999999999999999999987754321110     01224444323333333322  2368999998


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        80 Ag   81 (258)
T PRK06398         80 AG   81 (258)
T ss_pred             CC
Confidence            87

>PRK04148 hypothetical protein; Provisional

Probab=97.01  E-value=0.0096  Score=42.17  Aligned_cols=85  Identities=18%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .++.++++.|. | .|...+..+...|.+|++++.++...+.++ +.+...+.+.-    |...+.-.  +++|+++.+-
T Consensus        15 ~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-~~~~~~v~dDl----f~p~~~~y--~~a~liysir   85 (134)
T PRK04148         15 GKNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAK-KLGLNAFVDDL----FNPNLEIY--KNAKLIYSIR   85 (134)
T ss_pred             ccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-HhCCeEEECcC----CCCCHHHH--hcCCEEEEeC
Confidence            35678999997 6 787667677788999999999999888887 66664332111    11111111  2588888877


Q ss_pred             Ch-hhHHhHHHhhhc
Q 024411          158 GG-KLLDAVLPNMKI  171 (268)
Q Consensus       158 g~-~~~~~~~~~l~~  171 (268)
                      .. +....++++.+.
T Consensus        86 pp~el~~~~~~la~~  100 (134)
T PRK04148         86 PPRDLQPFILELAKK  100 (134)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            76 444445555444

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0085  Score=48.43  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe-e--eecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDE-A--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ..+++|+||+|++|..+++.+...|++|++++++.++.+.+.+   ..+... .  .|..+.+.+...+.+..  -+++|
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   89 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIE   89 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999987765543321   223221 1  24443323333333321  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        90 ~vi~~Ag~   97 (274)
T PRK07775         90 VLVSGAGD   97 (274)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.99  E-value=0.0064  Score=48.22  Aligned_cols=44  Identities=11%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL  120 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~  120 (268)
                      ..++.+++|+|++|++|..+++.+...|++|++++++.++.+.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~   52 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV   52 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence            45788999999999999999999988999999999988765443

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.97  E-value=0.0051  Score=48.94  Aligned_cols=78  Identities=15%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCccE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      .++||+|++|++|..++..+...|++|+++++++++.+.+.+.+   +.. .  ..|..+.+++...+.+..  .++.|+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   81 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDI   81 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            57999999999999999999999999999999887766554222   221 1  124444323333332221  135899


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      ++.+.+
T Consensus        82 vi~~a~   87 (255)
T TIGR01963        82 LVNNAG   87 (255)
T ss_pred             EEECCC
Confidence            988775

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0027  Score=50.79  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      +++++||+|++|++|..+++.+...|++|+++++++++.  ..  -... ...|..+.+.....+.+..  .+.+|++++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--LP--EGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--cC--CceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            468999999999999999999999999999999875431  11  1111 1234444312332222221  236899999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        84 ~ag   86 (260)
T PRK06523         84 VLG   86 (260)
T ss_pred             CCc
Confidence            887

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.97  E-value=0.0038  Score=46.18  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC--HHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS--KDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~--~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++|+||++++|..+++.+...|. +|+.+.++  .++.+.+.++   .+.. .+  .|..+.++....+.+..  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999999988888877 77777877  4444444223   3432 12  23333323444444332  237


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999998874

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0081  Score=49.44  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      .+++++|+||++++|.++++.+...|++|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            46899999999999999999999999999999876

>PRK12743 oxidoreductase; Provisional

Probab=96.96  E-value=0.0075  Score=48.18  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++++||+||++++|..+++.+...|++|+++.+ +.++.+.+.+   ..+.. +.  .|..+.++....+.+..  .+.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999988864 3343333221   23432 22  34444323333333221  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |.++.++|.
T Consensus        82 d~li~~ag~   90 (256)
T PRK12743         82 DVLVNNAGA   90 (256)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0066  Score=48.91  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--CCCccEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +++|+||+|++|..++..+...|++|++++++.++.+.+.+.   .+.. ..  .|..+.+++...+....  .+++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            689999999999999999988999999999888765543312   2222 12  23333212333222221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            998873

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.93  E-value=0.0061  Score=48.88  Aligned_cols=80  Identities=16%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             CCcEEEEecC--cchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAA--SGAVGQLVGQFAKLLGCYVVGSAGS---KDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga--~g~~G~~~i~l~~~~g~~V~~~~~~---~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      .+++++|+||  ++++|.++++.+...|++|+++.+.   +++.+.+.++++...  ..|..+.++....+.+...  +.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            4688999996  5799999999999999999987543   333333332444322  2344443244444433322  47


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        85 iD~lvnnAG   93 (260)
T PRK06997         85 LDGLVHSIG   93 (260)
T ss_pred             CcEEEEccc
Confidence            999999886

>PRK09135 pteridine reductase; Provisional

Probab=96.92  E-value=0.0078  Score=47.64  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=50.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHH---hcCC-C---eeeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKN---KFGF-D---EAFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~---~~g~-~---~v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .+.++||+||+|++|..++..+...|++|++++++. ++.+.+.+   .... .   ...|..+.+.....+.+..  -+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999988999999999753 33333221   1111 1   1234444323333333221  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|+++.++|
T Consensus        85 ~~d~vi~~ag   94 (249)
T PRK09135         85 RLDALVNNAS   94 (249)
T ss_pred             CCCEEEECCC
Confidence            6899999987

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.91  E-value=0.023  Score=46.65  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CCcEEEEecC--cchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           79 HGECVFISAA--SGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        79 ~~~~vlI~ga--~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      .|+++||+|+  +.|+|.++++.+...|++|++ .+...
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~   45 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVP   45 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcc
Confidence            5789999999  799999999999999999988 44433

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.90  E-value=0.0074  Score=48.34  Aligned_cols=105  Identities=13%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGS------KDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--  146 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~------~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--  146 (268)
                      .+++++|+||+  +++|.+++..+...|++|+++.++      ++..+.+.++.+...  ..|..+.++..+.+.+..  
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            46889999985  799999999999999999887543      222333331222111  234444323333333322  


Q ss_pred             CCCccEEEeCCChh-------h-----------------------HHhHHHhhhcCCEEEEEccccc
Q 024411          147 PEGIDIYFENVGGK-------L-----------------------LDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       147 ~~~~d~v~d~~g~~-------~-----------------------~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      .+.+|++++++|..       .                       .+..++.++.+|+++.++...+
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~  151 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGG  151 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence            14699999988731       0                       2345556667799988876543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.90  E-value=0.01  Score=48.10  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=60.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..+.+++|+|+ |++|.+++..+...| .+|+++.|+.++.+.+.+.++....+....  +..+.+     ..+|++++|
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~--~~~~~~-----~~~DivIna  192 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDL--ELQEEL-----ADFDLIINA  192 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecc--cchhcc-----ccCCEEEEC
Confidence            35678999997 999999999999999 599999999988776653444211011100  111111     258999999


Q ss_pred             CChhhH------HhHHHhhhcCCEEEEEc
Q 024411          157 VGGKLL------DAVLPNMKIRGRIAACG  179 (268)
Q Consensus       157 ~g~~~~------~~~~~~l~~~G~~v~~g  179 (268)
                      +.....      ......+.++..++.+.
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            874211      12335566666666553

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.89  E-value=0.0099  Score=46.62  Aligned_cols=99  Identities=22%  Similarity=0.275  Sum_probs=70.7

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC---CeeeecCChhhHHHHHHHH-CCC-
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF---DEAFNYKEEADLNAALKRY-FPE-  148 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~-~~~-  148 (268)
                      ....+|++||=.+  +|+|-.+..+++..|- +|++++.|+..++.++++...   .. +.+...     +..++ .++ 
T Consensus        47 ~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~-----dAe~LPf~D~  118 (238)
T COG2226          47 LGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG-----DAENLPFPDN  118 (238)
T ss_pred             hCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe-----chhhCCCCCC
Confidence            4456899999887  5679999999998875 999999999999888854432   11 211111     12221 233 


Q ss_pred             CccEEEeCCCh-------hhHHhHHHhhhcCCEEEEEccc
Q 024411          149 GIDIYFENVGG-------KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       149 ~~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      .||.+.-+.|-       ..+.++.+.|+|+|+++.+...
T Consensus       119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            78988766552       4789999999999999988763

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0088  Score=48.34  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-------HHH----HHHhcCCC-e--eeecCChhhHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-------VDL----LKNKFGFD-E--AFNYKEEADLNAALKR  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-------~~~----~~~~~g~~-~--v~~~~~~~~~~~~~~~  144 (268)
                      .+.+++|+||+|++|..++..+...|++|++++++.+.       .+.    ++ ..+.. .  ..|..+.+.....+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIE-AAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHH-hcCCceEEEEecCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999986532       111    22 22332 1  2344443233333332


Q ss_pred             HC--CCCccEEEeCCCh
Q 024411          145 YF--PEGIDIYFENVGG  159 (268)
Q Consensus       145 ~~--~~~~d~v~d~~g~  159 (268)
                      ..  .+.+|++++++|.
T Consensus        84 ~~~~~g~id~li~~ag~  100 (273)
T PRK08278         84 AVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHhCCCCEEEECCCC
Confidence            21  1369999998873

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.88  E-value=0.015  Score=49.57  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=57.4

Q ss_pred             EEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc-CCC---eeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKF-GFD---EAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~-g~~---~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      |+|+|+ |.+|..+++.+...+-  +|++.+++.++.+.+.+++ +..   ..+|..+.++    +.+... +.|+|++|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----l~~~~~-~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPES----LAELLR-GCDVVINC   74 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHH----HHHHHT-TSSEEEE-
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHH----HHHHHh-cCCEEEEC
Confidence            789999 9999999999987764  8999999999988776332 221   2344443212    333322 37999999


Q ss_pred             CChh-hHHhHHHhhhcCCEEEEEc
Q 024411          157 VGGK-LLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       157 ~g~~-~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|.. ...-+..++..+-.++...
T Consensus        75 ~gp~~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   75 AGPFFGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             SSGGGHHHHHHHHHHHT-EEEESS
T ss_pred             CccchhHHHHHHHHHhCCCeeccc
Confidence            9984 4445555666677888743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.01  Score=47.47  Aligned_cols=80  Identities=9%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCC--e--eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSK---DKVDLLKNKFGFD--E--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~---~~~~~~~~~~g~~--~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .+++++|+||+  +++|.++++.+...|++|+++.++.   ++.+.+.+++...  .  ..|..+.++....+.+..  -
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            46899999997  7999999999999999999987542   3444444344211  1  234444323333333322  2


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +.+|++++++|
T Consensus        86 g~ld~lv~nag   96 (257)
T PRK08594         86 GVIHGVAHCIA   96 (257)
T ss_pred             CCccEEEECcc
Confidence            47999998876

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.88  E-value=0.021  Score=44.29  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCe--eeecCChhhHHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGFDE--AFNYKEEADLNAALKRY  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~  145 (268)
                      ....++++++||-+|+  |.|..+..+++..+  .+|+.++.+++..+.+++.   .+..+  ++..+..    ....  
T Consensus        70 ~~l~~~~g~~VLdIG~--GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~----~~~~--  141 (212)
T PRK13942         70 ELLDLKEGMKVLEIGT--GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT----LGYE--  141 (212)
T ss_pred             HHcCCCCcCEEEEECC--cccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc----cCCC--
Confidence            4456889999999995  55778888888765  5999999998887777643   34332  2222211    0010  


Q ss_pred             CCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          146 FPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       146 ~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      ..+.||.|+-.... .......+.|+++|+++..
T Consensus       142 ~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        142 ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            11379998754443 5556788899999998775

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.88  E-value=0.019  Score=45.61  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHH---HCCCCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKR---YFPEGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~---~~~~~~d~  152 (268)
                      +.+++|+||+|++|..++..+...|++|+++.+ ++++.+.+.+.++.. ..  .|..+.+++...+.+   ..+.++|+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~   84 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPITT   84 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence            568999999999999999999999999988754 445444444244322 11  243333233333332   22224899


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      ++.++|
T Consensus        85 li~~ag   90 (253)
T PRK08642         85 VVNNAL   90 (253)
T ss_pred             EEECCC
Confidence            998875

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.87  E-value=0.0072  Score=47.78  Aligned_cols=80  Identities=24%  Similarity=0.348  Sum_probs=51.3

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHCC--CCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      +.++||+||+|++|..++..+...|++|+++ .+++++.+.+.+.+   +.. .+  .|..+.+.+.+.+.+...  +++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999998888889999998 87776654443222   211 11  233333133332322211  369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999988874

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.87  E-value=0.0079  Score=47.43  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhc---CCC---eeeecCChhhHHHHHHHHC--CCCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKF---GFD---EAFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++||+|++|++|..++..+...|++|+++.+ ++++.+...++.   +..   ...|..+.+.+...+.+..  .+.+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            36899999999999999999999999999887 444333222122   211   1224443323333333321  23689


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      .++.++|
T Consensus        81 ~vi~~ag   87 (242)
T TIGR01829        81 VLVNNAG   87 (242)
T ss_pred             EEEECCC
Confidence            9999987

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08264 short chain dehydrogenase; Validated

Probab=96.86  E-value=0.0066  Score=47.83  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=51.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHCCCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      .+.+++|+||+|++|..+++.+...|+ +|+++.+++++.+.    .+.. .+  .|..+.+++.+.+...  +.+|+++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi   78 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAA--SDVTILV   78 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhc--CCCCEEE
Confidence            457899999999999999999999999 99999988765442    2221 12  2444332333333221  2589999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .++|.
T Consensus        79 ~~ag~   83 (238)
T PRK08264         79 NNAGI   83 (238)
T ss_pred             ECCCc
Confidence            88875

>PRK05599 hypothetical protein; Provisional

Probab=96.85  E-value=0.0074  Score=47.96  Aligned_cols=77  Identities=14%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--ee--eecCChhhHHHHHHHHC--CCCccE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--EA--FNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~v--~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +++|+||++++|..++..+. .|++|+++.+++++.+.+.+++   +..  ..  .|..+.+.....+.+..  .+.+|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            58999999999999888776 5999999999888776553232   322  12  24443323333222221  246899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9988773

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0085  Score=47.41  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-ee--eecCChhhHHHHHHHHCCCCccEE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-EA--FNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      .+++|+||+|++|..+++.+...|++|+++++++++.+...+.+    +.. ..  .|..+.++....+.+. ...+|.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~d~v   80 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSL-PALPDIV   80 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHH-hhcCCEE
Confidence            47999999999999999999999999999999887665433121    111 12  2333321333333332 1247999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        81 v~~ag~   86 (243)
T PRK07102         81 LIAVGT   86 (243)
T ss_pred             EECCcC
Confidence            987763

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.84  E-value=0.0068  Score=55.49  Aligned_cols=81  Identities=19%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe----eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE----AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.+++    +...    ..|..+.+.....+.+..  .+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999877665443232    2211    234444323333333322  24


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|++++++|.
T Consensus       493 ~iDilV~nAG~  503 (676)
T TIGR02632       493 GVDIVVNNAGI  503 (676)
T ss_pred             CCcEEEECCCC
Confidence            79999999873

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.84  E-value=0.012  Score=46.46  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHH---hcCCC-eee--ecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKN---KFGFD-EAF--NYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~---~~g~~-~v~--~~~~~~~~~~~~~~~~~--~~  149 (268)
                      ++.+++|+|++|++|..++..+...|++|+++.++..+ .+...+   ..+.. ..+  |..+.+.+.+.+.+...  ++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999999999999887765542 222211   22222 122  44443233333333221  26


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|.++.++|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999988873

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.84  E-value=0.013  Score=43.91  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=54.3

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--Ce-ee--ecCChhhHHHHHHHHCC--CCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--DE-AF--NYKEEADLNAALKRYFP--EGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~~-v~--~~~~~~~~~~~~~~~~~--~~~d~  152 (268)
                      ++..+|+|+++++|.+..|.+...|++|.+.+...+..+..-+.++.  ++ .|  |..+..+....+++...  |.+++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv   93 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV   93 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence            45678999999999999999999999999998776654444336655  22 22  33333133332333322  37899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++|+|-
T Consensus        94 lVncAGI  100 (256)
T KOG1200|consen   94 LVNCAGI  100 (256)
T ss_pred             EEEcCcc
Confidence            9999984

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.84  E-value=0.01  Score=47.49  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++++|+||+|++|..+++.+...|++|+++.++. +....+.+   ..+.. .  ..|..+.+...+.+....  .+.
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999999998887743 23322221   22322 1  234444323333333321  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        86 id~lv~~ag~   95 (261)
T PRK08936         86 LDVMINNAGI   95 (261)
T ss_pred             CCEEEECCCC
Confidence            8999998873

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.83  E-value=0.0079  Score=47.74  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++.+++|+||+|++|..++..+...|++|++. .++.++.+.+.+   +.+.. ..  .|..+.++....+.+..  .+.
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999998764 555554433321   23332 12  23333323333333321  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999998873

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.82  E-value=0.003  Score=50.77  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .+.+++|+|++|++|..+++.+...|++|+++++++.+.+.    .... ...|..+.+++...+.+..  .+.+|+++.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH----ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc----CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999999999999999999999999999877543321    1111 1234444323333333321  136899999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        84 ~Ag   86 (266)
T PRK06171         84 NAG   86 (266)
T ss_pred             CCc
Confidence            887

>PRK07069 short chain dehydrogenase; Validated

Probab=96.82  E-value=0.0091  Score=47.39  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhc----CCCe----eeecCChhhHHHHHHHHC--CCCcc
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKNKF----GFDE----AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++|+|++|++|..+++.+...|++|+++.++ .++.+.+.+++    +...    ..|..+.+.+...+.+..  -+++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            7999999999999999999899999999987 55544443232    1111    124444323433333322  13689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        82 ~vi~~ag~   89 (251)
T PRK07069         82 VLVNNAGV   89 (251)
T ss_pred             EEEECCCc
Confidence            99998873

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.82  E-value=0.024  Score=43.04  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCC-C
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLL-G-CYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPE-G  149 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g-~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~-~  149 (268)
                      ...++++++||.+|+ |. |..+..+++.. + .+|++++.++..    . ..+... ..|..+. .....+.+..++ +
T Consensus        27 ~~~i~~g~~VLDiG~-Gt-G~~~~~l~~~~~~~~~v~~vDis~~~----~-~~~i~~~~~d~~~~-~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGA-AP-GGWSQVAVEQVGGKGRVIAVDLQPMK----P-IENVDFIRGDFTDE-EVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecC-CC-CHHHHHHHHHhCCCceEEEEeccccc----c-CCCceEEEeeCCCh-hHHHHHHHHhCCCC
Confidence            345789999999996 44 44455555544 3 489999988643    1 223321 1233333 344455554544 8


Q ss_pred             ccEEEe-CC----C-------------hhhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFE-NV----G-------------GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d-~~----g-------------~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+. ..    |             ...+..+.+.|+|+|+++....
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            999994 21    2             1356778899999999887543

>TIGR02415 23BDH acetoin reductases

Probab=96.80  E-value=0.0091  Score=47.50  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCccE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      ++++|+|++|++|..+++.+...|++|+.+.+++++.+.+.++   .+.. .  ..|..+.+...+.+.+..  .+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3689999999999999999999999999999887655433212   2321 1  224444323333333321  136899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9998873

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK00811 spermidine synthase; Provisional

Probab=96.80  E-value=0.017  Score=46.95  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=62.4

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC-----C--CeeeecCChhhHHHHHHHHCCCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFG-----F--DEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g-----~--~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+.++||++|+  |.|..+..++++.+. +|.++..+++-.+.+++.+.     .  +.-+..... +....++. ..+.
T Consensus        75 ~~p~~VL~iG~--G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~-Da~~~l~~-~~~~  150 (283)
T PRK00811         75 PNPKRVLIIGG--GDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG-DGIKFVAE-TENS  150 (283)
T ss_pred             CCCCEEEEEec--CchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC-chHHHHhh-CCCc
Confidence            35678999995  447778888887665 89999999988888874332     1  111111111 33334443 3448


Q ss_pred             ccEEEeCC-C----------hhhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYFENV-G----------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~d~~-g----------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+|+--. .          .+.+..+.+.|+++|.++.-
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            99887432 1          12357888999999998864

>PLN02366 spermidine synthase

Probab=96.78  E-value=0.018  Score=47.25  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------CeeeecCChhhHHHHHHHHCCCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF------DEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+.++||++|+ | -|..+..++++-+. +|.++..+++-.+.+++.+..      +.-+..... +....+++..++.+
T Consensus        90 ~~pkrVLiIGg-G-~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~-Da~~~l~~~~~~~y  166 (308)
T PLN02366         90 PNPKKVLVVGG-G-DGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG-DGVEFLKNAPEGTY  166 (308)
T ss_pred             CCCCeEEEEcC-C-ccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC-hHHHHHhhccCCCC
Confidence            45788999996 3 36677788887664 899999888877777733321      111111111 33344444323479


Q ss_pred             cEEE-eCCC---------h-hhHHhHHHhhhcCCEEEEE
Q 024411          151 DIYF-ENVG---------G-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       151 d~v~-d~~g---------~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      |+|+ |+..         . +.+..+.+.|+|+|.++.-
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            9886 4332         1 3477889999999998764

>PLN02476 O-methyltransferase

Probab=96.78  E-value=0.023  Score=45.71  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHH--
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRY--  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~--  145 (268)
                      ...+..+.++||=+|  .++|..++.+++.++  .+|+.+..+++..+.+++   +.|..+.+..... +..+.+.+.  
T Consensus       112 ~L~~~~~ak~VLEIG--T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~~  188 (278)
T PLN02476        112 MLVQILGAERCIEVG--VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG-LAAESLKSMIQ  188 (278)
T ss_pred             HHHHhcCCCeEEEec--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHh
Confidence            345667789999998  567888888888764  489999999988877763   3355432222222 333333332  


Q ss_pred             -C-CCCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEEc
Q 024411          146 -F-PEGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       146 -~-~~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~g  179 (268)
                       . .+.||.+| |..-.   ..++.++++|+++|.++.-.
T Consensus       189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence             1 23799886 54432   45788999999999887643

>PLN00015 protochlorophyllide reductase

Probab=96.78  E-value=0.011  Score=48.81  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             EEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC--Ce----eeecCChhhHHHHHHHHC--CCCccEEE
Q 024411           84 FISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF--DE----AFNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        84 lI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~--~~----v~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      +|+||++++|..+++.+...| ++|++++++.++.+.+.++++.  ..    ..|..+.+.....+.+..  .+.+|+++
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            589999999999999888899 8999999988776655434432  11    234444323333333322  23689999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus        81 nnAG   84 (308)
T PLN00015         81 CNAA   84 (308)
T ss_pred             ECCC
Confidence            9887

>PRK05855 short chain dehydrogenase; Validated

Probab=96.77  E-value=0.0078  Score=54.05  Aligned_cols=81  Identities=17%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .+.++||+||+|++|..+++.+...|++|++++++.++.+.+.+.   .|.. .  ..|..+.+...+.+.+..  .+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999999988766554322   2332 1  234444323333333321  2368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999874

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.77  E-value=0.011  Score=48.55  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=69.1

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----Cee----eecCChhhHHHHHHHHC--C
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF----DEA----FNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~----~~v----~~~~~~~~~~~~~~~~~--~  147 (268)
                      -.+.+++|+|+++|+|..++.-+...|++|+.++|+.++.+.+.++...    ..+    .|.....+...+..+..  .
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~  112 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE  112 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence            3567999999999999999999999999999999998776665544432    222    23333212333333322  2


Q ss_pred             CCccEEEeCCChh------------------------hHHhHHHhhhcC--CEEEEEcccc
Q 024411          148 EGIDIYFENVGGK------------------------LLDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       148 ~~~d~v~d~~g~~------------------------~~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                      ...|+.++++|--                        .....++.|+..  +|+|.+.+..
T Consensus       113 ~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~  173 (314)
T KOG1208|consen  113 GPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSIL  173 (314)
T ss_pred             CCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCcc
Confidence            2789999888721                        134455556643  7999887643

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.77  E-value=0.089  Score=46.13  Aligned_cols=173  Identities=13%  Similarity=0.110  Sum_probs=93.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc----CCCe---ee-ecCChhhHHHHHHHHCCC-
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF----GFDE---AF-NYKEEADLNAALKRYFPE-  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~----g~~~---v~-~~~~~~~~~~~~~~~~~~-  148 (268)
                      .|++|||+||+|++|...+.-....+. +++...+++-++.....++    +...   .+ |.++.    +.+.+...+ 
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~----~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDR----DRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccH----HHHHHHHhcC
Confidence            589999999999999776554444466 8888888777665544333    3221   11 33322    234444445 


Q ss_pred             CccEEEeCCChhh------------------HHhHHHhhhcCC--EEEEEcccccc-cCCCCccccchHHH----Hhc--
Q 024411          149 GIDIYFENVGGKL------------------LDAVLPNMKIRG--RIAACGMISQY-NLDKPEGVHNLMYL----VSK--  201 (268)
Q Consensus       149 ~~d~v~d~~g~~~------------------~~~~~~~l~~~G--~~v~~g~~~~~-~~~~~~~~~~~~~~----~~~--  201 (268)
                      ++|+||.++.-++                  ..+..+.....|  ++|.+...--. +.+.....+...+.    ..+  
T Consensus       325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~~~~~  404 (588)
T COG1086         325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAANRNV  404 (588)
T ss_pred             CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHHHHHHHHhhcc
Confidence            7999998775321                  223333333444  56666431100 01111111111111    112  


Q ss_pred             ---ceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhc--ccccHHHHHHHHHc
Q 024411          202 ---RLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE--GLESAPAALIGLFS  255 (268)
Q Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~--~~~~~~~a~~~~~~  255 (268)
                         +-++...+.++............-+++++|.--+..+..+  -|=-++||.+..-+
T Consensus       405 ~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlq  463 (588)
T COG1086         405 SGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQ  463 (588)
T ss_pred             CCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHH
Confidence               2446666777775556677888888999984433322222  25567777776543

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.011  Score=46.15  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .++||+||+|++|..++..+... .+|+++.++.++.+.+.+.....+++  |..+.+.+.+.+...  +++|.++.++|
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi~~ag   80 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL--GRLDVLVHNAG   80 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc--CCCCEEEECCC
Confidence            57999999999999988877766 99999999887765554222212222  333321233323221  26999999887


Q ss_pred             h
Q 024411          159 G  159 (268)
Q Consensus       159 ~  159 (268)
                      .
T Consensus        81 ~   81 (227)
T PRK08219         81 V   81 (227)
T ss_pred             c
Confidence            4

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.75  E-value=0.0089  Score=47.34  Aligned_cols=81  Identities=22%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHH-HHHHH--hcCCCee---eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKV-DLLKN--KFGFDEA---FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~-~~~~~--~~g~~~v---~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++.++|+|++|++|..+++.+...|++|++..+ +..+. +.+.+  ..+....   .|..+.++..+.+.+..  .++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            3578999999999999999999999999888653 23222 22220  2333221   24443323333333221  137


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.74  E-value=0.014  Score=45.85  Aligned_cols=70  Identities=23%  Similarity=0.344  Sum_probs=50.1

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCCee-eecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD--KVDLLKNKFGFDEA-FNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~--~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      |+|+||+|.+|..+++.+...+.+|.+.+|+..  ..+.++ ..|+..+ .|+++.+.+.+.+    . ++|.||.+.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~-~~g~~vv~~d~~~~~~l~~al----~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQ-ALGAEVVEADYDDPESLVAAL----K-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHH-HTTTEEEES-TT-HHHHHHHH----T-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhh-cccceEeecccCCHHHHHHHH----c-CCceEEeecC
Confidence            789999999999999999998899999998764  355566 6777533 3444332333333    2 5999998887

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.014  Score=53.45  Aligned_cols=79  Identities=22%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +.+++|+||+|++|..++..+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+.....+.+..  .+.+|
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  450 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVD  450 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999899999999999988765543232   222 1  224444323333333321  23699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      +++.++|
T Consensus       451 ~li~~Ag  457 (657)
T PRK07201        451 YLVNNAG  457 (657)
T ss_pred             EEEECCC
Confidence            9999887

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.019  Score=45.83  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .+.++||+||+|++|..+++.+...|++|+++.+. .++.+.+.+++   +.. .  ..|..+.+...+.+.+..  .+.
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999999887653 33333322122   332 1  224444323333333221  236


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        88 iD~vi~~ag~   97 (258)
T PRK09134         88 ITLLVNNASL   97 (258)
T ss_pred             CCEEEECCcC
Confidence            9999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.70  E-value=0.0071  Score=46.52  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=69.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHH--
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRY--  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~--  145 (268)
                      .+.+..+.++||=+|  .++|..++.++..+  +.+|+.+..+++..+.+++   +.|....+..... +..+.+.++  
T Consensus        39 ~l~~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~~~l~~l~~  115 (205)
T PF01596_consen   39 MLVRLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DALEVLPELAN  115 (205)
T ss_dssp             HHHHHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHHHHHHHHH
T ss_pred             HHHHhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccHhhHHHHHh
Confidence            344556678999999  57799999999876  5699999999998888763   3354332222222 233333332  


Q ss_pred             -C-CCCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEEcc
Q 024411          146 -F-PEGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 -~-~~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       . .+.||+|| |+.-.   ..+..++++|+++|.++.-..
T Consensus       116 ~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  116 DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             ccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence             2 23799886 65433   457788899999998887643

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.70  E-value=0.012  Score=43.64  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--DEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      .|.|+||+|-+|...++=|+..|.+|+++.|++++....+ ..-.  ..+++..   .+.+.+     .++|+|+++.|.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~~i~q~Difd~~---~~a~~l-----~g~DaVIsA~~~   72 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ-GVTILQKDIFDLT---SLASDL-----AGHDAVISAFGA   72 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc-cceeecccccChh---hhHhhh-----cCCceEEEeccC
Confidence            4789999999999999999999999999999999876543 1111  1133222   222222     269999998874


Q ss_pred             h----------hHHhHHHhhhcC--CEEEEEccccc
Q 024411          160 K----------LLDAVLPNMKIR--GRIAACGMISQ  183 (268)
Q Consensus       160 ~----------~~~~~~~~l~~~--G~~v~~g~~~~  183 (268)
                      .          .....+..|+.-  -|+..+|..++
T Consensus        73 ~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGS  108 (211)
T COG2910          73 GASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGS  108 (211)
T ss_pred             CCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence            2          123355555552  37888887553

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.69  E-value=0.073  Score=43.00  Aligned_cols=95  Identities=14%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ...+++++|+|+ |++|.+++..+...|++|+++.++.++.+.+.+.+... .+...    .+..    .....+|++++
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~----~~~~----~~~~~~DivIn  184 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF----SMDE----LPLHRVDLIIN  184 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe----chhh----hcccCccEEEE
Confidence            345788999998 89999999888888999999999988766554344321 11111    1111    11125899999


Q ss_pred             CCChh---hH---HhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGK---LL---DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~---~~---~~~~~~l~~~G~~v~~g~  180 (268)
                      |++..   ..   ......++++..++.+..
T Consensus       185 atp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       185 ATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            98752   11   112345666666666643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.68  E-value=0.0096  Score=49.97  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-e--eeecCChhhHHHHHHHHCCCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D-E--AFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~-~--v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      ++.+|||+||+|.+|..+++.+...|.+|+++.+++.......+.++.  . .  ..|..+.+.+...+.+   .++|++
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~d~v   79 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE---FKPEIV   79 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh---cCCCEE
Confidence            467899999999999999999999999999998766533222112221  1 1  1233332123222222   158999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.+++
T Consensus        80 ih~A~   84 (349)
T TIGR02622        80 FHLAA   84 (349)
T ss_pred             EECCc
Confidence            99887

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.66  E-value=0.0075  Score=48.07  Aligned_cols=98  Identities=17%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-CeeeecCChhhHHHHHHHHCCCCccEEE-e
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DEAFNYKEEADLNAALKRYFPEGIDIYF-E  155 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~v~-d  155 (268)
                      .+.++|||+||  |=|.++-.++|+-. +|..+.-.++-.+..++-+.. ...++...- .+...+.+...+.+|+|+ |
T Consensus        71 ~~pk~VLIiGG--GDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv-~l~~~~~~~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDG--FDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNF-THAKQLLDLDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcC--CchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCE-EEeehhhhccCCcCCEEEEc
Confidence            34588999994  45778889999865 999999888878877732321 011111111 111123333334799776 7


Q ss_pred             CCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          156 NVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       156 ~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.-. +.++.+.++|+++|.++.-.
T Consensus       147 s~~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QEPDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CCCChHHHHHHHHhcCCCcEEEECC
Confidence            5555 67789999999999988753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.66  E-value=0.037  Score=41.16  Aligned_cols=93  Identities=15%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGA-VGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~-~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      .|+....+...+.....--.+.+++|.|+ |. +|..++.+++..|++|+++.++.+                     ++
T Consensus        24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l   81 (168)
T cd01080          24 IPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTK---------------------NL   81 (168)
T ss_pred             cCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCch---------------------hH
Confidence            34444445555544433467899999998 65 699999999999999888886522                     22


Q ss_pred             HHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          139 NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.+.     .+|+|+.+++.+.+ -..+.++++-.++.++.
T Consensus        82 ~~~l~-----~aDiVIsat~~~~i-i~~~~~~~~~viIDla~  117 (168)
T cd01080          82 KEHTK-----QADIVIVAVGKPGL-VKGDMVKPGAVVIDVGI  117 (168)
T ss_pred             HHHHh-----hCCEEEEcCCCCce-ecHHHccCCeEEEEccC
Confidence            22333     27889988887432 22234555555666655

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.64  E-value=0.038  Score=40.36  Aligned_cols=94  Identities=21%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .++.+++|+|+ |++|...++.+...| .+|++..++.++.+.+.++++... .....   +..+.     -+++|+++.
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEEL-----LAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhc-----cccCCEEEe
Confidence            45688999997 999999999988886 689999998887766553555421 01111   21111     135999999


Q ss_pred             CCChhhH-----HhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLL-----DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~-----~~~~~~l~~~G~~v~~g~  180 (268)
                      |++....     ......++++..++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~  117 (155)
T cd01065          88 TTPVGMKPGDELPLPPSLLKPGGVVYDVVY  117 (155)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEcCc
Confidence            9886332     222344566666666644

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.62  E-value=0.036  Score=44.78  Aligned_cols=93  Identities=17%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||.....+..+....---.|++++|.|.+.-+|.-+..++...|++|++..+...                     ++.
T Consensus       138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~  196 (286)
T PRK14175        138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMA  196 (286)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHH
Confidence            45555555555544332357899999999666999999999999999998885321                     222


Q ss_pred             HHHHHHCCCCccEEEeCCChhh-HHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKL-LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++     .+|+++.++|.+. +..  +.++++..++.+|.
T Consensus       197 ~~~~-----~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi  231 (286)
T PRK14175        197 SYLK-----DADVIVSAVGKPGLVTK--DVVKEGAVIIDVGN  231 (286)
T ss_pred             HHHh-----hCCEEEECCCCCcccCH--HHcCCCcEEEEcCC
Confidence            2333     2899999999753 333  45788877788776

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.62  E-value=0.01  Score=50.64  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=53.4

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH------HHHHhc-CCCe-eeecCChhhHHHHHHHHCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD------LLKNKF-GFDE-AFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~------~~~~~~-g~~~-v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...+.+|||+||+|.+|..++..+...|.+|++++++..+.+      ...+.. +... ..|..+.+.+...++.. +.
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~  135 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-GD  135 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-CC
Confidence            456779999999999999999999999999999998765421      111011 2221 23444432344334332 11


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|+|++|++.
T Consensus       136 ~~D~Vi~~aa~  146 (390)
T PLN02657        136 PVDVVVSCLAS  146 (390)
T ss_pred             CCcEEEECCcc
Confidence            69999998863

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.62  E-value=0.035  Score=45.14  Aligned_cols=71  Identities=23%  Similarity=0.140  Sum_probs=49.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC----CeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF----DEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      .+.+++|+|+ |+.|.+++..+...|+ +|+++.++.++.+.+.+.++.    ..+....   ++.+.+     ..+|++
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~---~~~~~~-----~~aDiV  196 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS---DLAAAL-----AAADGL  196 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc---chHhhh-----CCCCEE
Confidence            4578999998 9999999999999998 899999998887766534422    1122111   221112     248999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++|+.
T Consensus       197 InaTp  201 (284)
T PRK12549        197 VHATP  201 (284)
T ss_pred             EECCc
Confidence            99964

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.61  E-value=0.093  Score=34.83  Aligned_cols=86  Identities=20%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC---CEEEEE-eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG---CYVVGS-AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g---~~V~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +|.|+|+ |.+|.+++.-+...|   .+|+.+ .+++++.+.+.++++......     +..+.+++     .|++|-|+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----advvilav   69 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD-----DNEEAAQE-----ADVVILAV   69 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE-----EHHHHHHH-----TSEEEE-S
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC-----ChHHhhcc-----CCEEEEEE
Confidence            4667786 999999999999999   799955 899999888875776432221     22333433     79999999


Q ss_pred             ChhhHHhHHHhh---hcCCEEEEE
Q 024411          158 GGKLLDAVLPNM---KIRGRIAAC  178 (268)
Q Consensus       158 g~~~~~~~~~~l---~~~G~~v~~  178 (268)
                      -...+...++.+   .++..++.+
T Consensus        70 ~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   70 KPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             -GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHhhccCCCEEEEe
Confidence            987666665555   344445443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.60  E-value=0.021  Score=45.43  Aligned_cols=79  Identities=13%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHCC--CCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYFP--EGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d  151 (268)
                      +.++|+|++|++|..++..+...|++|++++++.. ..+...+.   .+.. .  ..|..+.+++.+.+.+...  +.+|
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID   82 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999986543 22222112   2221 1  2344443233333333321  3689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.+.|.
T Consensus        83 ~vi~~ag~   90 (256)
T PRK12745         83 CLVNNAGV   90 (256)
T ss_pred             EEEECCcc
Confidence            99998873

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.58  E-value=0.034  Score=44.81  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ...+++++|+|+ ||.+.+++..++.+|+ +|+++.|++++.+.+.+.++..          +...+.   ...+|++++
T Consensus       119 ~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----------~~~~~~---~~~~dlvIN  184 (272)
T PRK12550        119 VPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----------WRPDLG---GIEADILVN  184 (272)
T ss_pred             CCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----------chhhcc---cccCCEEEE
Confidence            445568999997 9999999999999998 7999999998877766344311          111111   125899999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      |+.
T Consensus       185 aTp  187 (272)
T PRK12550        185 VTP  187 (272)
T ss_pred             CCc
Confidence            876

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.58  E-value=0.023  Score=50.04  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++++++|+|. |..|++++++++..|++|++.+..+.+.+.++ +.|... +...   .....+.     .+|+|+.+
T Consensus         9 ~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~-~~g~~~-~~~~---~~~~~l~-----~~D~VV~S   77 (488)
T PRK03369          9 LLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCDDDPDALRPHA-ERGVAT-VSTS---DAVQQIA-----DYALVVTS   77 (488)
T ss_pred             ccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-hCCCEE-EcCc---chHhHhh-----cCCEEEEC
Confidence            557889999997 99999999999999999999997766666666 666632 2211   1112222     37999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      .|-
T Consensus        78 pGi   80 (488)
T PRK03369         78 PGF   80 (488)
T ss_pred             CCC
Confidence            874

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.57  E-value=0.013  Score=47.51  Aligned_cols=75  Identities=12%  Similarity=-0.028  Sum_probs=51.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ++.+++|+|+ |+.+.+++..+..+|+ +|+++.|+.++.+.+.+.++.. .+....   .. +.+.... ..+|+|++|
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~---~~-~~~~~~~-~~~DiVIna  197 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE---GD-SGGLAIE-KAAEVLVST  197 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc---ch-hhhhhcc-cCCCEEEEC
Confidence            5778999997 9999999999999998 8999999998877765455421 111111   00 1111111 258999999


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      ++.
T Consensus       198 Tp~  200 (282)
T TIGR01809       198 VPA  200 (282)
T ss_pred             CCC
Confidence            874

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.57  E-value=0.044  Score=44.52  Aligned_cols=46  Identities=17%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF  124 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~  124 (268)
                      ..+++++|+|+ ||.+.+++..+...|+ +++++.|+.++.+.+.+.+
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence            34678999998 9999999998888998 8999999988877765344

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.57  E-value=0.046  Score=43.32  Aligned_cols=105  Identities=12%  Similarity=0.102  Sum_probs=70.0

Q ss_pred             hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHH
Q 024411           71 FYEVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        71 l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      |....+..+.++||=+|  ..+|..++.+++.+  +.+|+.+..+++..+.+++   +.|...-+..... +..+.+.++
T Consensus        71 L~~l~~~~~ak~iLEiG--T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l  147 (247)
T PLN02589         71 LNMLLKLINAKNTMEIG--VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDQM  147 (247)
T ss_pred             HHHHHHHhCCCEEEEEe--ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec-cHHHHHHHH
Confidence            33345566778899998  57898899999876  4599999998887777653   3354333333332 334444443


Q ss_pred             C-----CCCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEE
Q 024411          146 F-----PEGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       146 ~-----~~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~  178 (268)
                      .     .+.||.+| |+--.   ..++.+++++++||.++.-
T Consensus       148 ~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        148 IEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            2     24799887 54432   4577889999999987753

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.56  E-value=0.021  Score=45.18  Aligned_cols=81  Identities=22%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      ++++++|+|++|++|..++..+...|++|+++.+ ++++.+...+.   .+.. ..  .|..+.+.+.+.+.+...  +.
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK   84 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999988889999987654 34433322212   2322 11  233333233333333222  35


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        85 id~vi~~ag~   94 (247)
T PRK12935         85 VDILVNNAGI   94 (247)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.56  E-value=0.014  Score=42.86  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=58.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhcCCCeeeecCC---hhhHHHHHHHHCC--CCcc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKNKFGFDEAFNYKE---EADLNAALKRYFP--EGID  151 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~--~~~d  151 (268)
                      .++-.-||+|+.+++|.++...+..+|+.|+..+-..++ .+.++ ++|...++...+   +.+....+...-.  |..|
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vak-elg~~~vf~padvtsekdv~aala~ak~kfgrld   85 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAK-ELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLD   85 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHH-HhCCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence            356667999999999999999999999999999876665 44555 898866654332   2144444443322  3689


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ..++|+|-
T Consensus        86 ~~vncagi   93 (260)
T KOG1199|consen   86 ALVNCAGI   93 (260)
T ss_pred             eeeeccce
Confidence            99999985

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.56  E-value=0.022  Score=45.77  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=48.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhc----CCC-e--eeecCChhhHH---HH-HHHH--C
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKNKF----GFD-E--AFNYKEEADLN---AA-LKRY--F  146 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~~~----g~~-~--v~~~~~~~~~~---~~-~~~~--~  146 (268)
                      ..++|+||++++|..+++.+...|++|+++++. +++.+.+.+++    +.. .  ..|..+.+...   +. +...  .
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            478999999999999999999999999988643 34443332233    111 1  22444321211   12 2221  1


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      .+++|+++.++|.
T Consensus        82 ~g~iD~lv~nAG~   94 (267)
T TIGR02685        82 FGRCDVLVNNASA   94 (267)
T ss_pred             cCCceEEEECCcc
Confidence            2369999998873

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.55  E-value=0.03  Score=43.23  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALKR  144 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~  144 (268)
                      +...++++++||-.|+  |.|..+..+++..+  .+|+.++.+++..+.+++.   .+..   .++..+    ..+.+..
T Consensus        66 ~~l~~~~~~~VLDiG~--GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d----~~~~~~~  139 (205)
T PRK13944         66 ELIEPRPGMKILEVGT--GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD----GKRGLEK  139 (205)
T ss_pred             HhcCCCCCCEEEEECc--CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC----cccCCcc
Confidence            4456788999999985  45878888887764  5999999998877666532   3332   122222    1111111


Q ss_pred             HCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          145 YFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                        .+.||.++-+... .......+.|+++|+++..
T Consensus       140 --~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        140 --HAPFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             --CCCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence              1379988865554 4446778899999998764

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.54  E-value=0.02  Score=45.47  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +++++||+|++|++|..++..+...|++|+++.++.     .. ..+.. .  ..|..+.+...+.+.+..  .+.+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----LT-QEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----hh-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            467899999999999999999999999999999775     22 22221 1  223333323333333322  1368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.+.|.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            998874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.54  E-value=0.03  Score=45.02  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCC-CCcc
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFP-EGID  151 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~-~~~d  151 (268)
                      ....+.++.+||=+|+ | .|..+..+++..+++|++++.++...+.+++.......+..... ++.   ....+ +.||
T Consensus        46 ~~l~l~~~~~VLDiGc-G-~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-D~~---~~~~~~~~FD  119 (263)
T PTZ00098         46 SDIELNENSKVLDIGS-G-LGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN-DIL---KKDFPENTFD  119 (263)
T ss_pred             HhCCCCCCCEEEEEcC-C-CChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEEC-Ccc---cCCCCCCCeE
Confidence            4457889999999986 3 46667777777788999999999888888733332111111111 111   11112 3699


Q ss_pred             EEEeC-----CC--h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFEN-----VG--G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~-----~g--~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+..     .+  .  ..+..+.+.|+|+|+++....
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            98852     12  2  357888999999999987654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.51  E-value=0.081  Score=36.77  Aligned_cols=97  Identities=21%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH---hcCCCe--eeecCChhhHHHHHHHHCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKN---KFGFDE--AFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..+.++++++-.|+ | .|..+..+++..+ .+|++++.++...+.+++   .++...  .+..+.    ...... ..+
T Consensus        15 ~~~~~~~~vldlG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~   87 (124)
T TIGR02469        15 LRLRPGDVLWDIGA-G-SGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA----PEALED-SLP   87 (124)
T ss_pred             cCCCCCCEEEEeCC-C-CCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc----cccChh-hcC
Confidence            35667889999996 4 4889999998875 599999999888777652   233332  222211    110111 123


Q ss_pred             CccEEEeCCCh----hhHHhHHHhhhcCCEEEEE
Q 024411          149 GIDIYFENVGG----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       149 ~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      .+|+++-..+.    ..++.+.+.|+++|+++..
T Consensus        88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        88 EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            69999865432    3678899999999998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=96.50  E-value=0.03  Score=46.48  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCCC--ee--eecCChhhHHHHHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKFGFD--EA--FNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      .+.++||+||+|.+|..+++.+...|  .+|++.+++..+...+.+.+...  ..  .|..+.+.+.+.+     .++|+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~-----~~iD~   77 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL-----RGVDY   77 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-----hcCCE
Confidence            36789999999999999988887765  68998887765544333233221  12  2434331222222     24899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      ++.++|.
T Consensus        78 Vih~Ag~   84 (324)
T TIGR03589        78 VVHAAAL   84 (324)
T ss_pred             EEECccc
Confidence            9998873

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.50  E-value=0.065  Score=40.64  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+.++.+||-.|+  |.|..++.+++. .+++|++++.+++..+.+++   +.+.+. +..... +..+ +..  .+.+|
T Consensus        42 ~l~~g~~VLDiGc--GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~-d~~~-~~~--~~~fD  114 (187)
T PRK00107         42 YLPGGERVLDVGS--GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHG-RAEE-FGQ--EEKFD  114 (187)
T ss_pred             hcCCCCeEEEEcC--CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEec-cHhh-CCC--CCCcc
Confidence            3556889999986  346666666654 45799999999887766652   344433 222221 2221 111  23799


Q ss_pred             EEEeCC-Ch--hhHHhHHHhhhcCCEEEEEc
Q 024411          152 IYFENV-GG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       152 ~v~d~~-g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|+-.. +.  ..+..+.+.|+|+|+++.+-
T Consensus       115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        115 VVTSRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            998543 32  46678899999999998773

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.49  E-value=0.025  Score=44.59  Aligned_cols=79  Identities=24%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHH---hcCCC-ee--eecCChhhHHHHHHHHCC--CCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKN---KFGFD-EA--FNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      ..++||+||+|++|..++..+...|++|+++.++..+ .+.+.+   ..+.. ..  .|..+.+++.+.+.+...  +++
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   85 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGRI   85 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999998886665442 222211   22221 11  244333233333333211  368


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |.++.++|
T Consensus        86 d~vi~~ag   93 (249)
T PRK12825         86 DILVNNAG   93 (249)
T ss_pred             CEEEECCc
Confidence            99999887

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.033  Score=45.00  Aligned_cols=46  Identities=22%  Similarity=0.339  Sum_probs=40.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g  125 (268)
                      ++++++|.|| ||.+.+++.-++..|+ +++++.|+.++.+.+.+.++
T Consensus       125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~  171 (283)
T COG0169         125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG  171 (283)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            5799999998 9999999999999997 89999999999887764554

>PRK01581 speE spermidine synthase; Validated

Probab=96.49  E-value=0.071  Score=44.54  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhc-C-------C--CeeeecCChhhHHHHHHHHC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKF-G-------F--DEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~-g-------~--~~v~~~~~~~~~~~~~~~~~  146 (268)
                      .+.++||++|+  |.|..+..++++-+ .+|+++..+++-.+.++ ++ .       .  +.-+..... +..+.+.. .
T Consensus       149 ~~PkrVLIIGg--GdG~tlrelLk~~~v~~It~VEIDpeVIelAr-~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~-~  223 (374)
T PRK01581        149 IDPKRVLILGG--GDGLALREVLKYETVLHVDLVDLDGSMINMAR-NVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS-P  223 (374)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hccccchhccccCCCCceEEEEC-cHHHHHHh-c
Confidence            44568999995  56777777887655 49999999998888888 42 1       1  111111111 33344443 3


Q ss_pred             CCCccEEE-eCCCh-----------hhHHhHHHhhhcCCEEEEEc
Q 024411          147 PEGIDIYF-ENVGG-----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 ~~~~d~v~-d~~g~-----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+.||+|+ |....           +.+..+.+.|+|+|.++.-.
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            34799886 53221           24678899999999987753

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.48  E-value=0.013  Score=45.22  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=62.5

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---hcCCCee-eecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKN---KFGFDEA-FNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~~~~~~  146 (268)
                      +...++++++||-+|+  |.|..++-+++..|.  +|+.+...++-.+.+++   .++...+ +...+  .. .-+.+  
T Consensus        66 ~~L~l~pg~~VLeIGt--GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd--g~-~g~~~--  138 (209)
T PF01135_consen   66 EALDLKPGDRVLEIGT--GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD--GS-EGWPE--  138 (209)
T ss_dssp             HHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GG-GTTGG--
T ss_pred             HHHhcCCCCEEEEecC--CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc--hh-hcccc--
Confidence            4456999999999994  568888888888775  79999988875555543   3455432 21211  11 11111  


Q ss_pred             CCCccEEEeCCChh-hHHhHHHhhhcCCEEEEE
Q 024411          147 PEGIDIYFENVGGK-LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       147 ~~~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~  178 (268)
                      .+.||.++-+.+-+ .-...++.|+++|++|..
T Consensus       139 ~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             G-SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             CCCcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence            12799998777764 446788889999999875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.47  E-value=0.028  Score=41.86  Aligned_cols=98  Identities=22%  Similarity=0.253  Sum_probs=63.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec----------C-------ChhhHHHHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY----------K-------EEADLNAAL  142 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~----------~-------~~~~~~~~~  142 (268)
                      ...|+|+|+ |.+|+.++.+++.+|++|++.+..+++.+... ..+...+...          +       .. .+...+
T Consensus        20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f   96 (168)
T PF01262_consen   20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDERPERLRQLE-SLGAYFIEVDYEDHLERKDFDKADYYEHPE-SYESNF   96 (168)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH-HTTTEESEETTTTTTTSB-CCHHHCHHHCC-HHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHhHCCCEEEeccCCHHHHHhhh-cccCceEEEcccccccccccchhhhhHHHH-HhHHHH
Confidence            367999997 99999999999999999999999988888777 6665432210          0       01 222233


Q ss_pred             HHHCCCCccEEEeC-C--Ch--h--hHHhHHHhhhcCCEEEEEccc
Q 024411          143 KRYFPEGIDIYFEN-V--GG--K--LLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       143 ~~~~~~~~d~v~d~-~--g~--~--~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      .+... .+|+++.+ .  +.  +  .....++.|+++..++.+...
T Consensus        97 ~~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D  141 (168)
T PF01262_consen   97 AEFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCD  141 (168)
T ss_dssp             HHHHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGG
T ss_pred             HHHHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEec
Confidence            22211 37888842 2  21  1  236788889988888888553

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08309 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.24  Score=37.20  Aligned_cols=91  Identities=14%  Similarity=0.112  Sum_probs=55.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---ee--eecCChhhHHHHHHHHC--CCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EA--FNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v--~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      +++|+||+ ++|..+++.+...|++|++..+++++.+.+...++..   ..  .|..+.+++...+....  .+.+|.++
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv   80 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAV   80 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            58999997 4555577777778999999999887766554233221   11  35555434555554432  23689998


Q ss_pred             eCCChhhHHhHHHhhhcCC
Q 024411          155 ENVGGKLLDAVLPNMKIRG  173 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G  173 (268)
                      +.+=...-......++..|
T Consensus        81 ~~vh~~~~~~~~~~~~~~g   99 (177)
T PRK08309         81 AWIHSSAKDALSVVCRELD   99 (177)
T ss_pred             EeccccchhhHHHHHHHHc
Confidence            8766544444444444433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.46  E-value=0.038  Score=45.06  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=30.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK  114 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~  114 (268)
                      .+++++|+|+ ||+|.+++..+...|+ +|+++.++.
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4678999998 8999999998889999 599999885

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.44  E-value=0.026  Score=44.59  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++||+||+|++|..++..+...|++|+++ .+++++.+...+   ..+.. .  ..|..+.+.+.+.+.+..  .+++|
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id   81 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA   81 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence            478999999999999999998999999875 455554433221   22321 1  234444324444444432  24799


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      .++.++|.
T Consensus        82 ~vi~~ag~   89 (247)
T PRK09730         82 ALVNNAGI   89 (247)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.051  Score=41.50  Aligned_cols=63  Identities=19%  Similarity=0.267  Sum_probs=41.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +++|+|+++++|..++..+... .+|+.+.++..           ....|..+.+.....+.+.  +++|+++.++|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D~~~~~~~~~~~~~~--~~id~lv~~ag   64 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVDITDPASIRALFEKV--GKVDAVVSAAG   64 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEecCCChHHHHHHHHhc--CCCCEEEECCC
Confidence            6899999999999888877766 89999887642           0122333321333333332  36888888876

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.42  E-value=0.022  Score=41.97  Aligned_cols=47  Identities=19%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~  126 (268)
                      .|..|+++|+..|+|...++-+...|++|+++.|+++++..+. +.-.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV-~e~p   52 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLV-KETP   52 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHH-hhCC
Confidence            5778999999999999999999999999999999999988876 4433

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.026  Score=44.70  Aligned_cols=80  Identities=20%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +.++||+|++|++|..+++.+...|++|+... +++++.+...+   ..+.. .  ..|..+.+.+.+.+.+..  .+.+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999988999887765 34443333221   22332 1  124443323444343322  1368


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |+++.++|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06123         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999998874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.41  E-value=0.063  Score=41.73  Aligned_cols=98  Identities=18%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---hcCCCe--eeecCChhhHHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKN---KFGFDE--AFNYKEEADLNAALKRY  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~  145 (268)
                      +...++++++||-.|+  |.|..+..+++..+.  +|+.++.+++..+.+++   +.+.+.  ++..+    ......  
T Consensus        71 ~~l~~~~~~~VLDiG~--GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d----~~~~~~--  142 (215)
T TIGR00080        71 ELLELKPGMKVLEIGT--GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD----GTQGWE--  142 (215)
T ss_pred             HHhCCCCcCEEEEECC--CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC----cccCCc--
Confidence            3456889999999985  557778888887654  79999999887776653   234432  22221    111111  


Q ss_pred             CCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          146 FPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       146 ~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      ..+.||+++-.... .......+.|+++|+++..
T Consensus       143 ~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       143 PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            11369988744333 4556778899999998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.40  E-value=0.017  Score=44.22  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=60.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHC-CCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYF-PEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~-~~~~d  151 (268)
                      ...++.+||-.|+  |.|..+..+++. |.+|++++.+++..+.+++..   +... ++.... ++.    +.. .+.||
T Consensus        27 ~~~~~~~vLDiGc--G~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~-d~~----~~~~~~~fD   97 (197)
T PRK11207         27 KVVKPGKTLDLGC--GNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVV-DLN----NLTFDGEYD   97 (197)
T ss_pred             ccCCCCcEEEECC--CCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEec-Chh----hCCcCCCcC
Confidence            3456678999986  457778888875 889999999998777665222   2221 111111 221    111 23699


Q ss_pred             EEEeCCC-----h----hhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFENVG-----G----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+.+..     .    ..+..+.+.|+|+|.++.+..
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~  135 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  135 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            9986532     1    346788889999999665543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.39  E-value=0.018  Score=44.68  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee------e---cCChhhHHHHHHHHC--
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF------N---YKEEADLNAALKRYF--  146 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~------~---~~~~~~~~~~~~~~~--  146 (268)
                      .++.++|+.|+  |.|.-++-+|. +|.+|++++.|+.-.+.+.++.+.....      .   ...-.-...++.+..  
T Consensus        33 ~~~~rvLd~GC--G~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLC--GKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCC--CchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            56779999996  46888888875 7999999999999887754243332100      0   000000011111111  


Q ss_pred             -CCCccEEEeCCC---------hhhHHhHHHhhhcCCEEEEEcc
Q 024411          147 -PEGIDIYFENVG---------GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 -~~~~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       .+.||.++|+..         ...+..+.++|+|+|+++....
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence             135899999653         1246789999999998776655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.38  E-value=0.027  Score=46.40  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC-CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF-PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~-~~~~  150 (268)
                      .+++++|+||++++|...++.+...|++|++.+++. .+.+.+.+   ..+...   ..|..+.+.....+.... .+.+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i   90 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL   90 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            467899999999999999999999999999987643 23322221   223221   123333212222222211 2479


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        91 D~li~nAG~   99 (306)
T PRK07792         91 DIVVNNAGI   99 (306)
T ss_pred             CEEEECCCC
Confidence            999998873

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.37  E-value=0.055  Score=45.96  Aligned_cols=93  Identities=23%  Similarity=0.328  Sum_probs=65.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      -.+.++||+|+ |-+|..++..+...|. +|++.-|+.++...+.+++|.. +...+   ++...+.     .+|+||-+
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~---el~~~l~-----~~DvViss  245 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE---ELLEALA-----EADVVISS  245 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH---HHHHhhh-----hCCEEEEe
Confidence            36788999998 9999999999999996 8999999999877766588843 33332   3344443     39999999


Q ss_pred             CChhh----HHhHHHhhhcCCE--EEEEcc
Q 024411          157 VGGKL----LDAVLPNMKIRGR--IAACGM  180 (268)
Q Consensus       157 ~g~~~----~~~~~~~l~~~G~--~v~~g~  180 (268)
                      ++.+.    .....+.+++.-+  ++.++.
T Consensus       246 Tsa~~~ii~~~~ve~a~~~r~~~livDiav  275 (414)
T COG0373         246 TSAPHPIITREMVERALKIRKRLLIVDIAV  275 (414)
T ss_pred             cCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence            88632    2344555555433  445544

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.36  E-value=0.028  Score=44.49  Aligned_cols=78  Identities=21%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++||+||+|++|..+++.+...|++|+++. +++++.+...+   ..+.. ..  .|..+.++....+.+..  .+.+|
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   82 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD   82 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence            5799999999999999999999999988765 44444333221   22322 11  23333213333333322  13689


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      +++.++|
T Consensus        83 ~li~~ag   89 (248)
T PRK06947         83 ALVNNAG   89 (248)
T ss_pred             EEEECCc
Confidence            9998887

>PLN00016 RNA-binding protein; Provisional

Probab=96.34  E-value=0.038  Score=46.97  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             CCcEEEEe----cCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH-----------HHHhcCCCeeeecCChhhHHHHHH
Q 024411           79 HGECVFIS----AASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL-----------LKNKFGFDEAFNYKEEADLNAALK  143 (268)
Q Consensus        79 ~~~~vlI~----ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~-----------~~~~~g~~~v~~~~~~~~~~~~~~  143 (268)
                      ...+|||+    ||+|.+|..++..+...|.+|+++++++.....           +. ..+.. .+..+-. +    +.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~-~v~~D~~-d----~~  123 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVK-TVWGDPA-D----VK  123 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh-hcCce-EEEecHH-H----HH
Confidence            34679999    999999999999999999999999987654221           11 12322 2222211 2    32


Q ss_pred             HHCCC-CccEEEeCCCh--hhHHhHHHhhhcCC--EEEEEccc
Q 024411          144 RYFPE-GIDIYFENVGG--KLLDAVLPNMKIRG--RIAACGMI  181 (268)
Q Consensus       144 ~~~~~-~~d~v~d~~g~--~~~~~~~~~l~~~G--~~v~~g~~  181 (268)
                      ..... ++|+|+++.+.  ......++.++..|  ++|.++..
T Consensus       124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~  166 (378)
T PLN00016        124 SKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA  166 (378)
T ss_pred             hhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence            22223 79999999874  33445556665433  68877654

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.027  Score=44.95  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS----KDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~----~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--  146 (268)
                      .+.+++|+|++|++|..+++.+...|++|++++++    .++.+.+.+   ..+.. .  ..|..+.++....+.+..  
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999999997776532    222222211   22322 1  234444323333333322  


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      .+.+|+++.++|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            1368999998874

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.30  E-value=0.23  Score=37.98  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCe--eeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKN---KFGFDE--AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~~  146 (268)
                      ....+.++++||=.|+  |.|..++.+++.. +.+|++++.+++..+.+++   +++...  ++..    +..+.+....
T Consensus        34 ~~l~~~~~~~VLDiG~--G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~----d~~~~~~~~~  107 (196)
T PRK07402         34 SQLRLEPDSVLWDIGA--GTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG----SAPECLAQLA  107 (196)
T ss_pred             HhcCCCCCCEEEEeCC--CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC----chHHHHhhCC
Confidence            4446778888888875  4566677777654 4699999999988777763   244432  2222    2222222221


Q ss_pred             CCCcc-EEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGID-IYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d-~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       ..+| ++++....  ..+..+.+.|+|+|+++....
T Consensus       108 -~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        108 -PAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             -CCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence             2234 44554332  567888999999999887743

>PLN03075 nicotianamine synthase; Provisional

Probab=96.28  E-value=0.037  Score=44.94  Aligned_cols=97  Identities=10%  Similarity=0.027  Sum_probs=65.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC----CeeeecCChhhHHHHHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGF----DEAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      +.++|+-.|. |..|+.++-+++.+  +.+++.++.+++..+.+++.+..    ..-+.+... +..+....  .+.||+
T Consensus       123 ~p~~VldIGc-Gpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~-Da~~~~~~--l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGS-GPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA-DVMDVTES--LKEYDV  198 (296)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC-chhhcccc--cCCcCE
Confidence            7788999996 88888888888655  34899999999988888743322    222223222 22221101  137999


Q ss_pred             EEeCC------Ch--hhHHhHHHhhhcCCEEEEEc
Q 024411          153 YFENV------GG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       153 v~d~~------g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+-.+      ..  ..+....+.|+|||.++.-.
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            98654      22  46789999999999877653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.28  E-value=0.042  Score=42.35  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+.+|||.|| |.+|..-++.+...|++|++++.... ....+. +.+.-..+. .   ++....  .  .++++|+-++
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-~~~~i~~~~-~---~~~~~d--l--~~~~lVi~at   77 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLA-EQGGITWLA-R---CFDADI--L--EGAFLVIAAT   77 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-HcCCEEEEe-C---CCCHHH--h--CCcEEEEECC
Confidence            4678999998 99999999999999999999875433 333333 333211221 1   111111  1  2589999999


Q ss_pred             Chh-hHHhHHHhhhcCCEEEEEc
Q 024411          158 GGK-LLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       158 g~~-~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.+ .-.......+..|..|...
T Consensus        78 ~d~~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        78 DDEELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEC
Confidence            985 4445666666778777653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.031  Score=43.80  Aligned_cols=101  Identities=16%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ..+++.+|++|+=.|  .|.|.+++.++...|.  +|+......+..+.+++.+   +....+.....     ++.+...
T Consensus        88 ~~~gi~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-----Dv~~~~~  160 (256)
T COG2519          88 ARLGISPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-----DVREGID  160 (256)
T ss_pred             HHcCCCCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-----ccccccc
Confidence            346789999998766  4558899999998876  9999998888877776433   44332222221     2222222


Q ss_pred             C-CccEE-EeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 E-GIDIY-FENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~-~~d~v-~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      + .+|.+ +|.-.. ..++.+.+.|+|+|+++.+..
T Consensus       161 ~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         161 EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence            2 68866 576666 889999999999999998854

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.024  Score=44.34  Aligned_cols=74  Identities=15%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             EEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CCC-ee--eecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           84 FISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--GFD-EA--FNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        84 lI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ||+||+|++|..+++.+...|++|+++++++++.+...+.+  +.. +.  .|..+.+.+...+.+.  +.+|.++.++|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~id~li~~ag   78 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA--GPFDHVVITAA   78 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc--CCCCEEEECCC
Confidence            58999999999999999999999999999877665544233  221 22  3444432333333332  36899999887


Q ss_pred             h
Q 024411          159 G  159 (268)
Q Consensus       159 ~  159 (268)
                      .
T Consensus        79 ~   79 (230)
T PRK07041         79 D   79 (230)
T ss_pred             C
Confidence            3

>PRK04457 spermidine synthase; Provisional

Probab=96.26  E-value=0.12  Score=41.60  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHCCCCccEE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      .+.++||.+|+  |.|..+..+++.. +.+++++..+++-.+.+++.++..   .-+..... +..+.+.+ .++.+|+|
T Consensus        65 ~~~~~vL~IG~--G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-Da~~~l~~-~~~~yD~I  140 (262)
T PRK04457         65 PRPQHILQIGL--GGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-DGAEYIAV-HRHSTDVI  140 (262)
T ss_pred             CCCCEEEEECC--CHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-CHHHHHHh-CCCCCCEE
Confidence            35678999996  3477888888776 459999999999999888555431   11111111 33444443 23479988


Q ss_pred             E-eCCC----------hhhHHhHHHhhhcCCEEEEE
Q 024411          154 F-ENVG----------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       154 ~-d~~g----------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      + |...          .+.+..+.+.|+|+|.++.-
T Consensus       141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            6 4321          14577889999999998763

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.26  E-value=0.088  Score=41.51  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHH
Q 024411           71 FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        71 l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      |....+..+.++||=.|  .+.|..++.+++.++  .+|+.++.+++..+.+++.   .|....+..... +..+.+.+.
T Consensus        60 L~~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l  136 (234)
T PLN02781         60 LSMLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS-DALSALDQL  136 (234)
T ss_pred             HHHHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHH
Confidence            33445677888999988  456777777777663  4999999999887777632   344322222222 333333332


Q ss_pred             C----CCCccEEEeCCC----hhhHHhHHHhhhcCCEEEEEc
Q 024411          146 F----PEGIDIYFENVG----GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       146 ~----~~~~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .    .+.||++|--..    ...+..+++++++||.++.-.
T Consensus       137 ~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            1    237998874332    246778899999999877643

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.25  E-value=0.072  Score=43.07  Aligned_cols=97  Identities=15%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCe------eeecCChhhHHHHHHHHCCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDE------AFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~------v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .++ ++|||+|  ||-|..+=.++++... +++.+.-.++-.+.+++.++...      .++.... +-.+.+++.. .+
T Consensus        75 ~~p-k~VLiiG--gGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~-Dg~~~v~~~~-~~  149 (282)
T COG0421          75 PNP-KRVLIIG--GGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID-DGVEFLRDCE-EK  149 (282)
T ss_pred             CCC-CeEEEEC--CCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec-cHHHHHHhCC-Cc
Confidence            344 5999998  5667778888888765 99999988888888885554322      1111112 4444555432 27


Q ss_pred             ccEEE-eCCCh----------hhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYF-ENVGG----------KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+|+ |+...          +.++.+.++|+++|.++.-
T Consensus       150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            99876 55432          3578999999999988876

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.24  E-value=0.02  Score=44.01  Aligned_cols=90  Identities=10%  Similarity=0.013  Sum_probs=55.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCeeeecCChhhHHH-HHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKFGFDEAFNYKEEADLNA-ALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~d~v~d~  156 (268)
                      .+.+|||.|| |.+|...+..+...|++|+++.+... ....+. ..+.. .+...   .+.. .+     .++|+|+-+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~-~~~~i-~~~~~---~~~~~~l-----~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLV-EEGKI-RWKQK---EFEPSDI-----VDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHH-hCCCE-EEEec---CCChhhc-----CCceEEEEc
Confidence            5678999998 99999999988889999998875432 222222 11211 11111   1111 11     258999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEc
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ++.+.++..+...+..+.++...
T Consensus        78 T~d~elN~~i~~~a~~~~lvn~~  100 (202)
T PRK06718         78 TNDPRVNEQVKEDLPENALFNVI  100 (202)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEC
Confidence            99876665555544555566553

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.036  Score=43.81  Aligned_cols=81  Identities=22%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG----SKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~----~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--  146 (268)
                      ++.+++|+||+|++|..++..+...|++|+++.+    +.++.+.+.++   .+.. ..  .|..+.+...+.+.+..  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999988654    23333322212   2222 11  23333313333333221  


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      .+++|.++.++|.
T Consensus        85 ~~~~d~vi~~ag~   97 (249)
T PRK12827         85 FGRLDILVNNAGI   97 (249)
T ss_pred             hCCCCEEEECCCC
Confidence            1368999998874

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.042  Score=43.44  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHH----H-CC-CCccE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKR----Y-FP-EGIDI  152 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~----~-~~-~~~d~  152 (268)
                      ++||+||+|++|..+++.+...|++|++++++.++. ... ..+...   ..|..+.+++...+.+    . .. +..|.
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~-~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS-LAA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh-hhh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            689999999999999999988999999999875532 122 333221   2344443233332222    1 12 26788


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      ++.++|
T Consensus        81 ~v~~ag   86 (243)
T PRK07023         81 LINNAG   86 (243)
T ss_pred             EEEcCc
Confidence            888776

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.21  E-value=0.043  Score=43.81  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             EEEEecCcchHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKL----LGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~----~g~~V~~~~~~~~~~~~~~  121 (268)
                      .++|+|+++++|..++..+..    .|++|+++.+++++.+.+.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~   45 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLK   45 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHH
Confidence            589999999999887765543    7999999999888766554

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PLN02823 spermine synthase

Probab=96.21  E-value=0.088  Score=43.81  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC------eeeecCChhhHHHHHHHHCCCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD------EAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~------~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +.++|||+|+  |-|..+..++++.+. +|.++..+++-.+.+++.++..      .-+..... +....+++ ..+.+|
T Consensus       103 ~pk~VLiiGg--G~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~-Da~~~L~~-~~~~yD  178 (336)
T PLN02823        103 NPKTVFIMGG--GEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIN-DARAELEK-RDEKFD  178 (336)
T ss_pred             CCCEEEEECC--CchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEC-hhHHHHhh-CCCCcc
Confidence            4568999995  446667778887655 8999999999888888544321      11111111 33344433 344899


Q ss_pred             EEE-eCCC-----------h-hhHH-hHHHhhhcCCEEEEE
Q 024411          152 IYF-ENVG-----------G-KLLD-AVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~-d~~g-----------~-~~~~-~~~~~l~~~G~~v~~  178 (268)
                      +|+ |...           . +.+. .+.+.|+++|.++.-
T Consensus       179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        179 VIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            876 5322           1 2355 678899999987754

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.20  E-value=0.026  Score=45.87  Aligned_cols=95  Identities=8%  Similarity=0.107  Sum_probs=60.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCC-CC-ccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFP-EG-IDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~-~~-~d~v~d~~g  158 (268)
                      +|+|+||+|.+|..+++.+...|.+|.+++|++++..    ..+.. ...|+.+.+.+...++.... .+ +|.++-+.+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~   76 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP   76 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence            4899999999999999999999999999999876432    22332 13455554244444432111 25 898887766


Q ss_pred             h-----hhHHhHHHhhhcCC--EEEEEcc
Q 024411          159 G-----KLLDAVLPNMKIRG--RIAACGM  180 (268)
Q Consensus       159 ~-----~~~~~~~~~l~~~G--~~v~~g~  180 (268)
                      .     ......++.++..|  ++|.++.
T Consensus        77 ~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        77 PIPDLAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             CCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence            3     12334445554444  6777654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.19  E-value=0.0085  Score=40.65  Aligned_cols=86  Identities=17%  Similarity=0.295  Sum_probs=56.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|||.|+ |.+|..-++.+...|++|++++...   ....   +.-..   ... .+...+     .++++|+-+.+
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~---~~~~---~~i~~---~~~-~~~~~l-----~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI---EFSE---GLIQL---IRR-EFEEDL-----DGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE---HHHH---TSCEE---EES-S-GGGC-----TTESEEEE-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch---hhhh---hHHHH---Hhh-hHHHHH-----hhheEEEecCC
Confidence            4688999998 9999999999999999999999765   2222   11111   111 331111     25999999999


Q ss_pred             hhhH-HhHHHhhhcCCEEEEEcc
Q 024411          159 GKLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.+ ....+..+..|.++....
T Consensus        70 d~~~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   70 DPELNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             -HHHHHHHHHHHHHTTSEEEETT
T ss_pred             CHHHHHHHHHHHhhCCEEEEECC
Confidence            8555 456666666898888755

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.19  E-value=0.19  Score=34.66  Aligned_cols=91  Identities=20%  Similarity=0.131  Sum_probs=60.8

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh--
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK--  160 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  160 (268)
                      |+|.|. |.+|..+++.++..+.+|++++.++++.+.++ +.+.. ++..+.  .-...+++..-..++.++-+.+..  
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-~~~~~-~i~gd~--~~~~~l~~a~i~~a~~vv~~~~~d~~   75 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELR-EEGVE-VIYGDA--TDPEVLERAGIEKADAVVILTDDDEE   75 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTSE-EEES-T--TSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-hcccc-cccccc--hhhhHHhhcCccccCEEEEccCCHHH
Confidence            578887 99999999999997779999999999999988 66643 444433  223344444333788888777753  


Q ss_pred             h--HHhHHHhhhcCCEEEEE
Q 024411          161 L--LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       161 ~--~~~~~~~l~~~G~~v~~  178 (268)
                      .  +....+.+.+..+++..
T Consensus        76 n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   76 NLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence            2  22344445566666654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.18  E-value=0.034  Score=43.58  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      |||+||+|-+|..++..+...|.+|+.+.++.........+.... ...|..+.+.+.+.+...   .+|.|+.+++.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~---~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKA---NIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHH---TESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeecccccccccccccc---CceEEEEeecc
Confidence            799999999999999999999999998887776554443123322 233554432344444332   68999998874

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.17  E-value=0.068  Score=44.05  Aligned_cols=89  Identities=18%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+|.|+|+ |.+|...+..++..|.  +|++.++++++.+.++ +.|.......    +..+.+     ..+|+|+.|+.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~----~~~~~~-----~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTT----SAAEAV-----KGADLVILCVP   75 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecC----CHHHHh-----cCCCEEEECCC
Confidence            57999996 9999999999888885  8999999998888887 6765321111    222222     24899999988


Q ss_pred             hhhH----HhHHHhhhcCCEEEEEcc
Q 024411          159 GKLL----DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~~~~----~~~~~~l~~~G~~v~~g~  180 (268)
                      ....    ......++++..++.++.
T Consensus        76 ~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            6432    333344556666666654

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.16  E-value=0.084  Score=43.87  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHH-HcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           78 KHGECVFISAASGAVGQLVGQFAK-LLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~-~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      -.+.+|+|+||+|.+|..+++.+. ..|. +++.+.++..+...+.++++...+.      ++.+.+.     .+|+|+.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~------~l~~~l~-----~aDiVv~  221 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL------SLEEALP-----EADIVVW  221 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH------hHHHHHc-----cCCEEEE
Confidence            467899999999999999888886 4565 8999998887777665344322111      2222221     4899999


Q ss_pred             CCCh-hhHHhHHHhhhcCCEEEEEccc
Q 024411          156 NVGG-KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       156 ~~g~-~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      +++. ..+..-...+++.-.++.++.+
T Consensus       222 ~ts~~~~~~I~~~~l~~~~~viDiAvP  248 (340)
T PRK14982        222 VASMPKGVEIDPETLKKPCLMIDGGYP  248 (340)
T ss_pred             CCcCCcCCcCCHHHhCCCeEEEEecCC
Confidence            8886 4322222455666666777663

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.053  Score=43.04  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLK  121 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~  121 (268)
                      ++++|+||+|++|..+++.+...|++|+++++++ ++.+.+.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~   43 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA   43 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence            4799999999999999999998999999999876 3444333

>PLN02686 cinnamoyl-CoA reductase

Probab=96.15  E-value=0.052  Score=45.95  Aligned_cols=45  Identities=11%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      ...+++|||+||+|.+|..++..+...|++|+++.++.++.+.+.
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356789999999999999999999999999998887766554443

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=96.12  E-value=0.052  Score=39.48  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-----hhhHHHHHHHHCCC-CccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE-----EADLNAALKRYFPE-GIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~~~~~~~~~~~-~~d~v  153 (268)
                      ..+|+|.|+-|.+|.+.++..|.-++-|..++-++.+..      ....+++.++     ++...+++.+...+ ++|.|
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A------d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav   76 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA------DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV   76 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc------cceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence            357999999999999999999999998888876544222      2223344333     11344455555666 99999


Q ss_pred             EeCCCh-hh--------------------------HHhHHHhhhcCCEEEEEccc
Q 024411          154 FENVGG-KL--------------------------LDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       154 ~d~~g~-~~--------------------------~~~~~~~l~~~G~~v~~g~~  181 (268)
                      |..+|+ ..                          ...+..+|+++|-+-+.|..
T Consensus        77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAk  131 (236)
T KOG4022|consen   77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAK  131 (236)
T ss_pred             EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccc
Confidence            987764 10                          22345578899988877753

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.12  E-value=0.038  Score=44.10  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=30.4

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      .++++||+||++  ++|..++..+...|++|++++++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            357899999984  89999998888889999999876

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.12  E-value=0.012  Score=46.65  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      |+|+||+|-+|..+++.++..|..|++++|++.+.+...   .. .+...    +   .+.+....++|+|++-+|.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~---~~-~v~~~----~---~~~~~~~~~~DavINLAG~   66 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL---HP-NVTLW----E---GLADALTLGIDAVINLAGE   66 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc---Cc-ccccc----c---hhhhcccCCCCEEEECCCC
Confidence            689999999999999999999999999999877665432   21 11111    1   1222111269999999885

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.11  E-value=0.028  Score=46.57  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      .++++||+||+|.+|..++..+...|++|+++.++..+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~   41 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKD   41 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcc
Confidence            46799999999999999999999999999888766553

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.10  E-value=0.11  Score=42.17  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      --.|++++|.|+++-+|..++.++...|++|++..+...                     ++.+.+     ..+|+++.+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~-----~~aDIvI~A  209 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELV-----KQADIIVGA  209 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHh-----ccCCEEEEc
Confidence            357889999998555999999999999998887764211                     122122     148999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcc
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|.+.+ --.+.++++..++.+|.
T Consensus       210 tG~~~~-v~~~~lk~gavViDvg~  232 (283)
T PRK14192        210 VGKPEL-IKKDWIKQGAVVVDAGF  232 (283)
T ss_pred             cCCCCc-CCHHHcCCCCEEEEEEE
Confidence            986432 22356888888888775

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.09  E-value=0.076  Score=39.05  Aligned_cols=88  Identities=10%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|+|.|| |.+|..-++.+...|++|+++.  ++..+.+. +++... ...+   .+.+.    .-.++|+|+-+++
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~~~l~-~l~~i~-~~~~---~~~~~----dl~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEICKEMK-ELPYIT-WKQK---TFSND----DIKDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccCHHHH-hccCcE-EEec---ccChh----cCCCceEEEECCC
Confidence            5688999998 9999999999888999999884  34334444 443211 1111   12111    0126899999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEE
Q 024411          159 GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~  178 (268)
                      .+.++......+..+.++..
T Consensus        80 d~e~N~~i~~~a~~~~~vn~   99 (157)
T PRK06719         80 QHAVNMMVKQAAHDFQWVNV   99 (157)
T ss_pred             CHHHHHHHHHHHHHCCcEEE
Confidence            87666555555444444443

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.09  E-value=0.051  Score=42.88  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcC---CC-ee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKFG---FD-EA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g---~~-~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++++|+|++|++|..+++.+...|++|+++++++. ......+.+.   .. ..  .|..+.+...+.+.+..  .+.+|
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id   82 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD   82 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47999999999999999999888999999998743 1221211222   11 12  23333313333333221  13699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++.++|.
T Consensus        83 ~vi~~ag~   90 (245)
T PRK12824         83 ILVNNAGI   90 (245)
T ss_pred             EEEECCCC
Confidence            99998873

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.08  E-value=0.081  Score=44.47  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CCC-eee--ecCChhhHHHHHHHHCCCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--GFD-EAF--NYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--g~~-~v~--~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      ..+.+|||+||+|.+|..+++.+...|.+|+++.++..+.+.+.+.+  +.. ..+  |..+. .   .+.+... ++|+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~---~~~~~~~-~~d~   82 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEE-G---SFDEAVK-GCDG   82 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCH-H---HHHHHHc-CCCE
Confidence            45678999999999999999999999999999988766544333122  111 122  22222 1   2222222 4899


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      |+.+++
T Consensus        83 Vih~A~   88 (353)
T PLN02896         83 VFHVAA   88 (353)
T ss_pred             EEECCc
Confidence            998876

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.08  E-value=0.087  Score=42.14  Aligned_cols=94  Identities=14%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC---eeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD---EAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .++.+||-.|+  |.|..+..+++. |.+|++++.+++..+.+++..   |..   .++..    +.. .+.....+.+|
T Consensus        43 ~~~~~vLDiGc--G~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~----d~~-~l~~~~~~~fD  114 (255)
T PRK11036         43 PRPLRVLDAGG--GEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC----AAQ-DIAQHLETPVD  114 (255)
T ss_pred             CCCCEEEEeCC--CchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc----CHH-HHhhhcCCCCC
Confidence            45678888885  567888888775 889999999999888776322   321   12221    121 12222234799


Q ss_pred             EEEeCC-----Ch--hhHHhHHHhhhcCCEEEEEc
Q 024411          152 IYFENV-----GG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       152 ~v~d~~-----g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|+...     ..  ..+..+.+.|+|+|.++.+-
T Consensus       115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            998532     22  45788999999999987653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.08  E-value=0.032  Score=46.24  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      .+++|||+||+|.+|..++..+...|.+|+++.++..+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            46799999999999999999998899999988877654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.07  E-value=0.17  Score=38.80  Aligned_cols=81  Identities=17%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+.+++|+|. |.+|..+++.+...|++|++.++++++.+.+.+.++.. .++..   ++   +    ...+|+++-|+
T Consensus        26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~---~l---~----~~~~Dv~vp~A   93 (200)
T cd01075          26 LEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPE---EI---Y----SVDADVFAPCA   93 (200)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcch---hh---c----cccCCEEEecc
Confidence            35789999998 89999999999999999999998888877776455542 33221   11   1    11488888665


Q ss_pred             Ch-hhHHhHHHhhh
Q 024411          158 GG-KLLDAVLPNMK  170 (268)
Q Consensus       158 g~-~~~~~~~~~l~  170 (268)
                      .+ ..-...++.++
T Consensus        94 ~~~~I~~~~~~~l~  107 (200)
T cd01075          94 LGGVINDDTIPQLK  107 (200)
T ss_pred             cccccCHHHHHHcC
Confidence            44 33344445554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.07  E-value=0.018  Score=48.07  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++.+|||+||+|.+|..+++.+...|.+|+++++.+.
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~   41 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSS   41 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccc
Confidence            4578999999999999999999999999999987543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.06  E-value=0.1  Score=40.69  Aligned_cols=102  Identities=11%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH------HH-------------HHHHHH---hcCCC-eeeecCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK------DK-------------VDLLKN---KFGFD-EAFNYKEE  135 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~------~~-------------~~~~~~---~~g~~-~v~~~~~~  135 (268)
                      ..+|+|.|. ||+|.+++..+...|. ++..++..+      .+             .+.+++   +..+. ++.-.++-
T Consensus        30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            467999998 9999999999999998 666665211      11             111111   11111 11111110


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCChh--hHHhHHHhhhcCCEEEEEccccc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGGK--LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                       -..+.+.++...++|+|+||..+-  -...+..|.+.+=.++..+..++
T Consensus       109 -~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         109 -ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             -hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence             122344555555899999999983  33444445555556666665443

>PRK06849 hypothetical protein; Provisional

Probab=96.02  E-value=0.1  Score=44.50  Aligned_cols=97  Identities=11%  Similarity=0.055  Sum_probs=61.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee--cCChhhHHHHHHHHCCC-CccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN--YKEEADLNAALKRYFPE-GIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~~~~-~~d~v~d  155 (268)
                      ...+|||+|+..+.|+.++..++..|.+|++++..+.......+.......+.  ..+.+.+.+.+.+.... ++|+++-
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP   82 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP   82 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            45789999998889999999999999999999977654332220111112221  11112567777776555 7999998


Q ss_pred             CCChh-hHHhHHHhhhcCCEE
Q 024411          156 NVGGK-LLDAVLPNMKIRGRI  175 (268)
Q Consensus       156 ~~g~~-~~~~~~~~l~~~G~~  175 (268)
                      +.... .+....+.+.++.++
T Consensus        83 ~~e~~~~~a~~~~~l~~~~~v  103 (389)
T PRK06849         83 TCEEVFYLSHAKEELSAYCEV  103 (389)
T ss_pred             CChHHHhHHhhhhhhcCCcEE
Confidence            77652 333444556665444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.02  E-value=0.6  Score=38.69  Aligned_cols=40  Identities=18%  Similarity=-0.012  Sum_probs=34.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL  120 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~  120 (268)
                      -.+|.|+|+ |.+|...++.+...|.+|++.+.+++..+.+
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~   46 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAAL   46 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            367999997 9999999999999999999999988765543

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.98  E-value=0.031  Score=46.81  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++|||+||+|.+|..+++.+...|.+|++++++.+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCc
Confidence            37999999999999999999999999999987653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.97  E-value=0.1  Score=40.14  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~  113 (268)
                      .+.+|+|.|+ |++|..+++.+...|. ++++++..
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3467999997 9999999999999998 88888754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=95.97  E-value=0.43  Score=37.06  Aligned_cols=186  Identities=14%  Similarity=0.103  Sum_probs=102.4

Q ss_pred             CCCCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCeee--ecCChhh---HHHHHHHHC
Q 024411           77 PKHGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDEAF--NYKEEAD---LNAALKRYF  146 (268)
Q Consensus        77 ~~~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~v~--~~~~~~~---~~~~~~~~~  146 (268)
                      +-.|++.||.|-.  .+++-..++.++.+|+++..+...+.   +.+.+-++++.+.++  |...++.   ...++++.-
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~   82 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW   82 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence            3468899998743  45677789999999999999987764   233333356665444  2222212   223333322


Q ss_pred             CCCccEEEeCCCh-h-----------------------------hHHhHHHhhhcCCEEEEEccccccc-CCCC------
Q 024411          147 PEGIDIYFENVGG-K-----------------------------LLDAVLPNMKIRGRIAACGMISQYN-LDKP------  189 (268)
Q Consensus       147 ~~~~d~v~d~~g~-~-----------------------------~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~------  189 (268)
                       |++|.++-+.+. +                             ..+.+..+|.++|.++.+......+ .+..      
T Consensus        83 -g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvA  161 (259)
T COG0623          83 -GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVA  161 (259)
T ss_pred             -CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHH
Confidence             268888776653 1                             1345667788899998876654421 1111      


Q ss_pred             --ccccch----HHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHc---CCccc
Q 024411          190 --EGVHNL----MYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFS---GQNVG  260 (268)
Q Consensus       190 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~---~~~~g  260 (268)
                        ..+...    ..+-.++++......++.+.....-+..+-.++....-..+..+....+++...--++.+   ...+|
T Consensus       162 KAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSdLssgiTG  241 (259)
T COG0623         162 KAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSDLSSGITG  241 (259)
T ss_pred             HHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcchhccccc
Confidence              011111    122245666666666655333333333333344443334444456667888776666654   34445


Q ss_pred             eEE
Q 024411          261 KQV  263 (268)
Q Consensus       261 kvv  263 (268)
                      .++
T Consensus       242 ei~  244 (259)
T COG0623         242 EII  244 (259)
T ss_pred             ceE
Confidence            443

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.96  E-value=0.068  Score=42.66  Aligned_cols=33  Identities=9%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEe
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSA  111 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~  111 (268)
                      +++++||+||+  +++|..++..+...|++|++++
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~   39 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY   39 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence            57899999998  4899999999999999999875

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.94  E-value=0.051  Score=42.64  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +||+|++|++|..++..+...|++|+++.++. ++.+...+   ..+.. .  ..|..+.+.+.+.+....  .+++|.+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            58999999999999999998999999998764 33222211   23421 1  234444312333232221  1368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.++|.
T Consensus        81 i~~ag~   86 (239)
T TIGR01830        81 VNNAGI   86 (239)
T ss_pred             EECCCC
Confidence            998874

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.94  E-value=0.061  Score=44.11  Aligned_cols=75  Identities=23%  Similarity=0.385  Sum_probs=53.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHhcC-CC---eee--ecCChhhHHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV---DLLKNKFG-FD---EAF--NYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~---~~~~~~~g-~~---~v~--~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+..|+|+||+|-+|..++..+...|++|.++.|++++.   +.++ ++. +.   ..+  |..+...|.+.+.     +
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~-~l~~a~~~l~l~~aDL~d~~sf~~ai~-----g   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLR-KLEGAKERLKLFKADLLDEGSFDKAID-----G   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHH-hcccCcccceEEeccccccchHHHHHh-----C
Confidence            567899999999999999999999999999999998863   3455 554 22   122  2222214444443     5


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|.||-++..
T Consensus        79 cdgVfH~Asp   88 (327)
T KOG1502|consen   79 CDGVFHTASP   88 (327)
T ss_pred             CCEEEEeCcc
Confidence            8999877653

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.93  E-value=0.17  Score=40.84  Aligned_cols=94  Identities=20%  Similarity=0.106  Sum_probs=64.6

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||.....+..|....---.|++++|.|.+..+|.-+..++...|+.|++..+...                     ++.
T Consensus       137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~---------------------~l~  195 (285)
T PRK14191        137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK---------------------DLS  195 (285)
T ss_pred             CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH---------------------HHH
Confidence            45555555555544322246999999999779999999999999999987753211                     222


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+++     +|+++-++|.+.+-. -+.++++..++.+|.
T Consensus       196 ~~~~~-----ADIvV~AvG~p~~i~-~~~vk~GavVIDvGi  230 (285)
T PRK14191        196 FYTQN-----ADIVCVGVGKPDLIK-ASMVKKGAVVVDIGI  230 (285)
T ss_pred             HHHHh-----CCEEEEecCCCCcCC-HHHcCCCcEEEEeec
Confidence            23332     789999998754422 456688888888876

>PRK08317 hypothetical protein; Provisional

Probab=95.92  E-value=0.087  Score=41.35  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc-CCCeeeecCChhhHHHHHHHHCCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKF-GFDEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ....+.++++||-.|+ | .|..+..++...+  .++++++.++...+.+++.. .....+..... +... . ....+.
T Consensus        13 ~~~~~~~~~~vLdiG~-G-~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~   87 (241)
T PRK08317         13 ELLAVQPGDRVLDVGC-G-PGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-DADG-L-PFPDGS   87 (241)
T ss_pred             HHcCCCCCCEEEEeCC-C-CCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-cccc-C-CCCCCC
Confidence            4457888999999997 4 3888889988873  59999999988888877321 11111111111 1110 0 011237


Q ss_pred             ccEEEeCC-----Ch--hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENV-----GG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~-----g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+-..     ..  ..+..+.++|+++|.++....
T Consensus        88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            89887532     22  467889999999999887653

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.92  E-value=0.039  Score=50.54  Aligned_cols=41  Identities=22%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDK  116 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~  116 (268)
                      ..+++.+|||+||+|-+|..+++.+... |.+|+++++....
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~  352 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA  352 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh
Confidence            3467889999999999999999888765 7899999976654

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.90  E-value=0.12  Score=41.71  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||.....+..|....---.|++++|.|.+..+|.-+..++...|+.|++..+..                    . ++.
T Consensus       138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------~-~l~  196 (285)
T PRK14189        138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------R-DLA  196 (285)
T ss_pred             cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------C-CHH
Confidence            4555555555554432234789999999988889999999999999998854211                    1 333


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++     ..|+++-++|.+.+-. -+.++++..++.+|.
T Consensus       197 ~~~~-----~ADIVV~avG~~~~i~-~~~ik~gavVIDVGi  231 (285)
T PRK14189        197 AHTR-----QADIVVAAVGKRNVLT-ADMVKPGATVIDVGM  231 (285)
T ss_pred             HHhh-----hCCEEEEcCCCcCccC-HHHcCCCCEEEEccc
Confidence            3333     2899999999754422 378899998888876

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.88  E-value=0.073  Score=42.21  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHhcC-----CCe--eeecCC-hhhHHHHHHHHC--
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK--VDLLKNKFG-----FDE--AFNYKE-EADLNAALKRYF--  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~--~~~~~~~~g-----~~~--v~~~~~-~~~~~~~~~~~~--  146 (268)
                      .++.+||+|+++++|.+++.-+...|++|+++.++.+.  .+.+.+...     ...  ..|... .+.....+.+..  
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~~   83 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEE   83 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999888999998888876543  233321222     111  134443 212322232222  


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      -|.+|++++++|.
T Consensus        84 ~g~id~lvnnAg~   96 (251)
T COG1028          84 FGRIDILVNNAGI   96 (251)
T ss_pred             cCCCCEEEECCCC
Confidence            2368999998884

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.84  E-value=0.71  Score=36.74  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..+..+||-+|+ |. |..+..+++ .|.+|++++.+++..+.+++.......+..+.. .+     ....+.||+|+..
T Consensus        40 ~~~~~~vLDiGc-G~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~-----~~~~~~fD~V~s~  110 (251)
T PRK10258         40 QRKFTHVLDAGC-GP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE-SL-----PLATATFDLAWSN  110 (251)
T ss_pred             ccCCCeEEEeeC-CC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cC-----cCCCCcEEEEEEC
Confidence            345678999987 33 555555544 588999999999988888733222222222211 11     0112269999864


Q ss_pred             CC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          157 VG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ..     .  ..+..+.+.|+|+|.++....
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            42     1  467888999999999887644

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.82  E-value=0.48  Score=37.15  Aligned_cols=89  Identities=18%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCC----HHH--------HHHHHHhcCCCeeeecCChhhHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC---YVVGSAGS----KDK--------VDLLKNKFGFDEAFNYKEEADLNAAL  142 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~---~V~~~~~~----~~~--------~~~~~~~~g~~~v~~~~~~~~~~~~~  142 (268)
                      -.+.+++|+|+ |+.|..++..+...|+   ++++++++    .++        .++++ .++... .+   . ++.+.+
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~-~~~~~~-~~---~-~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK-ETNPEK-TG---G-TLKEAL   95 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH-HhccCc-cc---C-CHHHHH
Confidence            45689999998 9999999999988897   48898887    333        22333 332111 11   1 333333


Q ss_pred             HHHCCCCccEEEeCCChh-hHHhHHHhhhcCCEEEEE
Q 024411          143 KRYFPEGIDIYFENVGGK-LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       143 ~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~  178 (268)
                      +     ++|+++++++.. .-...++.+.++..+..+
T Consensus        96 ~-----~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~l  127 (226)
T cd05311          96 K-----GADVFIGVSRPGVVKKEMIKKMAKDPIVFAL  127 (226)
T ss_pred             h-----cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEe
Confidence            2     389999999742 224566667676655543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.82  E-value=0.1  Score=44.07  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             CCCcEEEEecCcchHHHH--HHHHHHHcCCEEEEEeCCH--HH-------------HH-HHHHhcCCC-eee--ecCChh
Q 024411           78 KHGECVFISAASGAVGQL--VGQFAKLLGCYVVGSAGSK--DK-------------VD-LLKNKFGFD-EAF--NYKEEA  136 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~--~i~l~~~~g~~V~~~~~~~--~~-------------~~-~~~~~~g~~-~v~--~~~~~~  136 (268)
                      ..++++||+|+++++|++  .++.+ ..|++|+++....  .+             .. .+. +.|.. ..+  |....+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~-~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAK-AAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHH-hcCCceEEEEcCCCCHH
Confidence            456899999999999999  56666 8999988887322  11             22 233 55543 222  333321


Q ss_pred             h---HHHHHHHHCCCCccEEEeCCCh
Q 024411          137 D---LNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus       137 ~---~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      .   +.+.+.+.. |++|+++++++.
T Consensus       117 ~v~~lie~I~e~~-G~IDiLVnSaA~  141 (398)
T PRK13656        117 IKQKVIELIKQDL-GQVDLVVYSLAS  141 (398)
T ss_pred             HHHHHHHHHHHhc-CCCCEEEECCcc
Confidence            2   333333332 479999998885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.80  E-value=0.059  Score=42.67  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCe-e-eecCCh--hhHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNK---FGFDE-A-FNYKEE--ADLNAALK  143 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~---~g~~~-v-~~~~~~--~~~~~~~~  143 (268)
                      ....+.||++|+=.|  .|.|.++..+++..|.  +|+.....+++.+.+++.   .|... + +...+-  +.+...  
T Consensus        34 ~~l~i~pG~~VlEaG--tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~--  109 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAG--TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE--  109 (247)
T ss_dssp             HHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--
T ss_pred             HHcCCCCCCEEEEec--CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc--
Confidence            346899999998776  4458888888888874  999999999988777643   45532 2 222210  022111  


Q ss_pred             HHCCCCccEE-EeCCCh-hhHHhHHHhh-hcCCEEEEEcc
Q 024411          144 RYFPEGIDIY-FENVGG-KLLDAVLPNM-KIRGRIAACGM  180 (268)
Q Consensus       144 ~~~~~~~d~v-~d~~g~-~~~~~~~~~l-~~~G~~v~~g~  180 (268)
                        ..+.+|.| +|--.. ..+..+.+.| +++|+++.+..
T Consensus       110 --~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  110 --LESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             ---TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             --ccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence              12368866 577776 8999999999 89999999855

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.76  E-value=0.12  Score=42.92  Aligned_cols=93  Identities=12%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHH-HHcCC-EEEEEeCCHHHHHHHHHhc----CCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 KHGECVFISAASGAVGQLVGQFA-KLLGC-YVVGSAGSKDKVDLLKNKF----GFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~-~~~g~-~V~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ...++++|+|+ |..|...+..+ ...++ +|.+..+++++.+.+.+++    +.. +..+.   ++.+.+.     ..|
T Consensus       125 ~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~~-----~aD  194 (325)
T PRK08618        125 EDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN---SADEAIE-----EAD  194 (325)
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC---CHHHHHh-----cCC
Confidence            35678999997 99998776554 45576 8888899988776654333    332 22222   3333332     489


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEccc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      +|+.|++....... +.++++-++..+|..
T Consensus       195 iVi~aT~s~~p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        195 IIVTVTNAKTPVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             EEEEccCCCCcchH-HhcCCCcEEEecCCC
Confidence            99999987433333 888999999899874

>PLN03139 formate dehydrogenase; Provisional

Probab=95.76  E-value=0.26  Score=41.86  Aligned_cols=89  Identities=26%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .|++|.|+|. |.+|..+++.++.+|.+|++.+++....+... +.|...+     . ++.+.+.+     .|+|+-++.
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~~-----~-~l~ell~~-----sDvV~l~lP  264 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKFE-----E-DLDAMLPK-----CDVVVINTP  264 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCceec-----C-CHHHHHhh-----CCEEEEeCC
Confidence            5789999996 99999999999999999999887643333333 4443211     1 34433432     788887776


Q ss_pred             h-hh----H-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL----L-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~----~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.    + ...+..++++..+|.++-
T Consensus       265 lt~~T~~li~~~~l~~mk~ga~lIN~aR  292 (386)
T PLN03139        265 LTEKTRGMFNKERIAKMKKGVLIVNNAR  292 (386)
T ss_pred             CCHHHHHHhCHHHHhhCCCCeEEEECCC
Confidence            3 21    2 356788889888888865

>PLN02214 cinnamoyl-CoA reductase

Probab=95.74  E-value=0.079  Score=44.37  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      ++.+|||+||+|.+|..++..+...|.+|+++.++.++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            46789999999999999999999999999999887653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.74  E-value=0.13  Score=44.65  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV-DLLKNKFGF  126 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~-~~~~~~~g~  126 (268)
                      +|.|+||.|.+|.+++..++..|.+|++.++++++. +.+. ++|.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~-~~gv   46 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK-ELGV   46 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH-HcCC
Confidence            588999779999999999999999999999887764 3344 5554

>PLN00203 glutamyl-tRNA reductase

Probab=95.74  E-value=0.18  Score=44.66  Aligned_cols=71  Identities=23%  Similarity=0.325  Sum_probs=51.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.+|+|+|+ |.+|.+++..+...|+ +|+++.++.++.+.+.++++...  +...+   +....+     ..+|+||.|
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~---dl~~al-----~~aDVVIsA  336 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLD---EMLACA-----AEADVVFTS  336 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHh---hHHHHH-----hcCCEEEEc
Confidence            678999998 9999999999999997 89999999988777764564211  11111   222222     248999999


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      ++.
T Consensus       337 T~s  339 (519)
T PLN00203        337 TSS  339 (519)
T ss_pred             cCC
Confidence            875

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.73  E-value=0.029  Score=44.73  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=49.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC-ChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK-EEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|||+||||- |..++..+...|.+|+++.+++...+.+. ..|...+.... +.+++...+++   .++|+|+|++..
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~-~~g~~~v~~g~l~~~~l~~~l~~---~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP-IHQALTVHTGALDPQELREFLKR---HSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc-ccCCceEEECCCCHHHHHHHHHh---cCCCEEEEcCCH
Confidence            6999999776 99888888888999999998887666665 55544443222 11133333322   379999998865

This enzyme was found to be a monomer by gel filtration.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.73  E-value=0.13  Score=41.87  Aligned_cols=92  Identities=17%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      +||.....+..|....---.|++|.|+|.++.+|.-++.++...|+.|++.. ++.+                      +
T Consensus       138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~----------------------l  195 (296)
T PRK14188        138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD----------------------L  195 (296)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC----------------------H
Confidence            4666555555554433235799999999889999999999999999999884 3321                      1


Q ss_pred             HHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          139 NAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+..+     ..|+++-++|. ..+...+  ++++..++.+|.
T Consensus       196 ~e~~~-----~ADIVIsavg~~~~v~~~~--lk~GavVIDvGi  231 (296)
T PRK14188        196 PAVCR-----RADILVAAVGRPEMVKGDW--IKPGATVIDVGI  231 (296)
T ss_pred             HHHHh-----cCCEEEEecCChhhcchhe--ecCCCEEEEcCC
Confidence            11111     27888888887 4344333  888888888876

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.71  E-value=0.24  Score=41.32  Aligned_cols=87  Identities=23%  Similarity=0.272  Sum_probs=61.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .|++|.|+|. |.+|..+++.++.+|.+|++.+++.... ... ..+..    +.   ++.+.+.+     .|+|+-++.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~----~~---~l~ell~~-----aDiV~l~lP  213 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPE-AEK-ELGAE----YR---PLEELLRE-----SDFVSLHVP  213 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChh-hHH-HcCCE----ec---CHHHHHhh-----CCEEEEeCC
Confidence            5789999997 9999999999999999999998765432 222 33431    11   33434433     799988876


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...+..++++..++.++.
T Consensus       214 ~t~~T~~~i~~~~~~~mk~ga~lIN~aR  241 (333)
T PRK13243        214 LTKETYHMINEERLKLMKPTAILVNTAR  241 (333)
T ss_pred             CChHHhhccCHHHHhcCCCCeEEEECcC
Confidence            3 2    12 356788889988888865

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=95.70  E-value=0.22  Score=42.79  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCH--HHH-HHHHHhcCCCeeeecCChhhHHH---------------
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSK--DKV-DLLKNKFGFDEAFNYKEEADLNA---------------  140 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~--~~~-~~~~~~~g~~~v~~~~~~~~~~~---------------  140 (268)
                      .+|.|+|+||++|..++++.+..  .++|++.....  +.+ +.++ ++.+..+.-.+.  ....               
T Consensus        58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~-~f~p~~v~v~d~--~~~~~l~~~l~~~~~~~~v  134 (454)
T PLN02696         58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVR-KFKPKLVAVRNE--SLVDELKEALADLDDKPEI  134 (454)
T ss_pred             cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHH-HhCCCEEEEcCH--HHHHHHHHhhcCCCCCcEE
Confidence            68999999999999999998875  45777665332  222 2233 677665544332  2122               


Q ss_pred             -----HHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          141 -----ALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       141 -----~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                           .+.+.... .+|+|++...+ ..+.-.+..++.|-++.+..
T Consensus       135 l~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALAN  180 (454)
T PLN02696        135 IPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN  180 (454)
T ss_pred             EECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEec
Confidence                 22222222 58999998887 67777788888877766553

>TIGR00417 speE spermidine synthase

Probab=95.69  E-value=0.16  Score=40.98  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------CeeeecCChhhHHHHHHHHCCCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF------DEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +.++||++|+ | .|..+..++++... ++.+++.+++-.+.+++.+..      +.-++.... +....+++ ..+.+|
T Consensus        72 ~p~~VL~iG~-G-~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-D~~~~l~~-~~~~yD  147 (270)
T TIGR00417        72 NPKHVLVIGG-G-DGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-DGFKFLAD-TENTFD  147 (270)
T ss_pred             CCCEEEEEcC-C-chHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-chHHHHHh-CCCCcc
Confidence            4459999996 3 35566677776644 899999888877777743311      011111111 33334433 234799


Q ss_pred             EEE-eCC---C-------hhhHHhHHHhhhcCCEEEEE
Q 024411          152 IYF-ENV---G-------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~-d~~---g-------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+ |..   +       .+.++.+.+.|+++|.++..
T Consensus       148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            886 433   1       13457888999999998876

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.67  E-value=0.15  Score=37.48  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             hccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           59 ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        59 ~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      .+|+.....+..|....---.|++++|.|.+..+|.-+..++...|+.|+.......                     ++
T Consensus        15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~---------------------~l   73 (160)
T PF02882_consen   15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK---------------------NL   73 (160)
T ss_dssp             S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS---------------------SH
T ss_pred             CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC---------------------cc
Confidence            344444455555544433467899999999889999999999999999998764321                     22


Q ss_pred             HHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          139 NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.++     ..|+++-++|.+.+- --+.++++..++.+|.
T Consensus        74 ~~~~~-----~ADIVVsa~G~~~~i-~~~~ik~gavVIDvG~  109 (160)
T PF02882_consen   74 QEITR-----RADIVVSAVGKPNLI-KADWIKPGAVVIDVGI  109 (160)
T ss_dssp             HHHHT-----TSSEEEE-SSSTT-B--GGGS-TTEEEEE--C
T ss_pred             cceee-----eccEEeeeecccccc-ccccccCCcEEEecCC
Confidence            22222     378899888874431 2346788888888776

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.67  E-value=0.062  Score=41.88  Aligned_cols=98  Identities=13%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--------------eecCChhhHHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--------------FNYKEEADLNAA  141 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--------------~~~~~~~~~~~~  141 (268)
                      .+.++.+||+.|+  |.|.-++-+|. +|++|++++.++...+.+.++.+....              +..... ++.+.
T Consensus        34 ~~~~~~rvL~~gC--G~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~-D~~~l  109 (218)
T PRK13255         34 ALPAGSRVLVPLC--GKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCG-DFFAL  109 (218)
T ss_pred             CCCCCCeEEEeCC--CChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEEC-cccCC
Confidence            3456789999996  56888888875 799999999999877765424433210              110000 11100


Q ss_pred             HHHHCCCCccEEEeCCC---------hhhHHhHHHhhhcCCEEEEE
Q 024411          142 LKRYFPEGIDIYFENVG---------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       142 ~~~~~~~~~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~  178 (268)
                       .....+.||.++|...         ...+..+.++|+|+|++..+
T Consensus       110 -~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        110 -TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             -CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence             0001126899998653         13477888999999975554

>PLN02427 UDP-apiose/xylose synthase

Probab=95.66  E-value=0.074  Score=45.32  Aligned_cols=75  Identities=15%  Similarity=0.070  Sum_probs=48.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------Ceee--ecCChhhHHHHHHHHCCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGF------DEAF--NYKEEADLNAALKRYFPE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~------~~v~--~~~~~~~~~~~~~~~~~~  148 (268)
                      -+..+|||+||+|-+|..+++.+... |.+|++++++.++...+. ..+.      ...+  |..+.    ..+.+... 
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~-~~~~~~~~~~~~~~~~Dl~d~----~~l~~~~~-   85 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL-EPDTVPWSGRIQFHRINIKHD----SRLEGLIK-   85 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh-ccccccCCCCeEEEEcCCCCh----HHHHHHhh-
Confidence            34457999999999999999988877 589999997766554443 2221      1122  22222    12322222 


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|+||.+++
T Consensus        86 ~~d~ViHlAa   95 (386)
T PLN02427         86 MADLTINLAA   95 (386)
T ss_pred             cCCEEEEccc
Confidence            4899999886

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.66  E-value=0.13  Score=41.82  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             hccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           59 ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        59 ~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      .+||........|....---.|++|.++|.++.+|.-++.++...|+.|++..+....                     .
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~---------------------l  196 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTD---------------------A  196 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCC---------------------H
Confidence            3466655555555444333579999999987799999999999999999998643221                     1


Q ss_pred             HHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          139 NAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+..+     ..|+++-++|. ..+...+  ++++..++.+|.
T Consensus       197 ~e~~~-----~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgi  232 (301)
T PRK14194        197 KALCR-----QADIVVAAVGRPRLIDADW--LKPGAVVIDVGI  232 (301)
T ss_pred             HHHHh-----cCCEEEEecCChhcccHhh--ccCCcEEEEecc
Confidence            11222     27888888887 4444433  888888888874

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.64  E-value=0.19  Score=40.95  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH---HHHHHHHHhcCCC--eeeecCChhhHHHHHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK---DKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      .+++++|+|+ ||.+.+++..+...|+ +++++.|++   ++.+.+.+.++..  ..+..... +-...+.+. ...+|+
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~aDi  199 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDL-ADQQAFAEA-LASADI  199 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEech-hhhhhhhhh-cccCCE
Confidence            5678999998 8889887777778887 899999984   3544444344321  11111110 101112221 125899


Q ss_pred             EEeCCC
Q 024411          153 YFENVG  158 (268)
Q Consensus       153 v~d~~g  158 (268)
                      +++|+.
T Consensus       200 vINaTp  205 (288)
T PRK12749        200 LTNGTK  205 (288)
T ss_pred             EEECCC
Confidence            999875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.63  E-value=0.033  Score=46.06  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +++|+|++|.+|..+++.+...|.+|+++.+++++..... ..+... ..|..+.+.+.+.+    . ++|+++++++
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~----~-~~d~vi~~a~   73 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE-GLDVEIVEGDLRDPASLRKAV----A-GCRALFHVAA   73 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccc-cCCceEEEeeCCCHHHHHHHH----h-CCCEEEEece
Confidence            5899999999999999999999999999998766543332 233322 12333321222222    1 4799998875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.63  E-value=0.05  Score=46.14  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ..+.+|||+||+|-+|..++..+...|.+|+++++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            4668999999999999999999999999999998753

>PLN02650 dihydroflavonol-4-reductase

Probab=95.61  E-value=0.087  Score=44.23  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL  119 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~  119 (268)
                      ..++|||+||+|.+|..++..+...|.+|++++++.++.+.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~   44 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKK   44 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHH
Confidence            35689999999999999999999999999998877655443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.58  E-value=0.41  Score=38.48  Aligned_cols=33  Identities=12%  Similarity=0.103  Sum_probs=27.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAG  112 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~  112 (268)
                      .+.+|+|.|+ |++|..++..+...|. ++++++.
T Consensus        29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~   62 (268)
T PRK15116         29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDM   62 (268)
T ss_pred             cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeC
Confidence            3467999997 9999999999999996 7777773

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.58  E-value=0.11  Score=41.45  Aligned_cols=93  Identities=19%  Similarity=0.177  Sum_probs=63.9

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      ....++.+||=.|+  |.|..+..+++.. +.+|++++.++...+.++ +.+.. .+..    +.. .+.  ..+.||+|
T Consensus        25 l~~~~~~~vLDlGc--G~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-~~~~~-~~~~----d~~-~~~--~~~~fD~v   93 (255)
T PRK14103         25 VGAERARRVVDLGC--GPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-ERGVD-ARTG----DVR-DWK--PKPDTDVV   93 (255)
T ss_pred             CCCCCCCEEEEEcC--CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-hcCCc-EEEc----Chh-hCC--CCCCceEE
Confidence            35677889999986  3477777888775 679999999999888887 54433 2221    221 111  12379999


Q ss_pred             EeCCC-----h--hhHHhHHHhhhcCCEEEEE
Q 024411          154 FENVG-----G--KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       154 ~d~~g-----~--~~~~~~~~~l~~~G~~v~~  178 (268)
                      +-...     .  ..+..+.+.|+|+|+++..
T Consensus        94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            86442     2  4577889999999998765

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.57  E-value=0.21  Score=40.16  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcC------CCe--eeecCChhhHHHHHHH
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKFG------FDE--AFNYKEEADLNAALKR  144 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~g------~~~--v~~~~~~~~~~~~~~~  144 (268)
                      ..+.++++||-.|+  |.|..+..+++..+  .+|++++.+++..+.+++...      ...  .+..+.. ++      
T Consensus        69 ~~~~~~~~VLDlGc--GtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~l------  139 (261)
T PLN02233         69 SGAKMGDRVLDLCC--GSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DL------  139 (261)
T ss_pred             hCCCCCCEEEEECC--cCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cC------
Confidence            46778999999986  34667777787765  499999999998888763322      111  1211111 11      


Q ss_pred             HCCC-CccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 YFPE-GIDIYFENVG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~~~-~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ..++ .||.|+-..+     .  ..+.++.+.|+|+|+++....
T Consensus       140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            0123 6998875332     2  467899999999999988755

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.56  E-value=0.11  Score=40.87  Aligned_cols=76  Identities=14%  Similarity=0.140  Sum_probs=46.4

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      ++|+|++|++|..+++.+...|++|++++++. ++.+.+.++   .+.. .  ..|..+.++....+.+..  .+..|.+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            58999999999999999999999999887653 333322212   2321 1  234443323333333221  2367888


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.+.|
T Consensus        81 i~~ag   85 (239)
T TIGR01831        81 VLNAG   85 (239)
T ss_pred             EECCC
Confidence            88776

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.56  E-value=0.23  Score=35.68  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=63.0

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      .|+........+....---.|++++|+|.+..+|.-++.++...|++|+...+...                     ++.
T Consensus         8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~---------------------~l~   66 (140)
T cd05212           8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI---------------------QLQ   66 (140)
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc---------------------CHH
Confidence            34443444444443322357899999999999999999999999999998874321                     122


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++     .+|+++-++|...+ ---+.+++|-.++.+|.
T Consensus        67 ~~v~-----~ADIVvsAtg~~~~-i~~~~ikpGa~Vidvg~  101 (140)
T cd05212          67 SKVH-----DADVVVVGSPKPEK-VPTEWIKPGATVINCSP  101 (140)
T ss_pred             HHHh-----hCCEEEEecCCCCc-cCHHHcCCCCEEEEcCC
Confidence            2222     27888888887432 22456888888887665

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.56  E-value=0.17  Score=40.85  Aligned_cols=94  Identities=16%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      .||.....+..|....---.|++++|.|.+.-+|.-+..++...|+.|++..+.-.                     ++.
T Consensus       139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~---------------------~l~  197 (285)
T PRK10792        139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK---------------------NLR  197 (285)
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC---------------------CHH
Confidence            46655556656644322346899999999777999999999999999988874311                     233


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +..+     .+|+++.++|.+.+-. -+.++++..++.+|.
T Consensus       198 ~~~~-----~ADIvi~avG~p~~v~-~~~vk~gavVIDvGi  232 (285)
T PRK10792        198 HHVR-----NADLLVVAVGKPGFIP-GEWIKPGAIVIDVGI  232 (285)
T ss_pred             HHHh-----hCCEEEEcCCCccccc-HHHcCCCcEEEEccc
Confidence            3333     2899999999754322 277888888888875

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=95.55  E-value=0.054  Score=44.13  Aligned_cols=59  Identities=19%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+|++|.+|..+...++..|.+|+.+.++         .      +|..+.+.+.+.+.+.   .+|+|++|++
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------~------~dl~d~~~~~~~~~~~---~pd~Vin~aa   60 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS---------D------LDLTDPEAVAKLLEAF---KPDVVINCAA   60 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------C------S-TTSHHHHHHHHHHH-----SEEEE---
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------h------cCCCCHHHHHHHHHHh---CCCeEeccce
Confidence            68999999999999999999999999999755         1      1222211333333332   4789999886

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.55  E-value=0.31  Score=36.06  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|-++|. |.+|..++.-+...|.+|++.++++++.+.+. +.|+. ..  .   +..+.+.+     .|+|+-|+.+ .
T Consensus         3 ~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~-~~--~---s~~e~~~~-----~dvvi~~v~~~~   69 (163)
T PF03446_consen    3 KIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAE-VA--D---SPAEAAEQ-----ADVVILCVPDDD   69 (163)
T ss_dssp             EEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEE-EE--S---SHHHHHHH-----BSEEEE-SSSHH
T ss_pred             EEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhh-hh--h---hhhhHhhc-----ccceEeecccch
Confidence            6788896 99999999999999999999999999998888 55632 21  1   33334433     6899988876 4


Q ss_pred             hHHh------HHHhhhcCCEEEEEcc
Q 024411          161 LLDA------VLPNMKIRGRIAACGM  180 (268)
Q Consensus       161 ~~~~------~~~~l~~~G~~v~~g~  180 (268)
                      ..+.      ....+.++..++.++.
T Consensus        70 ~v~~v~~~~~i~~~l~~g~iiid~sT   95 (163)
T PF03446_consen   70 AVEAVLFGENILAGLRPGKIIIDMST   95 (163)
T ss_dssp             HHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred             hhhhhhhhhHHhhccccceEEEecCC
Confidence            4443      3444556666666655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.54  E-value=0.014  Score=47.52  Aligned_cols=146  Identities=22%  Similarity=0.245  Sum_probs=79.1

Q ss_pred             CCCCCCeEEeccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcC-CCCCcEEEEecCcchHHHHHH
Q 024411           19 EFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCS-PKHGECVFISAASGAVGQLVG   97 (268)
Q Consensus        19 ~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i   97 (268)
                      .+++|++.+...+|.++-.-+.+.++.++| +  +.|-..    ...|-..||..+.. ..++++||=.|.  |.|.+++
T Consensus       107 P~~vg~~~~I~P~w~~~~~~~~~~~I~idP-g--~AFGTG----~H~TT~lcl~~l~~~~~~g~~vLDvG~--GSGILai  177 (295)
T PF06325_consen  107 PIRVGDRLVIVPSWEEYPEPPDEIVIEIDP-G--MAFGTG----HHPTTRLCLELLEKYVKPGKRVLDVGC--GSGILAI  177 (295)
T ss_dssp             -EEECTTEEEEETT----SSTTSEEEEEST-T--SSS-SS----HCHHHHHHHHHHHHHSSTTSEEEEES---TTSHHHH
T ss_pred             cEEECCcEEEECCCcccCCCCCcEEEEECC-C--CcccCC----CCHHHHHHHHHHHHhccCCCEEEEeCC--cHHHHHH
Confidence            356777777777888873334444677744 3  332111    12232333322222 578899999995  3365555


Q ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCChh----hHHhHHHh
Q 024411           98 QFAKLLGC-YVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVGGK----LLDAVLPN  168 (268)
Q Consensus        98 ~l~~~~g~-~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~----~~~~~~~~  168 (268)
                      ..++ +|+ +|++++..+...+.+++..   +.. .+...... +.       ..+.||+|+-..-..    ......++
T Consensus       178 aA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~-~~-------~~~~~dlvvANI~~~vL~~l~~~~~~~  248 (295)
T PF06325_consen  178 AAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE-DL-------VEGKFDLVVANILADVLLELAPDIASL  248 (295)
T ss_dssp             HHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS-CT-------CCS-EEEEEEES-HHHHHHHHHHCHHH
T ss_pred             HHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec-cc-------ccccCCEEEECCCHHHHHHHHHHHHHh
Confidence            5555 587 8999998887666655321   222 11111111 11       114799998665542    34556678


Q ss_pred             hhcCCEEEEEcccc
Q 024411          169 MKIRGRIAACGMIS  182 (268)
Q Consensus       169 l~~~G~~v~~g~~~  182 (268)
                      ++++|.+++.|...
T Consensus       249 l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  249 LKPGGYLILSGILE  262 (295)
T ss_dssp             EEEEEEEEEEEEEG
T ss_pred             hCCCCEEEEccccH
Confidence            88999999998754

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=95.52  E-value=0.56  Score=36.65  Aligned_cols=94  Identities=21%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCC-eeeecCChhhHHHHHHHHCCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNK---FGFD-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ..+.++++||-.|+ |. |..++.+++. ++ +|++++.++...+.+++.   .+.. .+++.    ++...+   ..+.
T Consensus        32 ~~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~----d~~~~~---~~~~  101 (223)
T PRK14967         32 EGLGPGRRVLDLCT-GS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG----DWARAV---EFRP  101 (223)
T ss_pred             cccCCCCeEEEecC-CH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC----chhhhc---cCCC
Confidence            35678899999996 54 8888888875 55 999999998877766522   2332 12221    332221   1237


Q ss_pred             ccEEEeCCCh----------------------------hhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYFENVGG----------------------------KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~d~~g~----------------------------~~~~~~~~~l~~~G~~v~~  178 (268)
                      ||+|+....-                            ..+..+.+.|+++|+++.+
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999864210                            1245677899999998875

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.11  Score=42.52  Aligned_cols=93  Identities=19%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ..++|.||+|-.|-+.+..++..|.+-....+|..+++.+..++|... ++..-.+ ...+.+.    .++++|++|+|.
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p-~~~~~~~----~~~~VVlncvGP   81 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVP-AALEAMA----SRTQVVLNCVGP   81 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCH-HHHHHHH----hcceEEEecccc
Confidence            357899999999999999999999988888999999998887888863 3333222 3333332    258999999997


Q ss_pred             -hh--HHhHHHhhhcCCEEEEE
Q 024411          160 -KL--LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       160 -~~--~~~~~~~l~~~G~~v~~  178 (268)
                       ..  ......|+..+-.+..+
T Consensus        82 yt~~g~plv~aC~~~GTdY~Di  103 (382)
T COG3268          82 YTRYGEPLVAACAAAGTDYADI  103 (382)
T ss_pred             ccccccHHHHHHHHhCCCeeec
Confidence             32  23444455555566655

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.50  E-value=0.059  Score=44.25  Aligned_cols=73  Identities=8%  Similarity=0.051  Sum_probs=43.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCH--HHHHHHHHhcCC---Ceee--ecCChhhHHHHHHHHCCC-Ccc
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSK--DKVDLLKNKFGF---DEAF--NYKEEADLNAALKRYFPE-GID  151 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~--~~~~~~~~~~g~---~~v~--~~~~~~~~~~~~~~~~~~-~~d  151 (268)
                      +|+|+||+|.+|..+++.+...|  .+|+++.+..  .+.+.+. .+..   ..++  |..+.+.+.+.+    .+ .+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~~~d   75 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLA-DLEDNPRYRFVKGDIGDRELVSRLF----TEHQPD   75 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhh-hhccCCCcEEEEcCCcCHHHHHHHH----hhcCCC
Confidence            48999999999999999887766  6888876421  2222222 2211   1222  333321232222    23 589


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +|+++++.
T Consensus        76 ~vi~~a~~   83 (317)
T TIGR01181        76 AVVHFAAE   83 (317)
T ss_pred             EEEEcccc
Confidence            99999874

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.49  E-value=0.28  Score=39.22  Aligned_cols=94  Identities=13%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCC-CCccE
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFP-EGIDI  152 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~-~~~d~  152 (268)
                      ..+.++++||=+|+  |.|..+..+++.. +.+|++++.++...+.+++.+.....+..    +..    +... +.+|+
T Consensus        27 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~----d~~----~~~~~~~fD~   96 (258)
T PRK01683         27 VPLENPRYVVDLGC--GPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA----DIA----SWQPPQALDL   96 (258)
T ss_pred             CCCcCCCEEEEEcc--cCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC----chh----ccCCCCCccE
Confidence            35678899999986  4577788888776 56999999999988888734322222222    211    1112 37998


Q ss_pred             EEeCCC-----h--hhHHhHHHhhhcCCEEEEE
Q 024411          153 YFENVG-----G--KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       153 v~d~~g-----~--~~~~~~~~~l~~~G~~v~~  178 (268)
                      ++....     .  ..+..+.+.|+|+|+++..
T Consensus        97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            875433     2  4578889999999998775

>PRK07574 formate dehydrogenase; Provisional

Probab=95.48  E-value=0.13  Score=43.61  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++.+|.+|++.+++....+... .++...   +.   ++.+.++     ..|+|+-+..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-~~g~~~---~~---~l~ell~-----~aDvV~l~lP  257 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-ELGLTY---HV---SFDSLVS-----VCDVVTIHCP  257 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-hcCcee---cC---CHHHHhh-----cCCEEEEcCC
Confidence            4678999997 99999999999999999999997753333333 444321   11   3333332     3788887776


Q ss_pred             h-hh----H-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL----L-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~----~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.    + ...+..|+++..+|.++.
T Consensus       258 lt~~T~~li~~~~l~~mk~ga~lIN~aR  285 (385)
T PRK07574        258 LHPETEHLFDADVLSRMKRGSYLVNTAR  285 (385)
T ss_pred             CCHHHHHHhCHHHHhcCCCCcEEEECCC
Confidence            3 21    1 356677888887777754

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.48  E-value=0.052  Score=44.64  Aligned_cols=73  Identities=12%  Similarity=0.105  Sum_probs=44.2

Q ss_pred             EEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeee-ecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAF-NYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      |||+||+|.+|..+++.+...|. .|+++.+...... .. .+...... +.+.. +..+.+.+....++|+|+.+++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~-~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHK-FL-NLADLVIADYIDKE-DFLDRLEKGAFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchh-hh-hhhheeeeccCcch-hHHHHHHhhccCCCCEEEECcc
Confidence            68999999999999999999998 7888765432221 11 22211111 22222 3333333211136999999886

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=95.46  E-value=0.32  Score=40.93  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCH--HHH-HHHHHhcCCCeeeecCChhhHHHHHHH-----------
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSK--DKV-DLLKNKFGFDEAFNYKEEADLNAALKR-----------  144 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~--~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~-----------  144 (268)
                      ++|.|+|+||++|..++.+++.+.  ++|.+++.+.  +.+ +.++ ++.+..+.-.++  .....++.           
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~-~f~p~~v~i~d~--~~~~~l~~~l~~~~~~~~v   78 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQIL-EFRPKFVAIDDE--ASLKDLKTMLQQQGSRTEV   78 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHH-HcCCCEEEEcCH--HHHHHHHHHhhcCCCCcEE
Confidence            478999999999999999988653  6888776433  222 3333 677765543332  22222222           


Q ss_pred             ---------HCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          145 ---------YFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       145 ---------~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                               .... .+|+++.+.-+ ..+.-.+..++.+-++.+.
T Consensus        79 ~~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA  123 (389)
T TIGR00243        79 LVGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA  123 (389)
T ss_pred             EECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence                     1112 58999987766 7777888888777665544

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.45  E-value=0.11  Score=36.33  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=51.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHH-HHHHHHHhcC----CC-eeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKD-KVDLLKNKFG----FD-EAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~-~~~~~~~~~g----~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +|.|.||+|-+|..+++++..+- +++..+..+.. .-..+.+.++    .. ..+.....    ..+     ..+|++|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~Dvvf   71 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADP----EEL-----SDVDVVF   71 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSG----HHH-----TTESEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecch----hHh-----hcCCEEE
Confidence            58899999999999999998754 46555543433 2222221222    11 11211111    111     3599999


Q ss_pred             eCCChhhHHhHHHh-hhcCCEEEEEcc
Q 024411          155 ENVGGKLLDAVLPN-MKIRGRIAACGM  180 (268)
Q Consensus       155 d~~g~~~~~~~~~~-l~~~G~~v~~g~  180 (268)
                      .|++.......... ++.+-+++..+.
T Consensus        72 ~a~~~~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   72 LALPHGASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             E-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred             ecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence            99998655555544 455666766644

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.43  E-value=0.11  Score=43.60  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVD  118 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~  118 (268)
                      +|||+||+|-+|..+++.+... |.+|++++++..+..
T Consensus         3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~   40 (347)
T PRK11908          3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG   40 (347)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH
Confidence            6999999999999999888765 689999998765443

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.43  E-value=0.087  Score=43.97  Aligned_cols=38  Identities=11%  Similarity=0.124  Sum_probs=32.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      .+.+|||+||+|.+|..++..+...|++|++++++...
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~   45 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN   45 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            36789999999999999999999999999888766543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.41  E-value=0.22  Score=39.04  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK-NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      .++|.|+ |-+|..+++.+...|.+|+++++++++..... ++++. +++..+.  .-.+.+++..-..+|.++-++|..
T Consensus         2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~--t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDT-HVVIGDA--TDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcce-EEEEecC--CCHHHHHhcCCCcCCEEEEeeCCC
Confidence            5788998 99999999999999999999999998877743 12433 4444443  223455555334899999999974


Q ss_pred             hHHhH
Q 024411          161 LLDAV  165 (268)
Q Consensus       161 ~~~~~  165 (268)
                      .....
T Consensus        78 ~~N~i   82 (225)
T COG0569          78 EVNSV   82 (225)
T ss_pred             HHHHH
Confidence            44333

>PLN02240 UDP-glucose 4-epimerase

Probab=95.40  E-value=0.11  Score=43.52  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      +++|+|+||+|.+|..+++.+...|.+|+++++.
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999998899999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		1e-126
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		1e-115
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		2e-58
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		8e-53
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		3e-50
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		4e-50
2w4q_A	357	Crystal Structure Of Human Zinc-Binding Alcohol Deh		2e-36
2zb4_A	357	Crystal Structure Of Human 15-Ketoprostaglandin Del		2e-36
2zb3_A	353	Crystal Structure Of Mouse 15-Ketoprostaglandin Del		2e-36
1vj1_A	363	Crystal Structure Of Putative Nadph-Dependent Oxido		1e-33
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-21
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-21
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		2e-21
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		4e-10
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		8e-09
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		4e-08
1o89_A	345	Crystal Structure Of E. Coli K-12 Yhdh Length = 345		7e-07
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		4e-06
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		5e-06
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		9e-06
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		4e-05
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		5e-05
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		7e-05
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		2e-04
1pqw_A	198	Putative Enoyl Reductase Domain Of Polyketide Synth		2e-04
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		6e-04
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		6e-04
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		9e-04

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score =  446 bits (1147), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/267 (79%), Positives = 241/267 (90%), Gaps = 1/267 (0%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
            PI+GYGVAKVL+S +P+F KGDLVWGMTGWEEYS+IT    LFKI   DVPLSYYTGIL
Sbjct: 75  SPITGYGVAKVLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGIL 134
Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           GMPGMTAY GF+EVCSPK GE VF+SAASGAVGQLVGQFAK+LGCYVVGSAGSK+KVDLL
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
           K+KFGFDEAFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAVL NMK+ GRIA CGM
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254
Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
           ISQYNL++ EGVHNL  L++KR+RMEGF+V D+YHLYPK+LEM+IP IK GK+VYVED+A
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314
Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
            GLESAP AL+GLFSG+N+GKQVV V+
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVS 341

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/268 (72%), Positives = 229/268 (85%), Gaps = 2/268 (0%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
           QPI GYGV+++++S +P++ KGDL+WG+  WEEYS+IT   H  FKIQHTDVPLSYYTG+
Sbjct: 76  QPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL 135
Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDL
Sbjct: 136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195
Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK KFGFD+AFNYKEE+DL AALKR FP GIDIYFENVGGK+LDAVL NM + GRIA CG
Sbjct: 196 LKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCG 255
Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           MISQYNL+  EGVHNL  ++ KR R++GF+V D Y  Y KFLE ++PHI+EGK+ YVED+
Sbjct: 256 MISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315
Query: 240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
           A+GLE AP AL+GLF G+NVGKQVV VA
Sbjct: 316 ADGLEKAPEALVGLFHGKNVGKQVVVVA 343

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/260 (46%), Positives = 160/260 (61%), Gaps = 2/260 (0%)
Query: 8   GVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTA 67
           GV KVL S++P F  GD V G  G ++Y +      +K+  +  PL  Y   LGM GMTA
Sbjct: 78  GVGKVLVSKHPGFQAGDYVNGALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTA 137
Query: 68  YVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD 127
           Y    +V  PK+GE V IS A+GAVG + GQ A+L GC VVG AG  +K   L  + GFD
Sbjct: 138 YFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD 197
Query: 128 EAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLD 187
            A +YK E DL A LKR  P+GID++F+NVGG++LD VL  +  + RI  CG ISQYN  
Sbjct: 198 GAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNK 256
Query: 188 KP-EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESA 246
           +   G  N + L+  R RMEG +V+D+   +P+ L+ +   + EGKL   ED+ EGLE+ 
Sbjct: 257 EAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETF 316
Query: 247 PAALIGLFSGQNVGKQVVAV 266
           P  L+ LFSG+N GK V+ V
Sbjct: 317 PETLLKLFSGENFGKLVLKV 336

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score =  203 bits (516), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 119/265 (44%), Positives = 162/265 (61%), Gaps = 6/265 (2%)
Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VA+V++S+N  F  G +V   +GW  + +     L K+       +PLS   G +GM
Sbjct: 69  GQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGM 128
Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  EVC  K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +K+  LK 
Sbjct: 129 PGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK- 187
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           + GFD AFNYK    L  ALK+  P+G D YF+NVGG+ L+ VL  MK  G+IA CG IS
Sbjct: 188 QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAIS 247
Query: 183 QYN-LDKPEGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
            YN +D+     +   ++ K+LR+EGFIV      +  K L  ++  + EGK+ Y E + 
Sbjct: 248 VYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVT 307
Query: 241 EGLESAPAALIGLFSGQNVGKQVVA 265
           +G E+ PAA I + +G N+GK VV 
Sbjct: 308 KGFENMPAAFIEMLNGANLGKAVVT 332

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 153/264 (57%), Gaps = 6/264 (2%)
Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VAKV++S+N    KG +V    GW  +S+     L K+       +PLS   G +GM
Sbjct: 64  GQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGM 123
Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  E+C  K GE V ++AA+GAVG +VGQ AKL GC VVG+ GS +KV  L+ 
Sbjct: 124 PGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ- 182
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD  FNYK    L   LK+  P+G D YF+NVGG+  + V+  MK  GRIA CG IS
Sbjct: 183 KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 242
Query: 183 QYNLDKPEGVHNLMYLV-SKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
            YN   P        +V  + LRME F+V         K L+ ++  + EGK+ Y E + 
Sbjct: 243 TYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYII 302
Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
           EG E+ PAA +G+  G N+GK +V
Sbjct: 303 EGFENMPAAFMGMLKGDNLGKTIV 326

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 153/264 (57%), Gaps = 6/264 (2%)
Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
           G  VAKV++S+N    KG +V    GW  +S+     L K+       +PLS   G +GM
Sbjct: 85  GQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGM 144
Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
           PG+TAY G  E+C  K GE V ++AA+GAVG +VGQ AKL GC VVG+ GS +KV  L+ 
Sbjct: 145 PGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ- 203
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           K GFD  FNYK    L   LK+  P+G D YF+NVGG+  + V+  MK  GRIA CG IS
Sbjct: 204 KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 263
Query: 183 QYNLDKPEGVHNLMYLV-SKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
            YN   P        +V  + LRME F+V         K L+ ++  + EGK+ Y E + 
Sbjct: 264 TYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYII 323
Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
           EG E+ PAA +G+  G N+GK +V
Sbjct: 324 EGFENMPAAFMGMLKGDNLGKTIV 347

>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And 18beta-Glycyrrhetinic Acid Length = 357

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q + G G+  + +S++    KGD V      W+   ++    L K+  Q  D  LSY+ G
Sbjct: 73  QVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 132
Query: 59  ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
            +GMPG+T+ +G  E    +    + + +S A+GA G + GQ    LGC  VVG  G+ +
Sbjct: 133 AIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE 192
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K  LL ++ GFD A NYK++ ++   L+   P G+D+YF+NVGG + D V+  M     I
Sbjct: 193 KCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHI 251
Query: 176 AACGMISQYNLDKP---------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP 226
             CG ISQYN D P         E +        + +  E F+VL++   +   +  +  
Sbjct: 252 ILCGQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQ 306
Query: 227 HIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
             KEGKL   E +  GLE+  AA   + +G N+GKQ+V ++
Sbjct: 307 WFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 347

>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadp And 15-Keto-Pge2 Length = 357

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGM-TGWEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q + G G+  + +S++    KGD V      W+   ++    L K+  Q  D  LSY+ G
Sbjct: 78  QVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 137
Query: 59  ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
            +GMPG+T+ +G  E    +    + + +S A+GA G + GQ    LGC  VVG  G+ +
Sbjct: 138 AIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE 197
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K  LL ++ GFD A NYK++ ++   L+   P G+D+YF+NVGG + D V+  M     I
Sbjct: 198 KCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHI 256
Query: 176 AACGMISQYNLDKP---------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP 226
             CG ISQYN D P         E +        + +  E F+VL++   +   +  +  
Sbjct: 257 ILCGQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQ 311
Query: 227 HIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
             KEGKL   E +  GLE+  AA   + +G N+GKQ+V ++
Sbjct: 312 WFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 352

>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadph Length = 353

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 146/276 (52%), Gaps = 11/276 (3%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q   G G+  V +S++ +  KGD V      W+  +++    L K+  Q  D  LSY+ G
Sbjct: 74  QVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLG 133
Query: 59  ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
            +GMPG+T+ +G  E    S    + + +S A+GA G L GQ   LLGC  VVG  G+++
Sbjct: 134 AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE 193
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + +AV+  M     I
Sbjct: 194 KCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHI 252
Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKR----LRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
             CG ISQY+ D P        + + R    +  E F VL++   +   +  +    KEG
Sbjct: 253 ILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEG 312
Query: 232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
           KL   E MA+GLE+   A   + +G NVGKQ+V ++
Sbjct: 313 KLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS 348

>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent Oxidoreductase From Mus Musculus At 2.10 A Resolution Length = 363

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 11/276 (3%)
Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q   G G+  V +S++ +  KGD V      W+  +++    L K+  Q  D  LSY+ G
Sbjct: 84  QVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLG 143
Query: 59  ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
            +G PG+T+ +G  E    S    +   +S A+GA G L GQ   LLGC  VVG  G+++
Sbjct: 144 AIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE 203
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + + V+        I
Sbjct: 204 KCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNENSHI 262
Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKR----LRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
             CG ISQYN D P        + + R    +  E F VL++   +   +  +    KEG
Sbjct: 263 ILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEG 322
Query: 232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
           KL   E +A+GLE+   A     +G NVGKQ+V ++
Sbjct: 323 KLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCIS 358

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40  APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
           AP  F  ++T VP S  T +         L + G TAY+   E+     G+ V ++AA+G
Sbjct: 95  APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 153
Query: 91  AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
             GQ   Q +K   C+V+G+  S +K   LK+  G D   NYK E  +   LK+ +PEG+
Sbjct: 154 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 211
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
           D+ +E+VGG + D  +  +  +GR+   G IS Y    P G+  +        L+ K   
Sbjct: 212 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 269
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
           ++GF  L+HY   Y   +  ++     G LV   D+ +        GLES   A+  ++ 
Sbjct: 270 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 328
Query: 256 GQNVGKQVV 264
           G+N GK VV
Sbjct: 329 GKNTGKIVV 337

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40  APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
           AP  F  ++T VP S  T +         L + G TAY+   E+     G+ V ++AA+G
Sbjct: 124 APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 182
Query: 91  AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
             GQ   Q +K   C+V+G+  S +K   LK+  G D   NYK E  +   LK+ +PEG+
Sbjct: 183 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 240
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
           D+ +E+VGG + D  +  +  +GR+   G IS Y    P G+  +        L+ K   
Sbjct: 241 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 298
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
           ++GF  L+HY   Y   +  ++     G LV   D+ +        GLES   A+  ++ 
Sbjct: 299 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 357
Query: 256 GQNVGKQVV 264
           G+N GK VV
Sbjct: 358 GKNTGKIVV 366

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40  APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
           AP  F  ++T VP S  T +         L + G TAY+   E+     G+ V ++AA+G
Sbjct: 116 APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 174
Query: 91  AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
             GQ   Q +K   C+V+G+  S +K   LK+  G D   NYK E  +   LK+ +PEG+
Sbjct: 175 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 232
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
           D+ +E+VGG + D  +  +  +GR+   G IS Y    P G+  +        L+ K   
Sbjct: 233 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 290
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
           ++GF  L+HY   Y   +  ++     G LV   D+ +        GLES   A+  ++ 
Sbjct: 291 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 349
Query: 256 GQNVGKQVV 264
           G+N GK VV
Sbjct: 350 GKNTGKIVV 358

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 8   GVAKVLDSENPEFNKGDLVWGMT----GWEEYSLITAPHLFKIQHTDVPLSYYTGI-LGM 62
           GV + +      F KGD V+  +    G+ EY+L     ++K+      L +  G  +G+
Sbjct: 97  GVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK---LDFKQGAAIGI 153
Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL-LK 121
           P  TAY         K GE V +  ASG VG    Q A+  G  ++G+AG+++   + L+
Sbjct: 154 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 213
Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           N  G  E FN++E   ++  +K+Y  E GIDI  E +    L   L  +   GR+   G
Sbjct: 214 N--GAHEVFNHREVNYID-KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG 269

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 4   ISGYGVAKVLDSENP---EFNKGDLVWG----MTGWEEYSLITAPHLFKI-QHTDVPLSY 55
           + G+  A V++   P   +F  G+ V      +  + +  L  A  L K+ +  D+   +
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVH 122
Query: 56  YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
             G++ + GMTA    ++    K G+ V I AA+G +G ++  +A+ LG  V+G+  +++
Sbjct: 123 LAGLM-LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE 181
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K +  + K G     NY  +       +    +G+D+ ++++G   L   L  ++ RG  
Sbjct: 182 KAETAR-KLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMC 240
Query: 176 AACGMIS 182
           AA G  S
Sbjct: 241 AAYGHAS 247

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+    +    + G+ V + AA   V     Q AKL G  V+ +AGS+DK+   K   
Sbjct: 152 LTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL 210
Query: 125 GFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
           G DE  NY    D    ++R    +G D   ++ G    + V+      GRIA  G  S 
Sbjct: 211 GADETVNYT-HPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSG 269
Query: 184 YNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGL 243
           Y     EG     ++  ++L + G  +     L+P     I+  ++EGKL  V      L
Sbjct: 270 Y-----EGTLPFAHVFYRQLSILGSTMASKSRLFP-----ILRFVEEGKLKPVVGQVLPL 319
Query: 244 ESA 246
           E+A
Sbjct: 320 EAA 322

>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh Length = 345

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 24/208 (11%)
Query: 12  VLDSENPEFNKGDLVWGMTGW----------EEYSLITAPHLFKI-QHTDVPLSYYTGIL 60
           V  SE+P F+ G  V  +TGW           E + +    L  + Q  D   +   G  
Sbjct: 90  VRTSEDPRFHAGQEVL-LTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTA 148
Query: 61  GMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           G   M   +   +    P+ GE V ++ ASG VG         LG  VV  +G +   + 
Sbjct: 149 GFTAMLCVMALEDAGVRPQDGEIV-VTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY 207
Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK+  G        E A+     K+ +   ID     VG K+L  VL  M   G +AACG
Sbjct: 208 LKS-LGASRVLPRDEFAESRPLEKQVWAGAID----TVGDKVLAKVLAQMNYGGCVAACG 262
Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEG 207
           +   + L        +M  + + +R++G
Sbjct: 263 LAGGFTLPT-----TVMPFILRNVRLQG 285

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+   + V + + G+ V I A    VG    Q  ++ G   + +AGS+ K+ + + K 
Sbjct: 148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 206
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
           G    FNYK+E    A LK     G+++  + +GG   +  +  + + GR    G++   
Sbjct: 207 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 266
Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLD---------HYHLYPKFLEMIIPH 227
           +++ P        L SK L   G ++              L   F E I+PH
Sbjct: 267 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPH 310

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+   + V + + G+ V I A    VG    Q  ++ G   + +AGS+ K+ + + K 
Sbjct: 132 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 190
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
           G    FNYK+E    A LK     G+++  + +GG   +  +  + + GR    G++   
Sbjct: 191 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 250
Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLD---------HYHLYPKFLEMIIPH 227
           +++ P        L SK L   G ++              L   F E I+PH
Sbjct: 251 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPH 294

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 30/259 (11%)
Query: 23  GDLVWGMT---GWEEYSLITAPHLF-------KIQHTDVPLSYYTGILGMPGMTAYVGFY 72
           GD V G+     + EY L+ A  +         ++   +P +++T          +   +
Sbjct: 110 GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFT---------VWANLF 160
Query: 73  EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY 132
           +      GE V I   +  +G    Q A+  G  V  +AGS  K +  + + G     NY
Sbjct: 161 QXAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINY 219
Query: 133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGV 192
           + E D  A +K    +G+DI  + +G    +  + ++   G ++    +     +K    
Sbjct: 220 RSE-DFAAVIKAETGQGVDIILDXIGAAYFERNIASLAKDGCLSIIAFLGGAVAEK---- 274
Query: 193 HNLMYLVSKRLRMEGFIVL-----DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAP 247
            NL  +  KRL + G         +   +    L  + P ++ G +  V       E   
Sbjct: 275 VNLSPIXVKRLTVTGSTXRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVA 334
Query: 248 AALIGLFSGQNVGKQVVAV 266
            A   L  G +VGK  + V
Sbjct: 335 DAHRLLEEGSHVGKVXLTV 353

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 55  YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
           Y  G+L +  +TA     E    K G+ V + AA+G VG ++ Q  K+ G + +  A + 
Sbjct: 126 YAAGLLQV--LTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD 183
Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGR 174
           +K+ + K ++G +   N  +E  L   LK    +G+D  F++VG    +  L  +K +G 
Sbjct: 184 EKLKIAK-EYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGV 242
Query: 175 IAACGMIS 182
             + G  S
Sbjct: 243 FVSFGNAS 250

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTG----WEEYSLITAPHLFKIQHTDVPLSY-YTGIL 60
           G GV + +  E   F  GD V   TG    + E  ++   +L K+  +   +S+     L
Sbjct: 65  GAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADS---VSFEQAAAL 121
Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
            + G+T      +    K GE +   AA+G VG L  Q+AK LG  ++G+  S +K    
Sbjct: 122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA 181
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL----LDAVLPNMKIRGRIA 176
           K   G  E  +Y  E      L+    +   + ++ VG       LD+V P   +     
Sbjct: 182 K-ALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGN 240
Query: 177 ACGMISQYNL 186
           A G +S  NL
Sbjct: 241 ASGPVSGVNL 250

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 8   GVAKVLDSENPEFNKGDLVW-----GMTGWE-EYSLIT------AP-HLFKIQHTDVPLS 54
           GV + + +E   FN+GD+V+        G   EY LI       AP ++   Q   +PL 
Sbjct: 69  GVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL- 127
Query: 55  YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
             TGI     +    G     +   G+ + I   +G VG +  Q AK  G  V+ +A   
Sbjct: 128 --TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185
Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDI 152
           + ++  K K G D   N+KE     + L ++  +GI++
Sbjct: 186 ETIEWTK-KMGADIVLNHKE-----SLLNQFKTQGIEL 217

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 8   GVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPG 64
           G+ + L      +  GD V        W E        ++KI   D+  S       M  
Sbjct: 70  GIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPD-DMSFSEAAA-FPMNF 127
Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TAYV  +EV + + G  V + +A G VGQ V Q    +    V    S  K + +K+  
Sbjct: 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSV 187
Query: 125 G--FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG 159
              FD   +Y +E      +KR   EG+DI  + + G
Sbjct: 188 THLFDRNADYVQE------VKRISAEGVDIVLDCLCG 218

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK---VDLLK 121
           +TAY    ++   + GE + + +A+G VG    Q A+ LG  V  +A S+DK   V+L +
Sbjct: 331 LTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATA-SEDKWQAVELSR 389
Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
                    +++++  L A   R    G+D+   ++ G+  DA L  +   GR    G  
Sbjct: 390 EHLASSRTCDFEQQF-LGATGGR----GVDVVLNSLAGEFADASLRMLPRGGRFLELG-- 442
Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFL-EMI--IPHIKEGKLVY-VE 237
            + ++  P  V +    VS       +   D     P+ + EM+  +  + EG+++  + 
Sbjct: 443 -KTDVRDPVEVADAHPGVS-------YQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLP 494
Query: 238 DMAEGLESAPAALIGLFSGQNVGKQVVAVAP 268
             A  +  AP AL  L   ++VGK V+ + P
Sbjct: 495 VTAWDVRQAPEALRHLSQARHVGKLVLTMPP 525

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 62  MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
           + G+T Y    +    K  E     AA+G VG +  Q+AK LG  ++G+ G+  K     
Sbjct: 123 LKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 182
Query: 122 NKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
            K G  +  NY+EE DL   LK     + + + +++VG    +  L  ++ RG + + G 
Sbjct: 183 -KAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN 240
Query: 181 IS 182
            S
Sbjct: 241 SS 242

>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase Length = 198

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 61  GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           G+  +TA+    EV     GE V I +A+G VG      AK++G  +  +AGS  K ++L
Sbjct: 20  GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 79
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
            ++ G +   + +     +  L+     G+D+   ++ G+ +   +  +   GR    G 
Sbjct: 80  -SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGK 138
Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD-------HYHLYPKFLEMIIPHIKEGKL 233
              Y  D   G+  L        +   F V+D           Y + L+ I+ H+ +GKL
Sbjct: 139 KDVYA-DASLGLAALA-------KSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKL 190

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 28  GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
           G+  W   ++ +   L ++  +D+PL      LG+   TAY    +    + G+ V  +A
Sbjct: 105 GLGTWRTEAVFSEEALIQV-PSDIPLQS-AATLGVNPCTAYRMLMDFEQLQPGDSVIQNA 162
Query: 88  ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA-LKRYF 146
           ++  VGQ V Q A  LG   +     +  +  L ++     A +   E +L    +K +F
Sbjct: 163 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF 222
Query: 147 PE--GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR 204
            +     +    VGGK    +L  +   G      M++   + K   V ++  L+ K L+
Sbjct: 223 KDMPQPRLALNCVGGKSSTELLRQLARGGT-----MVTYGGMAKQPVVASVSLLIFKDLK 277
Query: 205 MEGFIV--LDHYHLYPKFLEMIIP---HIKEGKL-------VYVEDMAEGLESA 246
           + GF +      H   +F E+I+     I+ G+L       V ++D    LE++
Sbjct: 278 LRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS 331

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 28  GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
           G+  W   ++ +   L ++  +D+PL      LG+   TAY    +    + G+ V  +A
Sbjct: 118 GLGTWRTEAVFSEEALIQV-PSDIPLQS-AATLGVNPCTAYRMLMDFEQLQPGDSVIQNA 175
Query: 88  ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA-LKRYF 146
           ++  VGQ V Q A  LG   +     +  +  L ++     A +   E +L    +K +F
Sbjct: 176 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF 235
Query: 147 PE--GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR 204
            +     +    VGGK    +L  +   G      M++   + K   V ++  L+ K L+
Sbjct: 236 KDMPQPRLALNCVGGKSSTELLRQLARGGT-----MVTYGGMAKQPVVASVSLLIFKDLK 290
Query: 205 MEGFIV--LDHYHLYPKFLEMIIP---HIKEGKL-------VYVEDMAEGLESA 246
           + GF +      H   +F E+I+     I+ G+L       V ++D    LE++
Sbjct: 291 LRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS 344

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
           G+TA+    E    + G+ V +   +G V     Q AK  G  V+ ++ S++K+D     
Sbjct: 174 GLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFA 231
Query: 124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
            G D   N  EE  +          G D   E  GG  L   L  +   GRI+  G++  
Sbjct: 232 LGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEG 291
Query: 184 YNLDKPEG 191
           + +  P G
Sbjct: 292 FEVSGPVG 299

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	1e-169
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-155
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	1e-147
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-92
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-25
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	6e-25
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-24
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-23
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-22
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-22
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-22
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-22
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	6e-22
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-21
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	2e-21
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-21
3gms_A	340	Putative NADPH:quinone reductase; structural genom	7e-21
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	1e-20
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-20
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-20
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-20
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-20
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	6e-20
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	6e-20
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-19
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	3e-16
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	4e-16
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	2e-15
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	7e-15
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	9e-15
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-14
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	7e-14
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-13
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-10
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	2e-09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-08
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-07
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	7e-06
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-05
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-05
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-05

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score =  471 bits (1214), Expect = e-169
 Identities = 193/269 (71%), Positives = 228/269 (84%), Gaps = 2/269 (0%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAP--HLFKIQHTDVPLSYYTGI 59
           QPI GYGV+++++S +P++ KGDL+WG+  WEEYS+IT      FKIQHTDVPLSYYTG+
Sbjct: 76  QPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL 135

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDL
Sbjct: 136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           LK KFGFD+AFNYKEE+DL AALKR FP GIDIYFENVGGK+LDAVL NM + GRIA CG
Sbjct: 196 LKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCG 255

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
           MISQYNL+  EGVHNL  ++ KR R++GF+V D Y  Y KFLE ++PHI+EGK+ YVED+
Sbjct: 256 MISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315

Query: 240 AEGLESAPAALIGLFSGQNVGKQVVAVAP 268
           A+GLE AP AL+GLF G+NVGKQVV VA 
Sbjct: 316 ADGLEKAPEALVGLFHGKNVGKQVVVVAR 344

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score =  434 bits (1118), Expect = e-155
 Identities = 119/268 (44%), Positives = 162/268 (60%), Gaps = 6/268 (2%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKI---QHTDVPLSYYTG 58
             + G  VA+V++S+N  F  G +V   +GW  + +     L K+       +PLS   G
Sbjct: 65  AVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALG 124

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
            +GMPG+TAY G  EVC  K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +K+ 
Sbjct: 125 TIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA 184

Query: 119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
            LK + GFD AFNYK    L  ALK+  P+G D YF+NVGG+ L+ VL  MK  G+IA C
Sbjct: 185 YLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAIC 243

Query: 179 GMISQYNL-DKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYV 236
           G IS YN  D+     +   ++ K+LR+EGFIV      +  K L  ++  + EGK+ Y 
Sbjct: 244 GAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYH 303

Query: 237 EDMAEGLESAPAALIGLFSGQNVGKQVV 264
           E + +G E+ PAA I + +G N+GK VV
Sbjct: 304 EHVTKGFENMPAAFIEMLNGANLGKAVV 331

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score =  413 bits (1065), Expect = e-147
 Identities = 93/277 (33%), Positives = 143/277 (51%), Gaps = 11/277 (3%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMT-GWEEYSLITAPHLFKI--QHTDVPLSYYTG 58
           Q + G G+  + +S++    KGD V      W+   ++    L K+  Q  D  LSY+ G
Sbjct: 78  QVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 137

Query: 59  ILGMPGMTAYVGFYEVCSPKHG--ECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKD 115
            +GMPG+T+ +G  E      G  + + +S A+GA G + GQ    LGC  VVG  G+ +
Sbjct: 138 AIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE 197

Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           K  LL ++ GFD A NYK++ ++   L+   P G+D+YF+NVGG + D V+  M     I
Sbjct: 198 KCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHI 256

Query: 176 AACGMISQYNLDKPEGV----HNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
             CG ISQYN D P               + +  E F+VL++   +   +  +    KEG
Sbjct: 257 ILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEG 316

Query: 232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP 268
           KL   E +  GLE+  AA   + +G N+GKQ+V ++ 
Sbjct: 317 KLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISE 353

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  276 bits (707), Expect = 2e-92
 Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 8   GVAKVLDSENPEFNKGDLVWGMT--GWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGM 65
            V  +  S +  +  G  V  M    + EY+++ A     +         Y   L + G 
Sbjct: 94  EVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIATPV---PSVKPEYLT-LLVSGT 149

Query: 66  TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG 125
           TAY+   E+     G+ V ++AA+G  GQ   Q +K   C+V+G+  S +K   LK   G
Sbjct: 150 TAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLG 208

Query: 126 FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYN 185
            D   NYK E  +   LK+ +PEG+D+ +E+VGG + D  +  +  +GR+   G IS Y 
Sbjct: 209 CDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ 267

Query: 186 ----LDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA- 240
               L   +       L+ K   ++GF +  +   Y   +  ++     G LV   D+  
Sbjct: 268 TPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGD 327

Query: 241 -------EGLESAPAALIGLFSGQNVGKQVVAVA 267
                   GLES   A+  ++ G+N GK VV + 
Sbjct: 328 LSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 361

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  102 bits (256), Expect = 1e-25
 Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 24/260 (9%)

Query: 19  EFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTGILGMP--GMTAYVGF 71
            +  GD V G+     + EY L+ A  +        P           +P    T +   
Sbjct: 106 GYAVGDKVCGLANGGAYAEYCLLPAGQILPF-----PKGYDAVKAA-ALPETFFTVWANL 159

Query: 72  YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN 131
           +++     GE V I   +  +G    Q A+  G  V  +AGS  K +  + + G     N
Sbjct: 160 FQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGIN 218

Query: 132 YKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEG 191
           Y+ E D  A +K    +G+DI  + +G    +  + ++   G ++    +        E 
Sbjct: 219 YRSE-DFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGA---VAEK 274

Query: 192 VHNLMYLVSKRLRMEGFI-----VLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESA 246
           V NL  ++ KRL + G         +   +    L  + P ++ G +  V       E  
Sbjct: 275 V-NLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDV 333

Query: 247 PAALIGLFSGQNVGKQVVAV 266
             A   L  G +VGK ++ V
Sbjct: 334 ADAHRLLEEGSHVGKVMLTV 353

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  100 bits (251), Expect = 6e-25
 Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 27/267 (10%)

Query: 9   VAKVLDSENPEFNKGDLVWGMT------GWEEYSLITAPHLFKIQHTDVP--LSYYTG-I 59
           +    D    +   G  V   T       W EY++  A          +   +    G  
Sbjct: 91  IVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIP-----LLDTVRDEDGAA 145

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           + +  +TA    +++   +  +   ++A +  + +L+   AK  G   + +    +++ L
Sbjct: 146 MIVNPLTAI-AMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIAL 204

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
           LK   G     N K   D  A L+     E   I+ + V G L  A+   M  R R    
Sbjct: 205 LK-DIGAAHVLNEKAP-DFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIY 262

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYP----KFLEMIIPHIKEGKLV 234
           G +          +     L+ +   +EGF + +    +       +        +G+  
Sbjct: 263 GRLDP----DATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS 318

Query: 235 YVEDMAEGLESAPAALIGLFSGQNVGK 261
                   L  A A +      +  GK
Sbjct: 319 TDVTAVVPLAEAIAWVP-AELTKPNGK 344

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 59/273 (21%), Positives = 97/273 (35%), Gaps = 32/273 (11%)

Query: 19  EFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYVGFY 72
            +  GD V        W E        ++KI     P  +S+       M  +TAYV  +
Sbjct: 81  GYEIGDRVMAFVNYNAWAEVVCTPVEFVYKI-----PDDMSFSEAAAFPMNFVTAYVMLF 135

Query: 73  EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY 132
           EV + + G  V + +A G VGQ V Q    +    V    S  K + +K+       F+ 
Sbjct: 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD--SVTHLFDR 193

Query: 133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGV 192
               D    +KR   EG+DI  + + G      L  +K  G     G  +    +     
Sbjct: 194 NA--DYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFF 251

Query: 193 H-----------NLMYLVSKRLRMEGFIVLDHYHLYPK------FLEMIIPHIKEGKLVY 235
                       N + L  +   + GF +L+      +       +E +I    + K+  
Sbjct: 252 SFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKP 311

Query: 236 VEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP 268
           V D    LE    A+  +    N+GK ++ V  
Sbjct: 312 VVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK 344

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 96.1 bits (240), Expect = 2e-23
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 13/209 (6%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           + +  +TA+    +    + G+ V + AA   V     Q AKL G  V+ +AGS+DK+  
Sbjct: 147 IPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRR 206

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
            K   G DE  NY    D    ++R    +G D   ++ G    + V+      GRIA  
Sbjct: 207 AK-ALGADETVNYTHP-DWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIA 264

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVED 238
           G  S       EG     ++  ++L + G  +          L  I+  ++EGKL  V  
Sbjct: 265 GASSG-----YEGTLPFAHVFYRQLSILGSTMASKSR-----LFPILRFVEEGKLKPVVG 314

Query: 239 MAEGLESAPAALIGLFSGQNVGKQVVAVA 267
               LE+A      L   +  GK V+ V 
Sbjct: 315 QVLPLEAAAEGHRLLEERRVFGKVVLQVG 343

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 48/262 (18%), Positives = 92/262 (35%), Gaps = 25/262 (9%)

Query: 20  FNKGDLV----WGMTGWEEYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYVGFY 72
              GD V     G+  W   ++ +   L ++     P  +   +   LG+   TAY    
Sbjct: 106 LKPGDWVIPANAGLGTWRTEAVFSEEALIQV-----PSDIPLQSAATLGVNPCTAYRMLM 160

Query: 73  EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEA 129
           +    + G+ V  +A++  VGQ V Q A  LG   +     +  +  L +     G +  
Sbjct: 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 220

Query: 130 FNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKP 189
              +E                 +    VGGK    +L  +   G +   G ++     K 
Sbjct: 221 ITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMA-----KQ 275

Query: 190 EGVHNLMYLVSKRLRMEGFIVLDHYHLYP-----KFLEMIIPHIKEGKLVYVEDMAEGLE 244
             V ++  L+ K L++ GF +      +      + +  +   I+ G+L         L+
Sbjct: 276 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQ 335

Query: 245 SAPAALIGLFSGQNVGKQVVAV 266
              +AL          KQ++ +
Sbjct: 336 DYQSALEASMKPFISSKQILTM 357

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 50/229 (21%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 60  LGMPGMTAYVGFYEVCS--PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
            G+   TAY           K G+ V I  ASG +G    QFA   G   +    S  K 
Sbjct: 207 PGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 266

Query: 118 DLLKNKFGFDEAFNYKEEADLN-----------------AALKRYFPEGIDIYFENVGGK 160
           ++ +   G +   +   E                        +    E IDI FE+ G +
Sbjct: 267 EICR-AMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE 325

Query: 161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF 220
              A +   +  G I  C   S Y  +         YL     R+ G     H+  Y + 
Sbjct: 326 TFGASVFVTRKGGTITTCASTSGYMHEYD-----NRYLWMSLKRIIGS----HFANYREA 376

Query: 221 LEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV-AP 268
            E     I +G++         LE    A   +    + GK  V   AP
Sbjct: 377 WEA-NRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCLAP 424

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 49/229 (21%), Positives = 70/229 (30%), Gaps = 31/229 (13%)

Query: 60  LGMPGMTAY--VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
             +   TAY  +        K G+ V I  ASG +G    QF K  G   V    S  K 
Sbjct: 199 SPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKE 258

Query: 118 DLLKNKFGFDEAFNYKEE-----------------ADLNAALKRYFPEGIDIYFENVGGK 160
             ++   G D   N  E                    L   +        DI FE+ G  
Sbjct: 259 AAVR-ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV 317

Query: 161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF 220
                +   +  G +  CG  S Y         +  YL  K  ++ G    +H       
Sbjct: 318 TFGLSVIVARRGGTVVTCGSSSGYLHT-----FDNRYLWMKLKKIVGSHGANHEE----- 367

Query: 221 LEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV-AP 268
            +      + G +V        L  A  A   + + + VGK  V   AP
Sbjct: 368 QQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCMAP 416

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 92.8 bits (231), Expect = 5e-22
 Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 36/275 (13%)

Query: 20  FNKGDLV----WGMTGWEEYSLITAPHLFKIQHTDVPLSYYT--GI-------LGMPGMT 66
              GD V         W  ++L       K+ +     +     G+       + +  +T
Sbjct: 94  LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 153

Query: 67  AYVGFYEVCSPKHGECVFI-SAASGAVGQLVGQFAKLLGCYVVGSAGSK----DKVDLLK 121
           AY+          G+  FI +  + AVG+   Q  KLL    +     +    + V  LK
Sbjct: 154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 213

Query: 122 NKFGFDEAFNYKEE--ADLNAALKRYF---PEGIDIYFENVGGKLLDAVLPNMKIRGRIA 176
            + G  +     +    +    +K +         +    VGGK    +   +   G + 
Sbjct: 214 -ELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLML 272

Query: 177 ACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF----IVLDHYHLYPKFLEMIIPHIKEGK 232
             G +S                + K     GF    ++ ++  L    L  II   +EGK
Sbjct: 273 TYGGMS-----FQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 327

Query: 233 LVYVEDMA---EGLESAPAALIGLFSGQNVGKQVV 264
           L   + +    +G +          +    GKQ++
Sbjct: 328 LTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 92.3 bits (230), Expect = 6e-22
 Identities = 61/279 (21%), Positives = 113/279 (40%), Gaps = 29/279 (10%)

Query: 4   ISGYGVAKVLDSENPEFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTG 58
            SG  VA++       +  GD    +    G  +Y  +    L  I     P  L+    
Sbjct: 87  ASG-HVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPI-----PEGLTLTQA 140

Query: 59  ILGMP--GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK 116
              +P   +TA+   + V + + G+ V I A    VG    Q  ++ G   + +AGS+ K
Sbjct: 141 -AAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKK 199

Query: 117 VDLLKNKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           + + + K G    FNYK+E D + A  ++    G+++  + +GG   +  +  + + GR 
Sbjct: 200 LQMAE-KLGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRW 257

Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF-----IVLDHYHLYPKFLEMIIPHI-- 228
              G++   +++ P        L+ KR  +               L   F E I+PH   
Sbjct: 258 VLYGLMGGGDINGP----LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFST 313

Query: 229 -KEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
               +L+ V D    +     A   + + +N+GK V+ +
Sbjct: 314 EGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLEL 352

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 17/257 (6%)

Query: 19  EFNKGDLV-WGMTGW--EEYSLITAPHLFKI--QHTDVPLSYYTGILGMPGMTAYVGFYE 73
            F  GD V +       +   + +   + K+    +D  L  Y   L +  +TA     E
Sbjct: 84  NFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGL-LQVLTALSFTNE 142

Query: 74  VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK 133
               K G+ V + AA+G VG ++ Q  K+ G + +  A + +K+ + K ++G +   N  
Sbjct: 143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINAS 201

Query: 134 EEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGV 192
           +E D+   + ++   +G+D  F++VG    +  L  +K +G   + G  S          
Sbjct: 202 KE-DILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASG----LIPPF 256

Query: 193 HNLMYLVSKRLRMEGFIVLDHYHLYPKFLEM---IIPHIKEGKLVYVEDMAEGLESAPAA 249
            ++  L  K + +    +  +     ++          +   KL         L     A
Sbjct: 257 -SITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTA 315

Query: 250 LIGLFSGQNVGKQVVAV 266
              + S + VGK V+ +
Sbjct: 316 AADIESRKTVGKLVLEI 332

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 51/270 (18%), Positives = 94/270 (34%), Gaps = 36/270 (13%)

Query: 19  EFNKGDLVWGMTGWE--------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMP 63
            F  GD V+G+TG          +++ + A  L      +       +PL          
Sbjct: 84  SFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLV--------- 134

Query: 64  GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
            +TA+ G  +    + G+ V I    G VG +  Q A   G  V  +A     ++ ++  
Sbjct: 135 FITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATA-RGSDLEYVR-D 192

Query: 124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
            G       +E  D  A       +G D+ ++ +GG +LDA    +K  G + +C     
Sbjct: 193 LGATPIDASREPEDYAAEHTA--GQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGT 250

Query: 184 YNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKL-VYVEDMAEG 242
           + L  P       Y     L     +  +    + + L      ++ GKL   ++     
Sbjct: 251 HKL-APLSFKQATYSGVFTLHT--LLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFS 307

Query: 243 LESAPAALIGLF----SGQNVGKQVVAVAP 268
           +    +A   +       +  GK  + V  
Sbjct: 308 IAEIGSAYDAVLGRNDVPRQRGKIAITVEG 337

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 90.3 bits (225), Expect = 3e-21
 Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 36/264 (13%)

Query: 19  EFNKGDLVWGMTGWE----EYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYVGF 71
            F KGD V+  +       EY+L     ++K+     P  L +  G  +G+P  TAY   
Sbjct: 108 AFKKGDRVFTSSTISGGYAEYALAADHTVYKL-----PEKLDFKQGAAIGIPYFTAYRAL 162

Query: 72  YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN 131
                 K GE V +  ASG VG    Q A+  G  ++G+AG+++   ++  + G  E FN
Sbjct: 163 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFN 221

Query: 132 YKEEADLNAALKRY-FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPE 190
           ++E  +    +K+Y   +GIDI  E +    L   L  +   GR+   G      +    
Sbjct: 222 HREV-NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGTIEI---- 276

Query: 191 GVHNLMYLVSKRLRMEGFIVLDHYHLYP-------KFLEMIIPHIKEGKLVYVEDMAEGL 243
              N    ++K   + G        L+        ++   +   ++ G L  V      L
Sbjct: 277 ---NPRDTMAKESSIIGV------TLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPL 327

Query: 244 ESAPAALIGLF-SGQNVGKQVVAV 266
           E    A   +       GK ++ +
Sbjct: 328 EKVAEAHENIIHGSGATGKMILLL 351

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 89.2 bits (222), Expect = 7e-21
 Identities = 36/257 (14%), Positives = 95/257 (36%), Gaps = 17/257 (6%)

Query: 19  EFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYVGFY 72
               G  V  +     W+EY   +A  +       +P  +  +T   + +  +TA+V   
Sbjct: 83  RELIGKRVLPLRGEGTWQEYVKTSADFVVP-----IPDSIDDFTAAQMYINPLTAWVTCT 137

Query: 73  EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY 132
           E  + +  + + ++A   A+G L  Q +++L   ++    +    + L  + G     + 
Sbjct: 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLGAAYVIDT 196

Query: 133 KEEADLNAALKRY-FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEG 191
                L   +       G D   +++GG   + +  +++  G     G++S   ++    
Sbjct: 197 STA-PLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVN-WAE 254

Query: 192 VHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVE-DMAEGLESAPAAL 250
           +     + +    +  +      + + +    +I  ++  +L +++      L    AA+
Sbjct: 255 IVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAV 314

Query: 251 IGLFSGQ-NVGKQVVAV 266
             + S +   GK  +  
Sbjct: 315 DVVQSAEKTKGKVFLTS 331

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 88.8 bits (221), Expect = 1e-20
 Identities = 58/263 (22%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVP--LSYYT-GILGM 62
             G+             G    G     EY ++             P  L       L  
Sbjct: 120 LDGLRPGTGRTPAYETLGGAHPG--VLSEYVVLPEGWFVAA-----PKSLDAAEASTLPC 172

Query: 63  PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
            G+TA+    E    + G+ V +    G V     Q AK  G  V+ ++ S++K+D    
Sbjct: 173 AGLTAWFALVEKGHLRAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAF- 230

Query: 123 KFGFDEAFNYKEEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
             G D   N  EE D    +       G D   E  GG  L   L  +   GRI+  G++
Sbjct: 231 ALGADHGINRLEE-DWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVL 289

Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAE 241
                   E    +  L+ K   ++G  V           ++ +  +    L  V DM  
Sbjct: 290 EG-----FEVSGPVGPLLLKSPVVQGISVGHRRA----LEDL-VGAVDRLGLKPVIDMRY 339

Query: 242 GLESAPAALIGLFSGQNVGKQVV 264
                P AL  L  G   GK V+
Sbjct: 340 KFTEVPEALAHLDRGP-FGKVVI 361

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 49/260 (18%), Positives = 83/260 (31%), Gaps = 25/260 (9%)

Query: 16  ENPEFNKGDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYV 69
           E      GD V       G+ E   +   ++        P  L       L     T Y 
Sbjct: 95  EGSGIKPGDRVMAFNFIGGYAERVAVAPSNILPT-----PPQLDDAEAVALIANYHTMYF 149

Query: 70  GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA 129
            +      + GE V +  A+G +G    Q AK +G  V+         + +K   G D  
Sbjct: 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVGADIV 208

Query: 130 FNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDK 188
              +E      A++      G+D+  + +GG   D  +  +   GR+   G  +      
Sbjct: 209 LPLEE--GWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAG---GI 263

Query: 189 PEGVHNLMYLVSKRLRMEGF----IVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLE 244
           P     +  L+ +   + G      +  H     +    +   + EG    V      L 
Sbjct: 264 PT--IKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEGMRPPV-SARIPLS 320

Query: 245 SAPAALIGLFSGQNVGKQVV 264
               AL     G+  GK V+
Sbjct: 321 EGRQALQDFADGKVYGKMVL 340

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 19  EFNKGDLV-WGMTGW---EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV 74
            F  GD V +G        E  ++   +L K+    V       ++ + G+T      + 
Sbjct: 78  RFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLAD-SVSFEQAAALM-LKGLTVQYLLRQT 135

Query: 75  CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE 134
              K GE +   AA+G VG L  Q+AK LG  ++G+  S +K    K   G  E  +Y  
Sbjct: 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETIDYSH 194

Query: 135 EADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           E D+   +      +   + ++ VG       L ++  RG + + G  S
Sbjct: 195 E-DVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS 242

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 87.3 bits (217), Expect = 3e-20
 Identities = 61/262 (23%), Positives = 90/262 (34%), Gaps = 43/262 (16%)

Query: 19  EFNKGDLVWGMTGWE-------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMPG 64
             N GD V G+ G+        EY   +   + +    +       +P +         G
Sbjct: 88  NVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTA---------G 138

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA          K G+ V I A +G VG L  Q AK  G  V+ +A SK     LK   
Sbjct: 139 LTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK-AL 195

Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
           G ++  NY EE D   A+       +D   + VGG +    +  +K  G I +       
Sbjct: 196 GAEQCINYHEE-DFLLAI----STPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPT---- 246

Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLE 244
                     +     K  R  G +   +     + L  +   + E KL         L 
Sbjct: 247 ----ITAGRVIEVAKQKHRRAFGLLKQFN----IEELHYLGKLVSEDKLRIEISRIFQLS 298

Query: 245 SAPAALIGLFSGQNVGKQVVAV 266
            A  A   L +G   GK V  V
Sbjct: 299 EAVTAHELLETGHVRGKLVFKV 320

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 87.3 bits (217), Expect = 3e-20
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 19  EFNKGDLV-WGMTGW---EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV 74
               GD V +  +          I A     +    +          + G+T Y    + 
Sbjct: 78  HIKAGDRVVYAQSALGAYSSVHNIIADKAAILPA-AISFEQAAASF-LKGLTVYYLLRKT 135

Query: 75  CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE 134
              K  E     AA+G VG +  Q+AK LG  ++G+ G+  K      K G  +  NY+E
Sbjct: 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYRE 194

Query: 135 EADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
           E DL   LK     + + + +++VG    +  L  ++ RG + + G  S
Sbjct: 195 E-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSS 242

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 87.1 bits (216), Expect = 6e-20
 Identities = 57/274 (20%), Positives = 94/274 (34%), Gaps = 40/274 (14%)

Query: 19  EFNKGDLVWGMTGWE------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMPGM 65
            F  GD VW            E+ +++   +      + HT    +P            +
Sbjct: 115 YFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYV---------AL 165

Query: 66  TAYVGFYEV----CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
           TA+    +V         G+ V I  ASG VG    Q  K    +V     S+D  +L++
Sbjct: 166 TAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR 224

Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIR--GRIAACG 179
            K G D+  +YK    +   LK    +  D   +NVGG         +K           
Sbjct: 225 -KLGADDVIDYKSG-SVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLV 280

Query: 180 MISQYNLDK----PEGVHNLMYLVSKRLRMEGFIVLDHYHLY---PKFLEMIIPHIKEGK 232
                N+D+       +   + + SK L+     V   +  +      L+ I   +  GK
Sbjct: 281 TPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGK 340

Query: 233 LVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
           +  V +        P A + +  G   GK V+ V
Sbjct: 341 IRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV 374

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 86.5 bits (215), Expect = 6e-20
 Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 17/255 (6%)

Query: 19  EFNKGDLV-WGMTGW---EEYSLITAPHLFKI-QHTDVPLSYYTGILGMPGMTAYVGFYE 73
           +F  G+ V   +       +  L  A  L K+ +  D+   +  G++ + GMTA    ++
Sbjct: 81  DFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLM-LKGMTAQYLLHQ 139

Query: 74  VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK 133
               K G+ V I AA+G +G ++  +A+ LG  V+G+  +++K +  + K G     NY 
Sbjct: 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHHTINYS 198

Query: 134 EEADLNAALKRYFP-EGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGV 192
            + D    ++     +G+D+ ++++G   L   L  ++ RG  AA G  S       + +
Sbjct: 199 TQ-DFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASG----VADPI 253

Query: 193 HNLMYLVSKR-LRMEGFIVLDHYHLYPKFLEM---IIPHIKEGKLVYVEDMAEGLESAPA 248
             +  L  +  L +    +  +     +  E    +   +K G L         L  A A
Sbjct: 254 RVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAA 313

Query: 249 ALIGLFSGQNVGKQV 263
           A   +   Q +G  V
Sbjct: 314 AHKYMGGRQTIGSIV 328

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 41/306 (13%), Positives = 87/306 (28%), Gaps = 54/306 (17%)

Query: 3   PISGYGVAKV---LDSENPEFNKGDLVWGMT-----------GWEEYSLITAPHLFKIQH 48
              G   A     + S+      GD V+G              + +Y++       KI  
Sbjct: 64  AFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKI-- 121

Query: 49  TDVP--LSYYTG-ILGMPGMTAYVGFYEV------------CSPKHGECVFISAASGAVG 93
              P  LS+     L     TA +    +             +      V +   S A  
Sbjct: 122 ---PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATA 178

Query: 94  QLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIY 153
            +  Q  +L G   + +  S    DL K   G +E F+Y+   +L   ++ Y    +   
Sbjct: 179 TVTMQMLRLSGYIPIATC-SPHNFDLAK-SRGAEEVFDYRAP-NLAQTIRTYTKNNLRYA 235

Query: 154 FENVGGK-----LLDAVLPNMKIRGRIAACGMISQYNLDKP--EGVHNLMYLVSKRLRME 206
            + +           A+       G   +     ++   +        L   +       
Sbjct: 236 LDCITNVESTTFCFAAIGRA---GGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTW 292

Query: 207 GFIVL-----DHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEGLESAPAALIGLFSGQNV 259
                     +          +    +++G+L    +  +  G +     +  +  G+  
Sbjct: 293 PAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELS 352

Query: 260 GKQVVA 265
           G+++V 
Sbjct: 353 GEKLVV 358

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 65/282 (23%), Positives = 99/282 (35%), Gaps = 56/282 (19%)

Query: 20  FNKGDLVWGMTGWE------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMPGMT 66
           FN+GD+V+     +      EY LI    + K    I       +PL   TGI      T
Sbjct: 81  FNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL---TGI------T 131

Query: 67  AY------VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
           AY       G     +   G+ + I   +G VG +  Q AK  G  V+ +A   + ++  
Sbjct: 132 AYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT 191

Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-LLDAVLPNMKIRGRIAACG 179
           K K G D   N+KE   L    K    E +D  F         D ++  +K RG IA   
Sbjct: 192 K-KMGADIVLNHKE--SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATI- 247

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLR----------MEGFIVLDHYHLYPKFLEMIIPHIK 229
                     E   +L  L  K L           +     +  +H   ++LE I   ++
Sbjct: 248 -------VAFENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHH---EYLEDITNKVE 297

Query: 230 EGKLVYVEDMAEG---LESAPAALIGLFSGQNVGKQVVAVAP 268
           +                E+   A   L S   +GK V+ +  
Sbjct: 298 QNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE 339

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 59/253 (23%), Positives = 97/253 (38%), Gaps = 28/253 (11%)

Query: 23  GDLVWGMT---GWEEYSLITAPHLFKIQHTDVP--LSYYTG-ILGMPGMTAYVGFYEVCS 76
           G     +    G  E   +    L  +     P  LS        +  +TAY+   +   
Sbjct: 69  GRRYAALVPQGGLAERVAVPKGALLPL-----PEGLSPEEAAAFPVSFLTAYLAL-KRAQ 122

Query: 77  PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEA 136
            + GE V + AA+GA+G    Q A+ +G  V+ +A   +K+ L     G +EA  Y E  
Sbjct: 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAEVP 181

Query: 137 DLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLM 196
           +   A       G+D+  E V GK ++  L  +   GR+   G       +        +
Sbjct: 182 ERAKAWG-----GLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEG---EVAPI--PPL 230

Query: 197 YLVSKRLRMEGF---IVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGL 253
            L+ + L + GF    +L    L  + L  ++P +   +L  V         A AA   L
Sbjct: 231 RLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRL-GRELRPVVGPVFPFAEAEAAFRAL 289

Query: 254 FSGQNVGKQVVAV 266
               + GK VV +
Sbjct: 290 LDRGHTGKVVVRL 302

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 66/283 (23%), Positives = 98/283 (34%), Gaps = 56/283 (19%)

Query: 12  VLDSENPEFNKGDLV----W--GMT---GWEEYSLITAPHLFKIQHTDVPL-----SYYT 57
           V  SE+P F+ G  V    W  G     G  E + +    L       V L     S   
Sbjct: 69  VHASEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWL-------VALPAGLSSRNA 121

Query: 58  GILGMPGMTAYVGFYEVCS---PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
            I+G  G TA +    +           V ++ ASG VG         LG  V   +G +
Sbjct: 122 MIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRE 181

Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGR 174
                LK   G +   +  E A+     K+ +   ID     VG K+L  VL  M   G 
Sbjct: 182 STHGYLK-SLGANRILSRDEFAESRPLEKQLWAGAID----TVGDKVLAKVLAQMNYGGC 236

Query: 175 IAACGMISQYNLD-----------KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEM 223
           +AACG+   + L            + +GV ++M   ++R      +V D   L   F   
Sbjct: 237 VAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKD---LPESFYAQ 293

Query: 224 IIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
               I              L  AP     + + Q  G+ +V +
Sbjct: 294 AATEI-------------TLADAPKFADAIINNQVQGRTLVKI 323

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 72.7 bits (178), Expect = 7e-15
 Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 15/194 (7%)

Query: 6   GYGVAKVLDSENPEFNKGDLVWGMTG---WEEYSLITAPHLFKIQHTDVP--LSYYTGI- 59
           G GV     S               G   + +Y  I A          +P   +   G  
Sbjct: 98  GAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLV-----LPEGATPADGAS 152

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             +  +TA  G  E    +    +  +AA+  +GQ++ Q     G  +V     +++ DL
Sbjct: 153 SFVNPLTAL-GMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADL 211

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRY-FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
           LK   G     N          L       G  I F+  GG  L   +          + 
Sbjct: 212 LK-AQGAVHVCNAASP-TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSA 269

Query: 179 GMISQYNLDKPEGV 192
              S+Y     + V
Sbjct: 270 REYSRYGSTTHKQV 283

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 12  VLDSENPEFNKGDLV----W--GMT---GWEEYSLITAPHLFKIQHTDVPLS-YYTGILG 61
           V+ S++P F +GD V    +  G+T   G+ EY+ +    L  +      L+      +G
Sbjct: 72  VVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKG---LTLKEAMAIG 128

Query: 62  MPGMTAYVG---FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
             G TA +      E         V ++ A+G VG L        G  V  S G   + D
Sbjct: 129 TAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 188

Query: 119 LLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIA 176
            L+   G  E    ++     +    K+ +   +D     VGG+ L  VL  M+  G +A
Sbjct: 189 YLR-VLGAKEVLAREDVMAERIRPLDKQRWAAAVD----PVGGRTLATVLSRMRYGGAVA 243

Query: 177 ACGMISQYNLD 187
             G+     + 
Sbjct: 244 VSGLTGGAEVP 254

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 40/259 (15%), Positives = 73/259 (28%), Gaps = 37/259 (14%)

Query: 19  EFNKGDLVWGMTGWE------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMPGM 65
               G  V   T  +      E++++    +      +       +P          P +
Sbjct: 79  SKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPC---------PLL 129

Query: 66  TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG 125
           TA+  F E         V I    GAV  L+ Q     G  V     +     L   K G
Sbjct: 130 TAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDL-VSASLSQALAA-KRG 185

Query: 126 FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYN 185
               +    +            +     F+ V  +   A++P++K  G I          
Sbjct: 186 VRHLYREPSQV----------TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPAP 235

Query: 186 LDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLES 245
           +D P     + Y       +  F     + +  +  E ++  I +GK+          E 
Sbjct: 236 ID-PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQ 294

Query: 246 APAALIGLFSGQNVGKQVV 264
              AL      +      +
Sbjct: 295 MIEALDHSEQTKLKTVLTL 313

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 12  VLDSENPEFNKGDLV----W--GMT---GWEEYSLITAPHLFKIQHTDVPLS-YYTGILG 61
           V+ S +P F +GD V    +  G++   G  EY+ +    L  +      LS     + G
Sbjct: 73  VVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQN---LSLKEAMVYG 129

Query: 62  MPGMTAYVGFYEVCS---PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
             G TA +  + +           V ++ A+G VG +        G  VV S G+++  D
Sbjct: 130 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 189

Query: 119 LLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIA 176
            LK + G  E  + ++  +  L A  K+ +   +D     VGGK L ++L  ++  G +A
Sbjct: 190 YLK-QLGASEVISREDVYDGTLKALSKQQWQGAVD----PVGGKQLASLLSKIQYGGSVA 244

Query: 177 ACGMISQYNLD 187
             G+     + 
Sbjct: 245 VSGLTGGGEVP 255

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 32/180 (17%)

Query: 19  EFNKGDLVWGMTGWE------EYSLITAPHLFK----IQHTD---VPLSYYTGILGMPGM 65
            F  GD V+            E+ L+    + +    +   +   +PL   T I      
Sbjct: 102 LFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPL---TSI------ 152

Query: 66  TAYVGFYEV-----CSPKHGECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGSKDKVDL 119
           TA+  F++        P     + I   +G VG +  Q A+      V+ +A   +  + 
Sbjct: 153 TAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEW 212

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGID-IYFENVGGKLLDAVLPNMKIRGRIAAC 178
           +K   G     ++ +   L A +          ++      K    +   +  +GR    
Sbjct: 213 VK-SLGAHHVIDHSK--PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 21/247 (8%)

Query: 21  NKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG 80
             G    G   + EY ++            +        L   G+T Y       S    
Sbjct: 117 WLGINFDG--AYAEYVIVPHYKYMYKLR-RLNAVE-AAPLTCSGITTYRAV-RKASLDPT 171

Query: 81  ECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN 139
           + + +  A G +G +  Q AK +    ++G    ++ V+  K + G D   N   + D  
Sbjct: 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASMQ-DPL 229

Query: 140 AALKRYFP-EGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMY 197
           A ++R    +G+D   +     K L      +  +G+    G+         +  ++   
Sbjct: 230 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG------ADLHYHAPL 283

Query: 198 LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQ 257
           +    ++  G +V  +   +   + +     + GK+  +      LE A  A+  L + +
Sbjct: 284 ITLSEIQFVGSLVG-NQSDFLGIMRL----AEAGKVKPMITKTMKLEEANEAIDNLENFK 338

Query: 258 NVGKQVV 264
            +G+QV+
Sbjct: 339 AIGRQVL 345

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 65  MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
           +TA+    EV     GE V I +A+G VG      AK++G  +  +AGS  K ++L  + 
Sbjct: 24  LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RL 82

Query: 125 GFDEAFN 131
           G +   +
Sbjct: 83  GVEYVGD 89

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 27/226 (11%)

Query: 51   VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS 110
            VP+ Y          TAY         + GE V I + SG VGQ     A   GC V  +
Sbjct: 1648 VPIVY---------TTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTT 1698

Query: 111  AGSKDKVDLLKNKF-GFDEA---------FNYKEEADLNAALKRYFPEGIDIYFENVGGK 160
             GS +K   L+ +F   DE          F   E+  L     +    G+D+   ++  +
Sbjct: 1699 VGSAEKRAYLQARFPQLDETCFANSRDTSF---EQHVLRHTAGK----GVDLVLNSLAEE 1751

Query: 161  LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF 220
             L A +  +   GR    G     N +   G+   +  V+    +   +  +    + + 
Sbjct: 1752 KLQASVRCLAQHGRFLEIGKFDLSN-NHALGMAVFLKNVTFHGILLDSLFEEGGATWQEV 1810

Query: 221  LEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV 266
             E++   I+EG +  ++          AA   +  G+++GK V+ V
Sbjct: 1811 SELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQV 1856

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 20  FNKGDLVWGMT--GWEEYSLITAPHLFKIQHTD-------VPLSYYTGILGMPGMTAYVG 70
              GD V GM    +   ++     + +I           VP+ +         +TAY  
Sbjct: 286 LAPGDRVMGMIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVF---------LTAYYA 336

Query: 71  FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             ++   + GE + + +A+G VG    Q A+ LG  V  +A       +
Sbjct: 337 LVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQAV 385

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 80  GECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL 138
           G+ V I+ A G +G +     +  G   ++ S  +  ++   +  +  D   N  EE DL
Sbjct: 165 GKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PYA-DRLVNPLEE-DL 220

Query: 139 NAALKRYFPEGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMY 197
              ++R    G+++  E  G    +   L  +   G     G+ S      P        
Sbjct: 221 LEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPS-----DPIRFDLAGE 275

Query: 198 LVSKRLRMEGFIVLDHYHLYPKFLEMI 224
           LV + +   G      +  + +   ++
Sbjct: 276 LVMRGITAFGIAGRRLWQTWMQGTALV 302

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 29/185 (15%)

Query: 77  PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEE 135
            K G  V I    G +G L  Q A+L G   V+ S     K  L + + G     +    
Sbjct: 180 IKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAE-EVGATATVDPSAG 237

Query: 136 ADLNAALKRYF---PEGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEG 191
            D+  A+       P G+D+  E  G  + +       K  G +   G+     L + E 
Sbjct: 238 -DVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGV-----LPQGEK 291

Query: 192 VH-NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKL---------VYVEDMAE 241
           V      ++ + LR+ G     +  ++ +  ++    +  G +         + +++  +
Sbjct: 292 VEIEPFDILFRELRVLG--SFINPFVHRRAADL----VATGAIEIDRMISRRISLDEAPD 345

Query: 242 GLESA 246
            + + 
Sbjct: 346 VISNP 350

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 26/157 (16%)

Query: 64  GMTAYVGFYEVCSP-KH-----GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
           G+T Y          K      G  V IS A+G +G L  Q+AK +G  V+G  G + K 
Sbjct: 155 GITVY-------KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE 207

Query: 118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL-LDAVLPNMKIRGRIA 176
           +L +   G +   ++ +E D+  A+ +    G          +  ++A    ++  G   
Sbjct: 208 ELFR-SIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTV 266

Query: 177 ACGMISQYNLDKPEGVH---NLMYLVSKRLRMEGFIV 210
             GM        P G     ++   V K + + G  V
Sbjct: 267 LVGM--------PAGAKCCSDVFNQVVKSISIVGSYV 295

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 77  PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEE 135
               + V I  A G +G L  Q A  LG   V     S +K+ L K  FG  + FN  E 
Sbjct: 158 GCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFNSSEM 215

Query: 136 ADLNAALKRYF-PEGIDIYFENVG-GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH 193
                            +  E  G  + ++  +       ++A  G + Q   D      
Sbjct: 216 -SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQ---DLHLTSA 271

Query: 194 NLMYLVSKRLRMEG-FIVLDHYHLYPKFLEMI 224
               ++ K L + G ++         ++    
Sbjct: 272 TFGKILRKELTVIGSWMNYSSPWPGQEWETAS 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.98
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.92
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.97
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.97
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.87
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.67
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.64
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.52
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.48
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.37
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.36
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.29
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.24
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.23
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.21
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.19
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.18
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.16
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.16
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.16
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.15
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.12
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.12
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.11
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.11
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.1
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.07
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.05
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.04
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.03
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.03
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.02
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.02
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.02
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.02
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.01
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.01
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.0
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.99
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.99
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.97
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.96
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.95
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.95
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.94
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.94
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.94
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.94
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.94
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.94
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.93
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.92
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.92
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.92
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.9
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.9
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.9
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.9
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.9
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.9
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.88
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.88
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.88
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.87
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.87
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.87
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.87
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.86
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.86
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.86
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.86
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.86
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.85
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.85
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.85
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.85
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.84
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.84
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.83
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.83
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.83
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.83
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.82
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.82
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.82
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.82
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.82
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.81
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.81
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.81
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.81
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.8
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.8
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.8
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.8
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.79
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.79
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.79
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.79
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.78
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.78
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.78
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.78
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.78
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.78
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.78
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.78
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.78
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.77
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.77
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.77
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.77
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.77
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.77
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.76
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.76
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.76
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.76
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.75
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.75
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.75
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.75
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.75
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.75
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.74
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.74
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.74
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.74
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.73
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.72
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.72
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.72
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.72
1spx_A	278	Short-chain reductase family member (5L265); paral	97.72
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.71
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.71
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.71
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.7
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.7
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.7
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.69
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.68
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.68
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.68
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.68
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.67
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.67
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.67
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.67
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.67
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.67
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.66
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.65
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.65
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.65
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.65
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.64
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.63
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.63
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.63
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.62
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.62
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.62
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.62
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.62
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.62
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.61
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.6
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.6
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.59
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.59
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.59
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.58
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.57
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.57
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.56
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.55
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.55
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.55
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.55
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.54
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.54
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.54
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.53
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.53
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.53
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.52
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.52
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.51
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.5
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.5
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.49
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.49
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.49
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.49
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.49
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.48
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.47
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.47
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.46
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.46
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.46
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.46
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.45
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.45
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.45
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.44
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.43
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.43
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.43
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.42
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.42
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.42
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.42
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.42
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.41
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.4
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.4
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.39
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.39
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.39
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.39
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.37
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.36
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.35
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.35
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.34
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.34
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.34
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.34
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.32
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.3
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.29
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.28
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.27
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.27
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.26
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.26
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.25
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.25
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.24
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.23
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.21
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.18
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.18
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.18
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.17
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.17
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.15
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.14
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.11
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.11
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.11
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.1
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.08
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.07
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.07
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.06
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.05
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.05
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.04
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.04
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.03
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.02
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.02
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.01
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.01
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.01
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.01
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.99
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.99
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.98
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.98
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.98
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.98
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.96
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.95
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.93
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.91
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.91
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.9
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.9
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.89
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.89
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.89
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.88
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.88
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.88
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.87
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.87
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.87
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.87
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.87
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.86
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.85
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.84
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.82
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.82
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.82
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.82
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.81
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.8
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.79
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.79
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.79
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.79
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.78
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.78
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.77
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.76
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.75
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.75
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.75
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.75
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.74
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.74
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.72
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.72
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.72
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.69
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.69
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.69
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.66
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.64
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.64
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.64
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.62
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.62
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.62
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.62
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.62
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.61
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.61
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.6
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.6
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.59
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.58
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.56
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.56
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.54
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.53
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.53
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.52
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.52
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.51
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	96.5
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.5
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.48
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.47
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.44
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.44
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.44
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.43
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.43
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.42
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.41
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.41
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.41
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.41
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.4
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.4
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.39
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.39
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.38
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.36
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.35
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.35
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.32
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	96.32
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.32
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.31
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.31
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.31
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.31
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.31
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.31
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.3
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.29
2o07_A	304	Spermidine synthase; structural genomics, structur	96.27
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.26
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.24
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.23
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.22
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.22
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.22
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.22
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.2
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.2
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.19
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.19
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.17
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	96.17
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.17
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.16
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.15
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	96.15
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.13
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.11
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	96.11
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.11
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.1
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.09
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.09
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.07
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.07
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.07
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.07
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.06
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.06
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.04
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.03
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.01
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.0
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.99
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.97

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=6e-43  Score=289.25  Aligned_cols=256  Identities=20%  Similarity=0.246  Sum_probs=225.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--cccceeEeec-CCcceeecCCCCCchhh---hhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLIT-APHLFKIQHTDVPLSYY---TGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~-~~~~~~~~p~~~~~~~~---~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      -|++|+|+++|++|++|++||||+++  |+|+||++++ .+.++++ |++++.. +   ++++++.+.|||+++.+.+++
T Consensus        69 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~G~~aey~~v~~~~~~~~~-P~~~~~~-~~~~aa~~~~~~~ta~~~l~~~~~~  146 (334)
T 3qwb_A           69 REASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKL-PKGTSDE-ELKLYAAGLLQVLTALSFTNEAYHV  146 (334)
T ss_dssp             SEEEEEEEEECTTCCSCCTTCEEEEECSSCSBSEEEEETTSSEEEC-CTTCCHH-HHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEEeeCCcceEEEEecCcceEEEC-CCCCCHH-HhhhhhhhhhHHHHHHHHHHHhccC
Confidence            46799999999999999999999976  8999999999 9999999 9986655 3   467888999999999888899


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      +++++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++++++. ++.+.+++.+++ ++|+++||
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~~-~~~~~~~~~~~~~g~D~vid~  224 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINASKE-DILRQVLKFTNGKGVDASFDS  224 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEEeCCCc-hHHHHHHHHhCCCCceEEEEC
Confidence            99999999999999999999999999999999999999999998 9999999999887 899999998877 99999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc---ccchHHHHHHHHHHHHcCCc
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l  233 (268)
                      +|+..+..++++++++|+++.+|...+     .....+...+..+++++.++....+   +....+.++++++++.+|++
T Consensus       225 ~g~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l  299 (334)
T 3qwb_A          225 VGKDTFEISLAALKRKGVFVSFGNASG-----LIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKL  299 (334)
T ss_dssp             CGGGGHHHHHHHEEEEEEEEECCCTTC-----CCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSS
T ss_pred             CChHHHHHHHHHhccCCEEEEEcCCCC-----CCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999987542     1223445566788999888766554   22334567899999999999


Q ss_pred             eeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ++.++++|+++++++||+.+.+++..||+|+++++
T Consensus       300 ~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          300 NIKIYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             CCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             cCceeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            99999999999999999999999999999999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=3.6e-43  Score=292.42  Aligned_cols=254  Identities=21%  Similarity=0.342  Sum_probs=223.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .|++|+|+++|++|++|++||+|+++   |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.++++++
T Consensus        91 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~~-P~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g  168 (353)
T 4dup_A           91 LELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPF-PKGYDAV-KAAALPETFFTVWANLFQMAGLTEG  168 (353)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEEC-CTTCCHH-HHHTSHHHHHHHHHHHTTTTCCCTT
T ss_pred             cccEEEEEEECCCCCCCCCCCEEEEecCCCceeeEEEEcHHHcEeC-CCCCCHH-HHhhhhhHHHHHHHHHHHhcCCCCC
Confidence            45689999999999999999999987   89999999999999999 9985544 3778999999999999888899999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      ++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++++++. ++.+.+++.+++++|+++||+|+.
T Consensus       169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~-~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINYRSE-DFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEeCCch-HHHHHHHHHhCCCceEEEECCCHH
Confidence            99999999999999999999999999999999999999999 8999999999887 888888888844999999999999


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCCccc-cchHHHHhcceeeeeEEeccccc-----chHHHHHHHHHHHHcCCce
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKPEGV-HNLMYLVSKRLRMEGFIVLDHYH-----LYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~l~  234 (268)
                      .+..++++++++|+++.+|...+.     ... .+...++.+++++.++.......     ...+.++++++++.+|+++
T Consensus       247 ~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  321 (353)
T 4dup_A          247 YFERNIASLAKDGCLSIIAFLGGA-----VAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA  321 (353)
T ss_dssp             GHHHHHHTEEEEEEEEECCCTTCS-----EEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC
T ss_pred             HHHHHHHHhccCCEEEEEEecCCC-----cccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCcc
Confidence            999999999999999999875421     112 55667888999999988765421     1223478899999999999


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.++++|+++++++||+.+.+++..||+|+++
T Consensus       322 ~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          322 PVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             CCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99999999999999999999999999999975

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=6.2e-43  Score=292.06  Aligned_cols=247  Identities=25%  Similarity=0.297  Sum_probs=221.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------cccceeEeecCCcceeecCCCCCchhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------TGWEEYSLITAPHLFKIQHTDVPLSYY   56 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------g~~~~~~~v~~~~~~~~~p~~~~~~~~   56 (268)
                      -|++|+|+++|++|++|++||||++.                           |+|+||++++++.++++ |++++.. +
T Consensus        89 hE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~  166 (363)
T 3uog_A           89 SDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAA-PKSLDAA-E  166 (363)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEEC-CTTSCHH-H
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEEC-CCCCCHH-H
Confidence            56799999999999999999999875                           89999999999999999 9985554 3


Q ss_pred             hhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChh
Q 024411           57 TGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEA  136 (268)
Q Consensus        57 ~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  136 (268)
                      +|++++++.|||+++.+.++++++++|||+| +|++|++++|+|+.+|++|+++++++++.+.++ ++|+++++|.+.. 
T Consensus       167 aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-  243 (363)
T 3uog_A          167 ASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-ALGADHGINRLEE-  243 (363)
T ss_dssp             HHTTTTHHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTTS-
T ss_pred             HhhcccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-HcCCCEEEcCCcc-
Confidence            7789999999999998888999999999999 699999999999999999999999999999998 9999999995545 


Q ss_pred             hHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccccc
Q 024411          137 DLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH  215 (268)
Q Consensus       137 ~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (268)
                      ++.+.+++.+++ ++|++|||+|+..+..++++++++|+++.+|...+.     ....+...++.+++++.++....   
T Consensus       244 ~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~---  315 (363)
T 3uog_A          244 DWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGF-----EVSGPVGPLLLKSPVVQGISVGH---  315 (363)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSC-----EECCBTTHHHHTCCEEEECCCCC---
T ss_pred             cHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCc-----ccCcCHHHHHhCCcEEEEEecCC---
Confidence            888999998887 999999999998999999999999999999875431     12345567788999999987655   


Q ss_pred             chHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          216 LYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       216 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                        .+.++++++++.+|++++.++++|+|+++++||+.+.+++ .||+|+++
T Consensus       316 --~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          316 --RRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             --HHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             --HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence              6789999999999999999999999999999999999988 89999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-42  Score=288.18  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=216.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      -|++|+|+++|++++ |++||||+++   |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.++++++
T Consensus        84 ~E~~G~V~~vG~~v~-~~vGDrV~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g  160 (342)
T 4eye_A           84 IETAGVVRSAPEGSG-IKPGDRVMAFNFIGGYAERVAVAPSNILPT-PPQLDDA-EAVALIANYHTMYFAYARRGQLRAG  160 (342)
T ss_dssp             SEEEEEEEECCTTSS-CCTTCEEEEECSSCCSBSEEEECGGGEEEC-CTTSCHH-HHHHHTTHHHHHHHHHHTTSCCCTT
T ss_pred             eeEEEEEEEECCCCC-CCCCCEEEEecCCCcceEEEEEcHHHeEEC-CCCCCHH-HHHHhhhHHHHHHHHHHHhcCCCCC
Confidence            567999999999999 9999999987   89999999999999999 9885444 3779999999999999888899999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.+++++ . ++.+.+++.+++ ++|++|||+|+
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~v~~~~-~-~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVGADIVLPLE-E-GWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEESS-T-THHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEecCc-h-hHHHHHHHHhCCCCceEEEECCch
Confidence            99999999999999999999999999999999999999999 89999999998 5 899999999988 99999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc----ccchHHHHHHHHHHHHcCCcee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH----YHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      ..+..++++++++|+++.+|...+.     ....+...++.+++++.++....+    +....+.++++.+++.+| +++
T Consensus       238 ~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~  311 (342)
T 4eye_A          238 PAFDDAVRTLASEGRLLVVGFAAGG-----IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRP  311 (342)
T ss_dssp             -CHHHHHHTEEEEEEEEEC---------------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCC
T ss_pred             hHHHHHHHhhcCCCEEEEEEccCCC-----CCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCC
Confidence            9999999999999999999875432     112333456788999999876543    334457899999999999 999


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .++++|+++++++||+.+.+++..||+|+++
T Consensus       312 ~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          312 PVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             CEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999999999999999999999974

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=2.9e-42  Score=284.05  Aligned_cols=254  Identities=23%  Similarity=0.282  Sum_probs=221.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|+++|++|++|++||+|++.    |+|+||++++++.++++ |++++.. ++|++++.++|||+++.+.+++++
T Consensus        63 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~~-P~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~  140 (325)
T 3jyn_A           63 AEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKL-ADSVSFE-QAAALMLKGLTVQYLLRQTYQVKP  140 (325)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEESSSSSCCSBSEEEEEGGGEEEC-CTTSCHH-HHHHHHHHHHHHHHHHHTTSCCCT
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEEecCCCccccceEEecHHHeEEC-CCCCCHH-HHhhhhhhHHHHHHHHHHhcCCCC
Confidence            57799999999999999999999975    89999999999999999 9985554 377888999999999988889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|+++++|+++. ++.+.+++.+++ ++|+++||+|
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~~g  218 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETIDYSHE-DVAKRVLELTDGKKCPVVYDGVG  218 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTCCEEEEEESSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-cHHHHHHHHhCCCCceEEEECCC
Confidence            999999999999999999999999999999999999999999 9999999999887 899999999887 9999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhc-ceeeeeEEeccc---ccchHHHHHHHHHHHHcCCce
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSK-RLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      +..+..++++++++|+++.+|...+.     ....+...+..+ .+++.+.....+   +....+.++++++++.+|+++
T Consensus       219 ~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  293 (325)
T 3jyn_A          219 QDTWLTSLDSVAPRGLVVSFGNASGP-----VSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLK  293 (325)
T ss_dssp             GGGHHHHHTTEEEEEEEEECCCTTCC-----CCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHhcCCCEEEEEecCCCC-----CCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCee
Confidence            99999999999999999999975431     123444555555 556655443332   334556778999999999999


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.++++|+++++++||+.+.+++..||+|+.+
T Consensus       294 ~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          294 VDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             CCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             CccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            99889999999999999999999999999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=8.6e-42  Score=282.63  Aligned_cols=256  Identities=45%  Similarity=0.755  Sum_probs=222.1

Q ss_pred             cceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeecCCCCCchhh-hhhccchHHHHHHHhhhhcCCCCCcEEE
Q 024411            6 GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYY-TGILGMPGMTAYVGFYEVCSPKHGECVF   84 (268)
Q Consensus         6 ~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~~~~-~a~l~~~~~~a~~~l~~~~~~~~~~~vl   84 (268)
                      ++|+|++  +++++|++||||++.|+|+||++++++.++++ |++++.... +++++++++|||+++.+.++++++++||
T Consensus        78 ~~G~V~~--~~v~~~~vGdrV~~~G~~aey~~v~~~~~~~~-P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vl  154 (336)
T 4b7c_A           78 GVGKVLV--SKHPGFQAGDYVNGALGVQDYFIGEPKGFYKV-DPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVV  154 (336)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEECCSBSEEEECCTTCEEE-CTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEE
T ss_pred             eEEEEEe--cCCCCCCCCCEEeccCCceEEEEechHHeEEc-CCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEE
Confidence            4666666  56899999999999999999999999999999 887533322 2789999999999998888999999999


Q ss_pred             EecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhhHH
Q 024411           85 ISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL-KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLD  163 (268)
Q Consensus        85 I~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  163 (268)
                      |+|++|++|++++|+++..|++|+++++++++.+.+ + ++|+++++|+++. ++.+.+.+.+++++|+++||+|+..+.
T Consensus       155 I~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~  232 (336)
T 4b7c_A          155 ISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE-ELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILD  232 (336)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCCSEEEETTTS-CHHHHHHHHCTTCEEEEEESSCHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HcCCCEEEECCCH-HHHHHHHHhcCCCceEEEECCCcchHH
Confidence            999999999999999999999999999999999999 6 9999999999887 899999998866999999999999999


Q ss_pred             hHHHhhhcCCEEEEEcccccccC-CCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcc
Q 024411          164 AVLPNMKIRGRIAACGMISQYNL-DKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEG  242 (268)
Q Consensus       164 ~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  242 (268)
                      .++++++++|+++.+|...+... .......+...++.+++++.++....+.....+.++++++++.+|++++.+..+++
T Consensus       233 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~  312 (336)
T 4b7c_A          233 TVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEG  312 (336)
T ss_dssp             HHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEEC
T ss_pred             HHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceeeecC
Confidence            99999999999999998653211 11112345567788999999988776655567889999999999999998888899


Q ss_pred             cccHHHHHHHHHcCCccceEEEEe
Q 024411          243 LESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       243 ~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++++++||+.+.+++..||+|+++
T Consensus       313 l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          313 LETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             GGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999999999999999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=9e-42  Score=283.35  Aligned_cols=252  Identities=25%  Similarity=0.303  Sum_probs=215.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .|++|+|+++|++|++|++||+|+++      |+|+||++++++.++++ |++++.. ++|++++++.|||+++...+++
T Consensus        65 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~~~~~~~ta~~~l~~~~~~  142 (346)
T 3fbg_A           65 FDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKA-PKNISAE-QAVSLPLTGITAYETLFDVFGI  142 (346)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEEC-CSSSCHH-HHTTSHHHHHHHHHHHHTTSCC
T ss_pred             CccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEEC-CCCCCHH-HhhhcchhHHHHHHHHHHhcCC
Confidence            56799999999999999999999985      89999999999999999 9985554 3778899999999999888888


Q ss_pred             C------CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 K------HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~------~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +      ++++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|+++++++++  ++.+.+++..++++|
T Consensus       143 ~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~--~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          143 SRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGADIVLNHKE--SLLNQFKTQGIELVD  219 (346)
T ss_dssp             CSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HHTCSEEECTTS--CHHHHHHHHTCCCEE
T ss_pred             ccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEECCc--cHHHHHHHhCCCCcc
Confidence            8      9999999988899999999999999999999999999999999 899999999875  678888887444999


Q ss_pred             EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-------ccchHHHHHH
Q 024411          152 IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-------YHLYPKFLEM  223 (268)
Q Consensus       152 ~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  223 (268)
                      ++|||+|+ ..+..++++++++|+++.++...        ...+...+..+++++.++.....       .....+.+++
T Consensus       220 vv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (346)
T 3fbg_A          220 YVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--------NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLED  291 (346)
T ss_dssp             EEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--------SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHhccCCEEEEECCCC--------CCCccccccccceEEEEEEEecccccchhhHHHHHHHHHH
Confidence            99999998 56799999999999999886521        12334455678888887654321       1223577899


Q ss_pred             HHHHHHcCCceeeeehhc---ccccHHHHHHHHHcCCccceEEEEecC
Q 024411          224 IIPHIKEGKLVYVEDMAE---GLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       224 ~~~~~~~g~l~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      +++++.+|++++.++++|   +++++++||+.+.+++..||+|+++++
T Consensus       292 ~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          292 ITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             HHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            999999999999988777   899999999999999999999998864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.5e-41  Score=280.04  Aligned_cols=252  Identities=24%  Similarity=0.365  Sum_probs=218.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|+++|++|++|++||||++.    |+|+||++++++.++++ |++++.. ++|++++++.|||+++.+.+++++
T Consensus        93 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~-P~~l~~~-~aA~l~~~~~ta~~al~~~~~~~~  170 (351)
T 1yb5_A           93 SDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKL-PEKLDFK-QGAAIGIPYFTAYRALIHSACVKA  170 (351)
T ss_dssp             SCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEEC-CTTSCHH-HHTTTHHHHHHHHHHHHTTSCCCT
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEEeCCCCCcceeEEEECHHHeEEC-CCCCCHH-HHHhhhhHHHHHHHHHHHhhCCCC
Confidence            47799999999999999999999986    89999999999999999 9985544 377899999999999987889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+++. ++.+.+.+.+++ ++|+++||+|
T Consensus       171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~d~~~~-~~~~~~~~~~~~~~~D~vi~~~G  248 (351)
T 1yb5_A          171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHREV-NYIDKIKKYVGEKGIDIIIEMLA  248 (351)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTST-THHHHHHHHHCTTCEEEEEESCH
T ss_pred             cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH-HcCCCEEEeCCCc-hHHHHHHHHcCCCCcEEEEECCC
Confidence            999999999999999999999999999999999999999888 9999989998876 888888887766 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCceeee
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLVYVE  237 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~  237 (268)
                      +..+..++++++++|+++.+|...       ....+...++.+++++.++..... .....+.++.+.+++.+|++++.+
T Consensus       249 ~~~~~~~~~~l~~~G~iv~~g~~~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i  321 (351)
T 1yb5_A          249 NVNLSKDLSLLSHGGRVIVVGSRG-------TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVI  321 (351)
T ss_dssp             HHHHHHHHHHEEEEEEEEECCCCS-------CEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             hHHHHHHHHhccCCCEEEEEecCC-------CCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCcc
Confidence            988899999999999999998632       122345567788999988765332 233456677788889999999999


Q ss_pred             ehhcccccHHHHHHH-HHcCCccceEEEEe
Q 024411          238 DMAEGLESAPAALIG-LFSGQNVGKQVVAV  266 (268)
Q Consensus       238 ~~~~~~~~~~~a~~~-~~~~~~~gkvvi~~  266 (268)
                      +++|+|+++++|++. +++++..||+|+++
T Consensus       322 ~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          322 GSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             EEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            999999999999998 66667789999874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.6e-41  Score=281.28  Aligned_cols=256  Identities=22%  Similarity=0.325  Sum_probs=218.5

Q ss_pred             CccceEEEEecCCC-CCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSEN-PEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v-~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|+++|++| ++|++||+|+++   |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.+++++
T Consensus        85 ~E~~G~V~~vG~~v~~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~i-P~~ls~~-~aa~l~~~~~tA~~al~~~~~~~~  162 (354)
T 2j8z_A           85 LEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPI-PEGLTLT-QAAAIPEAWLTAFQLLHLVGNVQA  162 (354)
T ss_dssp             SEEEEEEEEECSCC--CCCTTCEEEEECSSCCSBSEEEEEGGGEEEC-CTTCCHH-HHTTSHHHHHHHHHHHTTTSCCCT
T ss_pred             eeeEEEEEEECCCcCCCCCCCCEEEEecCCCcceeEEEeCHHHcEEC-CCCCCHH-HHHhccchHHHHHHHHHHhcCCCC
Confidence            46789999999999 999999999987   89999999999999999 9985444 377899999999999988889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+++. ++.+.+.+.+++ ++|+++||+|
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCCh-HHHHHHHHHhcCCCceEEEECCC
Confidence            999999999999999999999999999999999999999997 9999989998876 888888888876 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccch-HHHHhcceeeeeEEecccccc-----hHHHHHHHHHHHHcC-
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL-MYLVSKRLRMEGFIVLDHYHL-----YPKFLEMIIPHIKEG-  231 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g-  231 (268)
                      +..+..++++++++|+++.+|...+.     ....+. ..++.+++++.++........     ..+..+++++++.+| 
T Consensus       241 ~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  315 (354)
T 2j8z_A          241 GSYWEKNVNCLALDGRWVLYGLMGGG-----DINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEG  315 (354)
T ss_dssp             GGGHHHHHHHEEEEEEEEECCCTTCS-----CCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC--
T ss_pred             chHHHHHHHhccCCCEEEEEeccCCC-----ccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCC
Confidence            98899999999999999999875421     123445 567789999998766443211     122345688899999 


Q ss_pred             --CceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          232 --KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       232 --~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                        ++++.++++|+|+++++||+.+.+++..||+|+++++
T Consensus       316 ~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          316 PQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ  354 (354)
T ss_dssp             -CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             CccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence              9999999999999999999999988888999998753

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=3.3e-41  Score=289.43  Aligned_cols=251  Identities=21%  Similarity=0.215  Sum_probs=218.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .|++|+|+++|++|++|++||+|++                              .|+|+||++++.+.++++ |++++.
T Consensus       123 hE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~-P~~l~~  201 (456)
T 3krt_A          123 SDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPK-PDHLSW  201 (456)
T ss_dssp             SCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEEC-CTTSCH
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeEC-CCCCCH
Confidence            5678999999999999999999987                              289999999999999999 998555


Q ss_pred             hhhhhhccchHHHHHHHhhhh--cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           54 SYYTGILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~--~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      . ++|+++++++|||+++...  ++++++++|||+|++|++|++++|+|+..|++|+++++++++.+.++ ++|++.+++
T Consensus       202 ~-~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~-~lGa~~vi~  279 (456)
T 3krt_A          202 E-EAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AMGAEAIID  279 (456)
T ss_dssp             H-HHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCCEEEE
T ss_pred             H-HHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-hhCCcEEEe
Confidence            4 3677888999999999754  78999999999999999999999999999999999999999999998 999999998


Q ss_pred             cCCh----------------hhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccc
Q 024411          132 YKEE----------------ADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN  194 (268)
Q Consensus       132 ~~~~----------------~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  194 (268)
                      +.+.                ..+.+.+++.+++ ++|++|||+|+..+..++++++++|+++.+|...+     .....+
T Consensus       280 ~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~  354 (456)
T 3krt_A          280 RNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSG-----YMHEYD  354 (456)
T ss_dssp             TTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTC-----SEEEEE
T ss_pred             cCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCC-----cccccC
Confidence            8763                0234788888877 99999999999999999999999999999987542     222345


Q ss_pred             hHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          195 LMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ...++.+.+++.|+...+     .+.+.++++++.+|++++.++++|+|+++++|++.+.+++..||+|+.+.
T Consensus       355 ~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          355 NRYLWMSLKRIIGSHFAN-----YREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             HHHHHHTTCEEEECCSCC-----HHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred             HHHHHhcCeEEEEeccCC-----HHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            667778888888877655     44566789999999999999999999999999999999999999998763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.5e-41  Score=277.91  Aligned_cols=256  Identities=22%  Similarity=0.289  Sum_probs=220.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhh--hhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYY--TGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~--~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      -|++|+|+++|++|++|++||||++.    |+|+||++++++.++++ |++++.. +  +|+++++++|||+++.+.+++
T Consensus        66 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~~~aa~l~~~~~ta~~~l~~~~~~  143 (333)
T 1wly_A           66 FEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKV-PKDLDLD-DVHLAGLMLKGMTAQYLLHQTHKV  143 (333)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSSCCCSBSEEEEEGGGCEEC-CTTCCCC-HHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEEecCCCCcceeEEEecHHHcEeC-CCCCChH-HhCccchhhhHHHHHHHHHHhhCC
Confidence            47799999999999999999999773    89999999999999999 9986655 4  688999999999999878899


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~  156 (268)
                      +++++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+++. ++.+.+.+.+.+ ++|+++||
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~g~~~~~d~~~~-~~~~~i~~~~~~~~~d~vi~~  221 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDS  221 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEECCCH-HHHHHHHHHhCCCCCeEEEEC
Confidence            99999999999999999999999999999999999999999998 8999988998876 788888877765 89999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchH-HHHhcc--eeeeeEEeccc--ccchHHHHHHHHHHHHcC
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLM-YLVSKR--LRMEGFIVLDH--YHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g  231 (268)
                      +|+..+..++++++++|+++.+|...+.     ....+.. .++.++  +++.|+....+  +....+.++++++++.+|
T Consensus       222 ~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g  296 (333)
T 1wly_A          222 IGKDTLQKSLDCLRPRGMCAAYGHASGV-----ADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAG  296 (333)
T ss_dssp             SCTTTHHHHHHTEEEEEEEEECCCTTCC-----CCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHhhccCCEEEEEecCCCC-----cCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCC
Confidence            9998899999999999999999875421     1223444 566788  88888644211  112245789999999999


Q ss_pred             CceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       232 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ++++.++++|+|+++++||+.+.+++..||+|+++++
T Consensus       297 ~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          297 VLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             SCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             CcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            9999999999999999999999998888999998764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.4e-40  Score=275.65  Aligned_cols=246  Identities=21%  Similarity=0.265  Sum_probs=216.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEE-e------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVW-G------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~-~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||. .                              .|+|+||++++++.++++ |++++
T Consensus        63 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~  141 (340)
T 3s2e_A           63 HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLL-PDKVG  141 (340)
T ss_dssp             SEEEEEEEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEEC-CTTSC
T ss_pred             CcceEEEEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEEC-CCCCC
Confidence            567999999999999999999994 1                              189999999999999999 99855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. ++|++++++.|||+++ ...+++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ ++|+++++|+
T Consensus       142 ~~-~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~i~~  217 (340)
T 3s2e_A          142 FV-EIAPILCAGVTVYKGL-KVTDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RLGAEVAVNA  217 (340)
T ss_dssp             HH-HHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEET
T ss_pred             HH-HhhcccchhHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCCEEEeC
Confidence            54 3788999999999999 5678999999999997 99999999999999999999999999999999 9999999999


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      ++. ++.+.+++. .+++|+++|++|. ..+..++++++++|+++.+|...      .....+...++.+++++.++...
T Consensus       218 ~~~-~~~~~~~~~-~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~~~~~i~g~~~~  289 (340)
T 3s2e_A          218 RDT-DPAAWLQKE-IGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP------GDFGTPIFDVVLKGITIRGSIVG  289 (340)
T ss_dssp             TTS-CHHHHHHHH-HSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS------SEEEEEHHHHHHTTCEEEECCSC
T ss_pred             CCc-CHHHHHHHh-CCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC------CCCCCCHHHHHhCCeEEEEEecC
Confidence            886 888888873 3489999999986 78999999999999999998743      12345567778899999987765


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      +     .+.++++++++.+|++++.+. .++|+++++||+.+++++..||+|+++++
T Consensus       290 ~-----~~~~~~~~~l~~~g~l~~~~~-~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          290 T-----RSDLQESLDFAAHGDVKATVS-TAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             C-----HHHHHHHHHHHHTTSCCCCEE-EECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             C-----HHHHHHHHHHHHhCCCCceEE-EEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            5     678999999999999998754 67999999999999999999999999874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-40  Score=276.67  Aligned_cols=242  Identities=19%  Similarity=0.251  Sum_probs=212.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|++|++||||+++                              |+|+||++++++.++++ |++++.
T Consensus        79 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~i-P~~~~~  157 (359)
T 1h2b_A           79 HENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL-PKDISR  157 (359)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC-CTTCCH
T ss_pred             cCceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEEC-CCCCCH
Confidence            47799999999999999999999753                              78999999999999999 998555


Q ss_pred             hhhhh---hccchHHHHHHHhhhh-cCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCe
Q 024411           54 SYYTG---ILGMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDE  128 (268)
Q Consensus        54 ~~~~a---~l~~~~~~a~~~l~~~-~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~  128 (268)
                      . ++|   ++++++.|||+++... ++++++++|||+|+ |++|++++|+|+.+ |++|+++++++++.+.++ ++|+++
T Consensus       158 ~-~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~  234 (359)
T 1h2b_A          158 E-KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADH  234 (359)
T ss_dssp             H-HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSE
T ss_pred             H-HHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCE
Confidence            4 355   7888999999999775 78999999999999 99999999999999 999999999999999999 999999


Q ss_pred             eeecCChhhHHHHHHHHCCC-CccEEEeCCChh---hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhccee
Q 024411          129 AFNYKEEADLNAALKRYFPE-GIDIYFENVGGK---LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR  204 (268)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (268)
                      ++|+++  .+.+.+++.+++ ++|++||++|+.   .+..++++  ++|+++.+|...+     +  ..+...++.++++
T Consensus       235 vi~~~~--~~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~-----~--~~~~~~~~~~~~~  303 (359)
T 1h2b_A          235 VVDARR--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGE-----L--RFPTIRVISSEVS  303 (359)
T ss_dssp             EEETTS--CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSC-----C--CCCHHHHHHTTCE
T ss_pred             EEeccc--hHHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCC-----C--CCCHHHHHhCCcE
Confidence            999886  367778888877 899999999985   78888888  9999999987431     1  3455667789999


Q ss_pred             eeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          205 MEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.++....     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       304 i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          304 FEGSLVGN-----YVELHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             EEECCSCC-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             EEEecCCC-----HHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            99876543     67899999999999999988 8999999999999999988889999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=5e-41  Score=278.33  Aligned_cols=253  Identities=16%  Similarity=0.232  Sum_probs=214.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .|++|+|+++|++|++|++||+|+++   |+|+||++++++.++++ |++++.. ++|++++.++|||+++.+.++++++
T Consensus        68 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G~~aey~~v~~~~~~~v-P~~l~~~-~aa~l~~~~~ta~~~~~~~~~~~~g  145 (340)
T 3gms_A           68 YEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPI-PDSIDDF-TAAQMYINPLTAWVTCTETLNLQRN  145 (340)
T ss_dssp             SCCEEEEEEECTTSCGGGTTCEEEECSSSCSSBSEEEEEGGGEEEC-CTTSCHH-HHTTSSHHHHHHHHHHHTTSCCCTT
T ss_pred             cceEEEEEEeCCCCCCCCCCCEEEecCCCccceeEEEcCHHHeEEC-CCCCCHH-HHhhhcchHHHHHHHHHHhcccCCC
Confidence            57899999999999999999999987   89999999999999999 9985544 3778899999999999888999999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|+++++|+++. ++.+.+++.+++ ++|++|||+|+
T Consensus       146 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lga~~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLGAAYVIDTSTA-PLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hCCCcEEEeCCcc-cHHHHHHHHhCCCCCcEEEECCCC
Confidence            99999999889999999999999999999999999999999 8999999999887 899999999887 99999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHH-hcceeeeeEEeccc-----ccchHHHHHHHHHHHHcCCc
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLV-SKRLRMEGFIVLDH-----YHLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~l  233 (268)
                      ......+++++++|+++.+|...+.       ..++..+. ...+.+..+....+     .....+.++++++++.+|++
T Consensus       224 ~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l  296 (340)
T 3gms_A          224 PDGNELAFSLRPNGHFLTIGLLSGI-------QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQL  296 (340)
T ss_dssp             HHHHHHHHTEEEEEEEEECCCTTSC-------CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSS
T ss_pred             hhHHHHHHHhcCCCEEEEEeecCCC-------CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCC
Confidence            7777788999999999999975431       12222222 23344433332221     22345789999999999999


Q ss_pred             ee-eeehhcccccHHHHHHHHHcCCc-cceEEEEec
Q 024411          234 VY-VEDMAEGLESAPAALIGLFSGQN-VGKQVVAVA  267 (268)
Q Consensus       234 ~~-~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~~  267 (268)
                      ++ .++++|+++++++||+.+.+++. .||+++++.
T Consensus       297 ~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~  332 (340)
T 3gms_A          297 RFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSY  332 (340)
T ss_dssp             CCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC
T ss_pred             ccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            87 57889999999999999999874 599999875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-41  Score=277.82  Aligned_cols=249  Identities=27%  Similarity=0.351  Sum_probs=218.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEE-------e--------------------c---cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVW-------G--------------------M---TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~-------~--------------------~---g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|++|++||||+       +                    +   |+|+||++++++.++++ |++++.
T Consensus        63 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~-P~~~~~  141 (343)
T 2eih_A           63 ADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPK-PKNLSF  141 (343)
T ss_dssp             SEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEEC-CTTSCH
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEEC-CCCCCH
Confidence            467999999999999999999999       5                    3   89999999999999999 998544


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      . ++|++++++.|||+++...++++++++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|++
T Consensus       142 ~-~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~ga~~~~d~~  219 (343)
T 2eih_A          142 E-EAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYT  219 (343)
T ss_dssp             H-HHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             H-HHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEcCC
Confidence            4 367799999999999977678999999999999999999999999999999999999999999998 89999889988


Q ss_pred             ChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          134 EEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      +. ++.+.+++.+++ ++|+++|++|+..+..++++++++|+++.+|...+.     ....+...++.+++++.|+....
T Consensus       220 ~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~  293 (343)
T 2eih_A          220 HP-DWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-----EGTLPFAHVFYRQLSILGSTMAS  293 (343)
T ss_dssp             ST-THHHHHHHHTTTTCEEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSC-----CCCCCTTHHHHTTCEEEECCSCC
T ss_pred             cc-cHHHHHHHHhCCCCceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCC-----cCccCHHHHHhCCcEEEEecCcc
Confidence            76 788888888866 899999999988899999999999999999875421     11234456778999998865332


Q ss_pred             cccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                           .+.++++++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       294 -----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          294 -----KSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             -----GGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             -----HHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence                 5678999999999999999999999999999999999988889999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.8e-40  Score=275.74  Aligned_cols=263  Identities=70%  Similarity=1.206  Sum_probs=220.9

Q ss_pred             ccceEEEE--ecCCCCCCCCCCeEEeccccceeEeecCCc--ceeecCC-CCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            5 SGYGVAKV--LDSENPEFNKGDLVWGMTGWEEYSLITAPH--LFKIQHT-DVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         5 ~~~G~v~~--vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~--~~~~~p~-~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      |..|++.+  ||+++++|++||||+++|+|+||++++++.  ++++ |+ ++++++++|+++++++|||+++.+.+++++
T Consensus        77 e~~G~~~~GvV~~~v~~~~vGdrV~~~g~~aey~~v~~~~~~~~~i-p~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~  155 (345)
T 2j3h_A           77 PIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKI-QHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKE  155 (345)
T ss_dssp             BCEEEEEEEEEEECSTTCCTTCEEEEEEESBSEEEECCCTTTCEEE-CCCSSCTTGGGTTTSHHHHHHHHHHHTTSCCCT
T ss_pred             eeecceEEEEEecCCCCCCCCCEEEeecCceeEEEecccccceeec-CCCCCCHHHHHHhccccHHHHHHHHHHHhCCCC
Confidence            34677777  999999999999999999999999999887  9999 64 455665678899999999999988889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++|||+|++|++|++++|+++..|++|+++++++++.+.+++++|++.++|+.+.+++.+.+++.+++++|+++|++|+
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  235 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGG  235 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCH
Confidence            99999999999999999999999999999999999999988746899888887652266777777765589999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeeh
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM  239 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  239 (268)
                      ..+..++++++++|+++.+|...+..........+...++.+++++.++....+.....+.++++++++.+|++++.+..
T Consensus       236 ~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~  315 (345)
T 2j3h_A          236 KMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV  315 (345)
T ss_dssp             HHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccc
Confidence            88999999999999999998765321111112334556778899998876654434456779999999999999988887


Q ss_pred             hcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          240 AEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       240 ~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      +|+|+++++||+.+.+++..||+|+.+++
T Consensus       316 ~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          316 ADGLEKAPEALVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             EESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred             cCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            89999999999999999889999998853

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.7e-40  Score=276.24  Aligned_cols=247  Identities=21%  Similarity=0.259  Sum_probs=217.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||+..                               |+|+||+.++++.++++ |++++
T Consensus        60 hE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~i-P~~~~  138 (348)
T 4eez_A           60 HEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKV-PDGLD  138 (348)
T ss_dssp             SEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBC-CTTSC
T ss_pred             eeEEEEEEEECceeeecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeec-CCCCC
Confidence            46789999999999999999999642                               78999999999999999 99854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. +++++++++.|||+++. .+.++++++|||+|+ |++|.+++|+++.. |++|+++++++++.+.++ ++|+++++|
T Consensus       139 ~~-~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~Ga~~~i~  214 (348)
T 4eez_A          139 PI-EASSITCAGVTTYKAIK-VSGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KIGADVTIN  214 (348)
T ss_dssp             HH-HHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HTTCSEEEE
T ss_pred             HH-HHhhcccceeeEEeeec-ccCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hcCCeEEEe
Confidence            44 48899999999999994 568999999999998 99999999999876 669999999999999999 999999999


Q ss_pred             cCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +++. ++.+.+++.+++ ++|.+++++++ ..+..++++++++|+++.+|...      .....+...++.+++++.|+.
T Consensus       215 ~~~~-~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~------~~~~~~~~~~~~~~~~i~gs~  287 (348)
T 4eez_A          215 SGDV-NPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPN------TEMTLSVPTVVFDGVEVAGSL  287 (348)
T ss_dssp             C-CC-CHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCS------CEEEECHHHHHHSCCEEEECC
T ss_pred             CCCC-CHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccC------CCCccCHHHHHhCCeEEEEEe
Confidence            9987 899999999988 99999999987 78899999999999999998743      223456677888999999877


Q ss_pred             ecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      .++     .+.++++++++++|++++.+ ++|+|+++++||+.+++++..||+||+|++
T Consensus       288 ~~~-----~~~~~~~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          288 VGT-----RLDLAEAFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             SCC-----HHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             cCC-----HHHHHHHHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence            655     67789999999999999866 689999999999999999999999999864

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.1e-40  Score=285.97  Aligned_cols=250  Identities=22%  Similarity=0.204  Sum_probs=216.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|++|++||+|++                              .|+|+||++++++.++++ |++++.
T Consensus       115 hE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~i-P~~ls~  193 (447)
T 4a0s_A          115 SDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPK-PAHLTW  193 (447)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEEC-CTTSCH
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEEC-CCCCCH
Confidence            4678999999999999999999986                              389999999999999999 998555


Q ss_pred             hhhhhhccchHHHHHHHhhhh--cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           54 SYYTGILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~--~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      . ++|+++++++|||+++...  ++++++++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++++++
T Consensus       194 ~-~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i~  271 (447)
T 4a0s_A          194 E-EAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-ALGCDLVIN  271 (447)
T ss_dssp             H-HHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCCCEEE
T ss_pred             H-HHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEe
Confidence            4 3777888999999999643  78999999999999999999999999999999999999999999998 999998888


Q ss_pred             cCChhh------------------HHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCcccc
Q 024411          132 YKEEAD------------------LNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH  193 (268)
Q Consensus       132 ~~~~~~------------------~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  193 (268)
                      +.+. +                  +.+.+++.+++++|++||++|...+..++++++++|+++.+|...+     .....
T Consensus       272 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~  345 (447)
T 4a0s_A          272 RAEL-GITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSG-----YLHTF  345 (447)
T ss_dssp             HHHH-TCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTC-----SEEEE
T ss_pred             cccc-cccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCC-----ccccc
Confidence            7543 2                  3677777774489999999999889999999999999999987542     22234


Q ss_pred             chHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          194 NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +...++.+++++.|+...+     .+.+.++++++.+|++++.++++|+|+++++||+.+.+++..||+|+.+.
T Consensus       346 ~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          346 DNRYLWMKLKKIVGSHGAN-----HEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             EHHHHHHTTCEEEECCSCC-----HHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred             CHHHHHhCCCEEEecCCCC-----HHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            5667778888888876655     45677899999999999999999999999999999999999999999863

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=8.5e-41  Score=277.08  Aligned_cols=248  Identities=20%  Similarity=0.321  Sum_probs=215.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec--------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM--------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~--------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      -|++|+|+++|++|++|++||+|+++        |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.+
T Consensus        69 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~-P~~~~~~-~aa~l~~~~~ta~~~l~~~~  146 (343)
T 3gaz_A           69 MDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASK-PAALTMR-QASVLPLVFITAWEGLVDRA  146 (343)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEEC-CTTSCHH-HHHTSHHHHHHHHHHHTTTT
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeC-CCCCCHH-HHHHhhhhHHHHHHHHHHhc
Confidence            56789999999999999999999876        79999999999999999 9885554 37788999999999998888


Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                      +++++++|||+||+|++|++++|+++..|++|+++ .++++.+.++ ++|++. ++ +.. ++.+.+++.+++ ++|++|
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~-~lGa~~-i~-~~~-~~~~~~~~~~~~~g~D~vi  221 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVR-DLGATP-ID-ASR-EPEDYAAEHTAGQGFDLVY  221 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHH-HHTSEE-EE-TTS-CHHHHHHHHHTTSCEEEEE
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHH-HcCCCE-ec-cCC-CHHHHHHHHhcCCCceEEE
Confidence            99999999999988999999999999999999999 7899999998 999987 77 554 788888888877 999999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc------ccchHHHHHHHHHHH
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH------YHLYPKFLEMIIPHI  228 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  228 (268)
                      ||+|++.+..++++++++|+++.+|...         ..+...+..+++++.++.....      +....+.++++++++
T Consensus       222 d~~g~~~~~~~~~~l~~~G~iv~~g~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (343)
T 3gaz_A          222 DTLGGPVLDASFSAVKRFGHVVSCLGWG---------THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALV  292 (343)
T ss_dssp             ESSCTHHHHHHHHHEEEEEEEEESCCCS---------CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCCeEEEEcccC---------ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999998743         1234566788999888654221      123457899999999


Q ss_pred             HcCCceeeee-hhcccccHHHHHHHHHcCC----ccceEEEEec
Q 024411          229 KEGKLVYVED-MAEGLESAPAALIGLFSGQ----NVGKQVVAVA  267 (268)
Q Consensus       229 ~~g~l~~~~~-~~~~~~~~~~a~~~~~~~~----~~gkvvi~~~  267 (268)
                      .+|++++.++ ++|+|+++++||+.+.+++    ..||+|+++.
T Consensus       293 ~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          293 QTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             HTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred             HCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence            9999999998 6999999999999999865    4789999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=9.8e-41  Score=278.53  Aligned_cols=250  Identities=16%  Similarity=0.203  Sum_probs=214.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      .|++|+|+++|++|++|++||+|+++      |+|+||++++++.++++ |++++.. ++|+++++++|||+++...+++
T Consensus        87 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al~~~~~~  164 (363)
T 4dvj_A           87 YDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRK-PKTLDWA-EAAALPLTSITAWEAFFDRLDV  164 (363)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEEC-CTTSCHH-HHHTSHHHHHHHHHHHHTTSCT
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeEC-CCCCCHH-HHHhhhhHHHHHHHHHHHhhCc
Confidence            57799999999999999999999985      79999999999999999 9985554 3778888999999999888888


Q ss_pred             C-----CCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           78 K-----HGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~-----~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +     ++++|||+||+|++|++++|+|+. .|++|+++++++++.+.++ ++|+++++++.+  ++.+.+++..++++|
T Consensus       165 ~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~lGad~vi~~~~--~~~~~v~~~~~~g~D  241 (363)
T 4dvj_A          165 NKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SLGAHHVIDHSK--PLAAEVAALGLGAPA  241 (363)
T ss_dssp             TSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HTTCSEEECTTS--CHHHHHHTTCSCCEE
T ss_pred             CcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC--CHHHHHHHhcCCCce
Confidence            8     899999999889999999999998 4889999999999999999 999999999875  678888887545999


Q ss_pred             EEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-------ccchHHHHHH
Q 024411          152 IYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-------YHLYPKFLEM  223 (268)
Q Consensus       152 ~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  223 (268)
                      ++|||+|+ ..+..++++++++|+++.+|...         ..+...+..+++++.++.....       .....+.+++
T Consensus       242 vvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~---------~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  312 (363)
T 4dvj_A          242 FVFSTTHTDKHAAEIADLIAPQGRFCLIDDPS---------AFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLND  312 (363)
T ss_dssp             EEEECSCHHHHHHHHHHHSCTTCEEEECSCCS---------SCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHhcCCCEEEEECCCC---------ccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHH
Confidence            99999998 58899999999999999986421         2334456678888877554321       1122577899


Q ss_pred             HHHHHHcCCceeeeehhc---ccccHHHHHHHHHcCCccceEEEEec
Q 024411          224 IIPHIKEGKLVYVEDMAE---GLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       224 ~~~~~~~g~l~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +++++.+|++++.+..++   +++++++||+.+.+++..||+|+++.
T Consensus       313 ~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          313 VSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             HHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             HHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            999999999999887765   89999999999999999999999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=4.3e-40  Score=274.66  Aligned_cols=258  Identities=29%  Similarity=0.468  Sum_probs=221.3

Q ss_pred             CccceEEEEecCCCC-CCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENP-EFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~-~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      -|++|+|+++|++|+ +|++||||+++  |+|+||++++++.++++ |++  .. ++|+++++++|||+++.+.++++++
T Consensus        89 ~E~~G~V~~vG~~V~~~~~vGdrV~~~~~G~~aey~~v~~~~~~~~-P~~--~~-~aaal~~~~~ta~~al~~~~~~~~g  164 (362)
T 2c0c_A           89 FEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIATPV-PSV--KP-EYLTLLVSGTTAYISLKELGGLSEG  164 (362)
T ss_dssp             SEEEEEEEEECTTGGGTCCTTCEEEEECSCCSBSEEEEEGGGCEEC-SSS--CH-HHHTTTTHHHHHHHHHHHHTCCCTT
T ss_pred             ceeEEEEEEECCCccCCCCCCCEEEEccCCcceeEEEEcHHHeEEC-CCC--ch-HhhcccchHHHHHHHHHHhcCCCCC
Confidence            477999999999999 99999999986  99999999999999999 875  33 5788999999999999888899999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      ++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++++++. ++.+.+++.+++++|++|||+|+.
T Consensus       165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~-~~~~~~~~~~~~g~D~vid~~g~~  242 (362)
T 2c0c_A          165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGA  242 (362)
T ss_dssp             CEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTTS-CHHHHHHHHCTTCEEEEEECSCTH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HcCCcEEEecCCh-hHHHHHHHhcCCCCCEEEECCCHH
Confidence            99999999999999999999999999999999999999998 8999999998876 788888887755899999999998


Q ss_pred             hHHhHHHhhhcCCEEEEEcccccccCCCC--c---cccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee
Q 024411          161 LLDAVLPNMKIRGRIAACGMISQYNLDKP--E---GVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      .+..++++++++|+++.+|...+......  .   ... ...++.+++++.|+....+.....+.++++++++++|++++
T Consensus       243 ~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~  321 (362)
T 2c0c_A          243 MFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVC  321 (362)
T ss_dssp             HHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEe
Confidence            89999999999999999997654211000  0   011 25667889999987765544445678999999999999998


Q ss_pred             eee--------hhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          236 VED--------MAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       236 ~~~--------~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      .+.        ..++|+++++|++.+.+++..||+|+++++
T Consensus       322 ~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          322 EVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             CEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             eeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence            765        457999999999999998888999998864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-40  Score=273.32  Aligned_cols=254  Identities=22%  Similarity=0.215  Sum_probs=217.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      -|++|+|+++|++|++|++||||...    |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.+++++
T Consensus        63 ~E~~G~V~~vG~~v~~~~~GdrV~~~g~~~G~~aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~al~~~~~~~~  140 (327)
T 1qor_A           63 TEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAIL-PAAISFE-QAAASFLKGLTVYYLLRKTYEIKP  140 (327)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEESCCSSCCSBSEEEEEGGGEEEC-CTTSCHH-HHHHHHHHHHHHHHHHHTTSCCCT
T ss_pred             ceeEEEEEEECCCCCCCCCCCEEEECCCCCceeeeEEEecHHHcEEC-CCCCCHH-HHHHhhhHHHHHHHHHHHhhCCCC
Confidence            57799999999999999999999544    89999999999999999 9985444 367899999999999987889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      +++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++++++. ++.+.+.+.+.+ ++|+++||+|
T Consensus       141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~D~vi~~~g  218 (327)
T 1qor_A          141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVG  218 (327)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEECCCc-cHHHHHHHHhCCCCceEEEECCc
Confidence            999999999999999999999999999999999999999998 8999988998876 788888888766 8999999999


Q ss_pred             hhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhc-ceeeeeEEeccc---ccchHHHHHHHHHHHHcCCce
Q 024411          159 GKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSK-RLRMEGFIVLDH---YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       159 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      ...+..++++++++|+++.+|...+.     ....+...++.+ ++++.+.....+   .....+.++++++++.+|+++
T Consensus       219 ~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  293 (327)
T 1qor_A          219 RDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIK  293 (327)
T ss_dssp             GGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHhcCCCEEEEEecCCCC-----CCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcc
Confidence            88899999999999999999875421     122344556666 677665443222   112356789999999999999


Q ss_pred             eeee--hhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          235 YVED--MAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~--~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.++  ++|+|+++++||+.+.+++..||+|+++
T Consensus       294 ~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          294 VDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             cccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9988  8999999999999999988889999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.5e-40  Score=277.86  Aligned_cols=252  Identities=20%  Similarity=0.237  Sum_probs=215.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------------------------------------cc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------------------TG   31 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------------------g~   31 (268)
                      -|++|+|+++|++|++|++||||++.                                                    |+
T Consensus        68 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~  147 (378)
T 3uko_A           68 HEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTST  147 (378)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCC
T ss_pred             ccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcc
Confidence            46789999999999999999999842                                                    48


Q ss_pred             cceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEE
Q 024411           32 WEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGS  110 (268)
Q Consensus        32 ~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~  110 (268)
                      |+||++++++.++++ |++++.. ++|.+++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|+++
T Consensus       148 ~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~  224 (378)
T 3uko_A          148 FSQYTVVHDVSVAKI-DPTAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGI  224 (378)
T ss_dssp             SBSEEEEEGGGEEEC-CTTSCHH-HHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEE
T ss_pred             eEeEEEechhheEEC-CCCCCHH-HhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Confidence            999999999999999 9985554 378889999999999988889999999999998 9999999999999999 89999


Q ss_pred             eCCHHHHHHHHHhcCCCeeeecC--ChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccC
Q 024411          111 AGSKDKVDLLKNKFGFDEAFNYK--EEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNL  186 (268)
Q Consensus       111 ~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~  186 (268)
                      ++++++.+.++ ++|+++++++.  .. ++.+.+++.+++++|++|||+|+ ..+..++++++++ |+++.+|....   
T Consensus       225 ~~~~~~~~~a~-~lGa~~vi~~~~~~~-~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~---  299 (378)
T 3uko_A          225 DIDSKKYETAK-KFGVNEFVNPKDHDK-PIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS---  299 (378)
T ss_dssp             CSCTTHHHHHH-TTTCCEEECGGGCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCT---
T ss_pred             cCCHHHHHHHH-HcCCcEEEccccCch-hHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCC---
Confidence            99999999999 99999999987  44 88999999987799999999998 7889999999996 99999987432   


Q ss_pred             CCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEE
Q 024411          187 DKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVV  264 (268)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  264 (268)
                       ......+...++. ++++.|+....+  ...+.++++++++.+|+++  +.++++|+|+++++||+.+.+++.. |+|+
T Consensus       300 -~~~~~~~~~~~~~-~~~i~g~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi  374 (378)
T 3uko_A          300 -GQEISTRPFQLVT-GRVWKGTAFGGF--KSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVL  374 (378)
T ss_dssp             -TCCEEECTHHHHT-TCEEEECSGGGC--CHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEE
T ss_pred             -CCccccCHHHHhc-CcEEEEEEecCC--CchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEE
Confidence             1122233444443 788887665433  2357789999999999887  4588899999999999999988765 9999


Q ss_pred             EecC
Q 024411          265 AVAP  268 (268)
Q Consensus       265 ~~~~  268 (268)
                      ++++
T Consensus       375 ~~~~  378 (378)
T 3uko_A          375 DTSK  378 (378)
T ss_dssp             ETTC
T ss_pred             ecCC
Confidence            9875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.7e-40  Score=273.10  Aligned_cols=241  Identities=27%  Similarity=0.293  Sum_probs=206.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCS   76 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~   76 (268)
                      -|++|+|+++|++|++|++||||+++       |+|+||++++++.++++ |++++.. ++|+++++++|||+++ +.++
T Consensus        73 ~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al-~~~~  149 (321)
T 3tqh_A           73 YDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQK-LEKLSFL-QAASLPTAGLTALQAL-NQAE  149 (321)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEEC-CTTSCHH-HHHHSHHHHHHHHHHH-HHTT
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccC-CCCCCHH-HHhhhhhHHHHHHHHH-HhcC
Confidence            46789999999999999999999875       78999999999999999 8885554 3778899999999999 7789


Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhh-HHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD-LNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~~~d~v~d  155 (268)
                      ++++++|||+||+|++|++++|+|+..|++|++++ ++++.+.++ ++|+++++|+++. + +.+.+     .++|++||
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~-~lGa~~~i~~~~~-~~~~~~~-----~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK-ALGAEQCINYHEE-DFLLAIS-----TPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHH-HHTCSEEEETTTS-CHHHHCC-----SCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHH-HcCCCEEEeCCCc-chhhhhc-----cCCCEEEE
Confidence            99999999999889999999999999999999998 667788888 9999999999876 5 44333     36999999


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      |+|++.+..++++++++|+++.+|....        .........+++++.++...    ...+.++++++++.+|++++
T Consensus       222 ~~g~~~~~~~~~~l~~~G~iv~~g~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~g~l~~  289 (321)
T 3tqh_A          222 LVGGDVGIQSIDCLKETGCIVSVPTITA--------GRVIEVAKQKHRRAFGLLKQ----FNIEELHYLGKLVSEDKLRI  289 (321)
T ss_dssp             SSCHHHHHHHGGGEEEEEEEEECCSTTH--------HHHHHHHHHTTCEEECCCCC----CCHHHHHHHHHHHHTTSSCC
T ss_pred             CCCcHHHHHHHHhccCCCEEEEeCCCCc--------hhhhhhhhhcceEEEEEecC----CCHHHHHHHHHHHHCCCccc
Confidence            9999777999999999999999976321        11122455677877774322    23678999999999999999


Q ss_pred             eeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          236 VEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       236 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      .++++|+++++++||+.+.+++..||+|+++.
T Consensus       290 ~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          290 EISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            99999999999999999999999999999863

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-41  Score=278.10  Aligned_cols=258  Identities=25%  Similarity=0.336  Sum_probs=209.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      -|++|+|+++|++|++|++||+|+++   |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.++++++
T Consensus        66 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g  143 (349)
T 4a27_A           66 FECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKI-PDDMSFS-EAAAFPMNFVTAYVMLFEVANLREG  143 (349)
T ss_dssp             SEEEEEEEEECTTCCSCCTTCEEEEECSSCCSBSEEEEEGGGEEEC-CTTSCHH-HHHTSHHHHHHHHHHHHTTSCCCTT
T ss_pred             ceeEEEEEEeCCCCCCCCCCCEEEEecCCCcceEEEEecHHHeEEC-CCCCCHH-HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999987   89999999999999999 9985554 3778899999999999888999999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++|||+|++|++|++++|+|+.+| ++|++++ ++++.+.++  +|++++++ ... ++.+.+++.+++++|++|||+|+
T Consensus       144 ~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~~~~~-~~~-~~~~~~~~~~~~g~Dvv~d~~g~  218 (349)
T 4a27_A          144 MSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVTHLFD-RNA-DYVQEVKRISAEGVDIVLDCLCG  218 (349)
T ss_dssp             CEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSSEEEE-TTS-CHHHHHHHHCTTCEEEEEEECC-
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCcEEEc-CCc-cHHHHHHHhcCCCceEEEECCCc
Confidence            999999999999999999999985 5899888 667777664  89999998 555 88889999887799999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCC-----------CccccchHHHHhcceeeeeEEecccc------cchHHHHH
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDK-----------PEGVHNLMYLVSKRLRMEGFIVLDHY------HLYPKFLE  222 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  222 (268)
                      +.+..++++++++|+++.+|.........           .....+...++.++.++.++....+.      ....+.++
T Consensus       219 ~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~  298 (349)
T 4a27_A          219 DNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVE  298 (349)
T ss_dssp             ------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHH
Confidence            77899999999999999998753211000           01124456677888999988764431      22377899


Q ss_pred             HHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          223 MIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       223 ~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ++++++.+|++++.++++|+++++++||+.+.+++..||+|+++++
T Consensus       299 ~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          299 KLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             HHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             HHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            9999999999999999999999999999999999999999999863

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=1.3e-40  Score=277.55  Aligned_cols=253  Identities=21%  Similarity=0.315  Sum_probs=209.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|+++|++|++|++||||++.    |+|+||++++++.++++ |++++.. ++|+++++++|||+++...+++++
T Consensus        90 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~i-P~~l~~~-~Aa~l~~~~~ta~~~l~~~~~~~~  167 (357)
T 1zsy_A           90 NEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQV-PSDIPLQ-SAATLGVNPCTAYRMLMDFEQLQP  167 (357)
T ss_dssp             SCCEEEEEEECTTCCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEE-CSSSCHH-HHHHTTSHHHHHHHHHHHSSCCCT
T ss_pred             ceEEEEEEEeCCCCCCCCCCCEEEEcCCCCccceeEEecCHHHcEEC-CCCCCHH-HHhhhcccHHHHHHHHHHHhccCC
Confidence            57899999999999999999999976    89999999999999999 9985544 377888889999999988889999


Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC--CccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD----KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE--GIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~----~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~--~~d~v  153 (268)
                      +++|||+|++|++|++++|+|+.+|+++++++++++    +.+.++ ++|+++++++++.  ..+.+.+.+.+  ++|++
T Consensus       168 g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~vi~~~~~--~~~~~~~~~~~~~~~Dvv  244 (357)
T 1zsy_A          168 GDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK-SLGAEHVITEEEL--RRPEMKNFFKDMPQPRLA  244 (357)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH-HTTCSEEEEHHHH--HSGGGGGTTSSSCCCSEE
T ss_pred             CCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH-hcCCcEEEecCcc--hHHHHHHHHhCCCCceEE
Confidence            999999999999999999999999999988876532    467787 9999999987531  12345555544  59999


Q ss_pred             EeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-----ccchHHHHHHHHHHH
Q 024411          154 FENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-----YHLYPKFLEMIIPHI  228 (268)
Q Consensus       154 ~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  228 (268)
                      |||+|+.....++++++++|+++.+|...+.     ....+...++.+++++.++....+     +....+.++++++++
T Consensus       245 id~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (357)
T 1zsy_A          245 LNCVGGKSSTELLRQLARGGTMVTYGGMAKQ-----PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLI  319 (357)
T ss_dssp             EESSCHHHHHHHHTTSCTTCEEEECCCCTTC-----CBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHhhCCCCEEEEEecCCCC-----CCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHH
Confidence            9999997777899999999999999864321     123445566779999998876432     112346789999999


Q ss_pred             HcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          229 KEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       229 ~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      .+|++++.+.++|+|+++++||+.+.+++..||+|+++
T Consensus       320 ~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          320 RRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             HTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             HcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            99999998878999999999999999888889999975

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1e-40  Score=279.03  Aligned_cols=254  Identities=18%  Similarity=0.257  Sum_probs=212.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCC-----------CCCchhhhhhccchHHHHH
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHT-----------DVPLSYYTGILGMPGMTAY   68 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~-----------~~~~~~~~a~l~~~~~~a~   68 (268)
                      .|++|+|+++|++|++|++||+|++.    |+|+||++++++.++++ |+           +++.. ++|+++++++|||
T Consensus        78 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~-P~~~~~~~~~~~~~~~~~-~aa~l~~~~~ta~  155 (364)
T 1gu7_A           78 NEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL-PNPAQSKANGKPNGLTIN-QGATISVNPLTAY  155 (364)
T ss_dssp             SCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEE-CCHHHHHHTTCSCCCCHH-HHHTCTTHHHHHH
T ss_pred             ceeEEEEEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEc-CCccccccccccCCCCHH-HHhhccccHHHHH
Confidence            47899999999999999999999976    89999999999999999 87           75444 3788888999999


Q ss_pred             HHhhhhcCCCCC-cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHhcCCCeeeecCC---hhhHHH
Q 024411           69 VGFYEVCSPKHG-ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK----VDLLKNKFGFDEAFNYKE---EADLNA  140 (268)
Q Consensus        69 ~~l~~~~~~~~~-~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~----~~~~~~~~g~~~v~~~~~---~~~~~~  140 (268)
                      +++.+.++++++ ++|||+|++|++|++++|+|+.+|++|++++++.++    .+.++ ++|+++++++++   . ++.+
T Consensus       156 ~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~-~~~~  233 (364)
T 1gu7_A          156 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQVITEDQNNSR-EFGP  233 (364)
T ss_dssp             HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSEEEEHHHHHCG-GGHH
T ss_pred             HHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH-hcCCeEEEecCccchH-HHHH
Confidence            999877789999 999999999999999999999999999999866554    56777 999999999874   4 7778


Q ss_pred             HHHHHC--CC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc----
Q 024411          141 ALKRYF--PE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH----  213 (268)
Q Consensus       141 ~~~~~~--~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  213 (268)
                      .+++.+  ++ ++|++|||+|+.....++++++++|+++.+|...+     .....+...++.+++++.++....+    
T Consensus       234 ~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  308 (364)
T 1gu7_A          234 TIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSF-----QPVTIPTSLYIFKNFTSAGFWVTELLKNN  308 (364)
T ss_dssp             HHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSS-----CCEEECHHHHHHSCCEEEECCHHHHHTTC
T ss_pred             HHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCC-----CCcccCHHHHhhcCcEEEEEchhHhcccC
Confidence            888876  44 89999999999666688999999999999987432     1123445567789999998765443    


Q ss_pred             ccchHHHHHHHHHHHHcCCceeeeehhcccc---cHHHHHHHHHcCCccceEEEEe
Q 024411          214 YHLYPKFLEMIIPHIKEGKLVYVEDMAEGLE---SAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~---~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +....+.++++++++.+|++++.+..+++++   ++++||+.+.+++..||+|+++
T Consensus       309 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          309 KELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            1122467899999999999998766777765   9999999999888889999975

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=3.5e-40  Score=276.12  Aligned_cols=259  Identities=15%  Similarity=0.171  Sum_probs=212.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFY   72 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~   72 (268)
                      .|++|+|+++|++|++|++||||++.           |+|+||++++.+.++++ |++++.. +++++++++.|||+++.
T Consensus        68 ~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~-P~~~~~~-~aa~~~~~~~ta~~~l~  145 (371)
T 3gqv_A           68 TDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKI-PKGLSFE-QAAALPAGISTAGLAMK  145 (371)
T ss_dssp             SEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEEC-CTTCCHH-HHHTSHHHHHHHHHHHH
T ss_pred             cccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEEC-CCCCCHH-HHhhhhhhHHHHHHHHH
Confidence            57799999999999999999999975           79999999999999999 9985554 37778889999999997


Q ss_pred             hh-cCC-----------CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHH
Q 024411           73 EV-CSP-----------KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNA  140 (268)
Q Consensus        73 ~~-~~~-----------~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  140 (268)
                      +. .++           +++++|||+|++|++|++++|+|+..|++|++++ ++++.+.++ ++|+++++|+++. ++.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~vi~~~~~-~~~~  222 (371)
T 3gqv_A          146 LLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAK-SRGAEEVFDYRAP-NLAQ  222 (371)
T ss_dssp             HHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEETTST-THHH
T ss_pred             hhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHH-HcCCcEEEECCCc-hHHH
Confidence            76 443           8999999999999999999999999999999997 789999998 9999999999987 8999


Q ss_pred             HHHHHCCCCccEEEeCCCh-hhHHhHHHhh-hcCCEEEEEcccccccCCCCcc---ccchHHHHhcceeeeeEEeccc--
Q 024411          141 ALKRYFPEGIDIYFENVGG-KLLDAVLPNM-KIRGRIAACGMISQYNLDKPEG---VHNLMYLVSKRLRMEGFIVLDH--  213 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--  213 (268)
                      .+++.+++++|++|||+|+ ..+..+++++ +++|+++.+|...+........   ......++.+++++.++.....  
T Consensus       223 ~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~  302 (371)
T 3gqv_A          223 TIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSE  302 (371)
T ss_dssp             HHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCH
T ss_pred             HHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccH
Confidence            9999988889999999998 7789999999 5899999998644211000001   1112356778888888644322  


Q ss_pred             --ccchHHHHHHHHHHHHcCCceeeeehh--cccccHHHHHHHHHcCCccc-eEEEEec
Q 024411          214 --YHLYPKFLEMIIPHIKEGKLVYVEDMA--EGLESAPAALIGLFSGQNVG-KQVVAVA  267 (268)
Q Consensus       214 --~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~~a~~~~~~~~~~g-kvvi~~~  267 (268)
                        .....+.++++++++.+|++++.+..+  |+|+++++||+.+.+++..| |+|+.++
T Consensus       303 ~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~  361 (371)
T 3gqv_A          303 EERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLE  361 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeC
Confidence              122345567889999999998865544  89999999999999988877 6677664

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.9e-40  Score=274.40  Aligned_cols=244  Identities=20%  Similarity=0.246  Sum_probs=213.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-----------------------------------ccccceeEeec-CCcceeec
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-----------------------------------MTGWEEYSLIT-APHLFKIQ   47 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-----------------------------------~g~~~~~~~v~-~~~~~~~~   47 (268)
                      .|++|+|+++|++|++|++||+|++                                   .|+|+||++++ .+.++++ 
T Consensus        62 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~-  140 (345)
T 3jv7_A           62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPI-  140 (345)
T ss_dssp             SEEEEEEEEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEEC-
T ss_pred             cccEEEEEEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeC-
Confidence            5779999999999999999999986                                   27999999999 8889999 


Q ss_pred             CCCCCchhhhhhccchHHHHHHHhhh-hcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcC
Q 024411           48 HTDVPLSYYTGILGMPGMTAYVGFYE-VCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        48 p~~~~~~~~~a~l~~~~~~a~~~l~~-~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g  125 (268)
                      |+ ++.. ++|+++++++|||+++.+ ...++++++|+|+|+ |++|++++|+|+.+ +++|+++++++++.+.++ ++|
T Consensus       141 p~-~~~~-~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~lG  216 (345)
T 3jv7_A          141 GD-LDPV-AAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EVG  216 (345)
T ss_dssp             TT-CCHH-HHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HTT
T ss_pred             CC-CCHH-HhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcC
Confidence            87 6554 477899999999999977 458999999999998 99999999999999 679999999999999999 999


Q ss_pred             CCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcce
Q 024411          126 FDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRL  203 (268)
Q Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  203 (268)
                      +++++++++  ++.+.+++.+++ ++|++||++|+. .+..++++++++|+++.+|...+.     ....++ .++.+++
T Consensus       217 a~~~i~~~~--~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~-~~~~~~~  288 (345)
T 3jv7_A          217 ADAAVKSGA--GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGA-----HAKVGF-FMIPFGA  288 (345)
T ss_dssp             CSEEEECST--THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTC-----CEEEST-TTSCTTC
T ss_pred             CCEEEcCCC--cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCC-----CCCcCH-HHHhCCC
Confidence            999999875  788888888877 999999999995 899999999999999999875431     112233 5667888


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++.++....     .+.++++++++.+|++++. .++|+++++++||+.+.+++..||+|+.+
T Consensus       289 ~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          289 SVVTPYWGT-----RSELMEVVALARAGRLDIH-TETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             EEECCCSCC-----HHHHHHHHHHHHTTCCCCC-EEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             EEEEEecCC-----HHHHHHHHHHHHcCCCceE-EEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            888876654     6789999999999999984 47899999999999999999999999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.3e-39  Score=269.63  Aligned_cols=246  Identities=22%  Similarity=0.284  Sum_probs=214.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||++                               .|+|+||++++++.++++ |++++
T Consensus        61 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~-P~~~~  139 (339)
T 1rjw_A           61 HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKI-PDNLS  139 (339)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEEC-CTTSC
T ss_pred             ccceEEEEEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEEC-CCCCC
Confidence            4679999999999999999999974                               178999999999999999 99855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. ++|++++++.|||+++... +++++++|||+|+ |++|++++|+++.+|++|+++++++++.+.++ ++|+++++|+
T Consensus       140 ~~-~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~d~  215 (339)
T 1rjw_A          140 FE-EAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNP  215 (339)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECT
T ss_pred             HH-HhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEecC
Confidence            54 3788999999999999765 8999999999999 88999999999999999999999999999998 8999999998


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      ++. ++.+.+++.+ +++|+++|++|. ..+..++++++++|+++.+|...+      ....+...++.+++++.++...
T Consensus       216 ~~~-~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~  287 (339)
T 1rjw_A          216 LKE-DAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE------EMPIPIFDTVLNGIKIIGSIVG  287 (339)
T ss_dssp             TTS-CHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSC
T ss_pred             CCc-cHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCC------CCccCHHHHHhCCcEEEEeccC
Confidence            876 7777787766 579999999997 788999999999999999987432      1234556677899999886654


Q ss_pred             ccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          212 DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      .     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++++
T Consensus       288 ~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          288 T-----RKDLQEALQFAAEGKVKTII-EVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             C-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             C-----HHHHHHHHHHHHcCCCCccE-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            3     57789999999999999865 589999999999999998888999999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-39  Score=272.09  Aligned_cols=251  Identities=21%  Similarity=0.281  Sum_probs=215.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe----------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG----------------------------------------------------MTG   31 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~----------------------------------------------------~g~   31 (268)
                      -|++|+|+++|++|++|++||||++                                                    .|+
T Consensus        65 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~  144 (371)
T 1f8f_A           65 HEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSS  144 (371)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCC
T ss_pred             cccceEEEEeCCCCCCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCcc
Confidence            4679999999999999999999984                                                    178


Q ss_pred             cceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEE
Q 024411           32 WEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGS  110 (268)
Q Consensus        32 ~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~  110 (268)
                      |+||++++++.++++ |++++.. ++|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|+++
T Consensus       145 ~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          145 FATYALSRENNTVKV-TKDVPIE-LLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             SBSEEEEEGGGEEEE-CTTSCGG-GTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEE
T ss_pred             ccCeEEechhheEEC-CCCCCHH-HHHHhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Confidence            999999999999999 9985554 377888999999999977889999999999996 9999999999999999 79999


Q ss_pred             eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCC
Q 024411          111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKP  189 (268)
Q Consensus       111 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  189 (268)
                      ++++++.+.++ ++|+++++++++. ++.+.+++.+++++|++||++|. ..+..++++++++|+++.+|.....    .
T Consensus       222 ~~~~~~~~~a~-~lGa~~vi~~~~~-~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~  295 (371)
T 1f8f_A          222 DIVESRLELAK-QLGATHVINSKTQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLG----T  295 (371)
T ss_dssp             ESCHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTT----C
T ss_pred             CCCHHHHHHHH-HcCCCEEecCCcc-CHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCC----C
Confidence            99999999998 9999999999876 88888988887689999999997 7889999999999999999875321    1


Q ss_pred             ccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCcee--eeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          190 EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY--VEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ....+...++.+++++.++....+  ...+.++++++++.+|++++  .+++ |+|+++++||+.+.+++. +|+|++++
T Consensus       296 ~~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          296 TAQFDVNDLLLGGKTILGVVEGSG--SPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA  371 (371)
T ss_dssp             CCCCCHHHHHHTTCEEEECSGGGS--CHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred             ccccCHHHHHhCCCEEEEeCCCCC--chHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence            123455667788999988765432  12577999999999999975  4667 999999999999988765 79999864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.5e-39  Score=269.94  Aligned_cols=260  Identities=35%  Similarity=0.629  Sum_probs=220.6

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec-cccceeEeecCCcceeecCCCC---CchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM-TGWEEYSLITAPHLFKIQHTDV---PLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~-g~~~~~~~v~~~~~~~~~p~~~---~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      |++|+|++  ++|++|++||||++. |+|+||++++.+.++++ |+++   +.++++|+++++++|||+++.+.++++++
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~~G~~aey~~v~~~~~~~i-P~~~~~~~~~~~~a~l~~~~~ta~~al~~~~~~~~g  159 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKV-DPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAG  159 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEEEEESBSEEEEEGGGCEEC-CGGGGTTCGGGGGTTTSHHHHHHHHHHHHHSCCCTT
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEecCCCcEEEEEEchHHceec-CcccccCchhHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence            66888888  899999999999998 79999999999999999 8884   12545789999999999999888899999


Q ss_pred             --cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 --ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 --~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                        ++|||+|++|++|++++|+++..|+ +|+++++++++.+.+++++|++.++|+.+. ++.+.+.+.+++++|+++||+
T Consensus       160 ~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~-~~~~~~~~~~~~~~d~vi~~~  238 (357)
T 2zb4_A          160 SNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNV  238 (357)
T ss_dssp             SCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTS-CHHHHHHHHCTTCEEEEEESC
T ss_pred             CccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCch-HHHHHHHHhcCCCCCEEEECC
Confidence              9999999999999999999999999 999999999999988834999989998876 888888888766899999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCcccc----chHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCc
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVH----NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  233 (268)
                      |+..+..++++++++|+++.+|...+.....+....    ....++.+++++.++....+.....+.++++++++.+|++
T Consensus       239 G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l  318 (357)
T 2zb4_A          239 GGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKL  318 (357)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCC
Confidence            998899999999999999999876542111110000    0245678899998876654444457789999999999999


Q ss_pred             eeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          234 VYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       234 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ++.+..+|+|+++++||+.+.+++..||+|+++++
T Consensus       319 ~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  353 (357)
T 2zb4_A          319 KIKETVINGLENMGAAFQSMMTGGNIGKQIVCISE  353 (357)
T ss_dssp             CCCEEEEECGGGHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             cCccceecCHHHHHHHHHHHHcCCCCceEEEEEec
Confidence            98877889999999999999998888999998853

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.1e-39  Score=272.06  Aligned_cols=248  Identities=15%  Similarity=0.212  Sum_probs=211.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------------------------------
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------------------------------   29 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------------------------------   29 (268)
                      -|++|+|+++|++|++|++||||++.                                                      
T Consensus        67 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~  146 (376)
T 1e3i_A           67 HECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMG  146 (376)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTT
T ss_pred             ccccEEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccC
Confidence            46789999999999999999999852                                                      


Q ss_pred             -cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EE
Q 024411           30 -TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YV  107 (268)
Q Consensus        30 -g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V  107 (268)
                       |+|+||++++++.++++ |++++.. ++|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|
T Consensus       147 ~G~~aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~V  223 (376)
T 1e3i_A          147 VSSFSQYTVVSEANLARV-DDEANLE-RVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRI  223 (376)
T ss_dssp             TCCSBSEEEEEGGGEEEC-CTTCCHH-HHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEE
T ss_pred             CccceeEEEeccccEEEC-CCCCCHH-HhhhhccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeE
Confidence             78999999999999999 9985544 377888999999999988889999999999996 9999999999999999 89


Q ss_pred             EEEeCCHHHHHHHHHhcCCCeeeecCC--hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEccccc
Q 024411          108 VGSAGSKDKVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQ  183 (268)
Q Consensus       108 ~~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~  183 (268)
                      +++++++++.+.++ ++|+++++|+++  . ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|... 
T Consensus       224 i~~~~~~~~~~~a~-~lGa~~vi~~~~~~~-~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~-  300 (376)
T 1e3i_A          224 IAIDINGEKFPKAK-ALGATDCLNPRELDK-PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-  300 (376)
T ss_dssp             EEECSCGGGHHHHH-HTTCSEEECGGGCSS-CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-
T ss_pred             EEEcCCHHHHHHHH-HhCCcEEEccccccc-hHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCC-
Confidence            99999999999998 999999998874  3 68888888776689999999997 7889999999999 9999998721 


Q ss_pred             ccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccce
Q 024411          184 YNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGK  261 (268)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gk  261 (268)
                           .....+...++.++ ++.++....+  ...+.++++++++.+|+++  +.++++|+|+++++||+.+.+++ .+|
T Consensus       301 -----~~~~~~~~~~~~~~-~i~g~~~~~~--~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~K  371 (376)
T 1e3i_A          301 -----DEMTIPTVDVILGR-SINGTFFGGW--KSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SIR  371 (376)
T ss_dssp             -----SEEEEEHHHHHTTC-EEEECSGGGC--CHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CSE
T ss_pred             -----CccccCHHHhhccC-eEEEEecCCC--CcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cce
Confidence                 12234555666677 8887654322  1356789999999999987  56788999999999999998876 479


Q ss_pred             EEEEe
Q 024411          262 QVVAV  266 (268)
Q Consensus       262 vvi~~  266 (268)
                      +|+++
T Consensus       372 vvi~~  376 (376)
T 1e3i_A          372 TILTF  376 (376)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=3.2e-39  Score=270.73  Aligned_cols=248  Identities=19%  Similarity=0.229  Sum_probs=209.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|+++|++|++|++||||++.                                                   |+|
T Consensus        68 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~  147 (373)
T 1p0f_A           68 HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTF  147 (373)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCS
T ss_pred             cCceEEEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccc
Confidence            47799999999999999999999752                                                   789


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++..  +|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       148 aey~~v~~~~~~~i-P~~l~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~  223 (373)
T 1p0f_A          148 TEYTVVADIAVAKI-DPKAPLE--SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVG  223 (373)
T ss_dssp             BSEEEEETTSEEEE-CTTCCGG--GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeEEEEchhhEEEC-CCCCChh--hhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEC
Confidence            99999999999999 9985544  66788899999999988889999999999996 9999999999999999 899999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCC--hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLD  187 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  187 (268)
                      +++++.+.++ ++|+++++++++  . ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|.....   
T Consensus       224 ~~~~~~~~a~-~lGa~~vi~~~~~~~-~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~---  298 (373)
T 1p0f_A          224 THKDKFPKAI-ELGATECLNPKDYDK-PIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN---  298 (373)
T ss_dssp             SCGGGHHHHH-HTTCSEEECGGGCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTT---
T ss_pred             CCHHHHHHHH-HcCCcEEEecccccc-hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCC---
Confidence            9999999999 999999998874  3 68888888887799999999997 7889999999999 999999874320   


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                       .....+...++.++ ++.++....+.   .+.++++++++.+|+++  +.++++|+|+++++||+.+++++. +|+|++
T Consensus       299 -~~~~~~~~~~~~~~-~i~g~~~~~~~---~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~  372 (373)
T 1p0f_A          299 -ERLPLDPLLLLTGR-SLKGSVFGGFK---GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMI  372 (373)
T ss_dssp             -CCEEECTHHHHTTC-EEEECSGGGCC---GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEE
T ss_pred             -CccccCHHHhccCc-eEEeeccCCcC---HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEe
Confidence             11233445556666 88876543321   25688999999999987  567889999999999999987764 799987


Q ss_pred             e
Q 024411          266 V  266 (268)
Q Consensus       266 ~  266 (268)
                      +
T Consensus       373 ~  373 (373)
T 1p0f_A          373 Y  373 (373)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=5.4e-40  Score=274.72  Aligned_cols=247  Identities=19%  Similarity=0.233  Sum_probs=213.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe------------------------------ccccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      .|++|+|+++|++|++|++||+|++                              .|+|+||++++++.++++ |++  +
T Consensus        81 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~-P~~--~  157 (370)
T 4ej6_A           81 HEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEI-PLT--L  157 (370)
T ss_dssp             CSEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE-CTT--S
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEEC-CCC--C
Confidence            5789999999999999999999986                              289999999999999999 988  4


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      +++.|+++.++.+||+++ ..++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|+++++|+
T Consensus       158 ~~~~aal~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~  234 (370)
T 4ej6_A          158 DPVHGAFCEPLACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAE-EVGATATVDP  234 (370)
T ss_dssp             CTTGGGGHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECT
T ss_pred             CHHHHhhhhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEECC
Confidence            444555888999999999 6789999999999998 9999999999999999 9999999999999998 9999999999


Q ss_pred             CChhhHHHHHHH---HCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeE
Q 024411          133 KEEADLNAALKR---YFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF  208 (268)
Q Consensus       133 ~~~~~~~~~~~~---~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (268)
                      +.. ++.+.+++   .+++++|++|||+|. ..+..++++++++|+++.+|...+.    .....+...++.+++++.|+
T Consensus       235 ~~~-~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~  309 (370)
T 4ej6_A          235 SAG-DVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQG----EKVEIEPFDILFRELRVLGS  309 (370)
T ss_dssp             TSS-CHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTT----CCCCCCHHHHHHTTCEEEEC
T ss_pred             CCc-CHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCC----CccccCHHHHHhCCcEEEEe
Confidence            887 88888888   666799999999996 7899999999999999999875421    12345677888999999997


Q ss_pred             EecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCC-ccceEEEEec
Q 024411          209 IVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQ-NVGKQVVAVA  267 (268)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~~  267 (268)
                      ....      ..++++++++.+|+++  +.++++|+|+++++|++.+.+++ ..+|++++++
T Consensus       310 ~~~~------~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          310 FINP------FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAE  365 (370)
T ss_dssp             CSCT------TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred             ccCh------HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence            6543      2378899999999994  56888999999999999998866 5578888765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.8e-39  Score=270.49  Aligned_cols=244  Identities=16%  Similarity=0.152  Sum_probs=208.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||++                               .|+|+||++++++.++++ |+++ 
T Consensus        69 ~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~i-P~~l-  146 (356)
T 1pl8_A           69 HEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKL-PDNV-  146 (356)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC-CTTS-
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEEC-cCCC-
Confidence            4779999999999999999999985                               279999999999999999 9984 


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                       +++.|++..++.+||+++ +.++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|++++++
T Consensus       147 -~~~~aa~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~  222 (356)
T 1pl8_A          147 -TFEEGALIEPLSVGIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQ  222 (356)
T ss_dssp             -CHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEE
T ss_pred             -CHHHHHhhchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEc
Confidence             444444557889999999 6778999999999997 9999999999999999 9999999999999999 999999999


Q ss_pred             cC---ChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeee
Q 024411          132 YK---EEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEG  207 (268)
Q Consensus       132 ~~---~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (268)
                      ++   .. ++.+.+++.+++++|++||++|. ..+..++++++++|+++.+|...      .....+...++.+++++.+
T Consensus       223 ~~~~~~~-~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~~~~~i~g  295 (356)
T 1pl8_A          223 ISKESPQ-EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS------EMTTVPLLHAAIREVDIKG  295 (356)
T ss_dssp             CSSCCHH-HHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC------SCCCCCHHHHHHTTCEEEE
T ss_pred             Ccccccc-hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCC------CCCccCHHHHHhcceEEEE
Confidence            87   34 77778877665689999999998 57899999999999999998632      1123455677889999988


Q ss_pred             EEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          208 FIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +..+      .+.++++++++.+|+++  +.++++|+|+++++||+.+.++ ..+|+|++++
T Consensus       296 ~~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~  350 (356)
T 1pl8_A          296 VFRY------CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCD  350 (356)
T ss_dssp             CCSC------SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECC
T ss_pred             eccc------HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCC
Confidence            6543      23478899999999864  6777899999999999999988 7899999885

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1.6e-40  Score=300.39  Aligned_cols=252  Identities=19%  Similarity=0.248  Sum_probs=217.4

Q ss_pred             CCccceEEEEecCCCCCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            3 PISGYGVAKVLDSENPEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         3 ~~~~~G~v~~vG~~v~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      ..|++|+|+++|++|++|++||||+++  |+|+||++++.+.++++ |++++.. ++|++++.++|||+++.+.+++++|
T Consensus       269 G~E~aG~V~~vG~~V~~~~vGDrV~~~~~G~~ae~~~v~~~~~~~i-P~~ls~~-~AA~l~~~~~Ta~~al~~~a~l~~G  346 (795)
T 3slk_A          269 GSEGAGVVVETGPGVTGLAPGDRVMGMIPKAFGPLAVADHRMVTRI-PAGWSFA-RAASVPIVFLTAYYALVDLAGLRPG  346 (795)
T ss_dssp             CCCEEEEEEEECSSCCSSCTTCEEEECCSSCSSSEEEEETTSEEEC-CTTCCHH-HHHHHHHHHHHHHCCCCCCTCCCTT
T ss_pred             cceeEEEEEEeCCCCCcCCCCCEEEEEecCCCcCEEEeehHHEEEC-CCCCCHH-HHHhhhHHHHHHHHHHHHHhCCCCC
Confidence            368899999999999999999999998  89999999999999999 9985544 3889999999999999888999999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~  159 (268)
                      ++|||+|++|++|++++|+|+..|++|+++++++ +.+.+  ++|++++++++.. ++.+.+++.+++ ++|+|||++|+
T Consensus       347 ~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l--~lga~~v~~~~~~-~~~~~i~~~t~g~GvDvVld~~gg  422 (795)
T 3slk_A          347 ESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAV--ELSREHLASSRTC-DFEQQFLGATGGRGVDVVLNSLAG  422 (795)
T ss_dssp             CCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGS--CSCGGGEECSSSS-THHHHHHHHSCSSCCSEEEECCCT
T ss_pred             CEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhh--hcChhheeecCCh-hHHHHHHHHcCCCCeEEEEECCCc
Confidence            9999999999999999999999999999999654 55544  3888999999887 999999999988 99999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHcCCceeeee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLVYVED  238 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~  238 (268)
                      +.+..++++++++|+++.+|.....      ... ......+++++.+++.... +....+.++++++++.+|++++.+.
T Consensus       423 ~~~~~~l~~l~~~Gr~v~iG~~~~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~  495 (795)
T 3slk_A          423 EFADASLRMLPRGGRFLELGKTDVR------DPV-EVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPV  495 (795)
T ss_dssp             TTTHHHHTSCTTCEEEEECCSTTCC------CHH-HHHHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCE
T ss_pred             HHHHHHHHHhcCCCEEEEecccccc------Ccc-cccccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcc
Confidence            9999999999999999999874321      111 1122346777776665322 3345678999999999999999999


Q ss_pred             hhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          239 MAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       239 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ++|+++++++||+.+++++..||+|++++
T Consensus       496 ~~~~l~~~~eA~~~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          496 TAWDVRQAPEALRHLSQARHVGKLVLTMP  524 (795)
T ss_dssp             EEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred             eeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence            99999999999999999999999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.6e-39  Score=269.87  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=211.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|+++|++|++|++||||++.                                                   |+|
T Consensus        68 hE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~  147 (374)
T 1cdo_A           68 HEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTF  147 (374)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCS
T ss_pred             ccceEEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccc
Confidence            47899999999999999999999852                                                   789


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++.. ++|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       148 aey~~v~~~~~~~~-P~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~  224 (374)
T 1cdo_A          148 SQYTVVNQIAVAKI-DPSAPLD-TVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVD  224 (374)
T ss_dssp             BSEEEEEGGGEEEC-CTTCCHH-HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             eeEEEEchhheEEC-CCCCCHH-HHhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEc
Confidence            99999999999999 9985554 378888999999999988889999999999996 9999999999999999 899999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCC--hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLD  187 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  187 (268)
                      +++++.+.++ ++|+++++++++  . ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|...+    
T Consensus       225 ~~~~~~~~~~-~lGa~~vi~~~~~~~-~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~----  298 (374)
T 1cdo_A          225 LNPDKFEKAK-VFGATDFVNPNDHSE-PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL----  298 (374)
T ss_dssp             SCGGGHHHHH-HTTCCEEECGGGCSS-CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS----
T ss_pred             CCHHHHHHHH-HhCCceEEeccccch-hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCC----
Confidence            9999999998 999999998874  3 67888888776689999999997 7889999999999 99999987432    


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                       .....+...++.++ ++.++....+  ...+.++++++++.+|+++  +.++++|+|+++++||+.+++++. +|+|++
T Consensus       299 -~~~~~~~~~~~~~~-~i~g~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~  373 (374)
T 1cdo_A          299 -HDVATRPIQLIAGR-TWKGSMFGGF--KGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLS  373 (374)
T ss_dssp             -SCEEECHHHHHTTC-EEEECSGGGC--CHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEE
T ss_pred             -CCcccCHHHHhcCC-eEEEEecCCC--CcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEe
Confidence             11234445566676 8887654332  1356789999999999987  567889999999999999988775 799987


Q ss_pred             e
Q 024411          266 V  266 (268)
Q Consensus       266 ~  266 (268)
                      +
T Consensus       374 ~  374 (374)
T 1cdo_A          374 L  374 (374)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5e-41  Score=279.30  Aligned_cols=251  Identities=19%  Similarity=0.215  Sum_probs=212.6

Q ss_pred             CccceEEEEecCCC-CCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcC
Q 024411            4 ISGYGVAKVLDSEN-PEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCS   76 (268)
Q Consensus         4 ~~~~G~v~~vG~~v-~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~   76 (268)
                      -|++|+|+++|++| ++|++||+|++.      |+|+||++++++.++++ |++++.. ++|++++.++|||+++. .++
T Consensus        85 ~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~~~-~~~  161 (349)
T 3pi7_A           85 FEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPL-LDTVRDE-DGAAMIVNPLTAIAMFD-IVK  161 (349)
T ss_dssp             SEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEEC-CTTCCC---GGGSSHHHHHHHHHHH-HHH
T ss_pred             ceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEEC-CCCCCHH-HHhhccccHHHHHHHHH-HHh
Confidence            56799999999999 999999999975      89999999999999999 9985554 37888999999997764 445


Q ss_pred             CCCC-cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           77 PKHG-ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        77 ~~~~-~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                       +++ ++++|+||+|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+++. ++.+.+++.+++ ++|++|
T Consensus       162 -~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~-~~~~~v~~~~~~~g~D~vi  238 (349)
T 3pi7_A          162 -QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIGAAHVLNEKAP-DFEATLREVMKAEQPRIFL  238 (349)
T ss_dssp             -HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HHTCSEEEETTST-THHHHHHHHHHHHCCCEEE
T ss_pred             -hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEECCcH-HHHHHHHHHhcCCCCcEEE
Confidence             555 79999999999999999999999999999999999999999 9999999999887 899999998876 899999


Q ss_pred             eCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccch-HHHHhcceeeeeEEecccc----cchHHHHHHHHHHHH
Q 024411          155 ENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL-MYLVSKRLRMEGFIVLDHY----HLYPKFLEMIIPHIK  229 (268)
Q Consensus       155 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  229 (268)
                      ||+|+..+..++++++++|+++.+|...+.     ....+. ..++.+++++.++....+.    ....+.++++++++.
T Consensus       239 d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~  313 (349)
T 3pi7_A          239 DAVTGPLASAIFNAMPKRARWIIYGRLDPD-----ATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFS  313 (349)
T ss_dssp             ESSCHHHHHHHHHHSCTTCEEEECCCSCCS-----CCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTT
T ss_pred             ECCCChhHHHHHhhhcCCCEEEEEeccCCC-----CCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHH
Confidence            999998889999999999999999874432     122444 6778899999998765541    223567888999999


Q ss_pred             cCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          230 EGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       230 ~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +|++++.++++|+|+++++||+.+. ++..||+|+++
T Consensus       314 ~g~l~~~i~~~~~l~~~~~A~~~~~-~~~~gKvvl~p  349 (349)
T 3pi7_A          314 DGRWSTDVTAVVPLAEAIAWVPAEL-TKPNGKVFIRP  349 (349)
T ss_dssp             TSSCCC-CCEEEEHHHHHHHHHHHH-TSSSSCEEEEC
T ss_pred             cCCcccccceEEcHHHHHHHHHHHh-CCCCceEEEeC
Confidence            9999999999999999999999554 45679999975

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=6.1e-39  Score=269.14  Aligned_cols=250  Identities=20%  Similarity=0.237  Sum_probs=211.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|+++|++|++|++||||++.                                                   |+|
T Consensus        67 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~  146 (374)
T 2jhf_A           67 HEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTF  146 (374)
T ss_dssp             CSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCS
T ss_pred             cCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccC
Confidence            47799999999999999999999852                                                   789


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++.. ++|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       147 aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~  223 (374)
T 2jhf_A          147 SQYTVVDEISVAKI-DAASPLE-KVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVD  223 (374)
T ss_dssp             BSEEEEEGGGEEEC-CTTCCHH-HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             eeEEEEchHHeEEC-CCCCCHH-HhhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999 9985554 378888999999999988889999999999996 9999999999999999 899999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCC--hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLD  187 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  187 (268)
                      +++++.+.++ ++|+++++|+++  . ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|.....   
T Consensus       224 ~~~~~~~~~~-~lGa~~vi~~~~~~~-~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~---  298 (374)
T 2jhf_A          224 INKDKFAKAK-EVGATECVNPQDYKK-PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS---  298 (374)
T ss_dssp             SCGGGHHHHH-HTTCSEEECGGGCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTT---
T ss_pred             CCHHHHHHHH-HhCCceEecccccch-hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCC---
Confidence            9999999998 999999998874  3 68888888877789999999997 7889999999999 999999874321   


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                       .....+...++.++ ++.++....+  ...+.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|++
T Consensus       299 -~~~~~~~~~~~~~~-~i~g~~~~~~--~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~  373 (374)
T 2jhf_A          299 -QNLSMNPMLLLSGR-TWKGAIFGGF--KSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILT  373 (374)
T ss_dssp             -CCEEECTHHHHTTC-EEEECSGGGC--CHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEE
T ss_pred             -CccccCHHHHhcCC-eEEEeccCCC--ChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEe
Confidence             11233445566677 8887654332  1256789999999999987  467789999999999999988764 799987


Q ss_pred             e
Q 024411          266 V  266 (268)
Q Consensus       266 ~  266 (268)
                      +
T Consensus       374 ~  374 (374)
T 2jhf_A          374 F  374 (374)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-39  Score=272.26  Aligned_cols=246  Identities=20%  Similarity=0.225  Sum_probs=213.9

Q ss_pred             CccceEEEEecCCCC------CCCCCCeEEe---------------------------------------ccccceeEee
Q 024411            4 ISGYGVAKVLDSENP------EFNKGDLVWG---------------------------------------MTGWEEYSLI   38 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~------~~~~Gd~V~~---------------------------------------~g~~~~~~~v   38 (268)
                      -|++|+|+++| +|+      +|++||||++                                       .|+|+||+++
T Consensus        77 hE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v  155 (380)
T 1vj0_A           77 HEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVL  155 (380)
T ss_dssp             CEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEE
T ss_pred             cCcEEEEEEeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEE
Confidence            47799999999 999      9999999986                                       2789999999


Q ss_pred             -cCCcceeecCCCCCchhh-hhhccchHHHHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH
Q 024411           39 -TAPHLFKIQHTDVPLSYY-TGILGMPGMTAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK  114 (268)
Q Consensus        39 -~~~~~~~~~p~~~~~~~~-~a~l~~~~~~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~  114 (268)
                       +++.++++ |++  ++++ +|++.++++|||+++ ..++ ++++++|||+| +|++|++++|+|+.+|+ +|+++++++
T Consensus       156 ~~~~~~~~i-P~~--l~~~~~Aa~~~~~~ta~~al-~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~  230 (380)
T 1vj0_A          156 DPETDVLKV-SEK--DDLDVLAMAMCSGATAYHAF-DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSP  230 (380)
T ss_dssp             CTTCCEEEE-CTT--SCHHHHHHHTTHHHHHHHHH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             cccceEEEC-CCC--CChHHhHhhhcHHHHHHHHH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCH
Confidence             99999999 998  4444 666666999999999 4578 99999999999 69999999999999994 999999999


Q ss_pred             HHHHHHHHhcCCCeeeecC---ChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCC
Q 024411          115 DKVDLLKNKFGFDEAFNYK---EEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKP  189 (268)
Q Consensus       115 ~~~~~~~~~~g~~~v~~~~---~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  189 (268)
                      ++.+.++ ++|++++++++   +. ++.+.+++.+++ ++|++||++|. ..+..++++++++|+++.+|....    ..
T Consensus       231 ~~~~~~~-~lGa~~vi~~~~~~~~-~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~----~~  304 (380)
T 1vj0_A          231 NRLKLAE-EIGADLTLNRRETSVE-ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVP----QD  304 (380)
T ss_dssp             HHHHHHH-HTTCSEEEETTTSCHH-HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSC----CC
T ss_pred             HHHHHHH-HcCCcEEEeccccCcc-hHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC----CC
Confidence            9999999 99999999987   55 888889998887 89999999997 689999999999999999987430    11


Q ss_pred             ccccchHH-HHhcceeeeeEEecccccchHHHHHHHHHHHHc--CCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          190 EGVHNLMY-LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKE--GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ....+... ++.+++++.++....     .+.++++++++++  |++++.++++|+|+++++||+.+.+++.. |+|+++
T Consensus       305 ~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~  378 (380)
T 1vj0_A          305 PVPFKVYEWLVLKNATFKGIWVSD-----TSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVILYP  378 (380)
T ss_dssp             CEEECHHHHTTTTTCEEEECCCCC-----HHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEEC
T ss_pred             CeeEchHHHHHhCCeEEEEeecCC-----HHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEe
Confidence            12344555 778999999876654     6789999999999  99988888899999999999999988877 999987


Q ss_pred             c
Q 024411          267 A  267 (268)
Q Consensus       267 ~  267 (268)
                      +
T Consensus       379 ~  379 (380)
T 1vj0_A          379 E  379 (380)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=4.7e-39  Score=269.78  Aligned_cols=250  Identities=21%  Similarity=0.267  Sum_probs=211.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|+++|++|++|++||||++.                                                   |+|
T Consensus        66 hE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~  145 (373)
T 2fzw_A           66 HLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTF  145 (373)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCS
T ss_pred             ccccEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccc
Confidence            46799999999999999999999852                                                   789


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      +||++++++.++++ |++++.. ++|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       146 aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~  222 (373)
T 2fzw_A          146 SEYTVVADISVAKI-DPLAPLD-KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVD  222 (373)
T ss_dssp             BSEEEEEGGGEEEC-CTTSCHH-HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeEEEEchhheEEC-CCCCCHH-HHhhhccHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999 9985554 378888999999999988889999999999996 9999999999999999 899999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCC--hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCC
Q 024411          112 GSKDKVDLLKNKFGFDEAFNYKE--EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLD  187 (268)
Q Consensus       112 ~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  187 (268)
                      +++++.+.++ ++|+++++++++  . ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|.....   
T Consensus       223 ~~~~~~~~~~-~lGa~~vi~~~~~~~-~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~---  297 (373)
T 2fzw_A          223 INKDKFARAK-EFGATECINPQDFSK-PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASG---  297 (373)
T ss_dssp             SCGGGHHHHH-HHTCSEEECGGGCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT---
T ss_pred             CCHHHHHHHH-HcCCceEeccccccc-cHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCC---
Confidence            9999999998 999999998874  3 68888888887789999999997 7889999999999 999999874321   


Q ss_pred             CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEE
Q 024411          188 KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVA  265 (268)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  265 (268)
                       .....+...++.++ ++.++....+  ...+.++++++++.+|+++  +.++++|+|+++++||+.+.+++. +|+|++
T Consensus       298 -~~~~~~~~~~~~~~-~i~g~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~  372 (373)
T 2fzw_A          298 -EEIATRPFQLVTGR-TWKGTAFGGW--KSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVK  372 (373)
T ss_dssp             -CCEEECTHHHHTTC-EEEECSGGGC--CHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEE
T ss_pred             -ceeeeCHHHHhcCC-EEEEeccCCC--CcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEe
Confidence             11233445566676 8887654332  1356799999999999987  567889999999999999988765 699987


Q ss_pred             e
Q 024411          266 V  266 (268)
Q Consensus       266 ~  266 (268)
                      +
T Consensus       373 ~  373 (373)
T 2fzw_A          373 I  373 (373)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.8e-39  Score=269.82  Aligned_cols=245  Identities=22%  Similarity=0.220  Sum_probs=209.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|++|++||||++.                              |+|+||++++++.++++ |++++ 
T Consensus        67 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~-  144 (348)
T 2d8a_A           67 HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKN-PKSIP-  144 (348)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEEC-CTTSC-
T ss_pred             ccceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEEC-CCCCC-
Confidence            47799999999999999999999863                              79999999999999999 99844 


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                       ++.|++..++.|||+++ ..+++ ++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|+++++++
T Consensus       145 -~~~aa~~~~~~ta~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~~~~  219 (348)
T 2d8a_A          145 -PEYATLQEPLGNAVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVGADYVINP  219 (348)
T ss_dssp             -HHHHTTHHHHHHHHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHTCSEEECT
T ss_pred             -HHHHHhhhHHHHHHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECC
Confidence             44343445889999999 56788 9999999999 9999999999999999 9999999999999998 9999999998


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccch-HHHHhcceeeeeEE
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL-MYLVSKRLRMEGFI  209 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  209 (268)
                      ++. ++.+.+++.+++ ++|++||++|. ..+..++++++++|+++.+|...+      ....+. ..++.+++++.|+.
T Consensus       220 ~~~-~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 2d8a_A          220 FEE-DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG------KVTIDFNNLIIFKALTIYGIT  292 (348)
T ss_dssp             TTS-CHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHTTTTTCEEEECC
T ss_pred             CCc-CHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CcccCchHHHHhCCcEEEEec
Confidence            876 888899998877 89999999998 788999999999999999987432      123444 56678899988865


Q ss_pred             ecccccchHHHHHHHHHHHHcCCc--eeeeehhcc-cccHHHHHHHHHcCCccceEEEEec
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEG-LESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l--~~~~~~~~~-~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ...    ..+.++++++++.+|++  ++.++++|+ |+++++||+.+++ +..+|+|++++
T Consensus       293 ~~~----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          293 GRH----LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             CCC----SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             CCC----cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence            432    15678999999999995  567778999 9999999999987 56799999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-39  Score=270.07  Aligned_cols=246  Identities=17%  Similarity=0.171  Sum_probs=208.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||++                               .|+|+||++++++.++++ |+++ 
T Consensus        66 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~i-P~~~-  143 (352)
T 1e3j_A           66 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL-PDNV-  143 (352)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC-CTTS-
T ss_pred             ccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEEC-cCCC-
Confidence            4779999999999999999999985                               288999999999999999 9884 


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                       +++.|++..++.+||+++ +.++++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ ++|+++++++
T Consensus       144 -~~~~aa~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~  219 (352)
T 1e3j_A          144 -SLEEGALLEPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVV  219 (352)
T ss_dssp             -CHHHHHTHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEEC
T ss_pred             -CHHHHHhhchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcC
Confidence             444444557889999999 6778999999999997 99999999999999999999999999999998 9999999998


Q ss_pred             CC-hhhHHHHHHHHCC---C-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeee
Q 024411          133 KE-EADLNAALKRYFP---E-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRME  206 (268)
Q Consensus       133 ~~-~~~~~~~~~~~~~---~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (268)
                      ++ . ++.+.+++.++   + ++|++||++|. ..+..++++++++|+++.+|...      .....+...++.+++++.
T Consensus       220 ~~~~-~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~~~~~i~  292 (352)
T 1e3j_A          220 DPAK-EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS------QMVTVPLVNACAREIDIK  292 (352)
T ss_dssp             CTTT-SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS------SCCCCCHHHHHTTTCEEE
T ss_pred             cccc-cHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC------CCccccHHHHHhcCcEEE
Confidence            74 4 66777777665   4 89999999998 57899999999999999998632      112344567788899988


Q ss_pred             eEEecccccchHHHHHHHHHHHHcCCc--eeeeehhcccccHHHHHHHHHcCC-ccceEEEEecC
Q 024411          207 GFIVLDHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEGLESAPAALIGLFSGQ-NVGKQVVAVAP  268 (268)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~~~  268 (268)
                      ++..+      .+.++++++++.+|++  ++.++++|+|+++++||+.+.+++ ..+|+|+++++
T Consensus       293 g~~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          293 SVFRY------CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             ECCSC------SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             Eeccc------hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            86542      2347889999999986  467778999999999999999887 68999998863

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-39  Score=266.20  Aligned_cols=249  Identities=21%  Similarity=0.265  Sum_probs=214.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||++                               .|+|+||++++++.++++ |++++
T Consensus        66 ~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~  144 (347)
T 2hcy_A           66 HEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHI-PQGTD  144 (347)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEE-CTTCC
T ss_pred             ccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEEC-CCCCC
Confidence            4679999999999999999999974                               278999999999999999 99855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      .. ++|++++++.|||+++... +++++++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+
T Consensus       145 ~~-~aa~l~~~~~ta~~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~g~~~~~d~  221 (347)
T 2hcy_A          145 LA-QVAPILCAGITVYKALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDF  221 (347)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HTTCCEEEET
T ss_pred             HH-HHHHHhhhHHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-HcCCceEEec
Confidence            44 3788999999999999654 8999999999999999999999999999999999999988988888 8999888887


Q ss_pred             C-ChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 K-EEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~-~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      . .. ++.+.+++.+.+++|+++|++|. ..+..++++++++|+++.+|...+     .....+...++.+++++.++..
T Consensus       222 ~~~~-~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~~~~~~~~~~~~i~g~~~  295 (347)
T 2hcy_A          222 TKEK-DIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAG-----AKCCSDVFNQVVKSISIVGSYV  295 (347)
T ss_dssp             TTCS-CHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTT-----CEEEEEHHHHHHTTCEEEECCC
T ss_pred             CccH-hHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCC-----CCCCCCHHHHhhCCcEEEEccC
Confidence            7 34 77777877665589999999997 788999999999999999987432     1223455677789999988765


Q ss_pred             cccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ..     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++++
T Consensus       296 ~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          296 GN-----RADTREALDFFARGLVKSPI-KVVGLSTLPEIYEKMEKGQIVGRYVVDTSK  347 (347)
T ss_dssp             CC-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred             CC-----HHHHHHHHHHHHhCCCccce-EEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence            44     57789999999999999865 589999999999999998888999999864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=7.6e-40  Score=271.55  Aligned_cols=245  Identities=20%  Similarity=0.180  Sum_probs=209.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|++|++||||++.                              |+|+||++++++.++++ |+++  
T Consensus        63 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~--  139 (343)
T 2dq4_A           63 HEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVN-PKDL--  139 (343)
T ss_dssp             CEEEEEEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEE-CTTS--
T ss_pred             ccceEEEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEEC-CCCC--
Confidence            57799999999999999999999862                              79999999999999999 9984  


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      +++.|++..++.+||+++...+++ ++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++ +++++++
T Consensus       140 ~~~~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a~~v~~~  215 (343)
T 2dq4_A          140 PFEVAAILEPFGNAVHTVYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-ADRLVNP  215 (343)
T ss_dssp             CHHHHTTHHHHHHHHHHHHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-CSEEECT
T ss_pred             CHHHHHhhhHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-HHhccCc
Confidence            444444446888999999657788 9999999999 9999999999999999 9999999999999998 78 8889998


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccch-HHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL-MYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  210 (268)
                      ++. ++.+.+++.+++++|++||++|+ ..+..++++++++|+++.+|...      .....+. ..++.+++++.|+..
T Consensus       216 ~~~-~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~------~~~~~~~~~~~~~~~~~i~g~~~  288 (343)
T 2dq4_A          216 LEE-DLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPS------DPIRFDLAGELVMRGITAFGIAG  288 (343)
T ss_dssp             TTS-CHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCS------SCEEECHHHHTGGGTCEEEECCS
T ss_pred             Ccc-CHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC------CCceeCcHHHHHhCceEEEEeec
Confidence            876 88888888773389999999998 78899999999999999998742      1223445 567789999988754


Q ss_pred             cccccchHHHHHHHHHHHHcCC--ceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGK--LVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ..    ..+.++++++++.+|+  +++.++++|+++++++|++.+.+++. ||+|++++
T Consensus       289 ~~----~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          289 RR----LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             CC----TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             CC----CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence            31    2567899999999999  46778889999999999999998777 99999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.5e-39  Score=270.63  Aligned_cols=250  Identities=17%  Similarity=0.167  Sum_probs=210.3

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------------ccccceeEeecCC--cceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------------MTGWEEYSLITAP--HLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------~g~~~~~~~v~~~--~~~~~~p   48 (268)
                      -|++|+|+++|++|++|++||||++                                 .|+|+||++++++  .++++ |
T Consensus        59 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~i-P  137 (352)
T 3fpc_A           59 HEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHL-P  137 (352)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEEC-C
T ss_pred             CcceEEEEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEEC-C
Confidence            5679999999999999999999984                                 2899999999986  79999 9


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      ++++.. +++.+++++.|||+++ +.++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++ ++|++
T Consensus       138 ~~~~~~-~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~  213 (352)
T 3fpc_A          138 KEIPLE-AAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL-EYGAT  213 (352)
T ss_dssp             TTSCHH-HHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH-HHTCC
T ss_pred             CCCCHH-HHhhccchhHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCc
Confidence            985544 3677889999999999 6788999999999996 9999999999999999 8999999999999999 99999


Q ss_pred             eeeecCChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccc--hHHHHhcce
Q 024411          128 EAFNYKEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN--LMYLVSKRL  203 (268)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~--~~~~~~~~~  203 (268)
                      +++++++. ++.+.+++.+++ ++|++||++|+ ..+..++++++++|+++.+|...+.    .....+  ......+++
T Consensus       214 ~vi~~~~~-~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~----~~~~~~~~~~~~~~~~~  288 (352)
T 3fpc_A          214 DIINYKNG-DIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEG----DNIDIPRSEWGVGMGHK  288 (352)
T ss_dssp             EEECGGGS-CHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSC----SEEEEETTTTGGGTBCE
T ss_pred             eEEcCCCc-CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCC----CceecchhHhhhhcccc
Confidence            99999887 899999999988 99999999998 7899999999999999999875421    111111  112234667


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceee--eehhcc-cccHHHHHHHHHcCCc-cceEEEEec
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYV--EDMAEG-LESAPAALIGLFSGQN-VGKQVVAVA  267 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~-~~~~~~a~~~~~~~~~-~gkvvi~~~  267 (268)
                      ++.++....    ..+.++++++++.+|++++.  ++++|+ |+++++||+.+.+++. .+|+|++++
T Consensus       289 ~i~g~~~~~----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          289 HIHGGLCPG----GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             EEEEBCCCC----HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             EEEEeeccC----chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            777654422    25678999999999999874  778998 9999999999998654 489999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.7e-39  Score=270.03  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=206.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------------------------cccceeEeecCCcc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------TGWEEYSLITAPHL   43 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------g~~~~~~~v~~~~~   43 (268)
                      -|++|+|+++|++|++|++||+|+..                                        |+|+||++++++.+
T Consensus        64 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~  143 (348)
T 3two_A           64 HEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYV  143 (348)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGC
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhE
Confidence            57799999999999999999999752                                        89999999999999


Q ss_pred             eeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 024411           44 FKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK  123 (268)
Q Consensus        44 ~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~  123 (268)
                      +++ |++++.. ++|++++++.|||+++.+ .+++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ +
T Consensus       144 ~~i-P~~~~~~-~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~  218 (348)
T 3two_A          144 ISV-DKNAPLE-KVAPLLCAGITTYSPLKF-SKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-S  218 (348)
T ss_dssp             EEC-CTTSCHH-HHGGGGTHHHHHHHHHHH-TTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-H
T ss_pred             EEC-CCCCCHH-HhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-h
Confidence            999 9985554 377899999999999965 58999999999997 99999999999999999999999999999999 9


Q ss_pred             cCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHH-hc
Q 024411          124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLV-SK  201 (268)
Q Consensus       124 ~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~  201 (268)
                      +|+++++ .+.. .+        ..++|++||++|+. .+..++++++++|+++.+|.....    +....+...++ .+
T Consensus       219 lGa~~v~-~~~~-~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~  284 (348)
T 3two_A          219 MGVKHFY-TDPK-QC--------KEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVE----VAPVLSVFDFIHLG  284 (348)
T ss_dssp             TTCSEEE-SSGG-GC--------CSCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGG----GCCEEEHHHHHHTC
T ss_pred             cCCCeec-CCHH-HH--------hcCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCC----CcccCCHHHHHhhC
Confidence            9999888 3321 21        11799999999995 999999999999999999874411    11124556667 89


Q ss_pred             ceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          202 RLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ++++.|+....     .+.++++++++.+|++++.+ ++|+++++++||+.+.+++..||+|+++++
T Consensus       285 ~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~  345 (348)
T 3two_A          285 NRKVYGSLIGG-----IKETQEMVDFSIKHNIYPEI-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK  345 (348)
T ss_dssp             SCEEEECCSCC-----HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred             CeEEEEEecCC-----HHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99999987665     56799999999999999866 689999999999999999999999999863

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.4e-40  Score=274.10  Aligned_cols=249  Identities=20%  Similarity=0.267  Sum_probs=209.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------ccccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------MTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV   74 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------~g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~   74 (268)
                      .|++|+|+++|  +++|++||||++         .|+|+||++++++.++++ |++++.. ++|++++.++|||++++..
T Consensus        63 ~E~~G~V~~~G--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al~~~  138 (324)
T 3nx4_A           63 IDFAGTVHASE--DPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVAL-PAGLSSR-NAMIIGTAGFTAMLCVMAL  138 (324)
T ss_dssp             SEEEEEEEEES--STTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEEC-CTTCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEEeC--CCCCCCCCEEEEcccccCCCCCCceeeEEecCHHHcEEC-CCCCCHH-HHHHhhhHHHHHHHHHHHh
Confidence            45689999988  688999999995         389999999999999999 9985554 3788999999999998643


Q ss_pred             --cCCCCCc-EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           75 --CSPKHGE-CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        75 --~~~~~~~-~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                        .++++++ .|||+|++|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+++. +.   +++.+++++|
T Consensus       139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-~~---~~~~~~~~~d  213 (324)
T 3nx4_A          139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK-SLGANRILSRDEF-AE---SRPLEKQLWA  213 (324)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTCSEEEEGGGS-SC---CCSSCCCCEE
T ss_pred             hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEecCCH-HH---HHhhcCCCcc
Confidence              4466632 3999999999999999999999999999999999999999 9999999998764 32   4444555899


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  230 (268)
                      ++|||+|++.+..++++++++|+++.+|...+     .....+...++.+++++.++..... .....+.++++.+++.+
T Consensus       214 ~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  288 (324)
T 3nx4_A          214 GAIDTVGDKVLAKVLAQMNYGGCVAACGLAGG-----FALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPE  288 (324)
T ss_dssp             EEEESSCHHHHHHHHHTEEEEEEEEECCCTTC-----SEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCH
T ss_pred             EEEECCCcHHHHHHHHHHhcCCEEEEEecCCC-----CCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999987542     1223455677889999999875443 23345778999999999


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      |++++. +++|+++++++||+.+.+++..||+|++++
T Consensus       289 g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          289 SFYAQA-ATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             HHHHHH-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             CCCCCC-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            999987 889999999999999999999999999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.4e-38  Score=263.12  Aligned_cols=257  Identities=45%  Similarity=0.735  Sum_probs=213.3

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeecCCC----CCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTD----VPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~----~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      +++|+|++  +++++|++||||++.|+|+||++++.+.++++ |++    ++....+|+++++++|||+++.+.++++++
T Consensus        70 e~~G~Vv~--~~v~~~~vGdrV~~~g~~aey~~v~~~~~~~i-P~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g  146 (333)
T 1v3u_A           70 QQVARVVE--SKNSAFPAGSIVLAQSGWTTHFISDGKGLEKL-LTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGG  146 (333)
T ss_dssp             CEEEEEEE--ESCTTSCTTCEEEECCCSBSEEEESSTTEEEC-C--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSS
T ss_pred             ceEEEEEe--cCCCCCCCCCEEEecCceEEEEEechHHeEEc-CcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCC
Confidence            44555555  57889999999999999999999999999999 886    555532589999999999999888899999


Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-hhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE-EADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++||+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+ . ++.+.+.+.+.+++|+++|++|.
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~~-~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVN-SLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTSCS-CHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCcEEEecCCHH-HHHHHHHHHhCCCCeEEEECCCh
Confidence            99999999999999999999999999999999999999887 899988888876 5 78888888776689999999999


Q ss_pred             hhHHhHHHhhhcCCEEEEEcccccccCCC-CccccchHHHHhcceeeeeEEecccc-cchHHHHHHHHHHHHcCCceeee
Q 024411          160 KLLDAVLPNMKIRGRIAACGMISQYNLDK-PEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVE  237 (268)
Q Consensus       160 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~  237 (268)
                      ..+..++++++++|+++.+|...+..... +....+...++.+++++.|+....+. ....+.++++++++.+|++++.+
T Consensus       225 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  304 (333)
T 1v3u_A          225 EFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE  304 (333)
T ss_dssp             HHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE
T ss_pred             HHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc
Confidence            88999999999999999998754321000 11112456778899999987665432 33467889999999999999887


Q ss_pred             ehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          238 DMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       238 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ..+++|+++++||+.+.+++..||+|+++
T Consensus       305 ~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          305 HVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             EEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            77889999999999999988889999874

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.3e-38  Score=264.58  Aligned_cols=246  Identities=20%  Similarity=0.266  Sum_probs=213.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecC-CcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITA-PHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~-~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++|++|++||||+++                              |+|+||+++++ +.++++  ++++
T Consensus        68 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i--~~~~  145 (347)
T 1jvb_A           68 HEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL--RRLN  145 (347)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC--SSSC
T ss_pred             ccceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe--CCCC
Confidence            46799999999999999999999752                              78999999999 999999  4543


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. +++++++++.|||+++.. ++++++++|||+|++|++|++++|+++.. |++|+++++++++.+.++ ++|++++++
T Consensus       146 ~~-~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~  222 (347)
T 1jvb_A          146 AV-EAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVIN  222 (347)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEE
T ss_pred             HH-HcccchhhHHHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCEEec
Confidence            33 377899999999999954 78999999999999779999999999999 999999999999999998 899998999


Q ss_pred             cCChhhHHHHHHHHCC-CCccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEADLNAALKRYFP-EGIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +.+. ++.+.+.+.+. +++|+++|++|+. .+..++++++++|+++.+|....    .+  ..+...++.+++++.++.
T Consensus       223 ~~~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~----~~--~~~~~~~~~~~~~i~g~~  295 (347)
T 1jvb_A          223 ASMQ-DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA----DL--HYHAPLITLSEIQFVGSL  295 (347)
T ss_dssp             TTTS-CHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC----CC--CCCHHHHHHHTCEEEECC
T ss_pred             CCCc-cHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCC----CC--CCCHHHHHhCceEEEEEe
Confidence            8876 77778888776 5899999999985 88999999999999999987431    11  345556778899998876


Q ss_pred             ecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ...     .+.++++++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       296 ~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          296 VGN-----QSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             SCC-----HHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             ccC-----HHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            544     6789999999999999999889999999999999999988889999974

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.3e-39  Score=270.71  Aligned_cols=245  Identities=17%  Similarity=0.126  Sum_probs=207.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-------------------------------ccccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-------------------------------MTGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-------------------------------~g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      .|++|+|+++|++|++|++||||++                               .|+|+||++++++.++++ |+ ++
T Consensus        78 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~i-P~-~s  155 (363)
T 3m6i_A           78 HESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI-GN-MS  155 (363)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEEC-TT-CC
T ss_pred             cceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEEC-CC-CC
Confidence            5779999999999999999999985                               289999999999999999 88 65


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      .. ++|.+ .++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|++ |+++++++++.+.++ ++ ++.+++
T Consensus       156 ~~-~aa~~-~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~~~~~~  229 (363)
T 3m6i_A          156 YE-NGAML-EPLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-CPEVVT  229 (363)
T ss_dssp             HH-HHHHH-HHHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-CTTCEE
T ss_pred             HH-HHHhh-hHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-chhccc
Confidence            55 34544 6889999999 6788999999999998 99999999999999996 999999999999999 88 666665


Q ss_pred             cC----ChhhHHHHHHHHCCC-CccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          132 YK----EEADLNAALKRYFPE-GIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       132 ~~----~~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      +.    ..+++.+.+++.+++ ++|++|||+|+. .+..++++++++|+++.+|...+      ....+...++.+++++
T Consensus       230 ~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i  303 (363)
T 3m6i_A          230 HKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKN------EIQIPFMRASVREVDL  303 (363)
T ss_dssp             EECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCS------CCCCCHHHHHHHTCEE
T ss_pred             ccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCC------CccccHHHHHhcCcEE
Confidence            53    122788899999877 999999999985 78999999999999999987432      2234566788899998


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCCc--eeeeehhcccccHHHHHHHHHcC-CccceEEEEecC
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGKL--VYVEDMAEGLESAPAALIGLFSG-QNVGKQVVAVAP  268 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~~~~  268 (268)
                      .++..+      .+.++++++++.+|++  ++.++++|+|+++++||+.+.++ ...+|+|++.++
T Consensus       304 ~g~~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          304 QFQYRY------CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             EECCSC------SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             EEccCC------HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            886543      3457889999999998  56688899999999999999987 677899998864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=4.8e-39  Score=267.29  Aligned_cols=253  Identities=21%  Similarity=0.193  Sum_probs=209.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++|+++++||+|++.                              |+|+||++++++.++++ |++++.
T Consensus        59 ~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~l~~  137 (346)
T 4a2c_A           59 HEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL-PTDMPI  137 (346)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEEC-CTTSCG
T ss_pred             EEEEEEEEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEEC-CCCCCH
Confidence            46799999999999999999999752                              78999999999999999 999544


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                        +.|++..+..++++++ ...+++++++|||+|+ |++|++++|+|+.+|++ ++++++++++.+.++ ++|+++++|+
T Consensus       138 --~~aa~l~~~~~~~~~~-~~~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~-~lGa~~~i~~  212 (346)
T 4a2c_A          138 --EDGAFIEPITVGLHAF-HLAQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFNS  212 (346)
T ss_dssp             --GGGGGHHHHHHHHHHH-HHTTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEET
T ss_pred             --HHHHhchHHHHHHHHH-HHhccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHHH-HcCCeEEEeC
Confidence              4343444555555555 6678999999999997 99999999999999994 577788999999999 9999999999


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      ++. +..+.++..+.+ ++|+++|++|. ..+..++++++++|+++.+|...+.   ......++..++.+++++.|+..
T Consensus       213 ~~~-~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~k~~~i~G~~~  288 (346)
T 4a2c_A          213 SEM-SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQD---LHLTSATFGKILRKELTVIGSWM  288 (346)
T ss_dssp             TTS-CHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSC---EEECHHHHHHHHHHTCEEEECCT
T ss_pred             CCC-CHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCC---ccccccCHHHHhhceeEEEEEec
Confidence            987 788888888776 89999999997 7889999999999999999875421   11123345667889999999765


Q ss_pred             cccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          211 LDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ........+.++++++++.+|+++  +.++++|+|+++++||+.+.+++..||+|+.+
T Consensus       289 ~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          289 NYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             TCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             cccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            443333457789999999999874  56888999999999999999999999999853

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.7e-39  Score=268.30  Aligned_cols=243  Identities=19%  Similarity=0.220  Sum_probs=206.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------------------ccccceeEeecCCcce
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------------------MTGWEEYSLITAPHLF   44 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------------~g~~~~~~~v~~~~~~   44 (268)
                      -|++|+|+++|++|++|++||||++                                       .|+|+||++++++.++
T Consensus        82 hE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~  161 (369)
T 1uuf_A           82 HEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVL  161 (369)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCE
T ss_pred             cCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEE
Confidence            4779999999999999999999973                                       1789999999999999


Q ss_pred             eecCCC-CCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 024411           45 KIQHTD-VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK  123 (268)
Q Consensus        45 ~~~p~~-~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~  123 (268)
                      ++ |++ ++.. ++|++++++.|||+++.. .+++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ +
T Consensus       162 ~~-P~~~ls~~-~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~  236 (369)
T 1uuf_A          162 RI-RHPQEQLA-AVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-A  236 (369)
T ss_dssp             EC-CSCGGGHH-HHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-H
T ss_pred             EC-CCCCCCHH-HhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H
Confidence            99 888 7765 478899999999999976 58999999999998 99999999999999999999999999999999 8


Q ss_pred             cCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcc
Q 024411          124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKR  202 (268)
Q Consensus       124 ~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  202 (268)
                      +|+++++++++. ++.+   +.. +++|++||++|. ..+..++++++++|+++.+|...+.     ....+...++.++
T Consensus       237 lGa~~vi~~~~~-~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~  306 (369)
T 1uuf_A          237 LGADEVVNSRNA-DEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-----HKSPEVFNLIMKR  306 (369)
T ss_dssp             HTCSEEEETTCH-HHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTT
T ss_pred             cCCcEEeccccH-HHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCC-----ccccCHHHHHhCC
Confidence            999999998875 4433   222 479999999998 5789999999999999999874321     1124455677899


Q ss_pred             eeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          203 LRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +++.++....     .+.++++++++.+|++++.+. .|+|+++++|++.+.+++..||+|++++
T Consensus       307 ~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~~~gKvvi~~~  365 (369)
T 1uuf_A          307 RAIAGSMIGG-----IPETQEMLDFCAEHGIVADIE-MIRADQINEAYERMLRGDVKYRFVIDNR  365 (369)
T ss_dssp             CEEEECCSCC-----HHHHHHHHHHHHHHTCCCCEE-EECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred             cEEEEeecCC-----HHHHHHHHHHHHhCCCCcceE-EEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence            9999876544     567899999999999998775 6999999999999999888899999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.4e-40  Score=273.00  Aligned_cols=238  Identities=17%  Similarity=0.175  Sum_probs=188.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSP   77 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~   77 (268)
                      -|++|+|+++|++|++|++||||++.      |+|+||++++++.++++ |++++.. ++|+++++++|||+++ +.+++
T Consensus        64 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~al-~~~~~  140 (315)
T 3goh_A           64 VDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTL-PDNLSFE-RAAALPCPLLTAWQAF-EKIPL  140 (315)
T ss_dssp             SEEEEEEEEECTTSCGGGTTCEEEEECCTTSCCSSBSEEEEETTSEEEC-CTTSCHH-HHHTSHHHHHHHHHHH-TTSCC
T ss_pred             eeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCcccccEEEEcHHHhccC-cCCCCHH-HHhhCccHHHHHHHHH-hhcCC
Confidence            56789999999999999999999984      89999999999999999 9985444 3778999999999999 78899


Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +++++|||+|+ |++|++++|+|+.+|++|++++ ++++.+.++ ++|++++++ + .    +.+    ++++|++|||+
T Consensus       141 ~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~-d-~----~~v----~~g~Dvv~d~~  207 (315)
T 3goh_A          141 TKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA-KRGVRHLYR-E-P----SQV----TQKYFAIFDAV  207 (315)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH-HHTEEEEES-S-G----GGC----CSCEEEEECC-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH-HcCCCEEEc-C-H----HHh----CCCccEEEECC
Confidence            99999999999 9999999999999999999999 889999998 999988884 1 1    122    44899999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-----cc---chHHHHHHHHHHHH
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-----YH---LYPKFLEMIIPHIK  229 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~  229 (268)
                      |++.+..++++++++|+++.+|.....         .....+.+.+.+........     +.   ...+.+++++++++
T Consensus       208 g~~~~~~~~~~l~~~G~~v~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (315)
T 3goh_A          208 NSQNAAALVPSLKANGHIICIQDRIPA---------PIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIA  278 (315)
T ss_dssp             ------TTGGGEEEEEEEEEECCC-------------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHhcCCCEEEEEeCCCCc---------cccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHH
Confidence            997778999999999999999753210         01112233444444333221     11   23456889999999


Q ss_pred             cCCceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          230 EGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       230 ~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      +|++++.++++|+|+++++||+.+.  +..||+|+++++
T Consensus       279 ~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~  315 (315)
T 3goh_A          279 QGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE  315 (315)
T ss_dssp             TTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred             CCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence            9999999999999999999999998  777899999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2e-38  Score=263.06  Aligned_cols=240  Identities=20%  Similarity=0.200  Sum_probs=189.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeec-CCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLIT-APHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~-~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++ ++|++||||+++                              |+|+||++++ ++.++++  ++++
T Consensus        65 ~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i--~~l~  141 (344)
T 2h6e_A           65 HENAGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL--NSLS  141 (344)
T ss_dssp             CCEEEEEEEECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE--SSSC
T ss_pred             ccceEEEEEECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe--CCCC
Confidence            4779999999999 999999999752                              7899999999 9999999  5544


Q ss_pred             chhhhhhccchHHHHHHHhhhh----cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC
Q 024411           53 LSYYTGILGMPGMTAYVGFYEV----CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~----~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~  126 (268)
                      .. ++|++++++.|||+++...    +++ ++++|||+|+ |++|++++|+|+.+  |++|+++++++++.+.++ ++|+
T Consensus       142 ~~-~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~lGa  217 (344)
T 2h6e_A          142 PV-EAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELGA  217 (344)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHTC
T ss_pred             HH-HhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-HhCC
Confidence            43 3778999999999999765    378 9999999999 99999999999999  999999999999999998 8999


Q ss_pred             CeeeecCC-hhhHHHHHHHHCCC-CccEEEeCCChh-hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcce
Q 024411          127 DEAFNYKE-EADLNAALKRYFPE-GIDIYFENVGGK-LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRL  203 (268)
Q Consensus       127 ~~v~~~~~-~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  203 (268)
                      ++++++++ . ++.   .+.+.+ ++|++||++|.. .+..++++++++|+++.+|...+      ....+...++.+++
T Consensus       218 ~~vi~~~~~~-~~~---~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~  287 (344)
T 2h6e_A          218 DYVSEMKDAE-SLI---NKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGK------RVSLEAFDTAVWNK  287 (344)
T ss_dssp             SEEECHHHHH-HHH---HHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHHHTTC
T ss_pred             CEEeccccch-HHH---HHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCC------CcccCHHHHhhCCc
Confidence            99998765 3 433   344445 899999999985 89999999999999999987432      12345566778999


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++.++...+     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       288 ~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          288 KLLGSNYGS-----LNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             EEEECCSCC-----HHHHHHHHHHHHTTSSCCCE-EEECC----------------CEEEECC
T ss_pred             EEEEEecCC-----HHHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            998876543     67899999999999999988 8999999999999999888889999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=5.9e-39  Score=267.82  Aligned_cols=243  Identities=17%  Similarity=0.147  Sum_probs=206.6

Q ss_pred             CccceEEEEecCCCC-CCCCCCeEE-----------------------------------e---ccccceeEeecCCcce
Q 024411            4 ISGYGVAKVLDSENP-EFNKGDLVW-----------------------------------G---MTGWEEYSLITAPHLF   44 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~-~~~~Gd~V~-----------------------------------~---~g~~~~~~~v~~~~~~   44 (268)
                      -|++|+|+++|++|+ +|++||||+                                   +   .|+|+||++++++.++
T Consensus        68 hE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~  147 (360)
T 1piw_A           68 HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVV  147 (360)
T ss_dssp             CCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEE
T ss_pred             cCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheE
Confidence            477999999999999 999999993                                   2   1789999999999999


Q ss_pred             eecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 024411           45 KIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF  124 (268)
Q Consensus        45 ~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~  124 (268)
                      ++ |++++.. ++|++++++.|||+++.. ++++++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.++ ++
T Consensus       148 ~i-P~~~~~~-~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l  222 (360)
T 1piw_A          148 PI-PENIPSH-LAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM  222 (360)
T ss_dssp             EC-CTTSCHH-HHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH
T ss_pred             EC-CCCCCHH-HhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc
Confidence            99 9985544 378899999999999976 78999999999999 99999999999999999999999999999999 89


Q ss_pred             CCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh---hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhc
Q 024411          125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG---KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSK  201 (268)
Q Consensus       125 g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  201 (268)
                      |+++++++++..++.+.+.    +++|++||++|.   ..+..++++++++|+++.+|...+  .    ...+...++.+
T Consensus       223 Ga~~v~~~~~~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~--~----~~~~~~~~~~~  292 (360)
T 1piw_A          223 GADHYIATLEEGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ--H----EMLSLKPYGLK  292 (360)
T ss_dssp             TCSEEEEGGGTSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS--S----CCEEECGGGCB
T ss_pred             CCCEEEcCcCchHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC--c----cccCHHHHHhC
Confidence            9999998864202333222    579999999997   678899999999999999987432  1    02334456778


Q ss_pred             ceeeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhccccc--HHHHHHHHHcCCccceEEEEec
Q 024411          202 RLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLES--APAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ++++.++...+     .+.++++++++.+|++++.+ ++|++++  +++||+.+.+++..||+|++++
T Consensus       293 ~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~  354 (360)
T 1piw_A          293 AVSISYSALGS-----IKELNQLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  354 (360)
T ss_dssp             SCEEEECCCCC-----HHHHHHHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             CeEEEEEecCC-----HHHHHHHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHHCCCCceEEEEecC
Confidence            88888876544     67789999999999999888 8999999  9999999999888899999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.6e-39  Score=268.92  Aligned_cols=256  Identities=22%  Similarity=0.289  Sum_probs=203.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcC-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCS-   76 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~-   76 (268)
                      -|++|+|+++|++|++|++||+|++.      |+|+||++++++.++++ |++++.. ++|+++++++|||+++.+.++ 
T Consensus       100 ~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~i-P~~ls~~-~Aa~l~~~~~tA~~al~~~~~~  177 (375)
T 2vn8_A          100 RDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHK-PKSLTHT-QAASLPYVALTAWSAINKVGGL  177 (375)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEEC-CTTSCHH-HHTTSHHHHHHHHHHHTTTTCC
T ss_pred             eeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeC-CCCCCHH-HHhhhHHHHHHHHHHHHHhccc
Confidence            46799999999999999999999983      89999999999999999 9985554 377888889999999987788 


Q ss_pred             ---CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           77 ---PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        77 ---~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                         ++++++|||+||+|++|++++|+|+..|++|++++ ++++.+.++ ++|++.++|+++. ++.+.+.+.  +++|++
T Consensus       178 ~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~~~~~-~~~~~~~~~--~g~D~v  252 (375)
T 2vn8_A          178 NDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR-KLGADDVIDYKSG-SVEEQLKSL--KPFDFI  252 (375)
T ss_dssp             CTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEETTSS-CHHHHHHTS--CCBSEE
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH-HcCCCEEEECCch-HHHHHHhhc--CCCCEE
Confidence               89999999999889999999999999999999998 678889998 9999999999876 777777653  479999


Q ss_pred             EeCCChh--hHHhHHHhhhcCCEEEEEcccccccCCCCccccch----HHHHhcce-ee-eeEEe-cccccchHHHHHHH
Q 024411          154 FENVGGK--LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL----MYLVSKRL-RM-EGFIV-LDHYHLYPKFLEMI  224 (268)
Q Consensus       154 ~d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~----~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~  224 (268)
                      |||+|+.  .+..++++++++|+++.+|...............+    ..++.+++ ++ .+... +.+.....+.++++
T Consensus       253 id~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  332 (375)
T 2vn8_A          253 LDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDI  332 (375)
T ss_dssp             EESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHH
T ss_pred             EECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEeCCCHHHHHHH
Confidence            9999986  45899999999999999986432100000000000    12223322 11 22221 11112235778999


Q ss_pred             HHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          225 IPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       225 ~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      ++++.+|++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       333 ~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          333 AELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            999999999999999999999999999999988889999975

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.9e-38  Score=263.28  Aligned_cols=243  Identities=20%  Similarity=0.218  Sum_probs=205.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      -|++|+|+++|++|++|++||||+.                                      .|+|+||++++++.+++
T Consensus        69 hE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~  148 (357)
T 2cf5_A           69 HEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVK  148 (357)
T ss_dssp             CEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEE
T ss_pred             cceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEE
Confidence            4679999999999999999999973                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcCCC-CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK-HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF  124 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~-~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~  124 (268)
                      + |++++.. ++|++++++.|||+++.. .+++ ++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.+++++
T Consensus       149 ~-P~~ls~~-~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l  224 (357)
T 2cf5_A          149 I-PEGMAVE-QAAPLLCAGVTVYSPLSH-FGLKQPGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL  224 (357)
T ss_dssp             C-CSSCCHH-HHTGGGTHHHHHHHHHHH-TSTTSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS
T ss_pred             C-cCCCCHH-HhhhhhhhHHHHHHHHHh-cCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc
Confidence            9 9885544 378899999999999965 5788 9999999996 99999999999999999999999988888876689


Q ss_pred             CCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcce
Q 024411          125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRL  203 (268)
Q Consensus       125 g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  203 (268)
                      |+++++++++. +   .+++.+ +++|++||++|. ..+..++++++++|+++.+|...+     +....+.. ++.+++
T Consensus       225 Ga~~vi~~~~~-~---~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~-~~~~~~  293 (357)
T 2cf5_A          225 GADDYVIGSDQ-A---KMSELA-DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINN-----PLQFLTPL-LMLGRK  293 (357)
T ss_dssp             CCSCEEETTCH-H---HHHHST-TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSS-----CCCCCHHH-HHHHTC
T ss_pred             CCceeeccccH-H---HHHHhc-CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCC-----CccccCHH-HHhCcc
Confidence            99999988753 2   344444 379999999998 578999999999999999987432     11113344 778899


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ++.++....     .+.++++++++++|++++.+ ++|+++++++||+.+.+++..||+|++++
T Consensus       294 ~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  351 (357)
T 2cf5_A          294 VITGSFIGS-----MKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFERLEKNDVRYRFVVDVE  351 (357)
T ss_dssp             EEEECCSCC-----HHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHHHHHTTCSSSEEEEETT
T ss_pred             EEEEEccCC-----HHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHHHHHCCCCceEEEEeCC
Confidence            998876544     56789999999999999876 58999999999999999888899999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=6.3e-39  Score=271.38  Aligned_cols=245  Identities=19%  Similarity=0.211  Sum_probs=210.7

Q ss_pred             CccceEEEEecCCC------CCCCCCCeEEe------------------------------ccccceeEeecCCcceeec
Q 024411            4 ISGYGVAKVLDSEN------PEFNKGDLVWG------------------------------MTGWEEYSLITAPHLFKIQ   47 (268)
Q Consensus         4 ~~~~G~v~~vG~~v------~~~~~Gd~V~~------------------------------~g~~~~~~~v~~~~~~~~~   47 (268)
                      -|++|+|+++|++|      ++|++||||++                              .|+|+||++++++.++++ 
T Consensus        97 ~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~i-  175 (404)
T 3ip1_A           97 HEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSL-  175 (404)
T ss_dssp             CEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEC-
T ss_pred             ccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEec-
Confidence            46799999999999      88999999986                              289999999999999999 


Q ss_pred             CCCCCc-----hhhhhhccchHHHHHHHhhhh-cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Q 024411           48 HTDVPL-----SYYTGILGMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLL  120 (268)
Q Consensus        48 p~~~~~-----~~~~a~l~~~~~~a~~~l~~~-~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~  120 (268)
                      |++++.     ..++|+++.+++|||+++... ++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.+
T Consensus       176 P~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  254 (404)
T 3ip1_A          176 RELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA  254 (404)
T ss_dssp             GGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             cccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            877532     234789999999999999755 48999999999998 9999999999999999 999999999999999


Q ss_pred             HHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChh--hHHhHHHhh----hcCCEEEEEcccccccCCCCcccc
Q 024411          121 KNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGK--LLDAVLPNM----KIRGRIAACGMISQYNLDKPEGVH  193 (268)
Q Consensus       121 ~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~  193 (268)
                      + ++|+++++++++. ++.+.+++.+++ ++|++|||+|+.  .+..+.+++    +++|+++.+|...+      ....
T Consensus       255 ~-~lGa~~vi~~~~~-~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~------~~~~  326 (404)
T 3ip1_A          255 K-ELGADHVIDPTKE-NFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA------KIPL  326 (404)
T ss_dssp             H-HHTCSEEECTTTS-CHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCS------CEEE
T ss_pred             H-HcCCCEEEcCCCC-CHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCC------CCcc
Confidence            9 9999999999887 899999999988 999999999986  677787888    99999999998542      2245


Q ss_pred             chHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--eeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          194 NLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--YVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      +...++.+++++.|+....    ..+.++++++++.+| ++  +.++++|+|+++++||+.+.    .||+|++++
T Consensus       327 ~~~~~~~~~~~i~g~~~~~----~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~  393 (404)
T 3ip1_A          327 TGEVFQVRRAQIVGSQGHS----GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVT  393 (404)
T ss_dssp             CHHHHHHTTCEEEECCCCC----STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEE
T ss_pred             cHHHHhccceEEEEecCCC----chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecC
Confidence            6777888999999876432    145688999999999 64  56778999999999999997    578887764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=5.3e-39  Score=271.46  Aligned_cols=252  Identities=19%  Similarity=0.218  Sum_probs=210.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe-----------------------------------------ccccceeEeecCC-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG-----------------------------------------MTGWEEYSLITAP-   41 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~-----------------------------------------~g~~~~~~~v~~~-   41 (268)
                      -|++|+|+++|++|++|++||||++                                         .|+|+||++++++ 
T Consensus        66 hE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~  145 (398)
T 2dph_A           66 HEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYAD  145 (398)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHH
T ss_pred             CceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEecccc
Confidence            4779999999999999999999984                                         2789999999987 


Q ss_pred             -cceeecCCCCCchh---hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH
Q 024411           42 -HLFKIQHTDVPLSY---YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK  116 (268)
Q Consensus        42 -~~~~~~p~~~~~~~---~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~  116 (268)
                       .++++ |++++...   .+|+++++++|||+++ ..++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++
T Consensus       146 ~~~~~i-P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          146 YMLLKF-GDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHCEEC-SSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             CeEEEC-CCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence             79999 88843331   1578899999999999 5789999999999997 9999999999999999 99999999999


Q ss_pred             HHHHHHhcCCCeeeecCChhhH-HHHHHHHCCC-CccEEEeCCChh---------------hHHhHHHhhhcCCEEEEEc
Q 024411          117 VDLLKNKFGFDEAFNYKEEADL-NAALKRYFPE-GIDIYFENVGGK---------------LLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       117 ~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~-~~d~v~d~~g~~---------------~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+.++ ++|++ ++++++. ++ .+.+++.+++ ++|++||++|+.               .+..++++++++|+++.+|
T Consensus       223 ~~~a~-~lGa~-~i~~~~~-~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          223 LKLLS-DAGFE-TIDLRNS-APLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHHHH-TTTCE-EEETTSS-SCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HHHHH-HcCCc-EEcCCCc-chHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            99999 99995 8888775 65 7888888877 899999999974               5889999999999999998


Q ss_pred             ccccccCC-------CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce--e--eeehhcccccHHH
Q 024411          180 MISQYNLD-------KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV--Y--VEDMAEGLESAPA  248 (268)
Q Consensus       180 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~--~~~~~~~~~~~~~  248 (268)
                      ........       ......+...++.+++++.++....     .+.++++++++.+|+++  +  .++++|+|+++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~  374 (398)
T 2dph_A          300 IYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPV-----TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPD  374 (398)
T ss_dssp             CCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCG-----GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHH
T ss_pred             cccccccccccccccCCcccccHHHHhhcCCEEEEeccCc-----HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHH
Confidence            75210000       0112345566788899888754322     45688999999999998  6  5778999999999


Q ss_pred             HHHHHHcCCccceEEEEec
Q 024411          249 ALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       249 a~~~~~~~~~~gkvvi~~~  267 (268)
                      ||+.+.+++. +|+|++++
T Consensus       375 A~~~~~~~~~-gKvvv~~~  392 (398)
T 2dph_A          375 GYAKFDKGSP-AKFVIDPH  392 (398)
T ss_dssp             HHHHHHTTCS-CEEEECTT
T ss_pred             HHHHHhcCCc-eEEEEecC
Confidence            9999998887 99999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.1e-38  Score=265.13  Aligned_cols=253  Identities=19%  Similarity=0.176  Sum_probs=207.6

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe----------------------------------------ccccceeEeecCC--
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG----------------------------------------MTGWEEYSLITAP--   41 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~----------------------------------------~g~~~~~~~v~~~--   41 (268)
                      -|++|+|+++|++|++|++||||++                                        .|+|+||++++++  
T Consensus        67 hE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~  146 (398)
T 1kol_A           67 HEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADF  146 (398)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHH
T ss_pred             cccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhC
Confidence            4779999999999999999999973                                        1789999999987  


Q ss_pred             cceeecCCCCCchh---hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Q 024411           42 HLFKIQHTDVPLSY---YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKV  117 (268)
Q Consensus        42 ~~~~~~p~~~~~~~---~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~  117 (268)
                      .++++ |++++...   .++++++++.|||+++. .++++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.
T Consensus       147 ~~~~~-P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          147 NLLKL-PDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HCEEC-SCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             eEEEC-CCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence            79999 88733321   15789999999999996 678999999999996 9999999999999999 799999999999


Q ss_pred             HHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChh----------------hHHhHHHhhhcCCEEEEEcc
Q 024411          118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGK----------------LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       118 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~----------------~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++ ++|++ ++++++.+.+.+.+++.+++ ++|++||++|+.                .+..++++++++|+++.+|.
T Consensus       224 ~~a~-~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          224 AHAK-AQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             HHHH-HTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHHH-HcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            9998 99996 78887641378888888877 899999999974                68899999999999999986


Q ss_pred             cc-cccCC------CCccccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCCce---eeeehhcccccHHHHH
Q 024411          181 IS-QYNLD------KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV---YVEDMAEGLESAPAAL  250 (268)
Q Consensus       181 ~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~---~~~~~~~~~~~~~~a~  250 (268)
                      .. +....      ......++..++.+++++.+...     ...+.++++++++.+|+++   +.++++|+|+++++||
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~  376 (398)
T 1kol_A          302 YVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT-----PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGY  376 (398)
T ss_dssp             CCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC-----CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHH
T ss_pred             ccCCcccccccccccccccccHHHHhhcccEEEeccc-----ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHH
Confidence            41 11000      00123445566778888876432     2256788999999999998   4567899999999999


Q ss_pred             HHHHcCCccceEEEEec
Q 024411          251 IGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       251 ~~~~~~~~~gkvvi~~~  267 (268)
                      +.+.+++. +|+|++++
T Consensus       377 ~~~~~~~~-gKvvi~~~  392 (398)
T 1kol_A          377 GEFDAGVP-KKFVIDPH  392 (398)
T ss_dssp             HHHHHTCS-CEEEECTT
T ss_pred             HHHhCCCc-eEEEEEeC
Confidence            99998877 99999874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.1e-37  Score=260.57  Aligned_cols=243  Identities=17%  Similarity=0.163  Sum_probs=206.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe--------------------------------------ccccceeEeecCCccee
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG--------------------------------------MTGWEEYSLITAPHLFK   45 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~--------------------------------------~g~~~~~~~v~~~~~~~   45 (268)
                      -|++|+|+++|++|++|++||||+.                                      .|+|+||++++++.+++
T Consensus        76 hE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~  155 (366)
T 1yqd_A           76 HEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIR  155 (366)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEE
T ss_pred             cceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEE
Confidence            4779999999999999999999973                                      27899999999999999


Q ss_pred             ecCCCCCchhhhhhccchHHHHHHHhhhhcCCC-CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 024411           46 IQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK-HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF  124 (268)
Q Consensus        46 ~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~-~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~  124 (268)
                      + |++++.. ++|++++++.|||+++.. .++. ++++|||+|+ |++|++++|+|+.+|++|+++++++++.+.+.+++
T Consensus       156 ~-P~~ls~~-~aa~l~~~~~ta~~al~~-~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l  231 (366)
T 1yqd_A          156 F-PDNMPLD-GGAPLLCAGITVYSPLKY-FGLDEPGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF  231 (366)
T ss_dssp             C-CTTSCTT-TTGGGGTHHHHHHHHHHH-TTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS
T ss_pred             C-CCCCCHH-HhhhhhhhHHHHHHHHHh-cCcCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            9 9985554 378899999999999965 4677 9999999997 99999999999999999999999999888876589


Q ss_pred             CCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcce
Q 024411          125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRL  203 (268)
Q Consensus       125 g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  203 (268)
                      |+++++++.+. +   .+++.+ +++|++||++|. ..+..++++++++|+++.+|...+      ....+...++.+++
T Consensus       232 Ga~~v~~~~~~-~---~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~  300 (366)
T 1yqd_A          232 GADSFLVSRDQ-E---QMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEK------PLELPAFSLIAGRK  300 (366)
T ss_dssp             CCSEEEETTCH-H---HHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSS------CEEECHHHHHTTTC
T ss_pred             CCceEEeccCH-H---HHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCC------CCCcCHHHHHhCCc
Confidence            99999988763 2   344444 379999999998 578999999999999999987431      12345567788999


Q ss_pred             eeeeEEecccccchHHHHHHHHHHHHcCCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          204 RMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      ++.++....     .+.++++++++.+|++++.+ ++|+|+++++||+.+.+++..||+|++++
T Consensus       301 ~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          301 IVAGSGIGG-----MKETQEMIDFAAKHNITADI-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             EEEECCSCC-----HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             EEEEecCCC-----HHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence            998876544     56788999999999999877 58999999999999999888899999763

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=3.2e-39  Score=270.85  Aligned_cols=251  Identities=16%  Similarity=0.162  Sum_probs=209.0

Q ss_pred             CccceEEEEecCCC-CCCCCCCeEEec--cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCC
Q 024411            4 ISGYGVAKVLDSEN-PEFNKGDLVWGM--TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG   80 (268)
Q Consensus         4 ~~~~G~v~~vG~~v-~~~~~Gd~V~~~--g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~   80 (268)
                      .|++|+|+++|++| ++|++||+|++.  |+|+||++++++.++++ |++++.. ++|++++..+|||+++... . +++
T Consensus        96 ~e~~G~V~~vG~~v~~~~~vGdrV~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~~~~~-~-~~g  171 (379)
T 3iup_A           96 NEGAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLVL-PEGATPA-DGASSFVNPLTALGMVETM-R-LEG  171 (379)
T ss_dssp             SCEEEEEEEECSSHHHHTTTTCEEEECCSCCSBSEEEEEGGGEEEC-CTTCCHH-HHTTSSHHHHHHHHHHHHH-H-HTT
T ss_pred             eeeEEEEEEeCCCcccCCCCCCEEEecCCCcceeEEEeCHHHeEEC-CCCCCHH-HHHhhhhhHHHHHHHHHHh-c-cCC
Confidence            57799999999999 889999999998  99999999999999999 9985554 3788899999999888554 4 899


Q ss_pred             cEEEEec-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           81 ECVFISA-ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~g-a~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      ++|||+| |+|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+++. ++.+.+++.+++ ++|++|||+|
T Consensus       172 ~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~-~~~~~v~~~t~~~g~d~v~d~~g  249 (379)
T 3iup_A          172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQGAVHVCNAASP-TFMQDLTEALVSTGATIAFDATG  249 (379)
T ss_dssp             CSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HTTCSCEEETTST-THHHHHHHHHHHHCCCEEEESCE
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCcEEEeCCCh-HHHHHHHHHhcCCCceEEEECCC
Confidence            9999996 7899999999999999999999999999999999 9999999999987 899999998877 9999999999


Q ss_pred             h-hhHHhHHHhhhc-----C-----------CEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-----ccc
Q 024411          159 G-KLLDAVLPNMKI-----R-----------GRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-----YHL  216 (268)
Q Consensus       159 ~-~~~~~~~~~l~~-----~-----------G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  216 (268)
                      + ..+..+++++++     +           |+++.+|.....       ...+...+.+++++.|+....+     +..
T Consensus       250 ~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~-------~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  322 (379)
T 3iup_A          250 GGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS-------PTEFNRNFGMAWGMGGWLLFPFLQKIGRER  322 (379)
T ss_dssp             EESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEE-------EEEECCCSCSCEEEEECCHHHHHHHHCHHH
T ss_pred             chhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCC-------ccccccccccceEEEEEEeeeecccCCHHH
Confidence            8 566888888864     4           566666553321       1222334567888888776544     222


Q ss_pred             hHHHHHHHHHHHHcCCceeeeehhcccccH--HHHHHHHHcCCccceEEEEecC
Q 024411          217 YPKFLEMIIPHIKEGKLVYVEDMAEGLESA--PAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       217 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~--~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ..+.++.+.+++.+ .+++.++++|+|+++  ++||+.+.+++..||+|+++++
T Consensus       323 ~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          323 ANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             HHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             HHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            34556777777777 588999899999999  9999999999999999999863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=1e-38  Score=266.10  Aligned_cols=239  Identities=15%  Similarity=0.107  Sum_probs=205.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-----------------------------------cccceeEeecCCcceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-----------------------------------TGWEEYSLITAPHLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-----------------------------------g~~~~~~~v~~~~~~~~~p   48 (268)
                      -|++| |+++|++ ++|++||||++.                                   |+|+||++++++.++++ |
T Consensus        63 ~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~i-P  139 (357)
T 2b5w_A           63 HEAVG-VVVDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRI-P  139 (357)
T ss_dssp             SEEEE-EEEECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEEC-C
T ss_pred             ceeEE-EEEECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEEC-C
Confidence            47799 9999999 999999999852                                   78999999999999999 9


Q ss_pred             CCCCchhhhhhccchHHHHHHHhhhhcCCCCC------cEEEEecCcchHHHHH-HHHH-HHcCCE-EEEEeCCHH---H
Q 024411           49 TDVPLSYYTGILGMPGMTAYVGFYEVCSPKHG------ECVFISAASGAVGQLV-GQFA-KLLGCY-VVGSAGSKD---K  116 (268)
Q Consensus        49 ~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~------~~vlI~ga~g~~G~~~-i~l~-~~~g~~-V~~~~~~~~---~  116 (268)
                      ++++   ++|+++.++.|||+++ +.++++++      ++|||+|+ |++|+++ +|+| +.+|++ |++++++++   +
T Consensus       140 ~~~~---~~aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~  214 (357)
T 2b5w_A          140 RSQA---ELGFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPT  214 (357)
T ss_dssp             GGGS---TTGGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHH
T ss_pred             CCcc---hhhhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHH
Confidence            8854   5677889999999999 56789999      99999999 9999999 9999 999996 999999888   9


Q ss_pred             HHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccch
Q 024411          117 VDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL  195 (268)
Q Consensus       117 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  195 (268)
                      .+.++ ++|++++ ++++. ++.+ +++. ++++|++||++|+ ..+..++++++++|+++.+|...+     .....+.
T Consensus       215 ~~~~~-~lGa~~v-~~~~~-~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~~~  284 (357)
T 2b5w_A          215 IDIIE-ELDATYV-DSRQT-PVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSD-----WAFEVDA  284 (357)
T ss_dssp             HHHHH-HTTCEEE-ETTTS-CGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCC-----CCCCCCH
T ss_pred             HHHHH-HcCCccc-CCCcc-CHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCC-----CCceecH
Confidence            99998 9999988 88875 6766 7777 4589999999998 588999999999999999987542     1122344


Q ss_pred             HHH----HhcceeeeeEEecccccchHHHHHHHHHHHHcC--C-ceeeeehhcccccHHHHHHHHHcCCccceEEEEecC
Q 024411          196 MYL----VSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEG--K-LVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVAP  268 (268)
Q Consensus       196 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~~  268 (268)
                      ..+    +.+++++.++....     .+.++++++++.+|  + +++.++++|+|+++++||+.+   +..||+|+++++
T Consensus       285 ~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~  356 (357)
T 2b5w_A          285 GAFHREMVLHNKALVGSVNSH-----VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHHHHHTTCEEEECCCCC-----HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred             HHHhHHHHhCCeEEEEeccCC-----HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence            555    78999998876544     67899999999999  8 688888999999999999988   457899999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.9e-38  Score=258.03  Aligned_cols=250  Identities=22%  Similarity=0.319  Sum_probs=198.0

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhh-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYE-   73 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~-   73 (268)
                      -|++|+|+++  ++++|++||||++.         |+|+||++++++.++++ |++++.. ++|++++++.|||.+++. 
T Consensus        66 ~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~-P~~l~~~-~aa~~~~~~~ta~~~l~~~  141 (328)
T 1xa0_A           66 IDLAGVVVSS--QHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPL-PKGLTLK-EAMAIGTAGFTAALSIHRL  141 (328)
T ss_dssp             SEEEEEEEEC--CSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEEC-CTTCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEec--CCCCCCCCCEEEEccccCCCCCCccceeEEEechHHeEEC-CCCCCHH-HhhhhhhhHHHHHHHHHHH
Confidence            3567777774  57889999999853         89999999999999999 9985554 377888889999988753 


Q ss_pred             -hcCCCCCc-EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           74 -VCSPKHGE-CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        74 -~~~~~~~~-~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                       ..++++++ +|||+|++|++|++++|+|+.+|++|+++++++++.+.++ ++|+++++|+++. + .+.+++.+++++|
T Consensus       142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i~~~~~-~-~~~~~~~~~~~~d  218 (328)
T 1xa0_A          142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVLAREDV-M-AERIRPLDKQRWA  218 (328)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEEECC-----------CCSCCEE
T ss_pred             hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCcEEEecCCc-H-HHHHHHhcCCccc
Confidence             35788887 9999999999999999999999999999999999999998 8999999988754 3 3344554444899


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  230 (268)
                      ++|||+|++.+..++++++++|+++.+|...+.     ....+...++.+++++.|+..... .....+.++.+.+++.+
T Consensus       219 ~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  293 (328)
T 1xa0_A          219 AAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKP  293 (328)
T ss_dssp             EEEECSTTTTHHHHHHTEEEEEEEEECSCCSSS-----CCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCC
T ss_pred             EEEECCcHHHHHHHHHhhccCCEEEEEeecCCC-----CCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHc
Confidence            999999998899999999999999999875421     122334566789999988753222 12234567777788888


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEec
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~~  267 (268)
                      + +++. .++|+|+++++||+.+.+++..||+|++++
T Consensus       294 g-l~~~-~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          294 D-LERI-AQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             C-HHHH-EEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             C-Ccee-eeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            8 7764 578999999999999999888899999864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.1e-38  Score=263.47  Aligned_cols=251  Identities=22%  Similarity=0.350  Sum_probs=202.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhh-
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYE-   73 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~-   73 (268)
                      .|++|+|+++  ++++|++||||++.         |+|+||++++++.++++ |++++.. ++|++++.+.|||.+++. 
T Consensus        67 ~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~l~~~-~aa~l~~~~~ta~~~l~~~  142 (330)
T 1tt7_A           67 IDAAGTVVSS--NDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPL-PQNLSLK-EAMVYGTAGFTAALSVHRL  142 (330)
T ss_dssp             SEEEEEEEEC--SSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEEC-CTTCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEc--CCCCCCCCCEEEEcccccCCCCCccceeEEEecHHHeEEC-CCCCCHH-HHhhccchHHHHHHHHHHH
Confidence            3667888885  56889999999853         89999999999999999 9985554 377888889999988753 


Q ss_pred             -hcCCCCCc-EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           74 -VCSPKHGE-CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        74 -~~~~~~~~-~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                       ..++++++ +|||+|++|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+++. + .+.+++.+++++|
T Consensus       143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~v~~~~~~-~-~~~~~~~~~~~~d  219 (330)
T 1tt7_A          143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISREDV-Y-DGTLKALSKQQWQ  219 (330)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHHHH-C-SSCCCSSCCCCEE
T ss_pred             HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEEECCCc-h-HHHHHHhhcCCcc
Confidence             35788887 9999999999999999999999999999999999999998 8999999876532 1 1122333334899


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-ccchHHHHHHHHHHHHc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-YHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  230 (268)
                      ++|||+|++.+..++++++++|+++.+|...+     .....+...++.+++++.|+..... .....+.++++.+++.+
T Consensus       220 ~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  294 (330)
T 1tt7_A          220 GAVDPVGGKQLASLLSKIQYGGSVAVSGLTGG-----GEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKP  294 (330)
T ss_dssp             EEEESCCTHHHHHHHTTEEEEEEEEECCCSSC-----SCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCC
T ss_pred             EEEECCcHHHHHHHHHhhcCCCEEEEEecCCC-----CccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhc
Confidence            99999999889999999999999999987432     1122344567789999988753222 12234567777888888


Q ss_pred             CCceeeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          231 GKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       231 g~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      |++++.++++|+|+++++||+.+.+++..||+|+++
T Consensus       295 g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          295 DQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             SCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             CCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            999998889999999999999999988889999863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=9.1e-37  Score=248.83  Aligned_cols=240  Identities=24%  Similarity=0.284  Sum_probs=198.5

Q ss_pred             CCCccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            2 QPISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         2 ~~~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      |.+.|...+.+|-        ||||+++   |+|+||++++++.++++ |++++.. ++|+++++++|||+++...+ ++
T Consensus        56 p~i~G~e~~G~V~--------GdrV~~~~~~G~~aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~~~ta~~~l~~~~-~~  124 (302)
T 1iz0_A           56 PFIPGMEVVGVVE--------GRRYAALVPQGGLAERVAVPKGALLPL-PEGLSPE-EAAAFPVSFLTAYLALKRAQ-AR  124 (302)
T ss_dssp             SBCCCCEEEEEET--------TEEEEEECSSCCSBSEEEEEGGGCEEC-CTTCCHH-HHHTSHHHHHHHHHHHHHTT-CC
T ss_pred             CCcccceEEEEEE--------CcEEEEecCCcceeeEEEEcHHHcEeC-CCCCCHH-HHHHhhhHHHHHHHHHHHhc-CC
Confidence            3456666555553        9999987   99999999999999999 9985443 37899999999999998777 99


Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-hhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE-EADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      ++++|||+|++|++|++++|+++..|++|+++++++++.+.++ ++|+++++++++ . ++.+.+     +++|+++| +
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~~~-~~~~~~-----~~~d~vid-~  196 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAEVP-ERAKAW-----GGLDLVLE-V  196 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGGHH-HHHHHT-----TSEEEEEE-C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEECCcch-hHHHHh-----cCceEEEE-C
Confidence            9999999999999999999999999999999999999999998 899999998875 4 555444     46999999 9


Q ss_pred             ChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchHHHHHHHHH---HHHcCCce
Q 024411          158 GGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP---HIKEGKLV  234 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~l~  234 (268)
                      |+..+..++++++++|+++.+|...+.     ....+...++.+++++.++....+ ....+.++++++   ++.+|+++
T Consensus       197 g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~g~l~  270 (302)
T 1iz0_A          197 RGKEVEESLGLLAHGGRLVYIGAAEGE-----VAPIPPLRLMRRNLAVLGFWLTPL-LREGALVEEALGFLLPRLGRELR  270 (302)
T ss_dssp             SCTTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHH-TTCHHHHHHHHHHHGGGBTTTBC
T ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCCC-----CCCcCHHHHHhCCCeEEEEeccch-hhhHHHHHHHHhhhHHHHcCCcc
Confidence            998899999999999999999875431     112344567789999988765432 223677889999   99999999


Q ss_pred             eeeehhcccccHHHHHHHHHcCCccceEEEEe
Q 024411          235 YVEDMAEGLESAPAALIGLFSGQNVGKQVVAV  266 (268)
Q Consensus       235 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  266 (268)
                      +.++++|+++++++|++.+.+++..||+++++
T Consensus       271 ~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          271 PVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             CCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             cccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            99999999999999999999888889999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2e-35  Score=247.06  Aligned_cols=239  Identities=16%  Similarity=0.125  Sum_probs=197.3

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEe---------------------------------ccccceeEeecCCcceeecCCCC
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWG---------------------------------MTGWEEYSLITAPHLFKIQHTDV   51 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------~g~~~~~~~v~~~~~~~~~p~~~   51 (268)
                      |++|+|++  ++ ++|++||||++                                 .|+|+||++++++.++++ |+++
T Consensus        67 E~~G~V~~--~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~i-P~~l  142 (366)
T 2cdc_A           67 EAIGVVEE--SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKI-PKSI  142 (366)
T ss_dssp             EEEEEECS--CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEE-CGGG
T ss_pred             ceEEEEEe--CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEEC-cCCc
Confidence            55677766  66 88999999984                                 278999999999999999 9985


Q ss_pred             CchhhhhhccchHHHHHHHhh--h--hcCCC--C-------CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH---H
Q 024411           52 PLSYYTGILGMPGMTAYVGFY--E--VCSPK--H-------GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK---D  115 (268)
Q Consensus        52 ~~~~~~a~l~~~~~~a~~~l~--~--~~~~~--~-------~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~---~  115 (268)
                      +   +.|+++.++.|||+++.  .  .++++  +       +++|||+|+ |++|++++|+++.+|++|+++++++   +
T Consensus       143 ~---~~Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~  218 (366)
T 2cdc_A          143 E---DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEV  218 (366)
T ss_dssp             T---TTGGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHH
T ss_pred             c---hhhhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchH
Confidence            4   45568889999999997  4  67888  8       999999999 9999999999999999999999988   8


Q ss_pred             HHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhH-HhHHHhhhcCCEEEEEcccccccCCCCcccc
Q 024411          116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLL-DAVLPNMKIRGRIAACGMISQYNLDKPEGVH  193 (268)
Q Consensus       116 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  193 (268)
                      +.+.++ ++|++.+ | .+  ++.+.+++ +++++|++||++|. ..+ ..++++++++|+++.+|...+     .....
T Consensus       219 ~~~~~~-~~ga~~v-~-~~--~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~  287 (366)
T 2cdc_A          219 EQTVIE-ETKTNYY-N-SS--NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTS-----GSVPL  287 (366)
T ss_dssp             HHHHHH-HHTCEEE-E-CT--TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCS-----CEEEE
T ss_pred             HHHHHH-HhCCcee-c-hH--HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCC-----Ccccc
Confidence            888888 8999877 7 43  44455555 33579999999998 577 899999999999999987432     11234


Q ss_pred             chHH---HHhcceeeeeEEecccccchHHHHHHHHHHHHcCC------ceeeeehhcccccHHHHHHHH-HcCCccceEE
Q 024411          194 NLMY---LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK------LVYVEDMAEGLESAPAALIGL-FSGQNVGKQV  263 (268)
Q Consensus       194 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------l~~~~~~~~~~~~~~~a~~~~-~~~~~~gkvv  263 (268)
                      +...   ++.+++++.|+....     .+.++++++++.+|+      +++.++++|+|+++++||+.+ .+++..||+|
T Consensus       288 ~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvv  362 (366)
T 2cdc_A          288 DYKTLQEIVHTNKTIIGLVNGQ-----KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIR  362 (366)
T ss_dssp             EHHHHHHHHHTTCEEEECCCCC-----HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEE
T ss_pred             ChhhhHHHHhcCcEEEEecCCC-----HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEE
Confidence            4555   788999998875543     678899999999999      667888899999999999994 3356789999


Q ss_pred             EEec
Q 024411          264 VAVA  267 (268)
Q Consensus       264 i~~~  267 (268)
                      ++++
T Consensus       363 i~~~  366 (366)
T 2cdc_A          363 ILWE  366 (366)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.98  E-value=2.7e-31  Score=262.54  Aligned_cols=239  Identities=21%  Similarity=0.280  Sum_probs=202.1

Q ss_pred             CCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHH
Q 024411           21 NKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVG   97 (268)
Q Consensus        21 ~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i   97 (268)
                      ++||+|+++   |+|+||++++.+.++++ |++++.. ++|+++++++|||+++...+++++|++|||+||+|++|++++
T Consensus      1608 ~vGdrV~g~~~~G~~Aeyv~vp~~~v~~i-Pd~ls~~-eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAi 1685 (2512)
T 2vz8_A         1608 ASGRRVMGMVPAEGLATSVLLLQHATWEV-PSTWTLE-EAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAI 1685 (2512)
T ss_dssp             TTSCCEEEECSSCCSBSEEECCGGGEEEC-CTTSCHH-HHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHH
T ss_pred             ccCCEEEEeecCCceeeEEEcccceEEEe-CCCCCHH-HHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHH
Confidence            489999987   89999999999999999 9985544 378889999999999988889999999999999999999999


Q ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCC
Q 024411           98 QFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRG  173 (268)
Q Consensus        98 ~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G  173 (268)
                      |+|+..|++|+++++++++.+.+++.   +|++++++++.. ++.+.+++.+++ ++|+||||++++.+..++++++++|
T Consensus      1686 qlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~-~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L~~~G 1764 (2512)
T 2vz8_A         1686 AIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDT-SFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHG 1764 (2512)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSS-HHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTEEEEE
T ss_pred             HHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCH-HHHHHHHHhcCCCCceEEEECCCchHHHHHHHhcCCCc
Confidence            99999999999999999999999842   677889999887 899999998887 9999999999999999999999999


Q ss_pred             EEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc----cchHHHHHHHHHHHHcCCceeeeehhcccccHHHH
Q 024411          174 RIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY----HLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAPAA  249 (268)
Q Consensus       174 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~a  249 (268)
                      +++.+|......     ........+.+++++.++....+.    ....+.++.+.+++.+|.+++.+.++|+++++++|
T Consensus      1765 r~V~iG~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA 1839 (2512)
T 2vz8_A         1765 RFLEIGKFDLSN-----NHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAA 1839 (2512)
T ss_dssp             EEEECCCHHHHT-----TCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHH
T ss_pred             EEEEeecccccc-----cCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHH
Confidence            999998643211     011123456788888887764431    22345556666667789999998899999999999


Q ss_pred             HHHHHcCCccceEEEEec
Q 024411          250 LIGLFSGQNVGKQVVAVA  267 (268)
Q Consensus       250 ~~~~~~~~~~gkvvi~~~  267 (268)
                      ++.+.+++..||+|++++
T Consensus      1840 ~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1840 FRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp             HHHHHTTCCSSEEEEECS
T ss_pred             HHhhhccCccceEEEECC
Confidence            999999999999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.92  E-value=1.7e-24  Score=165.68  Aligned_cols=191  Identities=21%  Similarity=0.324  Sum_probs=142.1

Q ss_pred             CcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 024411           41 PHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL  120 (268)
Q Consensus        41 ~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~  120 (268)
                      +.++++ |++++.. ++|++++++.|||+++.+.++++++++|+|+||+|++|++++|+++..|++|+++++++++.+.+
T Consensus         2 ~~~~~~-P~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~   79 (198)
T 1pqw_A            2 DLVVPI-PDTLADN-EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   79 (198)
T ss_dssp             -------------C-HHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CceeEC-CCCCCHH-HHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            457889 8885544 37788899999999998778899999999999999999999999999999999999999988888


Q ss_pred             HHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHH
Q 024411          121 KNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLV  199 (268)
Q Consensus       121 ~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  199 (268)
                      + ++|++.+++..+. ++.+.+.+.+.+ ++|+++|++|...+..++++++++|+++.+|......    ....+. ..+
T Consensus        80 ~-~~g~~~~~d~~~~-~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~-~~~  152 (198)
T 1pqw_A           80 S-RLGVEYVGDSRSV-DFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA----DASLGL-AAL  152 (198)
T ss_dssp             H-TTCCSEEEETTCS-THHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT----TCEEEG-GGG
T ss_pred             H-HcCCCEEeeCCcH-HHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcC----cCcCCh-hHh
Confidence            8 8898888888776 777788877765 8999999999888999999999999999998754211    111222 234


Q ss_pred             hcceeeeeEEecc----cccchHHHHHHHHHHHHcCCceeeeehh
Q 024411          200 SKRLRMEGFIVLD----HYHLYPKFLEMIIPHIKEGKLVYVEDMA  240 (268)
Q Consensus       200 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~~~~~~~  240 (268)
                      .+++++.++....    ......+.++++++++.+|++++.+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~  197 (198)
T 1pqw_A          153 AKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVTA  197 (198)
T ss_dssp             TTTCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCCCC-
T ss_pred             cCCcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCCCCc
Confidence            5777777653310    0112256789999999999998865443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.97  E-value=4.1e-11  Score=100.81  Aligned_cols=162  Identities=14%  Similarity=0.070  Sum_probs=114.6

Q ss_pred             cceEEEEecCCCCCCCCCCeEEe------c------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhh
Q 024411            6 GYGVAKVLDSENPEFNKGDLVWG------M------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYE   73 (268)
Q Consensus         6 ~~G~v~~vG~~v~~~~~Gd~V~~------~------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~   73 (268)
                      ..+.+.++|++++++.+|+.++.      +      |++++|+......++.+ |++  +..+.+....+..++|.++..
T Consensus        81 a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~-~k~--v~~~~~~~~~~~s~a~~av~~  157 (404)
T 1gpj_A           81 AVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINL-GKR--AREETRISEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-HHH--HHHHSSTTCSCCSHHHHHHHH
T ss_pred             HhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhh-hcc--CcchhhhcCCCccHHHHHHHH
Confidence            34556678999999999998731      1      77888888888888888 766  443334445566788887643


Q ss_pred             hcC---CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHhcCCCeeeecCChhhHHHHHHHHCCC
Q 024411           74 VCS---PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKV-DLLKNKFGFDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        74 ~~~---~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...   -.++++|+|+|+ |++|.++++.++..|+ +|+++.+++++. +.+. ++|+. ++++.   ++.+.+.     
T Consensus       158 a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-~~g~~-~~~~~---~l~~~l~-----  226 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-DLGGE-AVRFD---ELVDHLA-----  226 (404)
T ss_dssp             HHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-HHTCE-ECCGG---GHHHHHH-----
T ss_pred             HHHHhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcCCc-eecHH---hHHHHhc-----
Confidence            221   257899999998 9999999999999999 999999999886 5555 78875 44332   4433332     


Q ss_pred             CccEEEeCCCh-hhHH--hHHHh--h--hcCCEEEEEccc
Q 024411          149 GIDIYFENVGG-KLLD--AVLPN--M--KIRGRIAACGMI  181 (268)
Q Consensus       149 ~~d~v~d~~g~-~~~~--~~~~~--l--~~~G~~v~~g~~  181 (268)
                      ++|+|++|++. ..+.  ..+..  +  ++++..+.++..
T Consensus       227 ~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          227 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            49999999986 3322  44554  4  446777776653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.97  E-value=3.4e-09  Score=87.88  Aligned_cols=145  Identities=14%  Similarity=0.067  Sum_probs=95.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +++|+|+|+ |++|+++++.++.+|++|+++++++++.+.+. +++...  +++.+.. ++.+.+.     ++|++++|+
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-----~~DvVI~~~  238 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYSNSA-EIETAVA-----EADLLIGAV  238 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEECCHH-HHHHHHH-----TCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeCCHH-HHHHHHc-----CCCEEEECC
Confidence            489999998 99999999999999999999999999998887 555433  3443333 4444443     499999999


Q ss_pred             Chhh-------HHhHHHhhhcCCEEEEEcccccccCCCC-ccccchHHHHhcceeeeeEEeccc-------ccchHHHHH
Q 024411          158 GGKL-------LDAVLPNMKIRGRIAACGMISQYNLDKP-EGVHNLMYLVSKRLRMEGFIVLDH-------YHLYPKFLE  222 (268)
Q Consensus       158 g~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  222 (268)
                      +...       ....++.++++|+++.++...+...... ....+...+..+++++.+......       .......++
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~  318 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLP  318 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHH
Confidence            8632       5677889999999999987443211100 011112223346666665432111       111234567


Q ss_pred             HHHHHHHcCC
Q 024411          223 MIIPHIKEGK  232 (268)
Q Consensus       223 ~~~~~~~~g~  232 (268)
                      .+++++.+|.
T Consensus       319 ~l~~l~~~G~  328 (361)
T 1pjc_A          319 YVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHhCCc
Confidence            7788887773

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.87  E-value=4.1e-08  Score=81.63  Aligned_cols=148  Identities=17%  Similarity=0.115  Sum_probs=91.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++++|+|+|+ |++|+.+++.++.+|++|+++++++++.+.+.+.++.....+....+++.+.+.     ++|++++|++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~-----~~DvVi~~~g  238 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ-----HADLLIGAVL  238 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH-----HCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh-----CCCEEEECCC
Confidence            3589999998 999999999999999999999999998888773477653333333214444443     4899999998


Q ss_pred             hhh-------HHhHHHhhhcCCEEEEEcccccccCCCC-ccccchHHHHhcceeeeeEEeccc--c-----cchHHHHHH
Q 024411          159 GKL-------LDAVLPNMKIRGRIAACGMISQYNLDKP-EGVHNLMYLVSKRLRMEGFIVLDH--Y-----HLYPKFLEM  223 (268)
Q Consensus       159 ~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~  223 (268)
                      ...       ....++.++++|+++.++...+...... ....+...+..+++++.+......  +     ......++.
T Consensus       239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~  318 (369)
T 2eez_A          239 VPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPY  318 (369)
T ss_dssp             -------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHH
T ss_pred             CCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHH
Confidence            632       5678889999999999987543111000 001112223345666655442111  1     112345677


Q ss_pred             HHHHHHcCC
Q 024411          224 IIPHIKEGK  232 (268)
Q Consensus       224 ~~~~~~~g~  232 (268)
                      +.+++.+|.
T Consensus       319 l~~l~~~g~  327 (369)
T 2eez_A          319 VLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHhcCh
Confidence            777777764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.87  E-value=2.5e-08  Score=83.02  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++++|+|+|+ |++|+.+++.++.+|++|++.++++++.+.+.+.+|.....+.....++.+.+.     ++|++++|++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~-----~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK-----RADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH-----HCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc-----CCCEEEECCC
Confidence            5789999998 999999999999999999999999999888873477753333322214444443     4899999987


Q ss_pred             hhh-------HHhHHHhhhcCCEEEEEcccc
Q 024411          159 GKL-------LDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       159 ~~~-------~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      .+.       ....++.++++|.++.++...
T Consensus       241 ~p~~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          241 VPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             CTTSCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             cCCCCCcceecHHHHhcCCCCcEEEEEecCC
Confidence            532       567888999999999998543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.67  E-value=3.2e-08  Score=82.72  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCh--------------hh----HH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-FNYKEE--------------AD----LN  139 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~~~--------------~~----~~  139 (268)
                      ++++|+|+|+ |.+|+.++++++.+|++|++.++++++.+.++ ++|+..+ ++..+.              ++    ..
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            6889999997 99999999999999999999999988888888 7887644 232110              00    11


Q ss_pred             HHHHHHCCCCccEEEeCC---Chh---h-HHhHHHhhhcCCEEEEEcccc
Q 024411          140 AALKRYFPEGIDIYFENV---GGK---L-LDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~---g~~---~-~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      ..+.+... ++|++++|+   |.+   . ....++.+++++.++.++...
T Consensus       249 ~~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          249 EAVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence            22333322 599999999   532   2 267889999999999998643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.64  E-value=1.9e-07  Score=79.81  Aligned_cols=105  Identities=19%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             hHHHHHHHhhhhc-CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHH
Q 024411           63 PGMTAYVGFYEVC-SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA  141 (268)
Q Consensus        63 ~~~~a~~~l~~~~-~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  141 (268)
                      ...++|+++.+.. ...+|++|+|+|. |.+|+.+++.++.+|++|+++++++.+.+.+. ++|++ +.      ++.+.
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-~~Ga~-~~------~l~e~  326 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEIDPINALQAM-MEGFD-VV------TVEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHH
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCE-Ee------cHHHH
Confidence            4456777764432 2678999999997 99999999999999999999999999888887 88874 32      22222


Q ss_pred             HHHHCCCCccEEEeCCCh-hhHH-hHHHhhhcCCEEEEEccc
Q 024411          142 LKRYFPEGIDIYFENVGG-KLLD-AVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       142 ~~~~~~~~~d~v~d~~g~-~~~~-~~~~~l~~~G~~v~~g~~  181 (268)
                      +     .++|+++++++. ..+. ..++.++++|+++.+|..
T Consensus       327 l-----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          327 I-----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             G-----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSS
T ss_pred             H-----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            2     258999999997 4455 788999999999999873

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.52  E-value=6.9e-07  Score=70.74  Aligned_cols=106  Identities=19%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +|+.+||+||++|+|.++++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+..  -|++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            68999999999999999999999999999999999998887766777642   234444323333333222  1479999


Q ss_pred             EeCCCh-h-------------------------hHHhHHHhhhcCCEEEEEcccccc
Q 024411          154 FENVGG-K-------------------------LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~-~-------------------------~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      ++++|. .                         ..+.+++.++.+|++|.+++..+.
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~  164 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS  164 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc
Confidence            999874 1                         034456677788999999876654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.48  E-value=7.4e-07  Score=74.68  Aligned_cols=124  Identities=16%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecC-------------ChhhH----HH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-FNYK-------------EEADL----NA  140 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~-------------~~~~~----~~  140 (268)
                      ++.+|+|+|+ |.+|+.++++++.+|++|++.++++++.+.++ ++|+..+ ++..             .. ++    ..
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~  247 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEAGSGDGYAKVMSD-AFIKAEME  247 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH-HTTCEECCC--------CCHHHHHHSH-HHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCEEEEecccccccccccchhhccH-HHHHHHHH
Confidence            5789999997 99999999999999999999999999888887 8887643 1211             01 11    11


Q ss_pred             HHHHHCCCCccEEEeCC---Ch---hhH-HhHHHhhhcCCEEEEEcccccccCCCCccccchH-HHHhcceeeeeEE
Q 024411          141 ALKRYFPEGIDIYFENV---GG---KLL-DAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLM-YLVSKRLRMEGFI  209 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~---g~---~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  209 (268)
                      .+.+... ++|++++++   |.   ..+ ...++.+++++.++.++...+.......   ... .+..+++++.+..
T Consensus       248 ~l~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~---~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          248 LFAAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTV---PGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCC---TTSEEECTTSCEEECCS
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCccc---CCCceEEECCEEEEeeC
Confidence            2333222 489999995   31   123 5788999999999999864322111110   000 1245777777654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.37  E-value=5.5e-07  Score=64.42  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHH
Q 024411           64 GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALK  143 (268)
Q Consensus        64 ~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  143 (268)
                      .+++++++... ....+++|+|+|+ |.+|...++.++..|++|++..+++++.+.+.++++.. +....   ++.+.+.
T Consensus         6 ~sv~~~a~~~~-~~~~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~-~~~~~---~~~~~~~   79 (144)
T 3oj0_A            6 VSIPSIVYDIV-RKNGGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYE-YVLIN---DIDSLIK   79 (144)
T ss_dssp             CSHHHHHHHHH-HHHCCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCE-EEECS---CHHHHHH
T ss_pred             ccHHHHHHHHH-HhccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCc-eEeec---CHHHHhc
Confidence            34556666433 3344899999997 99999999999889999999999998877655477743 22232   3333343


Q ss_pred             HHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          144 RYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                           ++|+++.|++..........+++++.++.++.
T Consensus        80 -----~~Divi~at~~~~~~~~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           80 -----NNDVIITATSSKTPIVEERSLMPGKLFIDLGN  111 (144)
T ss_dssp             -----TCSEEEECSCCSSCSBCGGGCCTTCEEEECCS
T ss_pred             -----CCCEEEEeCCCCCcEeeHHHcCCCCEEEEccC
Confidence                 48999999997422222367788888888766

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.36  E-value=3.1e-07  Score=71.86  Aligned_cols=103  Identities=13%  Similarity=0.090  Sum_probs=72.5

Q ss_pred             HHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHH
Q 024411           69 VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        69 ~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      +++ ....+.++++||..|+ | .|..+..+++. +.+|++++.+++..+.+++.   .+...-+..... ++.    +.
T Consensus        82 ~~~-~~~~~~~~~~vldiG~-G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~----~~  152 (248)
T 2yvl_A           82 YIA-LKLNLNKEKRVLEFGT-G-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV-DFK----DA  152 (248)
T ss_dssp             HHH-HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS-CTT----TS
T ss_pred             HHH-HhcCCCCCCEEEEeCC-C-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc-Chh----hc
Confidence            344 4557889999999997 5 69999999988 88999999999988887732   243111111111 111    11


Q ss_pred             C-CC-CccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          146 F-PE-GIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 ~-~~-~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . .+ .+|+|+...+.  ..+..+.+.|+++|+++....
T Consensus       153 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          153 EVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             ccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            2 23 79999987764  678899999999999988754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.29  E-value=5e-06  Score=65.41  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.++++...   ..|..+.++....+.+..  .+.+|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999999999999999988877765555431   224444323332222211  1369999


Q ss_pred             EeCCChh-----------h---------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          154 FENVGGK-----------L---------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      ++++|..           .               .+.+++.++.+|++|.+++....
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~  143 (255)
T 4eso_A           87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE  143 (255)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc
Confidence            9998731           0               22334445567899999876543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.24  E-value=1.8e-05  Score=61.62  Aligned_cols=105  Identities=10%  Similarity=0.021  Sum_probs=71.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCC--CCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFP--EGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~--~~~d~v~d  155 (268)
                      ++++||+||++++|.++++.+...|++|+++++++++.+.+.++.+...  ..|..+.++....+.+...  |++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3789999999999999999999999999999999988877763332222  2344443233333332221  47999999


Q ss_pred             CCCh-h----------h---------------HHhHHHhhh-cCCEEEEEcccccc
Q 024411          156 NVGG-K----------L---------------LDAVLPNMK-IRGRIAACGMISQY  184 (268)
Q Consensus       156 ~~g~-~----------~---------------~~~~~~~l~-~~G~~v~~g~~~~~  184 (268)
                      ++|. .          .               .+.+.+.+. .+|++|.+++..+.
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~  137 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAF  137 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            9873 1          0               223444443 47999999876653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.23  E-value=8.3e-06  Score=63.90  Aligned_cols=106  Identities=18%  Similarity=0.250  Sum_probs=72.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +|+.+||+||++++|.++++.+...|++|+++++++++.+...++   .|...   ..|..++++..+.+.+..  .|++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            578999999999999999999999999999999998876554323   34332   234444323333333322  2479


Q ss_pred             cEEEeCCChhh--------------------------HHhHHHhhh---cCCEEEEEcccccc
Q 024411          151 DIYFENVGGKL--------------------------LDAVLPNMK---IRGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~~~--------------------------~~~~~~~l~---~~G~~v~~g~~~~~  184 (268)
                      |++++++|...                          .+.+++.+.   .+|++|.+++..+.
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~  150 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ  150 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence            99999987310                          234555552   36899999876654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.21  E-value=2e-05  Score=53.75  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .+.+|+|+|+ |.+|..+++.+...| .+|+++++++++.+.+. ..+... ..+..+.    ..+.+... ++|+++++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~----~~~~~~~~-~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDE----AGLAKALG-GFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCH----HHHHHHTT-TCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCH----HHHHHHHc-CCCEEEEC
Confidence            3568999999 999999999999999 79999999999888876 555542 2333332    23333322 59999999


Q ss_pred             CChhhHHhHHHhh-hcCCEEEEE
Q 024411          157 VGGKLLDAVLPNM-KIRGRIAAC  178 (268)
Q Consensus       157 ~g~~~~~~~~~~l-~~~G~~v~~  178 (268)
                      ++..........+ ..+.+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEECC
T ss_pred             CCchhhHHHHHHHHHhCCCEEEe
Confidence            9874444444444 444455443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.19  E-value=1.5e-05  Score=62.34  Aligned_cols=106  Identities=21%  Similarity=0.313  Sum_probs=72.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +|+.+||+||++|+|.++++.+...|++|+++++++++.+.+.++   .|...   ..|..+.++....+.+..  -|++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999999999877665433   34432   234444323333333222  1479


Q ss_pred             cEEEeCCCh--h--h-----------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          151 DIYFENVGG--K--L-----------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~--~--~-----------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      |++++++|.  .  .                       .+.+++.|.+  +|++|.+++..+.
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~  148 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGI  148 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc
Confidence            999999872  1  0                       2345555543  6899999876654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.18  E-value=2.8e-05  Score=61.21  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++...   ..|..+.++..+.+.+..  .+++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46899999999999999999999999999999999888777664665432   234444323333333221  2369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        87 v~~Ag~   92 (259)
T 4e6p_A           87 VNNAAL   92 (259)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.16  E-value=2.4e-05  Score=61.85  Aligned_cols=81  Identities=22%  Similarity=0.327  Sum_probs=58.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-e--eecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-A--FNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++... .  .|..+.++....+.+..  .+++|++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL  105 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999999888777654666532 2  24444323333333221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus       106 vnnAg~  111 (266)
T 3grp_A          106 VNNAGI  111 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999883

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.16  E-value=4.8e-06  Score=64.61  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-CeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .|+++||+||++++|.++++.+...|++|++++++.++.+... .-.. ....|..+++...+.+ +.. |++|++++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~-~~~-g~iDiLVNNA   86 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDSQRLQRLF-EAL-PRLDVLVNNA   86 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCHHHHHHHH-HHC-SCCSEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCHHHHHHHH-Hhc-CCCCEEEECC
Confidence            6899999999999999999999999999999998876554322 1111 1133555542333333 332 4799999998


Q ss_pred             Ch-hh-----------------------HHhHHHhhh-cCCEEEEEcccccc
Q 024411          158 GG-KL-----------------------LDAVLPNMK-IRGRIAACGMISQY  184 (268)
Q Consensus       158 g~-~~-----------------------~~~~~~~l~-~~G~~v~~g~~~~~  184 (268)
                      |- ..                       .+.+++.++ .+|++|.+++..+.
T Consensus        87 Gi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  138 (242)
T 4b79_A           87 GISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST  138 (242)
T ss_dssp             CCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            83 11                       233455554 47999999876654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.16  E-value=2.5e-05  Score=62.16  Aligned_cols=81  Identities=21%  Similarity=0.311  Sum_probs=58.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++++.. .  ..|..+.++....+.+..  .+++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5689999999999999999999999999999999988877766466543 2  234444323333333221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus       108 vnnAg~  113 (277)
T 3gvc_A          108 VANAGV  113 (277)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.12  E-value=1.5e-05  Score=63.57  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++    +.. .  ..|..+.++..+.+.+..  .+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999988766554333    211 1  234444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       112 iD~lvnnAG~  121 (281)
T 4dry_A          112 LDLLVNNAGS  121 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.12  E-value=2.6e-05  Score=61.86  Aligned_cols=82  Identities=17%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      ..++++||+||++++|.+++..+...|++|++++++.++.+.+.++++.. .  ..|..+.++..+.+.+..  .+++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999999999999999999999999999999988877766466532 2  234444323333333221  136999


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++++|.
T Consensus       106 lVnnAg~  112 (272)
T 4dyv_A          106 LFNNAGT  112 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.12  E-value=1.1e-05  Score=66.49  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-e--------cCC---h---hhHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF-N--------YKE---E---ADLNAALK  143 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~-~--------~~~---~---~~~~~~~~  143 (268)
                      ++.+|+|+|+ |.+|+.+++.++.+|++|++.++++++.+.+. ++|+..+. +        +..   .   ......+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            5789999998 99999999999999999999999999999998 78875321 1        000   0   00112222


Q ss_pred             HHCCCCccEEEeCCCh-----h--hHHhHHHhhhcCCEEEEEcccccc
Q 024411          144 RYFPEGIDIYFENVGG-----K--LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~-----~--~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +.. ..+|+++.++..     +  .....++.+++++.++.++...+-
T Consensus       261 e~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG  307 (381)
T 3p2y_A          261 DAI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG  307 (381)
T ss_dssp             HHH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred             HHH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC
Confidence            222 259999998632     1  247889999999999999765543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.11  E-value=2.3e-05  Score=65.14  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=72.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-e------------cCC--hhhH----H
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF-N------------YKE--EADL----N  139 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~-~------------~~~--~~~~----~  139 (268)
                      ++.+|+|+|+ |.+|+.++++++.+|++|++.++++++.+.+. ++|...+. +            |..  ...+    .
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            5689999998 99999999999999999999999999999988 78875321 1            110  0011    1


Q ss_pred             HHHHHHCCCCccEEEeCCCh-----h--hHHhHHHhhhcCCEEEEEccccc
Q 024411          140 AALKRYFPEGIDIYFENVGG-----K--LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~-----~--~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ..+.+.. .++|+++.|+..     +  .....++.+++++.+|.+....+
T Consensus       267 ~~l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~G  316 (405)
T 4dio_A          267 ALVAEHI-AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERG  316 (405)
T ss_dssp             HHHHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGT
T ss_pred             hHHHHHh-cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCC
Confidence            1222221 159999998631     1  34688999999999999976443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.11  E-value=3.3e-05  Score=60.94  Aligned_cols=81  Identities=9%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++.. .  ..|..+.++....+.+..  .+.+|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            4678999999999999999999999999999999988877665455422 1  234444323333333221  1368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        85 vnnAg~   90 (263)
T 2a4k_A           85 AHFAGV   90 (263)
T ss_dssp             EEGGGG
T ss_pred             EECCCC
Confidence            998873

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.10  E-value=3.7e-05  Score=60.70  Aligned_cols=80  Identities=16%  Similarity=0.306  Sum_probs=56.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|.+++..+...|++|+++++++++.+.+.+++   +...   ..|..+.++....+.+..  .+.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999999988766654333   3321   234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        83 D~lVnnAG   90 (264)
T 3tfo_A           83 DVLVNNAG   90 (264)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.08  E-value=2.8e-05  Score=61.86  Aligned_cols=102  Identities=19%  Similarity=0.303  Sum_probs=69.9

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ....+.++++||-.|+ |. |..++.+++..  +.+|++++.+++..+.+++.+   +...-+..... ++.+.   ...
T Consensus       106 ~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~---~~~  179 (277)
T 1o54_A          106 MMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DISEG---FDE  179 (277)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGGGC---CSC
T ss_pred             HHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHc---ccC
Confidence            4457889999999996 54 88888999885  469999999999888776332   43111111111 22111   112


Q ss_pred             CCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+|+|+.....  ..+..+.+.|+++|+++....
T Consensus       180 ~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          180 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            379999866553  577889999999999888744

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.07  E-value=1.4e-05  Score=63.60  Aligned_cols=98  Identities=13%  Similarity=0.102  Sum_probs=71.5

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCee--eecCChhhHHHHHHHHCCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEA--FNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v--~~~~~~~~~~~~~~~~~~~  148 (268)
                      .++++++++||.+|+ |..|..++.+++..|++|++++.+++..+.+++.   .|.+.+  +..+.. ++       ..+
T Consensus       117 la~l~~g~rVLDIGc-G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~-~l-------~d~  187 (298)
T 3fpf_A          117 LGRFRRGERAVFIGG-GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDET-VI-------DGL  187 (298)
T ss_dssp             HTTCCTTCEEEEECC-CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGG-GG-------GGC
T ss_pred             HcCCCCcCEEEEECC-CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchh-hC-------CCC
Confidence            467899999999997 7667777778888899999999999988888732   254322  222211 21       124


Q ss_pred             CccEEEeCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .||+|+-....    ..+..+.+.|+|+|+++....
T Consensus       188 ~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          188 EFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            79999865442    468899999999999987754

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.05  E-value=6.2e-05  Score=59.23  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHCCC-C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYFPE-G  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~~~-~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++     +.. .  ..|..+.+.+...+.+.... +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999999999999987765544233     212 2  23444432333333332222 3


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        86 id~lv~~Ag   94 (260)
T 2z1n_A           86 ADILVYSTG   94 (260)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.04  E-value=6.6e-05  Score=60.45  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      -.++++||+||+|++|..++..+...|++|++++++.++.+.+.+++   +.. .  ..|..+.++..+.+.+..  .++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999999999988776654333   332 1  234444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       109 id~lvnnAg  117 (301)
T 3tjr_A          109 VDVVFSNAG  117 (301)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.03  E-value=3.2e-05  Score=61.95  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++.. .  ..|..+.++..+.+.+.  +.+|++++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv~   92 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV--SGADVLIN   92 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC--CCEEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc--CCCCEEEE
Confidence            5789999999999999999999999999999999998888776455432 1  23444442333333333  47999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        93 nAg~   96 (291)
T 3rd5_A           93 NAGI   96 (291)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            9883

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.03  E-value=5.4e-05  Score=59.61  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++... .  ..|..+.+++.+.+.+..  .+++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999999999999999999999999999999988776654344321 1  234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        86 v~~Ag   90 (260)
T 1nff_A           86 VNNAG   90 (260)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.02  E-value=3.2e-05  Score=60.76  Aligned_cols=80  Identities=10%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC--e--eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD--E--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~--~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .|+++||+||+|  |+|.++++.+...|++|+++.++++..+.+.+   +.+..  .  ..|..++++....+.+..  -
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            578999999876  89999999999999999999998876555442   33332  2  234444323333333221  1


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      |.+|++++++|
T Consensus        85 G~iD~lvnnAg   95 (256)
T 4fs3_A           85 GNIDGVYHSIA   95 (256)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEeccc
Confidence            47999999887

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.02  E-value=5.6e-05  Score=61.40  Aligned_cols=80  Identities=18%  Similarity=0.227  Sum_probs=56.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC--C-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF--D-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~--~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..++..+...|++|++++++.++.+.+.+++   +.  . .  ..|..+.+++...+.+..  .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999999999999999988766554232   32  1 1  234444323333333221  23


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++++|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999988

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.02  E-value=2.8e-05  Score=60.76  Aligned_cols=80  Identities=18%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+..  .+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            46899999999999999999999999999999999988777664665432   234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        85 v~nAg   89 (247)
T 3rwb_A           85 VNNAS   89 (247)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.02  E-value=2.9e-05  Score=60.62  Aligned_cols=81  Identities=21%  Similarity=0.323  Sum_probs=58.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCCCCccEE
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      ..+++++||+||+|++|..++..+...|++|++++++.++.+.+.+++....   ..|..+.+.+.+.+.+.  +++|++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~l   88 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT--SNLDIL   88 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC--SCCSEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc--CCCCEE
Confidence            4578899999999999999999999999999999999988777764554432   22333331333333322  369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        89 i~~Ag~   94 (249)
T 3f9i_A           89 VCNAGI   94 (249)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            999883

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.01  E-value=3.8e-05  Score=64.01  Aligned_cols=102  Identities=20%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             HHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHH
Q 024411           66 TAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        66 ~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      ..+.++.+... .-.|++++|.|. |.+|..+++.++.+|++|+++++++.+...+. ..|.. +.      ++.+.+. 
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-~~G~~-v~------~Leeal~-  274 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEIDPICALQAC-MDGFR-LV------KLNEVIR-  274 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHTT-
T ss_pred             HHHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-HcCCE-ec------cHHHHHh-
Confidence            44555544433 458999999997 99999999999999999999998887666665 55642 21      2322222 


Q ss_pred             HCCCCccEEEeCCCh-hhHH-hHHHhhhcCCEEEEEccc
Q 024411          145 YFPEGIDIYFENVGG-KLLD-AVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~-~~~~-~~~~~l~~~G~~v~~g~~  181 (268)
                          ..|+++.|.|. ..+. ..++.+++++.++.+|..
T Consensus       275 ----~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          275 ----QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             ----TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred             ----cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCC
Confidence                48999999886 4444 789999999999998763

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.01  E-value=9.4e-05  Score=58.39  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-----C-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-----D-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-----~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++..     . .  ..|..+.+++...+.+..  .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            567899999999999999999999999999999998766544323321     1 1  124444323333333221  13


Q ss_pred             CccEEEeCCCh---hh---------------HHhHHHhhhc-----CCEEEEEccccc
Q 024411          149 GIDIYFENVGG---KL---------------LDAVLPNMKI-----RGRIAACGMISQ  183 (268)
Q Consensus       149 ~~d~v~d~~g~---~~---------------~~~~~~~l~~-----~G~~v~~g~~~~  183 (268)
                      .+|++++++|.   +.               ....++.+..     .|++|.+++..+
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  143 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  143 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccc
Confidence            68999999983   11               1233444433     578999887654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.00  E-value=3.6e-05  Score=60.06  Aligned_cols=80  Identities=13%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++... ..|..+.++..+.+.+..  .+.+|++++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999999999999999999999999999999887776654555321 234444323333333221  136999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        84 ~Ag   86 (245)
T 1uls_A           84 YAG   86 (245)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            988

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.99  E-value=6.4e-05  Score=59.76  Aligned_cols=80  Identities=24%  Similarity=0.407  Sum_probs=54.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCC-Ce--e--eecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGF-DE--A--FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~-~~--v--~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++   .+. ..  .  .|..+.+++...+.+..  .+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999999999999998776554322   232 11  1  24444323333333221  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|++++++|
T Consensus       111 ~iD~vi~~Ag  120 (279)
T 1xg5_A          111 GVDICINNAG  120 (279)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.99  E-value=4.1e-05  Score=60.22  Aligned_cols=80  Identities=24%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+..  .+.+|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            46899999999999999999999999999999999998877765665432   234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        88 i~~Ag   92 (261)
T 3n74_A           88 VNNAG   92 (261)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99987

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.97  E-value=7.5e-05  Score=59.52  Aligned_cols=104  Identities=20%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHH----HHHhcCCCe-e--eecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDL----LKNKFGFDE-A--FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~----~~~~~g~~~-v--~~~~~~~~~~~~~~~~~--~~  148 (268)
                      +++++||+||+|++|..+++.+...|++|++++++.++ .+.    +. +.+... .  .|..+.++....+.+..  .+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999887543 222    22 334331 2  24444323333333221  13


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ++|++++++|..                          ..+.+.+.++..|++|.+++..+
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  167 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  167 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhh
Confidence            699999998731                          01233444445789999987654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.96  E-value=4.9e-05  Score=60.46  Aligned_cols=80  Identities=15%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+..  .+++|++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999999888777664555432   234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus       106 v~nAg  110 (277)
T 4dqx_A          106 VNNAG  110 (277)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.95  E-value=4.1e-05  Score=60.51  Aligned_cols=80  Identities=23%  Similarity=0.333  Sum_probs=55.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+.+.++    .+...   ..|..+.++....+.+..  .++
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   98 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG   98 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999999999999998876654323    34321   234444313333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        99 id~lv~nAg  107 (266)
T 4egf_A           99 LDVLVNNAG  107 (266)
T ss_dssp             CSEEEEECC
T ss_pred             CCEEEECCC
Confidence            999999887

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.95  E-value=3.4e-05  Score=60.30  Aligned_cols=80  Identities=25%  Similarity=0.436  Sum_probs=57.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.++++..   ...|..+.++..+.+.+..  .+++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999999999999999999999999999999988777665454432   1234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        88 v~nAg   92 (248)
T 3op4_A           88 VNNAG   92 (248)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.95  E-value=0.00013  Score=56.59  Aligned_cols=78  Identities=19%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++....+  .|..+.+.+.+.+.  ..+++|+++++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~id~vi~~   83 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALG--SVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT--TCCCCCEEEEC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHH--HcCCCCEEEEC
Confidence            468999999999999999999999999999999998877665534432223  34444312222222  12369999999


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        84 Ag   85 (244)
T 3d3w_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.94  E-value=3.3e-05  Score=59.88  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=56.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHC--CCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      ++++||+||++++|..++..+...|++|+++++++++.+.+.++++..   ...|..+.++....+.+..  .+.+|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999999999999999999999999999999998877766455332   1234444323333333221  13699999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +++|.
T Consensus        83 nnAg~   87 (235)
T 3l6e_A           83 HCAGT   87 (235)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            98873

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.94  E-value=6.6e-05  Score=59.34  Aligned_cols=80  Identities=13%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++++||+||+|++|..++..+.. .|++|++++++.++.+.+.+++   +.. .  ..|..+.+++...+.+..  .++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999988888 8999999999887655443232   322 2  234444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        83 id~li~~Ag   91 (276)
T 1wma_A           83 LDVLVNNAG   91 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.94  E-value=4.3e-05  Score=59.96  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++.. .  ..|..+.+++...+.+..  .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999999999999999999999999999999988777665355432 1  234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        84 v~nAg   88 (254)
T 1hdc_A           84 VNNAG   88 (254)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.94  E-value=5.5e-05  Score=59.59  Aligned_cols=79  Identities=16%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV-DLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~-~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++++. +.+. +.+... ..|..+.++..+.+.+..  .+.+|+++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR-QAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH-HHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-hcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            467899999999999999999999999999999887654 3333 555432 234444323333333221  23699999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus       105 ~nAg  108 (260)
T 3gem_A          105 HNAS  108 (260)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9987

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.94  E-value=0.00017  Score=56.60  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+++.+.+.+..  .+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999987665543232   332 1  234444323333333221  23699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        82 ~lv~nAg   88 (256)
T 1geg_A           82 VIVNNAG   88 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.94  E-value=5.3e-05  Score=60.40  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.+++..+...|++|++++++.++.+.+.++++...   ..|..+.++....+.+..  .+.+|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            46899999999999999999999999999999999988777764555432   224444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        84 vnnAg   88 (281)
T 3zv4_A           84 IPNAG   88 (281)
T ss_dssp             ECCCC
T ss_pred             EECCC
Confidence            99987

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.93  E-value=9.4e-05  Score=59.60  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e--eeecCCh-hhHHHHHHHHC--C
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E--AFNYKEE-ADLNAALKRYF--P  147 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~--v~~~~~~-~~~~~~~~~~~--~  147 (268)
                      ..++++||+||++++|..+++.+...|++|++++++.++.+.+.+++   +..  .  ..|..+. +.....+....  .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999988765543233   221  1  2243332 12222222221  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      +.+|++++++|.
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            369999999983

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.92  E-value=0.0001  Score=57.82  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH---HHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL---LKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~---~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +|+.+||+||++|+|.++++.+...|++|++.++++++.+.   +. +.+.. .  ..|..++++..+.+.+..  -|++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALA-QRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHH-HHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHH-hcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999987654333   33 33432 2  234444323333333222  1479


Q ss_pred             cEEEeCCCh-h---------h---------------HHhHHHhhh-cCCEEEEEcccccc
Q 024411          151 DIYFENVGG-K---------L---------------LDAVLPNMK-IRGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~-~---------~---------------~~~~~~~l~-~~G~~v~~g~~~~~  184 (268)
                      |++++++|. .         .               .+.+++.++ .+|++|.+++..+.
T Consensus        85 DiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  144 (258)
T 4gkb_A           85 DGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAV  144 (258)
T ss_dssp             CEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHH
T ss_pred             CEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhc
Confidence            999999873 1         0               234455554 37999999876543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.92  E-value=0.00012  Score=57.93  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|++++++ .++.+.+.+   +.+...   ..|..+.++..+.+.+..  .++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999998654 344433321   234332   234444323333333221  136


Q ss_pred             ccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          150 IDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       150 ~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      +|++++++|..                          ..+.+.+.++.+|++|.+++..
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~  168 (271)
T 3v2g_A          110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNL  168 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChh
Confidence            99999998731                          0233445555689999987643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.92  E-value=7.8e-05  Score=57.94  Aligned_cols=101  Identities=21%  Similarity=0.325  Sum_probs=68.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC-CCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF-PEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~-~~~~d~  152 (268)
                      .|+.+||+||++++|.++++.+...|++|++++++.  +..+.++ +.|...   ..|..++ .   .+++.. .+++|+
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~~~~~~~Dv~d~-~---~v~~~~~~g~iDi   82 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGNASALLIDFADP-L---AAKDSFTDAGFDI   82 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTST-T---TTTTSSTTTCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCcEEEEEccCCCH-H---HHHHHHHhCCCCE
Confidence            578999999999999999999999999999999864  3445555 555532   2233332 1   122222 247999


Q ss_pred             EEeCCCh-hh-------------------------HHhHHHhhh---cCCEEEEEcccccc
Q 024411          153 YFENVGG-KL-------------------------LDAVLPNMK---IRGRIAACGMISQY  184 (268)
Q Consensus       153 v~d~~g~-~~-------------------------~~~~~~~l~---~~G~~v~~g~~~~~  184 (268)
                      +++++|. ..                         .+.+++.+.   .+|++|.+++..+.
T Consensus        83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~  143 (247)
T 4hp8_A           83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSF  143 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhC
Confidence            9999873 10                         233444443   35899999876653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.90  E-value=4.2e-05  Score=60.65  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+..  .+++|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   89 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV   89 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46899999999999999999999999999999999887766654665432   234444323333333221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        90 v~nAg~   95 (271)
T 3tzq_B           90 DNNAAH   95 (271)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998873

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.90  E-value=0.00012  Score=57.61  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|.++++.+...|++|+++ .++.++.+.+.+++   +...   ..|..+.++..+.+.+..  .+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999997 77777655544232   3321   224444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        83 id~lv~nAg   91 (258)
T 3oid_A           83 LDVFVNNAA   91 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999987

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.90  E-value=0.00015  Score=58.13  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+++++|+|+ |.+|..+++.++.+|++|++.+++.++.+.+. ++|.. .++..   ++.+.+     ...|+++.++
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~-~~~~~---~l~~~l-----~~aDvVi~~~  221 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGME-PFHIS---KAAQEL-----RDVDVCINTI  221 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSE-EEEGG---GHHHHT-----TTCSEEEECC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCe-ecChh---hHHHHh-----cCCCEEEECC
Confidence            46889999997 99999999999999999999999988777666 67754 33221   333222     2489999998


Q ss_pred             Chhh-HHhHHHhhhcCCEEEEEcc
Q 024411          158 GGKL-LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~~~-~~~~~~~l~~~G~~v~~g~  180 (268)
                      .... -...+..+++++.++.++.
T Consensus       222 p~~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          222 PALVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             SSCCBCHHHHHHSCTTCEEEECSS
T ss_pred             ChHHhCHHHHHhcCCCCEEEEecC
Confidence            7532 2456778899999998875

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.90  E-value=0.00018  Score=56.11  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---Cee--eecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---DEA--FNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~~v--~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++..   ...  .|..+.+++.+.+.+..  .+.+|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            467899999999999999999999999999999998876655434431   112  24444323333333221  13699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        85 ~li~~Ag   91 (251)
T 1zk4_A           85 TLVNNAG   91 (251)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.90  E-value=6.3e-05  Score=59.10  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=56.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---C-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---D-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.+++..   . .  ..|..+.++..+.+.+..  .+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999999887766544422   1 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        85 d~lv~nAg   92 (257)
T 3imf_A           85 DILINNAA   92 (257)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999988

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.90  E-value=0.0002  Score=56.83  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChh---hHHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEA---DLNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~---~~~~~~~~~~~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++   .+...   ..|..+.+   .+.+.+.+.  +.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g~  109 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--AP  109 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--CC
Confidence            578999999999999999999999999999999887765444323   23321   12333321   233334343  57


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       110 iD~lvnnAg  118 (275)
T 4imr_A          110 VDILVINAS  118 (275)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.88  E-value=0.0001  Score=58.18  Aligned_cols=78  Identities=13%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC-Ce----eeecCChhhHHHHHHHHCCCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF-DE----AFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~-~~----v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.+++   +. ..    ..|..+. +....+.+.. +++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~-g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE-QGCQDVIEKY-PKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH-HHHHHHHHHC-CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH-HHHHHHHHhc-CCC
Confidence            4689999999999999999999999999999999987665543222   21 11    1244443 3233333322 469


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        87 d~lv~nAg   94 (267)
T 3t4x_A           87 DILINNLG   94 (267)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.88  E-value=0.00011  Score=58.18  Aligned_cols=104  Identities=15%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|++++++ .++.+.+.+   ..+...   ..|..+.++..+.+.+..  .+.
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999997654 444433321   334332   234444323333333321  136


Q ss_pred             ccEEEeCCCh-h-------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          150 IDIYFENVGG-K-------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       150 ~d~v~d~~g~-~-------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      +|++++++|. .                         ..+.+++.+.++|++|.+++..
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            9999999873 1                         0234555666789999998754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.88  E-value=0.00016  Score=57.59  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-------------CHHHHHHHHHh---cCCCe---eeecCChhhH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-------------SKDKVDLLKNK---FGFDE---AFNYKEEADL  138 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-------------~~~~~~~~~~~---~g~~~---v~~~~~~~~~  138 (268)
                      -.++++||+||++++|..+++.+...|++|+++++             ++++.+.+.+.   .+...   ..|..+.++.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            45789999999999999999999999999999987             55555544322   23321   2344443233


Q ss_pred             HHHHHHHC--CCCccEEEeCCCh
Q 024411          139 NAALKRYF--PEGIDIYFENVGG  159 (268)
Q Consensus       139 ~~~~~~~~--~~~~d~v~d~~g~  159 (268)
                      .+.+.+..  .+++|++++++|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            33333221  1369999999873

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.87  E-value=0.00012  Score=57.68  Aligned_cols=106  Identities=8%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             CCcEEEEecCcch--HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH---HhcCCC--e--eeecCChhhHHHHHHHHCC--
Q 024411           79 HGECVFISAASGA--VGQLVGQFAKLLGCYVVGSAGSKDKVDLLK---NKFGFD--E--AFNYKEEADLNAALKRYFP--  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~--~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~---~~~g~~--~--v~~~~~~~~~~~~~~~~~~--  147 (268)
                      .++++||+||+|+  +|..+++.+...|++|+++++++...+.+.   ++.+..  .  ..|..+.++..+.+.+...  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4689999999954  999999999999999999998765433332   133331  1  2344443233333333221  


Q ss_pred             CCccEEEeCCCh-h-----------------------------hHHhHHHhhhcCCEEEEEcccccc
Q 024411          148 EGIDIYFENVGG-K-----------------------------LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       148 ~~~d~v~d~~g~-~-----------------------------~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +.+|++++++|. .                             ..+.+++.++++|+++.+++....
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~  152 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE  152 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc
Confidence            369999998873 1                             012334455567899999876543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.87  E-value=0.00016  Score=55.19  Aligned_cols=96  Identities=9%  Similarity=0.081  Sum_probs=65.0

Q ss_pred             cEEEEecCcchHHHHHHHHHH-HcCCEEEEEeCCHH-HHHHHHHhcCCC-ee--eecCChhhHHHHHHHHCCCCccEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGSKD-KVDLLKNKFGFD-EA--FNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~-~~g~~V~~~~~~~~-~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      +++||+||+|++|..+++.+. ..|++|++++++++ +.+.+. ..+.. ..  .|..+.+.+.+.+     .++|++++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~-----~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-IDHERVTVIEGSFQNPGXLEQAV-----TNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-HTSTTEEEEECCTTCHHHHHHHH-----TTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-cCCCceEEEECCCCCHHHHHHHH-----cCCCEEEE
Confidence            569999999999999999888 89999999999988 665553 22322 22  2444331232222     25899999


Q ss_pred             CCChhh--HHhHHHhhhcC--CEEEEEcccc
Q 024411          156 NVGGKL--LDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       156 ~~g~~~--~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                      ++|...  ....++.++..  +++|.++...
T Consensus        80 ~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           80 GAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             cCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            998522  44555555543  5888887644

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.87  E-value=9e-05  Score=58.57  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=55.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++    +...   ..|..+.+++...+.+..  .++
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   99 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999999999999999999999999999999987765543233    4431   224444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       100 iD~lvnnAg  108 (267)
T 1vl8_A          100 LDTVVNAAG  108 (267)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=8.9e-05  Score=58.00  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----C-C-Cee--eecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----G-F-DEA--FNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g-~-~~v--~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.+++     + . ...  .|..+.++....+.+..  .
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999988766654332     2 1 112  34444323333333221  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      +.+|++++++|.
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            369999999883

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.86  E-value=0.00011  Score=58.75  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=66.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHH---hcCCCe-e--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKN---KFGFDE-A--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~---~~g~~~-v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|.++++.+...|++|++++++.++ .+.+.+   +.+... .  .|..+.++..+.+.+..  .+.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999987653 222221   334322 1  24444323333333221  136


Q ss_pred             ccEEEeCCChh---------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          150 IDIYFENVGGK---------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +|++++++|..                           ..+.+++.++.+|++|.+++...
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~  186 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA  186 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh
Confidence            99999987631                           02233445556789999876543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.86  E-value=0.0001  Score=56.80  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +++||+||+|++|..++..+...|++|+++++++++.+.+.++++..   ...|..+. +-...+.+.....+|++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASH-QEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCH-HHHHHHHHSCSSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCH-HHHHHHHHHHhhcCCEEEEeC
Confidence            36899999999999999999999999999999999888776455432   12355544 333333333333459999998


Q ss_pred             C
Q 024411          158 G  158 (268)
Q Consensus       158 g  158 (268)
                      |
T Consensus        81 g   81 (230)
T 3guy_A           81 G   81 (230)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.86  E-value=0.0001  Score=57.54  Aligned_cols=80  Identities=23%  Similarity=0.383  Sum_probs=55.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++....+.+..  .+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999999988766554333   332 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        86 d~lv~nAg   93 (247)
T 2jah_A           86 DILVNNAG   93 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.86  E-value=9.9e-05  Score=58.11  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++    +.. .  ..|..+.+++.+.+.+..  .++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999987765543232    432 1  124444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        86 id~lv~~Ag   94 (263)
T 3ai3_A           86 ADILVNNAG   94 (263)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.86  E-value=9.5e-05  Score=58.39  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++     +.. .  ..|..+.+++.+.+.+..  .+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999999999999999987765543232     332 1  234444323333333221  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|++++++|
T Consensus        92 ~id~lv~nAg  101 (267)
T 1iy8_A           92 RIDGFFNNAG  101 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.85  E-value=0.00017  Score=57.42  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------------HHHHHHHHH---hcCCCe---eeecCChhhHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------------KDKVDLLKN---KFGFDE---AFNYKEEADLNA  140 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  140 (268)
                      .++++||+||++++|..+++.+...|++|++++++            .++.+.+.+   ..+...   ..|..+.++..+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            57899999999999999999999999999999876            444443321   233321   234444323333


Q ss_pred             HHHHHCC--CCccEEEeCCChh---------h---------------HHhHHHhhhcCCEEEEEcccc
Q 024411          141 ALKRYFP--EGIDIYFENVGGK---------L---------------LDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       141 ~~~~~~~--~~~d~v~d~~g~~---------~---------------~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      .+.+...  +.+|++++++|..         .               .+.+++.+..+|+++.+++..
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  156 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVA  156 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccch
Confidence            3332211  3699999998731         0               223444455678999987654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=0.0001  Score=58.40  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++.....  .|..+.++....+.+..  .+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999999999999999999999998877766534432222  34444323333333221  13699999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus        88 ~nAg   91 (270)
T 1yde_A           88 NNAG   91 (270)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.85  E-value=7.5e-05  Score=58.51  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++...   ..|..+.++....+.+..  .+.+|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46789999999999999999999999999999999887776654554321   124444323333333221  1368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        85 v~~Ag~   90 (253)
T 1hxh_A           85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.85  E-value=0.00011  Score=57.29  Aligned_cols=78  Identities=19%  Similarity=0.332  Sum_probs=56.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHCC--CCccEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYFP--EGIDIYFE  155 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~~--~~~d~v~d  155 (268)
                      +++||+||+|++|..+++.+...|++|+++++++++.+.+.++++.. .  ..|..+.++....+.+...  +++|++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            36899999999999999999999999999999988777665455432 1  2344444244444444332  37999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        81 nAg   83 (248)
T 3asu_A           81 NAG   83 (248)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.84  E-value=9.7e-05  Score=58.62  Aligned_cols=80  Identities=10%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCe--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDE--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+  |++|..+++.+...|++|++++++++   ..+.+.++.+...  ..|..+.++....+.+..  .++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999998  99999999999999999999998764   3444432334222  234444323333333221  236


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        85 id~lv~nAg   93 (275)
T 2pd4_A           85 LDFIVHSVA   93 (275)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.84  E-value=0.00016  Score=57.51  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC-CCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP-EGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~-~~~d~v~  154 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+.+.++++...   ..|..+.++....+.+... +++|+++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv  108 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV  108 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            56899999999999999999999999999999999988877765665532   2344444244444444421 2789998


Q ss_pred             eC
Q 024411          155 EN  156 (268)
Q Consensus       155 d~  156 (268)
                      .+
T Consensus       109 ~~  110 (281)
T 3ppi_A          109 VA  110 (281)
T ss_dssp             EC
T ss_pred             Ec
Confidence            87

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.83  E-value=4e-05  Score=60.21  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.++++.. .  ..|..+.++..+.+.+..  .+++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999999999999999999999887766554355432 1  234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        86 v~nAg   90 (257)
T 3tpc_A           86 VNCAG   90 (257)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.83  E-value=7.6e-05  Score=53.82  Aligned_cols=93  Identities=17%  Similarity=0.125  Sum_probs=61.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..++.+|+|+|+ |.+|..+++.++..|.+|+++++++++.+.+++..|.. ++..+.. + ...+.+....++|+++.+
T Consensus        16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~-~~~~d~~-~-~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           16 KQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF-TVVGDAA-E-FETLKECGMEKADMVFAF   91 (155)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE-EEESCTT-S-HHHHHTTTGGGCSEEEEC
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc-EEEecCC-C-HHHHHHcCcccCCEEEEE
Confidence            456789999997 99999999999999999999999888776553123433 3333221 2 123333212279999999


Q ss_pred             CCh-hhHHhHHHhhhc-CC
Q 024411          157 VGG-KLLDAVLPNMKI-RG  173 (268)
Q Consensus       157 ~g~-~~~~~~~~~l~~-~G  173 (268)
                      ++. .....+...++. ++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~  110 (155)
T 2g1u_A           92 TNDDSTNFFISMNARYMFN  110 (155)
T ss_dssp             SSCHHHHHHHHHHHHHTSC
T ss_pred             eCCcHHHHHHHHHHHHHCC
Confidence            997 444455555554 44

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.83  E-value=6.7e-05  Score=59.69  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++...   ..|..+.+.....+.+..  .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            46789999999999999999999999999999999887776654554431   234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        84 v~~Ag   88 (281)
T 3m1a_A           84 VNNAG   88 (281)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.83  E-value=0.00012  Score=58.27  Aligned_cols=80  Identities=14%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++....+.+..  -+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999999999999987765443233   432 1  234444323333333221  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus       101 D~lv~~Ag  108 (277)
T 2rhc_B          101 DVLVNNAG  108 (277)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.83  E-value=0.00012  Score=57.74  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--eeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++... .  ..|..+.+++...+.+..  .+++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999999999999999999999999999999988776665344321 1  234444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        91 v~~Ag   95 (263)
T 3ak4_A           91 CANAG   95 (263)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.82  E-value=0.00014  Score=56.68  Aligned_cols=81  Identities=23%  Similarity=0.346  Sum_probs=56.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +...   ..|..+.++..+.+.+..  .+.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999999988766554232   3321   234444323333333321  2379


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.82  E-value=0.00016  Score=57.33  Aligned_cols=81  Identities=15%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHH---HHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLN---AALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~---~~~~~~~~~~  149 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|..+.++..   +.+.+...++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999999987765543232   3321   23444432332   3333333257


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999873

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.82  E-value=6.9e-05  Score=59.07  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.+++   +..  .  ..|..+.++....+.+..  .++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999988766544333   211  1  224444323333332221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        89 id~lvnnAg   97 (262)
T 3pk0_A           89 IDVVCANAG   97 (262)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.82  E-value=9e-05  Score=57.93  Aligned_cols=80  Identities=14%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC--e--eeecCChhhHHHHHHHHC-CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--E--AFNYKEEADLNAALKRYF-PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~--~--v~~~~~~~~~~~~~~~~~-~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++++..  .  ..|..+.+.+...+.+.. .+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            4678999999999999999999999999999999988776655354432  1  124444323333332211 2469999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        90 i~~Ag   94 (254)
T 2wsb_A           90 VNSAG   94 (254)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99987

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.82  E-value=3.5e-05  Score=60.35  Aligned_cols=100  Identities=13%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      -++++||+||+|++|..+++.+...|++|+++++++++...      ....++..+.++....+.+..  .+.+|+++++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS------EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            36789999999999999999999999999999987653221      011223333324444444432  2379999999


Q ss_pred             CCh--------h-------------------hHHhHHHhhhcCCEEEEEcccccc
Q 024411          157 VGG--------K-------------------LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       157 ~g~--------~-------------------~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +|.        .                   ..+.+.+.++++|++|.+++....
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  149 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL  149 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc
Confidence            882        0                   022334445567899999875543

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.81  E-value=5.8e-05  Score=57.93  Aligned_cols=90  Identities=9%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .++++||+||++++|..+++.+...|++|++++++.+              .|..+.+...+.+.+.  +.+|++++++|
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~--g~id~lv~nAg   68 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETI--GAFDHLIVTAG   68 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHH--CSEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            4678999999999999999999999999999987643              2333321333344433  46899998887


Q ss_pred             hh---------------------------hHHhHHHhhhcCCEEEEEcccccc
Q 024411          159 GK---------------------------LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       159 ~~---------------------------~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      ..                           ..+.+.+.++++|+++.+++....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~  121 (223)
T 3uce_A           69 SYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR  121 (223)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT
T ss_pred             CCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc
Confidence            31                           122334455567899999875543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.81  E-value=0.00015  Score=61.57  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=73.2

Q ss_pred             HHHHhhhhcCC-CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHH
Q 024411           67 AYVGFYEVCSP-KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        67 a~~~l~~~~~~-~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      .+.++.+.... -.|++++|+|+ |++|..+++.++..|++|+++++++.+...+. ..+.+ +.+..   +.       
T Consensus       251 l~dgi~r~tg~~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~~le---e~-------  317 (488)
T 3ond_A          251 LPDGLMRATDVMIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VLTLE---DV-------  317 (488)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECCGG---GT-------
T ss_pred             HHHHHHHHcCCcccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cCCHH---HH-------
Confidence            33444443333 47899999998 79999999999999999999999888877776 55542 22111   10       


Q ss_pred             CCCCccEEEeCCCh-hhH-HhHHHhhhcCCEEEEEcc
Q 024411          146 FPEGIDIYFENVGG-KLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 ~~~~~d~v~d~~g~-~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                       ...+|+++++.|. ..+ ...++.+++++.++.+|.
T Consensus       318 -~~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~  353 (488)
T 3ond_A          318 -VSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGH  353 (488)
T ss_dssp             -TTTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSS
T ss_pred             -HHhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCC
Confidence             1258999999997 444 347888999999988875

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.81  E-value=9.2e-05  Score=58.23  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|+++ .++.++.+...+   +.+.. .  ..|..+.++....+.+..  .++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999998 444444333321   23332 2  234444323333333221  136


Q ss_pred             ccEEEeCCChh-h--------------------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          150 IDIYFENVGGK-L--------------------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       150 ~d~v~d~~g~~-~--------------------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +|++++++|.. .                          .+.+++.+.++|++|.+++....
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~  148 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR  148 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc
Confidence            99999988631 0                          12333444557899999875543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.81  E-value=0.00011  Score=58.58  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC---CC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG---FD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g---~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +++.+||+||++++|.++++.+...|++|++++++.++.+.+.+++.   .. .  ..|..+.++....+.+..  .+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL  106 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            56899999999999999999999999999999999887766653442   22 1  234444323333333221  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus       107 D~lVnnAg~  115 (283)
T 3v8b_A          107 DIVVANAGI  115 (283)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.80  E-value=0.00012  Score=58.23  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ..++++||+||++++|.+++..+...|++|++++++.++.+.+.+++   +...   ..|..+.++....+.+..  .+.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999999999999988766554333   3321   234444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999873

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.80  E-value=0.00017  Score=56.40  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhh---HHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEAD---LNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~---~~~~~~~~~~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+.+.+++   +.. .  ..|..+.++   +.+.+.+.  ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--CC
Confidence            4688999999999999999999999999999999888765554333   332 1  234444322   33334333  57


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        84 id~lv~nAg   92 (252)
T 3h7a_A           84 LEVTIFNVG   92 (252)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999999988

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.80  E-value=8.2e-05  Score=58.56  Aligned_cols=80  Identities=16%  Similarity=0.119  Sum_probs=56.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++.. ..  .|..+.+++.+.+.+..  .+++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            4679999999999999999999999999999999877666555355543 12  34444323333333221  1369999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        91 i~~Ag   95 (265)
T 2o23_A           91 VNCAG   95 (265)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99887

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.80  E-value=0.00019  Score=56.94  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-------------CHHHHHHHHH---hcCCCe---eeecCChhhHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-------------SKDKVDLLKN---KFGFDE---AFNYKEEADLN  139 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-------------~~~~~~~~~~---~~g~~~---v~~~~~~~~~~  139 (268)
                      .++++||+||++++|.++++.+...|++|+++++             +.++.+.+.+   ..+...   ..|..+.++..
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            5789999999999999999999999999999987             4555444331   223321   23444432333


Q ss_pred             HHHHHHC--CCCccEEEeCCCh
Q 024411          140 AALKRYF--PEGIDIYFENVGG  159 (268)
Q Consensus       140 ~~~~~~~--~~~~d~v~d~~g~  159 (268)
                      ..+.+..  .+.+|++++++|.
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            3333321  1369999999873

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.79  E-value=0.00027  Score=56.62  Aligned_cols=106  Identities=13%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHH---HhcCCCe---eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLK---NKFGFDE---AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~---~~~g~~~---v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||++++|..++..+...|++|++++++.  ++.+.+.   ++.+...   ..|..+.++....+.+..  .+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999998762  2333222   1334322   124444313322222221  13


Q ss_pred             CccEEEeCCCh-h---h-----------------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          149 GIDIYFENVGG-K---L-----------------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~-~---~-----------------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      ++|++++++|. .   .                       .+.+++.++++|++|.+++....
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~  190 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY  190 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc
Confidence            69999998873 1   0                       22344455567999999876543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.79  E-value=0.00029  Score=56.54  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH---HhcCCCee--eecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK---NKFGFDEA--FNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~---~~~g~~~v--~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      .++++||+||+|  ++|..+++.+...|++|++++++++..+.+.   ++.+....  .|..+.++..+.+.+...  +.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999987  9999999999999999999998865433322   13343322  344443233333332211  36


Q ss_pred             ccEEEeCCChh---------------h---------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          150 IDIYFENVGGK---------------L---------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       150 ~d~v~d~~g~~---------------~---------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +|++++++|..               .               .+.+++.+..+|++|.+++....
T Consensus       109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~  173 (296)
T 3k31_A          109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE  173 (296)
T ss_dssp             CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT
T ss_pred             CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc
Confidence            99999998731               0               12233445567899998875543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.79  E-value=0.0003  Score=55.18  Aligned_cols=80  Identities=19%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++ ++++.+.+.++   .+.. ..  .|..+.+++.+.+.+..  .++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999998 76655443322   2332 12  24444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        86 id~li~~Ag   94 (261)
T 1gee_A           86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.79  E-value=0.00037  Score=54.04  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ++.++||+||+|++|..+++.+...|++|+++++++++.+.+.++......  .|..+.+.+.+.+.  ..+.+|+++++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~id~vi~~   83 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALG--GIGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT--TCCCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHH--HcCCCCEEEEC
Confidence            467899999999999999999999999999999998877665533322222  24444312222222  12368999999


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        84 Ag   85 (244)
T 1cyd_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            88

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.78  E-value=0.00032  Score=56.23  Aligned_cols=107  Identities=12%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             CCCcEEEEecCcch--HHHHHHHHHHHcCCEEEEEeCCHHHHHHH---HHhcCCCee--eecCChhhHHHHHHHHC--CC
Q 024411           78 KHGECVFISAASGA--VGQLVGQFAKLLGCYVVGSAGSKDKVDLL---KNKFGFDEA--FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~--~G~~~i~l~~~~g~~V~~~~~~~~~~~~~---~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~  148 (268)
                      -.++++||+||+|+  +|.++++.+...|++|+++.++++..+.+   .++.+....  .|..+.++....+.+..  .+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            45789999999965  99999999999999999999886533332   213343222  34444323333333221  23


Q ss_pred             CccEEEeCCCh-h-----------------------------hHHhHHHhhhcCCEEEEEcccccc
Q 024411          149 GIDIYFENVGG-K-----------------------------LLDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~-~-----------------------------~~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      .+|++++++|. .                             ..+.+++.++.+|++|.+++....
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~  174 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE  174 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc
Confidence            69999999883 1                             023344455668999999875543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.78  E-value=8e-05  Score=58.88  Aligned_cols=105  Identities=16%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      ..++++||+||++++|.++++.+...|++|++++ ++.+..+.+.+   ..+...   ..|..+.++..+.+.+..  .+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999999999884 34444443321   233321   234444323333333221  13


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      ++|++++++|..                          ..+.+++.++.+|++|.+++..
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~  164 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQ  164 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChh
Confidence            699999998731                          0223444555678999987644

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.78  E-value=0.00015  Score=55.93  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      ++++||+||+|++|..++..+...|++|+++++++++.+.+.++++....  .|..+.+++.+.+.+..  .+++|++++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVN   84 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56899999999999999999999999999999998877766534432222  34444323333333221  136999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        85 ~Ag   87 (234)
T 2ehd_A           85 NAG   87 (234)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.78  E-value=0.00013  Score=56.99  Aligned_cols=81  Identities=17%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++....+.+..  .+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999999988776654333   322 1  224444323333332221  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.78  E-value=0.00035  Score=55.41  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------------HHHHHHHHH---hcCCCe---eeecCChhhHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------------KDKVDLLKN---KFGFDE---AFNYKEEADLNA  140 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  140 (268)
                      .++++||+||++++|..+++.+...|++|++++++            .++.+...+   ..+...   ..|..+.++...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            57899999999999999999999999999999876            454443321   234321   234444323333


Q ss_pred             HHHHHC--CCCccEEEeCCChh-------h---------------HHhHHHhhhc---CCEEEEEccccc
Q 024411          141 ALKRYF--PEGIDIYFENVGGK-------L---------------LDAVLPNMKI---RGRIAACGMISQ  183 (268)
Q Consensus       141 ~~~~~~--~~~~d~v~d~~g~~-------~---------------~~~~~~~l~~---~G~~v~~g~~~~  183 (268)
                      .+.+..  .+.+|++++++|..       .               .+.+++.+..   +|++|.+++..+
T Consensus        92 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~  161 (278)
T 3sx2_A           92 ALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAG  161 (278)
T ss_dssp             HHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHh
Confidence            333221  13699999998731       1               2233444433   689999887554

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.78  E-value=7.8e-05  Score=59.79  Aligned_cols=80  Identities=14%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---Ce----eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---DE----AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---~~----v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.+++..   ..    ..|..+.++....+.+..  .+.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999998876655434421   11    234444323333332221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       120 iD~lvnnAg  128 (293)
T 3rih_A          120 LDVVCANAG  128 (293)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.78  E-value=0.00012  Score=57.74  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      -.++++||+||+|++|..++..+...|++|++++++.++.+.+.+++   +.. .  ..|..+.++....+.+..  .+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35789999999999999999999999999999999988766554332   332 1  234444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.78  E-value=0.00018  Score=57.90  Aligned_cols=92  Identities=23%  Similarity=0.337  Sum_probs=70.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+.+++|+|+ |.+|..+++.++.+|++|++.+++.++.+.+. ++|.. +++..   ++.+.+     ..+|+|+.++
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~-~~~~~---~l~~~l-----~~aDvVi~~~  223 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARIT-EMGLV-PFHTD---ELKEHV-----KDIDICINTI  223 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCE-EEEGG---GHHHHS-----TTCSEEEECC
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCe-EEchh---hHHHHh-----hCCCEEEECC
Confidence            46889999997 99999999999999999999999988777666 66653 33221   333222     2589999999


Q ss_pred             ChhhH-HhHHHhhhcCCEEEEEcc
Q 024411          158 GGKLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      +...+ ...+..+++++.++.++.
T Consensus       224 p~~~i~~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          224 PSMILNQTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             SSCCBCHHHHTTSCTTCEEEECSS
T ss_pred             ChhhhCHHHHHhCCCCCEEEEEeC
Confidence            86332 456778899999998875

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.78  E-value=0.00014  Score=56.85  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----C-CCe--eeec--CChhhHHHHHHHHC--
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----G-FDE--AFNY--KEEADLNAALKRYF--  146 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g-~~~--v~~~--~~~~~~~~~~~~~~--  146 (268)
                      -.++++||+||++++|.++++.+...|++|+++++++++.+.+.+++    + ...  ..|.  .+.++..+.+.+..  
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999988766554232    2 111  2343  33212333232221  


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      .+.+|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2369999999873

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.77  E-value=0.00024  Score=59.41  Aligned_cols=101  Identities=19%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             HHHHhhhhc-CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHH
Q 024411           67 AYVGFYEVC-SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        67 a~~~l~~~~-~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      .+.++.+.. ..-.|++++|+|. |.+|..+++.++.+|++|+++.+++.+...+. ..|.. +.      ++.+.++  
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-~~G~~-vv------~LeElL~--  301 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEVDPICALQAA-MDGFE-VV------TLDDAAS--  301 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCE-EC------CHHHHGG--
T ss_pred             HHHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-hcCce-ec------cHHHHHh--
Confidence            444554433 3568999999997 99999999999999999999998877655554 45543 22      2322232  


Q ss_pred             CCCCccEEEeCCChh-hH-HhHHHhhhcCCEEEEEccc
Q 024411          146 FPEGIDIYFENVGGK-LL-DAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       146 ~~~~~d~v~d~~g~~-~~-~~~~~~l~~~G~~v~~g~~  181 (268)
                         ..|+++.+.|.. .+ ...+..+++++.++.+|-.
T Consensus       302 ---~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          302 ---TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             ---GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSS
T ss_pred             ---hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCC
Confidence               489999999874 33 5888999999999998763

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.77  E-value=0.00031  Score=54.17  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe-e--eecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE-A--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++++||+||+|++|..+++.+...|++|++++++.++.+.+.+++    +... .  .|..+.++..+.+.+..  .+++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999999988766544222    3321 2  24444312222222111  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        82 d~li~~Ag~   90 (235)
T 3l77_A           82 DVVVANAGL   90 (235)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.77  E-value=0.00016  Score=56.94  Aligned_cols=80  Identities=15%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++....+.+..  .+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999999999999999999987766544233   332 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        86 d~lv~nAg   93 (262)
T 1zem_A           86 DFLFNNAG   93 (262)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.77  E-value=0.0001  Score=58.68  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e----eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E----AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~----v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++++.+.+.+++   +..  .    ..|..+.++....+.+..  .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999988765544233   321  1    124444323333333321  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      +.+|++++++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            369999999884

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.77  E-value=9.5e-05  Score=58.87  Aligned_cols=80  Identities=23%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC---CCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG---FDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g---~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.+++.   ...   ..|..+.+.....+.+..  .+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999999887766654442   221   124444323332232221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        87 D~lvnnAg   94 (280)
T 3tox_A           87 DTAFNNAG   94 (280)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.77  E-value=0.00017  Score=56.89  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      -.++++||+||++++|..+++.+...|++|++++++.++.+.+.+++   +...   ..|..+.++..+.+.+..  .+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999999999999988766654333   3321   234444323333333221  236


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999998863

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.76  E-value=0.0001  Score=58.55  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=55.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++..+.+.+..  .+++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999999999999887665544232   322 2  234444323333333221  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus       111 D~lvnnAg~  119 (276)
T 3r1i_A          111 DIAVCNAGI  119 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.76  E-value=8.2e-05  Score=58.41  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|++++++.++.+.+.++   .+...   ..|..+.++....+.+..  .+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   90 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI   90 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            568999999999999999999999999999999998876655423   23321   224444323333333221  1369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        91 d~lv~nAg~   99 (256)
T 3gaf_A           91 TVLVNNAGG   99 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.76  E-value=0.0001  Score=58.08  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||++++|.++++.+...|++|+++.++..   +.+.+.+++   +...   ..|..+.++....+.+..  .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999876533   333332222   3221   234444323333333221  1


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus        90 g~iD~lvnnAg  100 (262)
T 3ksu_A           90 GKVDIAINTVG  100 (262)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999988

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.76  E-value=0.00015  Score=57.62  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=55.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+.+.+++    +...   ..|..+.++....+.+..  .+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~  105 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGR  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999987655443232    3321   234444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       106 id~lv~nAg  114 (277)
T 4fc7_A          106 IDILINCAA  114 (277)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999998

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.75  E-value=0.00017  Score=59.21  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=54.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-----------HHHHHHhcCCCe---eeecCChhhHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-----------VDLLKNKFGFDE---AFNYKEEADLNAALKR  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-----------~~~~~~~~g~~~---v~~~~~~~~~~~~~~~  144 (268)
                      .++++||+||++++|.+++..+...|++|++++++.++           .+.++ ..+...   ..|..+.++....+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~-~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE-AVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHH
Confidence            57899999999999999999999999999999987653           22233 344321   2355554233333333


Q ss_pred             HC--CCCccEEEeCCC
Q 024411          145 YF--PEGIDIYFENVG  158 (268)
Q Consensus       145 ~~--~~~~d~v~d~~g  158 (268)
                      ..  .+++|++++++|
T Consensus       123 ~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          123 AIKKFGGIDILVNNAS  138 (346)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            21  136999999988

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.75  E-value=0.00011  Score=58.27  Aligned_cols=80  Identities=15%  Similarity=0.329  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..++..+...|++|+++++++++.+.+.++   .+.. .  ..|..+.++....+.+..  .+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999999998776554322   2332 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus       107 D~lvnnAg  114 (270)
T 3ftp_A          107 NVLVNNAG  114 (270)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.75  E-value=0.00015  Score=57.66  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++..  . .  ..|..+.+.+.+.+.+..  .+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            468899999999999999999999999999999998876655434321  1 1  124444323333333221  24699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus       108 ~lvnnAg  114 (276)
T 2b4q_A          108 ILVNNAG  114 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.75  E-value=0.00013  Score=57.62  Aligned_cols=80  Identities=11%  Similarity=0.234  Sum_probs=54.6

Q ss_pred             CCcEEEEecC--cchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhcCCC-e--eeecCChhhHHHHHH---HHCC--
Q 024411           79 HGECVFISAA--SGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKNKFGFD-E--AFNYKEEADLNAALK---RYFP--  147 (268)
Q Consensus        79 ~~~~vlI~ga--~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~~~g~~-~--v~~~~~~~~~~~~~~---~~~~--  147 (268)
                      .++++||+||  +|++|..+++.+...|++|+++++++++ .+.+.++++.. .  ..|..+.++....+.   +..+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999998  8999999999999999999999988765 35554344432 1  234444323333332   2222  


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus        86 ~~iD~lv~nAg   96 (269)
T 2h7i_A           86 NKLDGVVHSIG   96 (269)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEECCc
Confidence            16999999987

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.75  E-value=0.00016  Score=56.29  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++ ++++.+.+.++   .+.. .  ..|..+.++..+.+.+..  .++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999998 76665544322   2432 1  224444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        83 id~lv~nAg   91 (246)
T 2uvd_A           83 VDILVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.75  E-value=0.00011  Score=57.91  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=55.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCC--e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGFD--E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~~--~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+.+.++    .+..  .  ..|..+.++....+.+..  .+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998876554423    2222  1  134444323333332221  13


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|++++++|.
T Consensus        87 ~id~lvnnAg~   97 (265)
T 3lf2_A           87 CASILVNNAGQ   97 (265)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.74  E-value=0.00017  Score=56.35  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHH-HHHhcCCCe---eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDL-LKNKFGFDE---AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~-~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..++..+...|++|+++++++ ++.+. ++ +.+...   ..|..+.++....+.+..  .+++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999999999999999999999999999887 55443 33 455321   234444323333333221  13699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        85 ~lv~nAg   91 (249)
T 2ew8_A           85 ILVNNAG   91 (249)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.74  E-value=0.00019  Score=56.81  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+.+...+.+..  .+++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  109 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV  109 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            4689999999999999999999999999999999987765543232   332 1  234444323333333221  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus       110 D~li~~Ag  117 (272)
T 1yb1_A          110 SILVNNAG  117 (272)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999987

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.74  E-value=0.00018  Score=56.55  Aligned_cols=80  Identities=16%  Similarity=0.309  Sum_probs=55.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHH---HHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNA---ALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~---~~~~~~~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++..+   .+.+..++.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999999999999999999999999999987765543232   332 1  224444323332   333333257


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        88 id~lv~~Ag   96 (260)
T 2ae2_A           88 LNILVNNAG   96 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.74  E-value=0.00022  Score=55.37  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHh---cCCC-ee-e--ecCChhhHHHHHHHHC--CCCc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNK---FGFD-EA-F--NYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~---~g~~-~v-~--~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      +++||+||+|++|..+++.+...|++|+++ .+++++.+.+.++   .+.. .. +  |..+.+.....+.+..  .+++
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGL   81 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999999999998 7787765544322   2332 12 2  4444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        82 d~li~~Ag   89 (245)
T 2ph3_A           82 DTLVNNAG   89 (245)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.74  E-value=9.5e-05  Score=57.15  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|||+||+|++|..+++.+...|++|+++++++++.+.+. ..+...++..+-  .  +.+.+.. +++|+++.++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~Dl--~--~~~~~~~-~~~D~vi~~ag   93 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-ERGASDIVVANL--E--EDFSHAF-ASIDAVVFAAG   93 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HTTCSEEEECCT--T--SCCGGGG-TTCSEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH-hCCCceEEEccc--H--HHHHHHH-cCCCEEEECCC
Confidence            4678999999999999999999999999999999998887776 555512222211  1  1222222 26999999998


Q ss_pred             hhh--------------HHhHHHhhhc--CCEEEEEcccc
Q 024411          159 GKL--------------LDAVLPNMKI--RGRIAACGMIS  182 (268)
Q Consensus       159 ~~~--------------~~~~~~~l~~--~G~~v~~g~~~  182 (268)
                      ...              ....++.++.  .+++|.++...
T Consensus        94 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           94 SGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            421              1233344433  36898887744

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.72  E-value=0.00021  Score=55.97  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++   .+.. .  ..|..+.+++.+.+.+..  .+++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            468899999999999999999999999999999988765543322   2332 1  234444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.72  E-value=0.00045  Score=57.79  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=68.9

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .-.|.+|.|.|. |.+|..+++.++.+|++|++.++++.+...+. ..|.. +.      ++.+.++     ..|+++.+
T Consensus       208 ~L~GktVgIiG~-G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~-~~------sL~eal~-----~ADVVilt  273 (436)
T 3h9u_A          208 MIAGKTACVCGY-GDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQ-VL------LVEDVVE-----EAHIFVTT  273 (436)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHTT-----TCSEEEEC
T ss_pred             cccCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCe-ec------CHHHHHh-----hCCEEEEC
Confidence            346899999996 99999999999999999999998887766665 55643 11      2332332     48999988


Q ss_pred             CCh-hhH-HhHHHhhhcCCEEEEEcc
Q 024411          157 VGG-KLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g~-~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .+. ..+ ...++.++++..++.++.
T Consensus       274 ~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          274 TGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             SSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             CCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            886 333 377888999999888875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.72  E-value=0.00027  Score=55.52  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHH---CCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRY---FPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~---~~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.++....+.+.   ..+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999999987765544233   332 1  22444432333333332   1357


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999994

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.72  E-value=0.00013  Score=57.75  Aligned_cols=80  Identities=21%  Similarity=0.379  Sum_probs=56.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||++++|..+++.+...|++|+++++++++.+.+.+++   +...   ..|..+.++..+.+.+..  .+++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            5789999999999999999999999999999999988766554333   3321   124444323333333221  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus       105 D~lv~nAg  112 (271)
T 4ibo_A          105 DILVNNAG  112 (271)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999988

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.72  E-value=0.00012  Score=58.09  Aligned_cols=81  Identities=15%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC---C-e--eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF---D-E--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~---~-~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++   ..   . .  ..|..+.++....+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999999999988776654343   21   1 1  234444323333333221  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      +++|++++++|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            369999999873

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.71  E-value=4.4e-05  Score=60.32  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|..++..+...|++|++++++.++.+.+. ..... ...|..+.++....+.+..  .+++|++++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4689999999999999999999999999999999877665432 11111 1234444323333333221  136999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9883

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.71  E-value=0.00016  Score=56.34  Aligned_cols=77  Identities=18%  Similarity=0.057  Sum_probs=54.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEE-e--CCHHHHHHHHHhc-CCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGS-A--GSKDKVDLLKNKF-GFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~--~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ++++||+||+|++|..+++.+...|++|+++ .  +++++.+.+.+++ +. .+.+...-..+.+.+.+.. +++|++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHG-EAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGS-SCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHc-CCCCEEEE
Confidence            3679999999999999999999999999999 6  8888777665455 22 2333332213444444332 36999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        79 ~Ag   81 (244)
T 1zmo_A           79 NDY   81 (244)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.71  E-value=0.00012  Score=57.47  Aligned_cols=78  Identities=13%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~~d~v~  154 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++ +.+.++++. ..  .|..+.++....+.+..  .+++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999988776 443324432 22  34444323333333221  13699999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus        83 ~~Ag   86 (256)
T 2d1y_A           83 NNAA   86 (256)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9987

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.70  E-value=0.00012  Score=58.30  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC---C-e--eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF---D-E--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~---~-~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.   . .  ..|..+.++....+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999988766544232   22   1 1  234444323333333221  1


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999987

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.70  E-value=0.00014  Score=57.25  Aligned_cols=80  Identities=13%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhc----CCCe-e--eecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-VDLLKNKF----GFDE-A--FNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-~~~~~~~~----g~~~-v--~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++ .+.+.+++    +... .  .|..+.+++...+.+..  .+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999988766 54443232    4321 1  24444323333333221  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ++|++++++|
T Consensus        83 ~iD~lv~~Ag   92 (260)
T 1x1t_A           83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.70  E-value=0.00022  Score=56.03  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++   .+...   ..|..+.++....+.+..  .+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999998766544322   23321   224444323333332221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        93 D~lv~~Ag  100 (260)
T 2zat_A           93 DILVSNAA  100 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.69  E-value=0.00013  Score=57.34  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=50.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC--eeeecCChhhH---HHHHHHHCCCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADL---NAALKRYFPEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~---~~~~~~~~~~~~d~v  153 (268)
                      +|+++||+||++|+|.++++.+...|++|+++.++.++      .....  ...|..+.++.   .+.+.+.. |++|++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDil   82 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE------GLPEELFVEADLTTKEGCAIVAEATRQRL-GGVDVI   82 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT------TSCTTTEEECCTTSHHHHHHHHHHHHHHT-SSCSEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh------CCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            68999999999999999999999999999999986431      11111  12344443232   23333322 479999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        83 VnnAG   87 (261)
T 4h15_A           83 VHMLG   87 (261)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99876

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.68  E-value=0.00026  Score=56.05  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=55.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D-E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~-~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.++++.  . .  ..|..+.+++...+.+..  .+++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999999999999999999999999999988766555434432  1 1  224444323333333221  13699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        95 ~li~~Ag  101 (278)
T 2bgk_A           95 IMFGNVG  101 (278)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999887

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.68  E-value=0.0002  Score=55.77  Aligned_cols=79  Identities=19%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++++||+||+|++|..++..+...|++|+++++++++.+.+.+++    +.. .  ..|..+.+++.+.+.+..  .+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            568999999999999999999999999999999988766554333    221 1  224444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.68  E-value=0.0002  Score=56.81  Aligned_cols=80  Identities=13%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhc----CCC-ee--eecCCh----hhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKF----GFD-EA--FNYKEE----ADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~----g~~-~v--~~~~~~----~~~~~~~~~~~  146 (268)
                      .++++||+||+|++|..++..+...|++|+++++ ++++.+.+.+++    +.. ..  .|..+.    +.+...+.+..
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999 877665543233    432 11  233332    23333333221


Q ss_pred             --CCCccEEEeCCC
Q 024411          147 --PEGIDIYFENVG  158 (268)
Q Consensus       147 --~~~~d~v~d~~g  158 (268)
                        .+++|++++++|
T Consensus        90 ~~~g~id~lv~nAg  103 (276)
T 1mxh_A           90 RAFGRCDVLVNNAS  103 (276)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              136999999987

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.68  E-value=0.00035  Score=53.36  Aligned_cols=92  Identities=9%  Similarity=-0.037  Sum_probs=62.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++++++...+. ..+... ..|..+. +.    ...  +++|+|+.++|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~-~~----~~~--~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVL-TE----ADL--DSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGC-CH----HHH--TTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccc-cH----hhc--ccCCEEEECCccC
Confidence            5899999999999999999999999999999988776554 233322 2244332 22    111  3599999999752


Q ss_pred             -----------hHHhHHHhhhc-CCEEEEEccc
Q 024411          161 -----------LLDAVLPNMKI-RGRIAACGMI  181 (268)
Q Consensus       161 -----------~~~~~~~~l~~-~G~~v~~g~~  181 (268)
                                 .....++.++. ++++|.+++.
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence                       12344444443 4788888654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.67  E-value=0.00014  Score=58.49  Aligned_cols=80  Identities=20%  Similarity=0.330  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC---C-e--eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF---D-E--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~---~-~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.   . .  ..|..+.++....+.+..  .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            4688999999999999999999999999999999988765543232   32   1 1  234444323333333221  1


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus       105 g~iD~lvnnAG  115 (297)
T 1xhl_A          105 GKIDILVNNAG  115 (297)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999987

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.67  E-value=0.00036  Score=54.96  Aligned_cols=81  Identities=12%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCCee--eecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSK---DKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~---~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      .++++||+||+  |++|..+++.+...|++|+++++++   +..+.+.++.+....  .|..+.++..+.+.+...  ++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46789999998  9999999999999999999999876   333444323333222  354444234444443322  37


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        88 iD~lv~~Ag~   97 (265)
T 1qsg_A           88 FDGFVHSIGF   97 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.67  E-value=0.00075  Score=49.92  Aligned_cols=93  Identities=14%  Similarity=0.115  Sum_probs=64.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeee-ecCChhhHHHHHHHH-CCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAF-NYKEEADLNAALKRY-FPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~-~~~~~d~v~d~  156 (268)
                      +.+|+|+|+ |.+|..+++.++.. |.+|+++++++++.+.++ +.|...+. |..+.    +.+.+. .-.++|+++.+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-~~g~~~~~gd~~~~----~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR-SEGRNVISGDATDP----DFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-HTTCCEEECCTTCH----HHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-HCCCCEEEcCCCCH----HHHHhccCCCCCCEEEEe
Confidence            567999996 99999999999998 999999999999988888 77765332 33322    233333 12379999999


Q ss_pred             CCh-hhHHhHHHhh---hcCCEEEEE
Q 024411          157 VGG-KLLDAVLPNM---KIRGRIAAC  178 (268)
Q Consensus       157 ~g~-~~~~~~~~~l---~~~G~~v~~  178 (268)
                      +++ .........+   .+..+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          113 MPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            986 3333333334   344565553

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.67  E-value=0.00018  Score=56.35  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=61.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +++||+||+|++|..+++.+...|++|+++++++++.+       .....|..+.+...+.+.+ ..+++|++++++|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------~~~~~Dl~~~~~v~~~~~~-~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-------ADLSTAEGRKQAIADVLAK-CSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------CCTTSHHHHHHHHHHHHTT-CTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc-------cccccCCCCHHHHHHHHHH-hCCCCCEEEECCCCC
Confidence            47999999999999999999999999999998754321       0111122221122222222 224689999998842


Q ss_pred             h-------------------HHhHHHhhhcC--CEEEEEcccccc
Q 024411          161 L-------------------LDAVLPNMKIR--GRIAACGMISQY  184 (268)
Q Consensus       161 ~-------------------~~~~~~~l~~~--G~~v~~g~~~~~  184 (268)
                      .                   .+.+++.+...  |++|.+++....
T Consensus        74 ~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           74 PQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             TTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             CCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1                   23445555443  899999876543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.67  E-value=0.00027  Score=54.96  Aligned_cols=80  Identities=20%  Similarity=0.461  Sum_probs=55.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK----FGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+.+.++    .+.. ..  .|..+.+.+...+.+..  .++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999988766554322    2432 12  24444323333333221  236


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|+++.++|
T Consensus        86 ~d~vi~~Ag   94 (248)
T 2pnf_A           86 IDILVNNAG   94 (248)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.67  E-value=0.00027  Score=56.76  Aligned_cols=80  Identities=14%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++    +.. .  ..|..+.+++...+.+..  .+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999987765443232    432 1  234444323333333221  236


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999987

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.66  E-value=0.00044  Score=53.60  Aligned_cols=79  Identities=24%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      ++++||+||+|++|..+++.+...|++|+++ .+++++.+.+.++   .+.. .  ..|..+.+++...+.+..  .+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999995 7777665544322   2332 1  124444323333333221  2369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus        81 d~li~~Ag   88 (244)
T 1edo_A           81 DVVVNNAG   88 (244)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.65  E-value=0.00037  Score=54.55  Aligned_cols=79  Identities=16%  Similarity=0.281  Sum_probs=52.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK--VDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~--~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++  .+.+. ..+...   ..|..+.+++...+.+..  .+++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIA-RHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-TTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH-hcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            36789999999999999999999999999999887641  22222 224321   124444323333333221  13699


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        82 ~lv~~Ag   88 (255)
T 2q2v_A           82 ILVNNAG   88 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.65  E-value=0.00021  Score=56.60  Aligned_cols=79  Identities=15%  Similarity=0.244  Sum_probs=56.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-e--eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D-E--AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~-~--v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      +++||+||+|++|..+++.+...|++|+++++++++.+.+.+++..  . .  ..|..+.+.....+.+...  +.+|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            7899999999999999999999999999999998877665534432  1 1  2344444234444443322  368999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.65  E-value=0.00033  Score=54.49  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC--Cee--eec--CChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF--DEA--FNY--KEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~--~~v--~~~--~~~~~~~~~~~~~~--~  147 (268)
                      .+++++|+||+|++|..++..+...|++|+++++++++.+.+.+++   +.  ..+  .+.  .+.++....+.+..  .
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~   92 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF   92 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999988766554332   21  122  232  22213332222221  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      +.+|++++++|.
T Consensus        93 g~id~lv~nAg~  104 (247)
T 3i1j_A           93 GRLDGLLHNASI  104 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            369999998873

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.65  E-value=0.00017  Score=56.51  Aligned_cols=77  Identities=16%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--hcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN--KFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~--~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +++||+||+|++|..+++.+...|++|+++++++++.+.+.+  ..+.. ..++...-..+.+.+.+.. +++|++++++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~-g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHh-CCCCEEEECC
Confidence            468999999999999999999999999999988776554431  22432 2223222112333333322 3699999988


Q ss_pred             C
Q 024411          158 G  158 (268)
Q Consensus       158 g  158 (268)
                      |
T Consensus        81 g   81 (254)
T 1zmt_A           81 I   81 (254)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.64  E-value=4.7e-05  Score=59.19  Aligned_cols=77  Identities=12%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH---HHHHHHCC-CCccEE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN---AALKRYFP-EGIDIY  153 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~~~~~-~~~d~v  153 (268)
                      ..++++||+||+|++|..+++.+...|++|+++++++++.+.   .. .....|..+.++..   +.+.+..+ +++|++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~-~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~l   80 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS---AS-VIVKMTDSFTEQADQVTAEVGKLLGDQKVDAI   80 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS---EE-EECCCCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC---Cc-EEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            456889999999999999999999999999999987653210   00 00012322221222   23333222 479999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        81 v~~Ag   85 (241)
T 1dhr_A           81 LCVAG   85 (241)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            99987

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.63  E-value=3.6e-05  Score=59.65  Aligned_cols=73  Identities=18%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHH---HHHHHHCC-CCccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLN---AALKRYFP-EGIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~---~~~~~~~~-~~~d~v  153 (268)
                      ++++||+||+|++|..+++.+...|++|+++++++++.+.   .   ...  .|..+.++..   +.+.+..+ +++|++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~---~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD---S---NILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS---E---EEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc---c---cEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            5789999999999999999999999999999987654210   0   011  1222221222   23333222 479999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        77 v~~Ag   81 (236)
T 1ooe_A           77 FCVAG   81 (236)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99988

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.63  E-value=0.00042  Score=54.34  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHH--
Q 024411           79 HGECVFISAASGAVGQLVGQFAKL---LGCYVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRY--  145 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~---~g~~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~--  145 (268)
                      .++++||+||+|++|..++..+..   .|++|+++++++++.+.+.+++     +.. .  ..|..+.++....+.+.  
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            467899999999999999888887   8999999999988766554333     322 1  23444432343334333  


Q ss_pred             --CCCCcc--EEEeCCC
Q 024411          146 --FPEGID--IYFENVG  158 (268)
Q Consensus       146 --~~~~~d--~v~d~~g  158 (268)
                        ..+.+|  ++++++|
T Consensus        85 ~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             ccccccCCccEEEECCc
Confidence              223577  9999887

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.63  E-value=0.00052  Score=54.80  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-eeeecCChhhHHHHHHHHCCCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-EAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      -++++++|+||+|++|.+++..+...|++|+++.++.++.+.+.+++    +.. ...|..+. +   .+.+... .+|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~-~---~~~~~~~-~~Dv  191 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD-A---SRAEAVK-GAHF  191 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH-H---HHHHHTT-TCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCH-H---HHHHHHH-hCCE
Confidence            36789999998999999999999999999999999987766544233    222 22344432 2   2322222 4899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++++|.
T Consensus       192 lVn~ag~  198 (287)
T 1lu9_A          192 VFTAGAI  198 (287)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999973

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.62  E-value=0.00037  Score=54.75  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---C-------C-Cee--eecCChhhHHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---G-------F-DEA--FNYKEEADLNAALKRY  145 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g-------~-~~v--~~~~~~~~~~~~~~~~  145 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+++   +       . ...  .|..+.+.+...+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999988766654233   1       1 112  2444332333333322


Q ss_pred             C--CCCc-cEEEeCCC
Q 024411          146 F--PEGI-DIYFENVG  158 (268)
Q Consensus       146 ~--~~~~-d~v~d~~g  158 (268)
                      .  .+.+ |++++++|
T Consensus        86 ~~~~g~i~d~vi~~Ag  101 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAG  101 (264)
T ss_dssp             HHHHSSCCSEEEECCC
T ss_pred             HHHhCCCCeEEEECCC
Confidence            1  1346 99999987

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.62  E-value=0.00027  Score=55.63  Aligned_cols=80  Identities=23%  Similarity=0.399  Sum_probs=55.4

Q ss_pred             CCcEEEEecCcc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e--eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASG-AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E--AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g-~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~--v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||+| ++|..++..+...|++|++++++.++.+.+.+++   +..  .  ..|..+.++....+.+..  .+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            578999999986 8999999999999999999999988766654343   211  1  234444323333333221  13


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++++|
T Consensus       101 ~id~li~~Ag  110 (266)
T 3o38_A          101 RLDVLVNNAG  110 (266)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            6999999988

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.62  E-value=0.00028  Score=55.13  Aligned_cols=80  Identities=24%  Similarity=0.327  Sum_probs=54.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.++   .+.. ..  .|..+.+.+.+.+.+..  .+++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999999998765544322   2332 11  24444323333333211  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |+++.++|
T Consensus        90 d~vi~~Ag   97 (255)
T 1fmc_A           90 DILVNNAG   97 (255)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00031  Score=56.14  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhc-----CCC-e--eeecCChhhHHHHHHHHCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC---YVVGSAGSKDKVDLLKNKF-----GFD-E--AFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~---~V~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~~~~~~~  147 (268)
                      .++++||+||++++|.+++..+...|+   +|++++++.++.+.+.+++     +.. .  ..|..+.++....+.+...
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            468999999999999999988877776   9999999988776654333     222 1  2344444245555544332


Q ss_pred             --CCccEEEeCCC
Q 024411          148 --EGIDIYFENVG  158 (268)
Q Consensus       148 --~~~d~v~d~~g  158 (268)
                        +++|++++++|
T Consensus       112 ~~g~iD~lVnnAG  124 (287)
T 3rku_A          112 EFKDIDILVNNAG  124 (287)
T ss_dssp             GGCSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence              37999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.62  E-value=0.0008  Score=47.45  Aligned_cols=93  Identities=18%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-ecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF-NYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .++++|.|+ |.+|..+++.++..|.+|+++++++++.+.++ +.|...+. |....    +.+++..-..+|.++-+++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~-~~g~~~i~gd~~~~----~~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELR-ERGVRAVLGNAANE----EIMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEESCTTSH----HHHHHTTGGGCSEEEECCS
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HcCCCEEECCCCCH----HHHHhcCcccCCEEEEECC
Confidence            467999997 99999999999999999999999999999988 67764332 22222    2333322237999999988


Q ss_pred             hhh----HHhHHHhhhcCCEEEEE
Q 024411          159 GKL----LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       159 ~~~----~~~~~~~l~~~G~~v~~  178 (268)
                      ...    +-...+.+.+..+++..
T Consensus        81 ~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           81 NGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ChHHHHHHHHHHHHHCCCCeEEEE
Confidence            632    22344555566666654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.62  E-value=0.00036  Score=56.05  Aligned_cols=80  Identities=16%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--------CCC-ee--eecCChhhHHHHHHHHC-
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--------GFD-EA--FNYKEEADLNAALKRYF-  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--------g~~-~v--~~~~~~~~~~~~~~~~~-  146 (268)
                      .++++||+||+|++|..+++.+...|++|++++++.++.+.+.+++        +.. ..  .|..+.+.+...+.+.. 
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999987765543232        222 11  24444323333333221 


Q ss_pred             -CCCccEEEeCCC
Q 024411          147 -PEGIDIYFENVG  158 (268)
Q Consensus       147 -~~~~d~v~d~~g  158 (268)
                       .+.+|++++++|
T Consensus        97 ~~g~id~li~~Ag  109 (303)
T 1yxm_A           97 TFGKINFLVNNGG  109 (303)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             136999999988

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.61  E-value=0.00032  Score=53.38  Aligned_cols=91  Identities=18%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++++++.+.+.  .+... ..|..+. +. +.+     +++|+++.++|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~-~~-~~~-----~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDL-TL-SDL-----SDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGC-CH-HHH-----TTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccCh-hh-hhh-----cCCCEEEECCcCC
Confidence            5899999999999999999999999999999987766442  22221 2233332 22 222     3599999999852


Q ss_pred             ---------hHHhHHHhhhc--CCEEEEEccc
Q 024411          161 ---------LLDAVLPNMKI--RGRIAACGMI  181 (268)
Q Consensus       161 ---------~~~~~~~~l~~--~G~~v~~g~~  181 (268)
                               .....++.++.  .++++.+++.
T Consensus        73 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           73 PDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             TTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             ccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence                     22455556655  3688888654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.60  E-value=0.00029  Score=55.47  Aligned_cols=81  Identities=15%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHH---HHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALK---RYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~---~~~~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+.+...+.   +..+++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999999999999887665543222   332 1  124333312332222   222246


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999998873

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.60  E-value=0.00029  Score=55.22  Aligned_cols=79  Identities=10%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK--VDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~--~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ++++||+||+|++|..+++.+...|++|+++++++++  .+.+.+++   +.. .  ..|..+.+++...+.+..  -++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999988765  44433232   322 1  124444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        82 iD~lv~nAg   90 (258)
T 3a28_C           82 FDVLVNNAG   90 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.59  E-value=0.00034  Score=54.41  Aligned_cols=77  Identities=18%  Similarity=0.335  Sum_probs=54.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+. ++....  ..|..+.+.+. .+.+.. +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~-~~~~~~-~~id~lv~~   81 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQID-QFANEV-ERLDVLFNV   81 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHH-HHHHHC-SCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHH-HHHHHh-CCCCEEEEC
Confidence            4688999999999999999999999999999999887765544 332111  23444431333 333322 469999999


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        82 Ag   83 (246)
T 2ag5_A           82 AG   83 (246)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.59  E-value=0.00029  Score=56.19  Aligned_cols=81  Identities=12%  Similarity=0.321  Sum_probs=55.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..+++.+...|++|+++.+++++.+.+.+++   +...   ..|..+.+.+.+.+.+..  .+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999988877665543232   3321   234444323333333221  2369


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.59  E-value=0.00037  Score=55.44  Aligned_cols=81  Identities=12%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhc----CCCe---eeecCChhhHHHHHHHHC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKF----GFDE---AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      .++++||+||++++|..+++.+...|++|+++++ +.++.+.+.+++    +...   ..|..+.++....+.+..  .+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            4689999999999999999999999999999998 555544433232    2221   124444323333333221  23


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|++++++|.
T Consensus       104 ~iD~lv~nAg~  114 (281)
T 3v2h_A          104 GADILVNNAGV  114 (281)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.58  E-value=0.00041  Score=55.02  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++++||+||+|++|..++..+...|++|+++++++++.+.+.+   ..+.. ..  .|..+.+++...+.+..  .+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            46889999999999999999998899999999987654433321   23432 12  24444323333333221  1369


Q ss_pred             cEEEeCCC
Q 024411          151 DIYFENVG  158 (268)
Q Consensus       151 d~v~d~~g  158 (268)
                      |++++++|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999887

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.57  E-value=0.00036  Score=55.64  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC----------------HHHHHHHHHh---cCCCe---eeecCChh
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS----------------KDKVDLLKNK---FGFDE---AFNYKEEA  136 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~----------------~~~~~~~~~~---~g~~~---v~~~~~~~  136 (268)
                      .++++||+||++++|.++++.+...|++|++++++                .++.+.+.++   .+...   ..|..+.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            57899999999999999999999999999999876                5555444322   23221   23444432


Q ss_pred             hHHHHHHHHC--CCCccEEEeCCC
Q 024411          137 DLNAALKRYF--PEGIDIYFENVG  158 (268)
Q Consensus       137 ~~~~~~~~~~--~~~~d~v~d~~g  158 (268)
                      +....+.+..  .+.+|++++++|
T Consensus        90 ~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           90 ALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCc
Confidence            3333333221  136999999987

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.57  E-value=0.00042  Score=55.20  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe--e--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE--A--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~--v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +++++||+||+|++|..+++.+...|++|+++++++++.+.+.++   .+...  .  .|..+.+.....+.+..  .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998876654322   24321  2  24444312332222211  136


Q ss_pred             ccEEEeCC
Q 024411          150 IDIYFENV  157 (268)
Q Consensus       150 ~d~v~d~~  157 (268)
                      +|++++++
T Consensus       107 iD~li~na  114 (286)
T 1xu9_A          107 LDMLILNH  114 (286)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99999883

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.56  E-value=0.00022  Score=55.77  Aligned_cols=81  Identities=20%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..++..+...|++|++++++ +++.+.+.+++   +.. ..  .|..+.+.+...+.+..  .++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999999999987 55554433222   322 12  24444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998873

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.55  E-value=0.00051  Score=54.59  Aligned_cols=80  Identities=20%  Similarity=0.214  Sum_probs=53.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------------HHHHHHHHH---hcCCCe---eeecCChhhHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------------KDKVDLLKN---KFGFDE---AFNYKEEADLNA  140 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  140 (268)
                      .++++||+||++++|.++++.+...|++|++++++            .++.+...+   ..+...   ..|..+.++..+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            56899999999999999999999999999999986            443333221   334322   224444323333


Q ss_pred             HHHHHC--CCCccEEEeCCC
Q 024411          141 ALKRYF--PEGIDIYFENVG  158 (268)
Q Consensus       141 ~~~~~~--~~~~d~v~d~~g  158 (268)
                      .+.+..  .+++|++++++|
T Consensus        89 ~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHhcCCCCEEEECCC
Confidence            333221  136999999987

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.55  E-value=9.3e-05  Score=57.73  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.+.   +  ...|..+.++..+.+.+..  .+++|+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4688999999999999999999999999999998765432211   1  2234444323333333221  1368999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            873

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.55  E-value=0.00024  Score=56.12  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||++++|..+++.+...|++|+++++ +.++.+.+.+   ..+...   ..|..+.++....+.+..  .++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887 5554444332   233321   234444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       107 id~lv~nAg~  116 (269)
T 4dmm_A          107 LDVLVNNAGI  116 (269)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00024  Score=55.60  Aligned_cols=80  Identities=23%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      ++++||+||++++|..+++.+...  |++|+.+.+++++.+.+.++++...   ..|..+.++....+.+..  .+.+|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999999999999988877666  4799999999988777764555421   224444323333333221  136999


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++++|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9998873

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.54  E-value=0.00037  Score=54.98  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=53.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..++..+...|++|+++++ ++++.+.+.++   .+...   ..|..+.+.+.+.+.+..  -++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999998 66655443322   34331   234444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       100 ~d~vi~~Ag  108 (274)
T 1ja9_A          100 LDFVMSNSG  108 (274)
T ss_dssp             EEEEECCCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.54  E-value=0.00038  Score=53.07  Aligned_cols=95  Identities=14%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++++++.+.+    ....++..+-. +..+.+.+... ++|+++.++|...
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~~~~~~~~D~~-d~~~~~~~~~~-~~d~vi~~ag~~~   75 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----NNVKAVHFDVD-WTPEEMAKQLH-GMDAIINVSGSGG   75 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----TTEEEEECCTT-SCHHHHHTTTT-TCSEEEECCCCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----CCceEEEeccc-CCHHHHHHHHc-CCCEEEECCcCCC
Confidence            589999999999999999999999999999987654321    11122222211 21234444333 5999999998521


Q ss_pred             ----------HHhHHHhhhcC--CEEEEEcccc
Q 024411          162 ----------LDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       162 ----------~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                                ....++.++..  +++|.++...
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence                      23444444443  5888887644

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.54  E-value=0.00049  Score=54.08  Aligned_cols=81  Identities=15%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+  |++|..+++.+...|++|++++++++   ..+.+.++.+....  .|..+.++....+.+..  .++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999998  99999999999989999999998875   33334323343222  34444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        87 iD~lv~~Ag~   96 (261)
T 2wyu_A           87 LDYLVHAIAF   96 (261)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.53  E-value=0.0001  Score=57.10  Aligned_cols=97  Identities=20%  Similarity=0.117  Sum_probs=63.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+|||+||+|++|..+++.+...| ++|+++++++++.+.+. ..+... ..|..+.+.+.+.+.     ++|+++.++
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~-----~~D~vv~~a   96 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNHAALKQAMQ-----GQDIVYANL   96 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCHHHHHHHHT-----TCSEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCHHHHHHHhc-----CCCEEEEcC
Confidence            3689999999999999999999999 79999999877544322 111111 224444312322222     589999988


Q ss_pred             Chhh----HHhHHHhhhcC--CEEEEEcccc
Q 024411          158 GGKL----LDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       158 g~~~----~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                      +...    .+..++.++..  +++|.++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            8632    34455555543  5888887643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.53  E-value=0.00057  Score=54.86  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------------HHHHHHHHH---hcCCCe---eeecCChhhHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------------KDKVDLLKN---KFGFDE---AFNYKEEADLNA  140 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~  140 (268)
                      .++++||+||++++|.++++.+...|++|++++++            .++.+.+.+   ..+...   ..|..+.++...
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            57899999999999999999999999999999876            444443321   334321   234444323333


Q ss_pred             HHHHHC--CCCccEEEeCCC
Q 024411          141 ALKRYF--PEGIDIYFENVG  158 (268)
Q Consensus       141 ~~~~~~--~~~~d~v~d~~g  158 (268)
                      .+.+..  .+.+|++++++|
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHhCCCCEEEECCC
Confidence            333221  136999999887

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.53  E-value=0.00043  Score=53.68  Aligned_cols=79  Identities=15%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC-------EEEEEeCCHHHHHHHHHhc---CCC-ee--eecCChhhHHHHHHHHC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC-------YVVGSAGSKDKVDLLKNKF---GFD-EA--FNYKEEADLNAALKRYF  146 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~-------~V~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~~  146 (268)
                      ++++||+||+|++|..+++.+...|+       +|+++++++++.+.+.+++   +.. ..  .|..+.+.+...+.+..
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            56899999999999999999988999       9999999988766554333   321 12  24444323333333221


Q ss_pred             --CCCccEEEeCCC
Q 024411          147 --PEGIDIYFENVG  158 (268)
Q Consensus       147 --~~~~d~v~d~~g  158 (268)
                        .+++|++++++|
T Consensus        82 ~~~g~id~li~~Ag   95 (244)
T 2bd0_A           82 ERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhCCCCCEEEEcCC
Confidence              236999999987

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.52  E-value=0.00074  Score=52.66  Aligned_cols=73  Identities=25%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..++++||+||+|++|..+++.+...|++|++++++++.   +. +++.... .|. .. +....+.+..  ++|+++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~-~~~~~~~~~D~-~~-~~~~~~~~~~--~iD~lv~~   88 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL---LK-RSGHRYVVCDL-RK-DLDLLFEKVK--EVDILVLN   88 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HH-HTCSEEEECCT-TT-CHHHHHHHSC--CCSEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HH-hhCCeEEEeeH-HH-HHHHHHHHhc--CCCEEEEC
Confidence            457899999999999999999999999999999998743   33 4442222 233 21 3433333332  69999999


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        89 Ag   90 (249)
T 1o5i_A           89 AG   90 (249)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.52  E-value=0.0002  Score=57.13  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHhc----CCC-e--eeecCC----hhhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKNKF----GFD-E--AFNYKE----EADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~~~----g~~-~--v~~~~~----~~~~~~~~~~~~  146 (268)
                      .++++||+||+|++|.++++.+...|++|+++++++ ++.+.+.+++    +.. .  ..|..+    .+.....+.+..
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999887 6554443232    322 1  234444    313333333221


Q ss_pred             --CCCccEEEeCCC
Q 024411          147 --PEGIDIYFENVG  158 (268)
Q Consensus       147 --~~~~d~v~d~~g  158 (268)
                        .+++|++++++|
T Consensus       102 ~~~g~iD~lvnnAG  115 (288)
T 2x9g_A          102 RAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              136999999987

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.51  E-value=0.00038  Score=54.82  Aligned_cols=74  Identities=16%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++    .  .... ...|..+.+++...+.+..  .+++|++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----E--AKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----S--CSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----C--CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999999999999999999999999999987543    0  0111 1234444323333333221  136999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        81 ~Ag   83 (264)
T 2dtx_A           81 NAG   83 (264)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.50  E-value=0.00025  Score=56.77  Aligned_cols=43  Identities=14%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLK  121 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~  121 (268)
                      .++++||+||++++|.++++.+...|++|++++ ++.++.+.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~   51 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   51 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence            467899999999999999999999999999999 9887765544

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.50  E-value=0.00032  Score=55.43  Aligned_cols=81  Identities=26%  Similarity=0.378  Sum_probs=53.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCC-ee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKN---KFGFD-EA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~---~~g~~-~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|++++++ ++..+.+.+   +.+.. .+  .|..+.++..+.+.+..  .++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999984 444333321   33432 22  24444323333333321  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       108 id~li~nAg~  117 (271)
T 4iin_A          108 LSYLVNNAGV  117 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.49  E-value=0.00059  Score=54.19  Aligned_cols=82  Identities=11%  Similarity=0.133  Sum_probs=55.7

Q ss_pred             CCCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCC
Q 024411           78 KHGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSK--DKVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        78 ~~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~--~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      -.++++||+||+  +|+|..+++.+...|++|++++++.  +..+.+.++.+....  .|..+.++....+.+..  .+.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            357899999988  6699999999999999999999877  555655534443222  34444323333333221  246


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       104 id~li~nAg~  113 (280)
T 3nrc_A          104 LDAIVHSIAF  113 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999873

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.49  E-value=0.00058  Score=53.28  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=51.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|..++..+...|++|++++++++.    . +.+.. ...|..+.+++.+.+.+..  .+++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----E-QYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS----S-CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh----h-cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999999999999999999999999999987542    2 33321 1234444323333333221  236999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9873

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.49  E-value=0.00027  Score=56.35  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=53.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-----------HHHHHHhcCCCe---eeecCChhhHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-----------VDLLKNKFGFDE---AFNYKEEADLNAALKR  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-----------~~~~~~~~g~~~---v~~~~~~~~~~~~~~~  144 (268)
                      .++++||+||++++|..+++.+...|++|++++++.++           .+.+. ..+...   ..|..+.++..+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE-EAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999987652           22233 334321   2244443233333332


Q ss_pred             HC--CCCccEEEeCCC
Q 024411          145 YF--PEGIDIYFENVG  158 (268)
Q Consensus       145 ~~--~~~~d~v~d~~g  158 (268)
                      ..  .+.+|++++++|
T Consensus        87 ~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           87 TVEQFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            21  136999999987

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.49  E-value=0.00034  Score=54.19  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      ++++||+||+|++|..+++.+...|++|+++++++++  ... +++... ..|..+. +....+.+..  -+++|+++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~--~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE--AAQ-SLGAVPLPTDLEKD-DPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH-HHTCEEEECCTTTS-CHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHH-hhCcEEEecCCchH-HHHHHHHHHHHHcCCCCEEEEC
Confidence            4689999999999999999999999999999988766  223 455321 1233322 3333333221  1369999999


Q ss_pred             CC
Q 024411          157 VG  158 (268)
Q Consensus       157 ~g  158 (268)
                      +|
T Consensus        78 Ag   79 (239)
T 2ekp_A           78 AA   79 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.00054  Score=55.73  Aligned_cols=79  Identities=19%  Similarity=0.332  Sum_probs=52.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-----KDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--  146 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-----~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--  146 (268)
                      ++++||+||+|++|..+++.+...|++|+++.++     .++.+.+.+   ..+.. .  ..|..+.++..+.+.+..  
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~   84 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGE   84 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999998765     333333321   23332 1  234444323333333321  


Q ss_pred             CCCccEEEeCCC
Q 024411          147 PEGIDIYFENVG  158 (268)
Q Consensus       147 ~~~~d~v~d~~g  158 (268)
                      .+++|++++++|
T Consensus        85 ~g~iD~lVnnAG   96 (324)
T 3u9l_A           85 DGRIDVLIHNAG   96 (324)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            136999999998

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.48  E-value=0.0001  Score=58.26  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=49.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH---HHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN---AALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~~~~~~~~d~v~d  155 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.+... ..    ..|..+.+...   +.+.+.. +++|++++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~----~~Dv~~~~~~~~~~~~~~~~~-g~iD~lvn  100 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL-HL----PGDLREAAYADGLPGAVAAGL-GRLDIVVN  100 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSE-EC----CCCTTSHHHHHHHHHHHHHHH-SCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhh-cc----CcCCCCHHHHHHHHHHHHHhc-CCCCEEEE
Confidence            5789999999999999999999999999999998754322111 11    12333321222   2222221 36999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus       101 nAg~  104 (266)
T 3uxy_A          101 NAGV  104 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9873

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.47  E-value=0.0006  Score=54.28  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCee--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDEA--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+  |++|..+++.+...|++|++++++++   ..+.+.++.+....  .|..+.++....+.+..  .++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999998  89999999999999999999998864   33333323342222  34444323333333221  246


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       100 iD~lv~~Ag  108 (285)
T 2p91_A          100 LDIIVHSIA  108 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.47  E-value=0.00037  Score=55.41  Aligned_cols=82  Identities=12%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      ..++++||+||++++|.++++.+...|++|+++++ ++++.+.+.++   .+...   ..|..+.++..+.+.+..  .+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999985 65554443322   23321   224444323333333221  13


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|++++++|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            69999998874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.46  E-value=0.00029  Score=57.43  Aligned_cols=43  Identities=14%  Similarity=0.123  Sum_probs=38.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLK  121 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~  121 (268)
                      .++++||+||+|++|.++++.+...|++|++++ +++++.+.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~   88 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   88 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            468999999999999999999999999999999 9887766554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.46  E-value=0.00042  Score=54.63  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             CCCCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHhcCCCe--eeecCChhhHHHHHHHHC--C
Q 024411           77 PKHGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKDKVD---LLKNKFGFDE--AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        77 ~~~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~~~~---~~~~~~g~~~--v~~~~~~~~~~~~~~~~~--~  147 (268)
                      ..+++++||+||+  +++|..+++.+...|++|+++++++...+   .+.++.+...  ..|..+.++....+.+..  .
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4568899999998  99999999999999999999988754333   3322334322  234444323333333221  2


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus        91 g~id~lv~nAg  101 (271)
T 3ek2_A           91 DSLDGLVHSIG  101 (271)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            37999999987

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.46  E-value=0.00052  Score=60.78  Aligned_cols=105  Identities=23%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---------CHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---------SKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---------~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      .++++||+||++++|.+++..+...|++|+++++         +.++.+.+.+   ..+...+.|..+.++..+.+.+..
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999876         3333333221   334444455554323333333332


Q ss_pred             C--CCccEEEeCCChh--------------------------hHHhHHHhhhc--CCEEEEEccccc
Q 024411          147 P--EGIDIYFENVGGK--------------------------LLDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       147 ~--~~~d~v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      .  +.+|++++++|..                          ..+.++..|+.  .|++|.+++..+
T Consensus        98 ~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~  164 (613)
T 3oml_A           98 KAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSG  164 (613)
T ss_dssp             -------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHH
T ss_pred             HHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHH
Confidence            2  3699999998831                          02334455544  489999877544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.46  E-value=0.00022  Score=56.82  Aligned_cols=95  Identities=14%  Similarity=0.077  Sum_probs=63.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|||+||+|.+|..+++.+... |.+|+++.+++++...+. ..+... ..|..+.    +.+.+... ++|+++.+++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~-~~~v~~~~~D~~d~----~~l~~~~~-~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW-RGKVSVRQLDYFNQ----ESMVEAFK-GMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG-BTTBEEEECCTTCH----HHHHHHTT-TCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh-hCCCEEEEcCCCCH----HHHHHHHh-CCCEEEEeCCC
Confidence            4899999999999999998887 899999999887654433 233321 2344443    23333332 59999999874


Q ss_pred             --------hhHHhHHHhhhcC--CEEEEEcccc
Q 024411          160 --------KLLDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       160 --------~~~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                              ......++.++..  +++|.++...
T Consensus        76 ~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           76 IHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                    1233455555554  4788887643

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.45  E-value=0.00047  Score=55.96  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe---------CCHHHHHHHHH---hcCCCeeeecCChhhHHHH---HH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA---------GSKDKVDLLKN---KFGFDEAFNYKEEADLNAA---LK  143 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~---------~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~---~~  143 (268)
                      .++++||+||+|++|..+++.+...|++|++.+         ++.++.+.+.+   ..+...+.|..+.++....   +.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999964         34454433321   2233334455543233333   33


Q ss_pred             HHCCCCccEEEeCCC
Q 024411          144 RYFPEGIDIYFENVG  158 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g  158 (268)
                      +.. +.+|++++++|
T Consensus        88 ~~~-g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTF-GRIDVVVNNAG  101 (319)
T ss_dssp             HHT-SCCCEEEECCC
T ss_pred             HHc-CCCCEEEECCC
Confidence            322 36999999987

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.45  E-value=0.00069  Score=53.63  Aligned_cols=80  Identities=26%  Similarity=0.310  Sum_probs=53.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH-------HH----HHHHhcCCCe---eeecCChhhHHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK-------VD----LLKNKFGFDE---AFNYKEEADLNAALKR  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~-------~~----~~~~~~g~~~---v~~~~~~~~~~~~~~~  144 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++       .+    .+. ..+...   ..|..+.++..+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVN-AAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHH-HHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHH-hcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999987542       22    222 234321   2344443233333332


Q ss_pred             HC--CCCccEEEeCCCh
Q 024411          145 YF--PEGIDIYFENVGG  159 (268)
Q Consensus       145 ~~--~~~~d~v~d~~g~  159 (268)
                      ..  .+.+|++++++|.
T Consensus        84 ~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           84 TVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence            21  1369999999883

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.45  E-value=0.00051  Score=54.39  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHH---HHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLN---AALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~---~~~~~~~~~~  149 (268)
                      .++++||+||++++|.++++.+...|++|+++++++...+.+. ++   +.. .  ..|..+.++..   +.+.+.  ++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVAD-EIADGGGSAEAVVADLADLEGAANVAEELAAT--RR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHH-HHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-HHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc--CC
Confidence            5789999999999999999999999999999997654333333 32   221 1  23444431222   222222  47


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       107 iD~lv~nAg~  116 (273)
T 3uf0_A          107 VDVLVNNAGI  116 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999873

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.44  E-value=0.00041  Score=52.11  Aligned_cols=95  Identities=17%  Similarity=0.145  Sum_probs=60.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++++..... ..+. .++  |..+.+.+.+.+     .++|+++.+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~-~~~~-~~~~~D~~~~~~~~~~~-----~~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPA-HVVVGDVLQAADVDKTV-----AGQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCS-EEEESCTTSHHHHHHHH-----TTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccccc-CCce-EEEEecCCCHHHHHHHH-----cCCCEEEECcc
Confidence            58999999999999999999999999999999876543211 1111 222  333321222222     24899999988


Q ss_pred             h-h----------hHHhHHHhhhc--CCEEEEEcccc
Q 024411          159 G-K----------LLDAVLPNMKI--RGRIAACGMIS  182 (268)
Q Consensus       159 ~-~----------~~~~~~~~l~~--~G~~v~~g~~~  182 (268)
                      . .          .....++.+..  -++++.++...
T Consensus        77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~  113 (206)
T 1hdo_A           77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (206)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeee
Confidence            5 2          12344444443  25888887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.43  E-value=0.0016  Score=45.90  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ..+++|+|+ |.+|..+++.+...|.+|+++++++++.+.++ +.+.. ++..+.  .-.+.+++..-.++|+++.+++.
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-~~~~~-~~~gd~--~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-DEGFD-AVIADP--TDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCE-EEECCT--TCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HCCCc-EEECCC--CCHHHHHhCCcccCCEEEEecCC
Confidence            357999998 99999999999999999999999999988887 66653 332222  11223443322379999999996

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.43  E-value=0.00077  Score=54.60  Aligned_cols=81  Identities=21%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------------HHHHHHHHH---hcCCCe---eeecCChhhHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------------KDKVDLLKN---KFGFDE---AFNYKEEADLN  139 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~  139 (268)
                      -.++++||+||++++|..+++.+...|++|++++++            .++.+...+   ..+...   ..|..+.++..
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            357899999999999999999999999999999765            444433321   334322   23444432333


Q ss_pred             HHHHHHC--CCCccEEEeCCC
Q 024411          140 AALKRYF--PEGIDIYFENVG  158 (268)
Q Consensus       140 ~~~~~~~--~~~~d~v~d~~g  158 (268)
                      ..+.+..  .+.+|++++++|
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            3333221  136999999987

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.43  E-value=0.00047  Score=53.66  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++ +.++.+.+.+   ..+...   ..|..+.++....+.+..  .++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999998876 4454444332   233321   224444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 3osu_A           83 LDVLVNNAGI   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.42  E-value=0.00049  Score=53.41  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++ .+++++.+.+.+   ..+.. .  ..|..+.+.+...+.+..  .++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999998 555444433321   22432 1  224444323333333221  136


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.42  E-value=0.0035  Score=51.26  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHhc------CCCeee--ecCChhhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK----DKVDLLKNKF------GFDEAF--NYKEEADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~----~~~~~~~~~~------g~~~v~--~~~~~~~~~~~~~~~~  146 (268)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++.    ...+.+. ..      ....++  |..+.    +.+.+..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~   98 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK-TLVSTEQWSRFCFIEGDIRDL----TTCEQVM   98 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH-HTSCHHHHTTEEEEECCTTCH----HHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhh-hccccccCCceEEEEccCCCH----HHHHHHh
Confidence            357899999999999999999999999999999854    3334333 21      111222  33332    2333333


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                      . ++|+|+.+++.
T Consensus        99 ~-~~d~Vih~A~~  110 (351)
T 3ruf_A           99 K-GVDHVLHQAAL  110 (351)
T ss_dssp             T-TCSEEEECCCC
T ss_pred             c-CCCEEEECCcc
Confidence            3 69999999973

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.42  E-value=0.00086  Score=47.19  Aligned_cols=75  Identities=12%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++++|+|+ |.+|..+++.+...|.+|+++++++++.+.++ +.+.. ++..+.. + .+.+.+...+++|+++.+++.
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-~~~~~-~~~~d~~-~-~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATH-AVIANAT-E-ENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-TTCSE-EEECCTT-C-HHHHHTTTGGGCSEEEECCCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCE-EEEeCCC-C-HHHHHhcCCCCCCEEEECCCC
Confidence            456999998 99999999999999999999999888777665 44442 3322221 2 223333212369999999986

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.00022  Score=54.65  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      .+|||+||+|.+|..+++.+...|.+|+++++++++.+.+.  .+... ..|..+.+.+.+.+    . ++|+|+.++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~----~-~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVC----K-GADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHH----T-TCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHh----c-CCCEEEEeCcC
Confidence            57999999999999999999999999999999876543211  11111 12333321233222    2 59999999875


Q ss_pred             h------------hHHhHHHhhhcC--CEEEEEccc
Q 024411          160 K------------LLDAVLPNMKIR--GRIAACGMI  181 (268)
Q Consensus       160 ~------------~~~~~~~~l~~~--G~~v~~g~~  181 (268)
                      .            .....++.++..  +++|.++..
T Consensus        78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence            2            123444555543  478888764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.42  E-value=0.00069  Score=51.14  Aligned_cols=99  Identities=19%  Similarity=0.304  Sum_probs=69.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~  146 (268)
                      ....+.++++||-.|+ |. |..++.+++. +.+|++++.+++..+.+++.   .+.. .  ++..+.. +   .+..  
T Consensus        49 ~~l~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-~---~~~~--  119 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-GS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP-A---ALAD--  119 (204)
T ss_dssp             HHHCCCTTCEEEEETC-TT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT-G---GGTT--
T ss_pred             HhcCCCCCCEEEEecC-CC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh-h---hccc--
Confidence            3446788999999996 43 8888888888 88999999999988877633   3443 2  2322222 1   1111  


Q ss_pred             CCCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.+|+|+...+.  ..+..+.+.|+|+|+++....
T Consensus       120 ~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          120 LPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             SCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            1269999866543  367889999999999887644

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.41  E-value=0.0019  Score=52.02  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC---HHHHHHHHHhc----CCC-eeeecCChhhHHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS---KDKVDLLKNKF----GFD-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~---~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+++++|+|+ |++|.+++..+...|+ +|+++.|+   .++.+.+.+++    +.. .++++.+.+++.+.+.     .
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~  226 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIA-----E  226 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-----T
T ss_pred             cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhc-----C
Confidence            5789999998 9999999999999999 99999999   77665544333    221 2444443213333333     4


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++|++
T Consensus       227 aDiIINaTp  235 (315)
T 3tnl_A          227 SVIFTNATG  235 (315)
T ss_dssp             CSEEEECSS
T ss_pred             CCEEEECcc
Confidence            899999986

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.40  E-value=0.00022  Score=56.43  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEE
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      ...++++||+||++++|.++++.+...|++|++++++++...    . ... ...|..+.++..+.+.+..  .+.+|++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   85 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDIL   85 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            456899999999999999999999999999999998765331    1 111 1234444323333333221  1369999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        86 v~nAg~   91 (269)
T 3vtz_A           86 VNNAGI   91 (269)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.40  E-value=0.00047  Score=54.11  Aligned_cols=81  Identities=11%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHhcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD----LLKNKFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~----~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..++..+...|++|++++++.++..    .+.++.+...   ..|..+.+.+...+.+..  .+.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999998544322    2221224321   234444323333333321  236


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.39  E-value=0.00072  Score=55.13  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=51.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHhcCCC-ee--eecCChhhHHHHHHHHCCCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV----DLLKNKFGFD-EA--FNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~----~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+.+|||+||+|.+|..+++.+...|++|++++++.++.    +.+.+..+.. ..  .|..+.+.+.+.+.+   +++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA---HPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH---SCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc---cCCc
Confidence            456899999999999999999999999999998765432    2222112322 22  244443233333332   3699


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +++++++.
T Consensus        81 ~vih~A~~   88 (341)
T 3enk_A           81 AAIHFAAL   88 (341)
T ss_dssp             EEEECCCC
T ss_pred             EEEECccc
Confidence            99999873

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.39  E-value=0.00074  Score=52.53  Aligned_cols=95  Identities=18%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  159 (268)
                      +++||+||+|++|..++..+...|++|+++++++++.+       .....|..+.+.+...+.+. .+++|+++.++|. 
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~~D~~~~~~~~~~~~~~-~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------ADLSTPGGRETAVAAVLDRC-GGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------CCTTSHHHHHHHHHHHHHHH-TTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc-------ccccCCcccHHHHHHHHHHc-CCCccEEEECCCCC
Confidence            36999999999999999999889999999998754321       01111222111233333333 2479999999874 


Q ss_pred             h------------------hHHhHHHhhhc--CCEEEEEccccc
Q 024411          160 K------------------LLDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       160 ~------------------~~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      .                  .++.+.+.+..  .++++.+++...
T Consensus        74 ~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  117 (255)
T 2dkn_A           74 VTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA  117 (255)
T ss_dssp             TTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             CcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccc
Confidence            2                  01233334433  389999877543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.39  E-value=0.00049  Score=53.38  Aligned_cols=79  Identities=15%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc-CCC-e--eeecCChhhHHHHHH---HHCCC-C
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKF-GFD-E--AFNYKEEADLNAALK---RYFPE-G  149 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~-g~~-~--v~~~~~~~~~~~~~~---~~~~~-~  149 (268)
                      ++++||+||+|++|..+++.+...|  ++|++++++.++.+.+. +. +.. .  ..|..+.+.+...+.   +..+. +
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH-TCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH-hccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999999  99999999988777666 44 222 1  234444313332222   22221 6


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|+++.++|.
T Consensus        82 id~li~~Ag~   91 (250)
T 1yo6_A           82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999998873

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.39  E-value=0.0012  Score=54.18  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHhcCCC--ee--eecCChhhHHHHHHHHCCCCcc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GC-YVVGSAGSKDKVDLLKNKFGFD--EA--FNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~-~V~~~~~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      -.+.+|||+||+|.+|..+++.+... |. +|+++++++.+.+.+.+.+...  ..  .|..+.    +.+.+... ++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~l~~~~~-~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDL----ERLNYALE-GVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCH----HHHHHHTT-TCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCH----HHHHHHHh-cCC
Confidence            35689999999999999999988888 98 9999999988776665344322  12  233332    23333332 599


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      +|+.+++.
T Consensus        94 ~Vih~Aa~  101 (344)
T 2gn4_A           94 ICIHAAAL  101 (344)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.37  E-value=0.00082  Score=53.09  Aligned_cols=82  Identities=20%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHCC--
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYFP--  147 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~~--  147 (268)
                      ...++++||+||+|++|.++++.+...|++|+++ .++.++.+.+.++   .+.. .  ..|..+.++....+.+...  
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4567899999999999999999999999999887 6666655544322   2332 1  1244443233333332211  


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      +++|++++++|
T Consensus       103 g~id~li~nAg  113 (272)
T 4e3z_A          103 GRLDGLVNNAG  113 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.36  E-value=0.00079  Score=54.64  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC----------HHHHHHHHH---hcCCCe---eeecCChhhHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS----------KDKVDLLKN---KFGFDE---AFNYKEEADLNAA  141 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~----------~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~  141 (268)
                      -.++++||+||++++|.+++..+...|++|++++++          .++.+.+.+   ..+...   ..|..+.++....
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            357899999999999999999999999999999876          333333221   333321   1234433233333


Q ss_pred             HHHHC--CCCccEEEeCCCh
Q 024411          142 LKRYF--PEGIDIYFENVGG  159 (268)
Q Consensus       142 ~~~~~--~~~~d~v~d~~g~  159 (268)
                      +.+..  .+.+|++++++|.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence            33221  1369999999883

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.35  E-value=0.00089  Score=51.93  Aligned_cols=73  Identities=22%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+.+|||+||+|.+|..+++.+...  |++|+++++++++.+.+.  .+... ..|..+.+.+.+.+    . ++|+++.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~----~-~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDITDADSINPAF----Q-GIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT--CCTTEEECCTTSHHHHHHHH----T-TCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC--CCeeEEEecCCCHHHHHHHH----c-CCCEEEE
Confidence            4578999999999999999999888  889999999877654321  12221 23444331232222    2 4899999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        76 ~a~   78 (253)
T 1xq6_A           76 LTS   78 (253)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            887

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.35  E-value=0.0013  Score=51.25  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=71.5

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ....+.++++||-.|+ |. |..+..+++..  +.+|++++.+++..+.+++.   .+....+..... ++.    +...
T Consensus        87 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~~~  159 (255)
T 3mb5_A           87 AYAGISPGDFIVEAGV-GS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-DIY----EGIE  159 (255)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-CGG----GCCC
T ss_pred             HhhCCCCCCEEEEecC-Cc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-chh----hccC
Confidence            4567889999999996 43 88899999885  56999999999988877633   254331122111 221    1123


Q ss_pred             C-CccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 E-GIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~-~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . .+|+|+-....  ..+..+.+.|+|+|+++....
T Consensus       160 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          160 EENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            3 79999876665  478999999999999988743

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.34  E-value=0.0037  Score=49.64  Aligned_cols=94  Identities=10%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC----CeeeecCChhhHHHHHHHHCCCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF----DEAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      -.+++++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+.++++.    ..+.....+ ++.+.+.+     +|+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~-~l~~~l~~-----~Di  197 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDAR-GIEDVIAA-----ADG  197 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECST-THHHHHHH-----SSE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHH-HHHHHHhc-----CCE
Confidence            45789999998 9999999999999999 799999999887765434431    112122212 44444443     899


Q ss_pred             EEeCCChhh-----HHhHHHhhhcCCEEEEE
Q 024411          153 YFENVGGKL-----LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       153 v~d~~g~~~-----~~~~~~~l~~~G~~v~~  178 (268)
                      +++|++...     .......++++..++.+
T Consensus       198 VInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dl  228 (283)
T 3jyo_A          198 VVNATPMGMPAHPGTAFDVSCLTKDHWVGDV  228 (283)
T ss_dssp             EEECSSTTSTTSCSCSSCGGGCCTTCEEEEC
T ss_pred             EEECCCCCCCCCCCCCCCHHHhCCCCEEEEe
Confidence            999986311     11123445565555544

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.34  E-value=0.001  Score=58.70  Aligned_cols=104  Identities=20%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH---------HHHHHHHH---hcCCCeeeecCChh---hHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK---------DKVDLLKN---KFGFDEAFNYKEEA---DLNAALK  143 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~---------~~~~~~~~---~~g~~~v~~~~~~~---~~~~~~~  143 (268)
                      .++.++|+||++|+|.+.+..+...|++|++.+++.         ++.+.+.+   ..|...+.|..+.+   .+.+.+.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            468899999999999999999999999999987643         33332221   33433344444321   2333333


Q ss_pred             HHCCCCccEEEeCCCh-h-------------------------hHHhHHHhhhc--CCEEEEEccccc
Q 024411          144 RYFPEGIDIYFENVGG-K-------------------------LLDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~-~-------------------------~~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      +.. |.+|++++++|- .                         ..+.+++.++.  +|++|.+++..+
T Consensus        87 ~~~-G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag  153 (604)
T 2et6_A           87 KNF-GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAG  153 (604)
T ss_dssp             HHH-SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             HHc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHH
Confidence            322 469999999883 1                         02345555643  589999987554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.34  E-value=0.00092  Score=52.19  Aligned_cols=105  Identities=19%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCH--HHHHHHHHhcC-CC-ee--eecCCh-hhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSK--DKVDLLKNKFG-FD-EA--FNYKEE-ADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~--~~~~~~~~~~g-~~-~v--~~~~~~-~~~~~~~~~~~~--~  148 (268)
                      .+++++|+||+|++|..+++.+...|++ |+++++++  +..+.+.+..+ .. ..  .|..+. ++....+.+...  +
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999996 99888875  34444442222 11 11  233332 133333332211  3


Q ss_pred             CccEEEeCCCh---hh---------------HHhHHHhhhc-----CCEEEEEccccc
Q 024411          149 GIDIYFENVGG---KL---------------LDAVLPNMKI-----RGRIAACGMISQ  183 (268)
Q Consensus       149 ~~d~v~d~~g~---~~---------------~~~~~~~l~~-----~G~~v~~g~~~~  183 (268)
                      ++|++++++|.   +.               .+.+++.+..     +|+++.+++...
T Consensus        84 ~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~  141 (254)
T 1sby_A           84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTG  141 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhh
Confidence            69999999883   11               2233334432     478999887654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.34  E-value=0.00046  Score=51.97  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=87.3

Q ss_pred             CCCCCCeEEeccccceeEe-ecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHH
Q 024411           19 EFNKGDLVWGMTGWEEYSL-ITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVG   97 (268)
Q Consensus        19 ~~~~Gd~V~~~g~~~~~~~-v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i   97 (268)
                      .++.|+.++....|.+|.. .+....+.+ +.+  +.+..+..+ ........+..  .+.++.+||-.|+ |. |..+.
T Consensus         5 ~~~~~~~~~~~p~w~~~~~~~~~~~~~~~-~~~--~~f~~~~~~-~~~~~~~~l~~--~~~~~~~vLDiG~-G~-G~~~~   76 (205)
T 3grz_A            5 VINLSRHLAIVPEWEDYQPVFKDQEIIRL-DPG--LAFGTGNHQ-TTQLAMLGIER--AMVKPLTVADVGT-GS-GILAI   76 (205)
T ss_dssp             CEEEETTEEEEETTCCCCCSSTTCEEEEE-SCC-------CCHH-HHHHHHHHHHH--HCSSCCEEEEETC-TT-SHHHH
T ss_pred             cEEECCcEEEeccccccccCCCCceeEEe-cCC--cccCCCCCc-cHHHHHHHHHH--hccCCCEEEEECC-CC-CHHHH
Confidence            3556777777778888877 677777788 444  322111111 11112222222  2568899999996 43 77777


Q ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCC--eeeecCChhhHHHHHHHHCCCCccEEEeCCCh----hhHHhHHH
Q 024411           98 QFAKLLGC-YVVGSAGSKDKVDLLKNK---FGFD--EAFNYKEEADLNAALKRYFPEGIDIYFENVGG----KLLDAVLP  167 (268)
Q Consensus        98 ~l~~~~g~-~V~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~----~~~~~~~~  167 (268)
                      .+++. +. +|++++.++...+.+++.   .+..  ..+..+.. +       ...+.+|+|+.....    ..+..+.+
T Consensus        77 ~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~  147 (205)
T 3grz_A           77 AAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLL-A-------DVDGKFDLIVANILAEILLDLIPQLDS  147 (205)
T ss_dssp             HHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTT-T-------TCCSCEEEEEEESCHHHHHHHGGGSGG
T ss_pred             HHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccc-c-------cCCCCceEEEECCcHHHHHHHHHHHHH
Confidence            77764 55 999999999888777632   2432  22222211 1       123479999865543    24677888


Q ss_pred             hhhcCCEEEEEcc
Q 024411          168 NMKIRGRIAACGM  180 (268)
Q Consensus       168 ~l~~~G~~v~~g~  180 (268)
                      .|+++|+++....
T Consensus       148 ~L~~gG~l~~~~~  160 (205)
T 3grz_A          148 HLNEDGQVIFSGI  160 (205)
T ss_dssp             GEEEEEEEEEEEE
T ss_pred             hcCCCCEEEEEec
Confidence            8999999887644

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.33  E-value=0.00079  Score=52.96  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             CCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--
Q 024411           79 HGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKD-----KVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--  146 (268)
Q Consensus        79 ~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~-----~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--  146 (268)
                      .++++||+||+  +++|..+++.+...|++|++++++..     ..+.+.+..+...   ..|..+.++....+.+..  
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVAD   98 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            46899999999  89999999999999999999987643     2233332334321   234444323333333221  


Q ss_pred             CCCccEEEeCCC
Q 024411          147 PEGIDIYFENVG  158 (268)
Q Consensus       147 ~~~~d~v~d~~g  158 (268)
                      .+.+|++++++|
T Consensus        99 ~g~id~li~nAg  110 (267)
T 3gdg_A           99 FGQIDAFIANAG  110 (267)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            236999999987

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.32  E-value=0.0011  Score=52.15  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=68.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .++.+||..|+ |. |..+..+++.. +.+|++++.++...+.++ +.... ..+..+.. .+.     ...+.+|+|+.
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~d~~-~~~-----~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLDVSKVAIKAAA-KRYPQVTFCVASSH-RLP-----FSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEESCHHHHHHHH-HHCTTSEEEECCTT-SCS-----BCTTCEEEEEE
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HhCCCcEEEEcchh-hCC-----CCCCceeEEEE
Confidence            67889999997 65 88899999886 779999999999999988 54432 22222211 110     11237999996


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ......+..+.+.|+|+|+++....
T Consensus       155 ~~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          155 IYAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             ESCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhHHHHHHhcCCCcEEEEEEc
Confidence            5445778999999999999887754

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.30  E-value=0.00056  Score=53.38  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEE-eCCHHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGS-AGSKDKVDL  119 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~-~~~~~~~~~  119 (268)
                      -.++++||+||++++|..+++.+...|++|+++ .++.++.+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~   47 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEE   47 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Confidence            357899999999999999999999999999886 444444433

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.29  E-value=0.00096  Score=52.61  Aligned_cols=81  Identities=17%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHH---hcCCC-e--eeecCChhhHHHHHHHHCC--C
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKN---KFGFD-E--AFNYKEEADLNAALKRYFP--E  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~~~--~  148 (268)
                      ..++++||+||++++|..+++.+...|++|++++ ++.+..+...+   ..+.. .  ..|..+.++....+.+...  +
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3568899999999999999999999999999998 55554433221   22322 1  2344443233333332211  3


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++++|
T Consensus       103 ~id~li~nAg  112 (269)
T 3gk3_A          103 KVDVLINNAG  112 (269)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.28  E-value=0.0012  Score=49.60  Aligned_cols=63  Identities=14%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++||+||+|++|..+++.+. .|++|++++++++           ....|..+.+.+.+.+.+.  +++|+++.++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            69999999999999999888 8999999997643           1223444432344444443  46899999887

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.27  E-value=0.0046  Score=51.09  Aligned_cols=91  Identities=14%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|+|+|| |.+|..+++.+.. ..+|.+.+++.++.+.++ +......+|..+.+.+.+.++     ++|+|++|++. .
T Consensus        18 kilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~l~~~~~-----~~DvVi~~~p~~~   89 (365)
T 3abi_A           18 KVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-EFATPLKVDASNFDKLVEVMK-----EFELVIGALPGFL   89 (365)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-TTSEEEECCTTCHHHHHHHHT-----TCSEEEECCCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-ccCCcEEEecCCHHHHHHHHh-----CCCEEEEecCCcc
Confidence            6999998 9999998888754 468999999998888776 432222345444323333332     48999999997 4


Q ss_pred             hHHhHHHhhhcCCEEEEEcc
Q 024411          161 LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ....+..++..+-+++.+..
T Consensus        90 ~~~v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           90 GFKSIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             HHHHHHHHHHHTCEEEECCC
T ss_pred             cchHHHHHHhcCcceEeeec
Confidence            55666677777888888754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.27  E-value=0.00041  Score=54.36  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHC-CCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYF-PEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~-~~~~d~v~  154 (268)
                      .++++||+||++++|.++++.+...|++|++++++.++.  .. +++...   ..|..+.++....+.... .+.+|+++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV--VA-DLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH--HH-HTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH--HH-hcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            467899999999999999999999999999999855432  22 444432   234444322222222111 24799999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      +++|
T Consensus        85 ~nAg   88 (257)
T 3tl3_A           85 NCAG   88 (257)
T ss_dssp             ECGG
T ss_pred             ECCC
Confidence            9998

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.26  E-value=0.00059  Score=52.55  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHC-CCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYF-PEG  149 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~-~~~  149 (268)
                      ....++.+||-+|+ | .|..+..+++.. +.+|++++.++...+.+++.+   +....+..... +....+.... .+.
T Consensus        50 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  126 (233)
T 2gpy_A           50 LKMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG-DALQLGEKLELYPL  126 (233)
T ss_dssp             HHHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CGGGSHHHHTTSCC
T ss_pred             HhccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-CHHHHHHhcccCCC
Confidence            34567889999996 4 688888999887 579999999999888876332   44211111111 2222222222 247


Q ss_pred             ccEEEeCCCh----hhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYFENVGG----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      ||+|+.....    ..+..+.+.|+|+|+++..
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9998865442    4567888999999998875

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.26  E-value=0.00046  Score=54.30  Aligned_cols=81  Identities=12%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHH--hcCCC-ee--eecCChhhHHHHH---HHHC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG---CYVVGSAGSKDKVDLLKN--KFGFD-EA--FNYKEEADLNAAL---KRYF  146 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g---~~V~~~~~~~~~~~~~~~--~~g~~-~v--~~~~~~~~~~~~~---~~~~  146 (268)
                      -++.++||+||+|++|..+++.+...|   ++|++++++.++.+.+.+  +.+.. ..  .|..+.+.+...+   .+..
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            346789999999999999999999999   999999988764433321  11222 12  2434332333333   3322


Q ss_pred             CC-CccEEEeCCC
Q 024411          147 PE-GIDIYFENVG  158 (268)
Q Consensus       147 ~~-~~d~v~d~~g  158 (268)
                      +. ++|++++++|
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence            32 5999999987

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.25  E-value=0.0014  Score=53.01  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=69.0

Q ss_pred             hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCC
Q 024411           72 YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        72 ~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      .....+.++.+||-+|+ |. |..+..+++..|++|++++.+++..+.+++..   +....+..... ++    .+. ++
T Consensus        83 ~~~~~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~~-~~  154 (318)
T 2fk8_A           83 LDKLDLKPGMTLLDIGC-GW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GW----EDF-AE  154 (318)
T ss_dssp             HTTSCCCTTCEEEEESC-TT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CG----GGC-CC
T ss_pred             HHhcCCCCcCEEEEEcc-cc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-Ch----HHC-CC
Confidence            34456788999999996 44 88888999888999999999999888877332   33211111111 11    111 25


Q ss_pred             CccEEEeC-----CCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFEN-----VGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~-----~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+|+|+..     .+.    ..+..+.+.|+|+|+++....
T Consensus       155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            79999865     331    456788899999999887654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.00014  Score=57.20  Aligned_cols=76  Identities=17%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|.+++..+...|++|++++++.++...    .... ...|..+.++..+.+.+..  .+++|++++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD----PDIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS----TTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----CceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            46899999999999999999999999999999987543221    1111 1224444323333333221  136999999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus       103 nAg  105 (260)
T 3un1_A          103 NAG  105 (260)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.24  E-value=0.00088  Score=52.20  Aligned_cols=103  Identities=12%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCC-
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPE-  148 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~-  148 (268)
                      ....++.+||-+|+  +.|..+..+++.+  +.+|++++.+++..+.+++.+   |...-+..... +..+.+...... 
T Consensus        59 ~~~~~~~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~l~~~~~~~  135 (248)
T 3tfw_A           59 VRLTQAKRILEIGT--LGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG-PALQSLESLGECP  135 (248)
T ss_dssp             HHHHTCSEEEEECC--TTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHTCCSCC
T ss_pred             HhhcCCCEEEEecC--CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHhcCCCC
Confidence            34567889999996  3588888999887  569999999999888776332   54321222222 333334433322 


Q ss_pred             CccEEEeCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .||+|+-....    ..+..+.+.|+|+|.++....
T Consensus       136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          136 AFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            79999833322    457888999999998877543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.23  E-value=0.0011  Score=52.04  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++. ..+.+.+.+   +.. .  ..|..+.++..+.+.+...  ++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            3578999999999999999999999999999966543 344443222   211 1  2344443233333333211  36


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999998

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.23  E-value=0.00073  Score=53.64  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|.+|..+++.+...  |.+|+++++++++.+.+. ..+... ..|..+.    +.+.+... ++|+|+.+++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~-~~~~~~~~~D~~d~----~~l~~~~~-~~d~vi~~a~   75 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA-DQGVEVRHGDYNQP----ESLQKAFA-GVSKLLFISG   75 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH-HTTCEEEECCTTCH----HHHHHHTT-TCSEEEECCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh-hcCCeEEEeccCCH----HHHHHHHh-cCCEEEEcCC
Confidence            5899999999999999988887  899999999877665554 334322 2244432    23333332 5899999987


Q ss_pred             h--------hhHHhHHHhhhcC--CEEEEEcccc
Q 024411          159 G--------KLLDAVLPNMKIR--GRIAACGMIS  182 (268)
Q Consensus       159 ~--------~~~~~~~~~l~~~--G~~v~~g~~~  182 (268)
                      .        ......++.+...  ++++.++...
T Consensus        76 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           76 PHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            3        1223444444443  4788877643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.21  E-value=0.0054  Score=46.83  Aligned_cols=101  Identities=13%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCC-eeeecCChhhHHHHHHHHCCCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFD-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      +.+++.+||=+|+  +.|..++.+++.+  +.+|+.++.+++..+.+++.   .|.. .-+..... +..+.+.....+.
T Consensus        53 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g-da~~~l~~~~~~~  129 (221)
T 3dr5_A           53 NGNGSTGAIAITP--AAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS-RPLDVMSRLANDS  129 (221)
T ss_dssp             CCTTCCEEEEEST--THHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-CHHHHGGGSCTTC
T ss_pred             CCCCCCCEEEEcC--CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc-CHHHHHHHhcCCC
Confidence            3445569998884  5688899999986  57999999999988777643   3443 22222222 3333333322347


Q ss_pred             ccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          150 IDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       150 ~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ||+|+-....    ..+..+.+.|+|+|.++.-.
T Consensus       130 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          130 YQLVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             EEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             cCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            9998754332    35788899999999988743

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.18  E-value=0.00033  Score=54.42  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKD-KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .++++||+||++++|..+++.+.. .|++|++..++++ ..+    .. .....|..+.++....+.....+++|+++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~----~~-~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAE----NL-KFIKADLTKQQDITNVLDIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCT----TE-EEEECCTTCHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccc----cc-eEEecCcCCHHHHHHHHHHHHhCCCCEEEEC
Confidence            467899999999999998877766 7889998887643 111    11 0012344444244444433333379999999


Q ss_pred             CChh-----------h---------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          157 VGGK-----------L---------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       157 ~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      +|..           .               .+.+.+.++++|+++.+++....
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~  131 (244)
T 4e4y_A           78 AGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF  131 (244)
T ss_dssp             CCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGT
T ss_pred             CccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHc
Confidence            8841           0               12233344456899998775543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.18  E-value=0.0011  Score=51.81  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHH----HHHHHhcCCC-ee--eecCChhhHHHHHHHHC--
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKV----DLLKNKFGFD-EA--FNYKEEADLNAALKRYF--  146 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~----~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~--  146 (268)
                      ..+++++||+||++++|..++..+...|++|++++ ++.++.    +.++ ..+.. ..  .|..+.++....+.+..  
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK-ALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH-hcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999987 333322    2222 33432 22  23444323333333221  


Q ss_pred             CCCccEEEeCCC
Q 024411          147 PEGIDIYFENVG  158 (268)
Q Consensus       147 ~~~~d~v~d~~g  158 (268)
                      .+.+|++++++|
T Consensus        89 ~g~id~lv~~Ag  100 (256)
T 3ezl_A           89 VGEIDVLVNNAG  100 (256)
T ss_dssp             TCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            236999999987

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.18  E-value=0.0034  Score=49.59  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++++++|+|+ |++|.++++.+...|++|+++.++.++.+.+.++++....++....+.    +.+   +.+|+++++++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~----~~~---~~~DivVn~t~  189 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE----LEG---HEFDLIINATS  189 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG----GTT---CCCSEEEECCS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHH----hcc---CCCCEEEECCC
Confidence            5789999998 899999999999999999999999888766553554311111111101    111   46999999998


Q ss_pred             hh
Q 024411          159 GK  160 (268)
Q Consensus       159 ~~  160 (268)
                      ..
T Consensus       190 ~~  191 (271)
T 1nyt_A          190 SG  191 (271)
T ss_dssp             CG
T ss_pred             CC
Confidence            63

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.17  E-value=0.0012  Score=49.74  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++||+||+|++|..+++.+...  +|+++++++++.+.+.++++. ..  .|..+.+.+...+.+  .+++|+++.++|.
T Consensus         2 ~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~--~~~id~vi~~ag~   76 (207)
T 2yut_A            2 RVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEE--AGPLDLLVHAVGK   76 (207)
T ss_dssp             EEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHH--HCSEEEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHh--cCCCCEEEECCCc
Confidence            6899999999999888877666  999999998877766534443 22  244443234444443  2479999999873

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.17  E-value=0.0023  Score=53.53  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=56.3

Q ss_pred             cCC-CCCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHH---------------H-HHHHHhcCCCe-e--eecC
Q 024411           75 CSP-KHGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDK---------------V-DLLKNKFGFDE-A--FNYK  133 (268)
Q Consensus        75 ~~~-~~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~---------------~-~~~~~~~g~~~-v--~~~~  133 (268)
                      ..+ +.++++||+||++|+|++++..+.. .|++|+++.++.+.               . +.++ +.|... .  .|..
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-~~G~~a~~i~~Dvt  133 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-AAGLYSKSINGDAF  133 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHH-hcCCcEEEEEecCC
Confidence            445 4688999999999999998888888 99999999865432               1 3344 556432 2  2333


Q ss_pred             Chh---hHHHHHHHHCCCCccEEEeCCCh
Q 024411          134 EEA---DLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus       134 ~~~---~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +.+   .+.+.+.+..+|++|++++++|.
T Consensus       134 d~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          134 SDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             SHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            331   23344444443679999998874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.15  E-value=0.0029  Score=47.45  Aligned_cols=100  Identities=13%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCCe--eeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNK---FGFDE--AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~~  146 (268)
                      ....+.++++||-.|+ | .|..++.+++.. ..+|++++.+++..+.+++.   .+...  ++..+.. +   .+..  
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~---~~~~--  105 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP-E---GLDD--  105 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT-T---TCTT--
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh-h---hhhc--
Confidence            3456889999999996 4 488889999886 36999999999988877632   24332  2222211 1   1110  


Q ss_pred             CCCccEEEeCCC----hhhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYFENVG----GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.+|+++....    ...+..+.+.|+|+|+++....
T Consensus       106 ~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          106 LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            136999987654    2567889999999999988644

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.14  E-value=0.004  Score=49.83  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=62.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC--eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+.+++|+|+ |++|.+++..+...|+ +|++..++.++.+.+.++++..  .+++.       ..+.+.. ..+|++++
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~-------~~~~~~~-~~aDivIn  210 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSL-------AEAETRL-AEYDIIIN  210 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECH-------HHHHHTG-GGCSEEEE
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeH-------HHHHhhh-ccCCEEEE
Confidence            5789999998 9999999999999998 9999999998876665466542  22211       1222211 25999999


Q ss_pred             CCChhhH------HhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLL------DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~------~~~~~~l~~~G~~v~~g~  180 (268)
                      |++....      ......++++..++.+..
T Consensus       211 ~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            9985321      111234566666666544

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.11  E-value=0.00082  Score=53.28  Aligned_cols=95  Identities=20%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|.+|..+++.+...  |.+|+++++++++.+.+. ..+... ..|..+.    +.+.+... ++|+++.+++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~----~~~~~~~~-~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA-AQGITVRQADYGDE----AALTSALQ-GVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH-HTTCEEEECCTTCH----HHHHHHTT-TCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh-cCCCeEEEcCCCCH----HHHHHHHh-CCCEEEEeCC
Confidence            3899999999999999988887  899999998877655554 334322 2244432    23333332 5899999987


Q ss_pred             hh------hHHhHHHhhhc-C-CEEEEEcccc
Q 024411          159 GK------LLDAVLPNMKI-R-GRIAACGMIS  182 (268)
Q Consensus       159 ~~------~~~~~~~~l~~-~-G~~v~~g~~~  182 (268)
                      ..      .....++.+.. + ++++.++...
T Consensus        75 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           75 SEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             -------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            41      23344454443 2 5788876643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.11  E-value=0.00044  Score=54.13  Aligned_cols=74  Identities=14%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHC--CCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYF--PEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~--~~~~d~v~d  155 (268)
                      .++++||+||+|++|..+++.+...|++|+++++++++.+.      .. ...|..+.++..+.+.+..  .+.+|++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            36789999999999999999999999999999987543221      11 1234444323333333221  246899999


Q ss_pred             CCC
Q 024411          156 NVG  158 (268)
Q Consensus       156 ~~g  158 (268)
                      ++|
T Consensus        94 nAg   96 (253)
T 2nm0_A           94 NAG   96 (253)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            887

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.11  E-value=0.0013  Score=50.67  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHC--C-
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYF--P-  147 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~--~-  147 (268)
                      ...++.+||-+|+  +.|..++.+++.+  +.+|+.++.+++..+.+++.   .|....+..... +..+.+.+..  . 
T Consensus        69 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~l~~l~~~~~  145 (232)
T 3cbg_A           69 SLTGAKQVLEIGV--FRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG-PALATLEQLTQGKP  145 (232)
T ss_dssp             HHHTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHHHHTSSS
T ss_pred             HhcCCCEEEEecC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcCC
Confidence            3456789999995  4788899999887  56999999999988877633   254321222221 3333333332  1 


Q ss_pred             -CCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEEc
Q 024411          148 -EGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 -~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~g  179 (268)
                       +.||+|+ |....   ..+..+.+.|+|+|.++.-.
T Consensus       146 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          146 LPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence             4699988 43322   45788899999999988753

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.10  E-value=0.0015  Score=51.42  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      .++++||+||+|++|..+++.+...|++|++.. ++.++.+...++   .+.. .  ..|..+.++..+.+.+..  .+.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999997755 555544433222   2332 2  234444323333333221  136


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus       105 id~li~nAg  113 (267)
T 4iiu_A          105 WYGVVSNAG  113 (267)
T ss_dssp             CSEEEECCC
T ss_pred             ccEEEECCC
Confidence            999999987

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.08  E-value=0.0032  Score=49.03  Aligned_cols=100  Identities=14%  Similarity=0.041  Sum_probs=69.9

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc----CCCe--eeecCChhhHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF----GFDE--AFNYKEEADLNAALKR  144 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~~~  144 (268)
                      ....+.++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+    |...  ++..+.. +.     .
T Consensus        90 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~-~~-----~  161 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGT-G-SGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE-EA-----E  161 (258)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG-GC-----C
T ss_pred             HHcCCCCCCEEEEECC-C-cCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh-hc-----C
Confidence            4456889999999996 5 488899999886  569999999999888877332    5332  2222111 11     0


Q ss_pred             HCCCCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 YFPEGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ...+.+|+|+.....  ..+..+.+.|+++|+++.+..
T Consensus       162 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          162 LEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            112379998865553  578899999999999888744

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.07  E-value=0.0018  Score=50.10  Aligned_cols=102  Identities=15%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHC---
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYF---  146 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~---  146 (268)
                      ....++.+||-+|+ | .|..+..+++..  +.+|++++.++...+.+++.   .|....+..... +....+.+..   
T Consensus        56 ~~~~~~~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~~~~  132 (239)
T 2hnk_A           56 TKISGAKRIIEIGT-F-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG-SALETLQVLIDSK  132 (239)
T ss_dssp             HHHHTCSEEEEECC-T-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCS
T ss_pred             HHhhCcCEEEEEeC-C-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHHHHHHHhhc
Confidence            34567889999996 4 688899999987  57999999999888777633   244321211111 3333233221   


Q ss_pred             -----------C-CCccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          147 -----------P-EGIDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 -----------~-~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                                 . +.||+|+.....    ..+..+.+.|+++|.++...
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                       1 569999876553    35678889999999988753

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.07  E-value=0.0029  Score=46.19  Aligned_cols=101  Identities=17%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCC-eeeecCChhhHHHHHHHHCCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNK---FGFD-EAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...+.++++||-.|+ | .|..+..+++.. +.+|++++.+++..+.+++.   .+.. .+ ....  +....+.. ..+
T Consensus        20 ~~~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~--d~~~~~~~-~~~   93 (178)
T 3hm2_A           20 ALAPKPHETLWDIGG-G-SGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ--GAPRAFDD-VPD   93 (178)
T ss_dssp             HHCCCTTEEEEEEST-T-TTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC--CTTGGGGG-CCS
T ss_pred             HhcccCCCeEEEeCC-C-CCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec--chHhhhhc-cCC
Confidence            346788999999996 4 488899999887 56999999999888877632   2443 23 2222  11112221 114


Q ss_pred             CccEEEeCCCh---hhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVGG---KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g~---~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+|+|+.....   ..+..+.+.|+|+|+++....
T Consensus        94 ~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           94 NPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            79999865543   368899999999999987644

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.06  E-value=0.0029  Score=50.74  Aligned_cols=102  Identities=11%  Similarity=0.068  Sum_probs=70.0

Q ss_pred             hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCC
Q 024411           71 FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        71 l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      +.....++++.+||-+|+ | .|..+..+++..|++|++++.+++..+.+++.   .+...-+..... ++.    +. .
T Consensus        64 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~-~  135 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGC-G-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWE----EF-D  135 (302)
T ss_dssp             HHHTTCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-CGG----GC-C
T ss_pred             HHHHcCCCCcCEEEEeec-c-CcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-CHH----Hc-C
Confidence            334456789999999996 4 48899999999899999999999988877633   243211111111 221    11 3


Q ss_pred             CCccEEEeCCC----------------hhhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVG----------------GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g----------------~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+|+|+....                ...+..+.+.|+|+|+++....
T Consensus       136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            57999886322                1356788899999999987654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.05  E-value=0.0036  Score=46.52  Aligned_cols=97  Identities=12%  Similarity=0.084  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHhcCCCeee---ecCChhhHHHH
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLG----------CYVVGSAGSKDKVDLLKNKFGFDEAF---NYKEEADLNAA  141 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g----------~~V~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~  141 (268)
                      ..++++++||.+|+ |+ |..+..+++..+          .+|++++.++..      .......+   |.... .....
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~-~~~~~   88 (196)
T 2nyu_A           18 QILRPGLRVLDCGA-AP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDP-RTSQR   88 (196)
T ss_dssp             CCCCTTCEEEEETC-CS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSH-HHHHH
T ss_pred             CCCCCCCEEEEeCC-CC-CHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCH-HHHHH
Confidence            34688999999997 65 889999999876          789999987632      01111222   22222 34444


Q ss_pred             HHHHCCC-CccEEEe-----CCCh-------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          142 LKRYFPE-GIDIYFE-----NVGG-------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       142 ~~~~~~~-~~d~v~d-----~~g~-------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+..++ .||+|+.     +.+.             ..+..+.+.|+|+|+++....
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            4454555 7999984     3332             346678889999999987643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.05  E-value=0.0015  Score=53.16  Aligned_cols=101  Identities=18%  Similarity=0.089  Sum_probs=64.1

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCC-ee---eecCChhhHHHHHHHHCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFD-EA---FNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~-~v---~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..++.+|||+||+|.+|..++..+...|.+|++++++.++.+.+.+.+    +.. ..   .|..+. +   .+.+.. .
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~-~---~~~~~~-~   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ-G---AYDEVI-K   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTST-T---TTTTTT-T
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcCh-H---HHHHHH-c
Confidence            345789999999999999999999989999999999887665443221    221 11   233322 1   122211 2


Q ss_pred             CccEEEeCCChh---------------hHHhHHHhhhc---CCEEEEEcccc
Q 024411          149 GIDIYFENVGGK---------------LLDAVLPNMKI---RGRIAACGMIS  182 (268)
Q Consensus       149 ~~d~v~d~~g~~---------------~~~~~~~~l~~---~G~~v~~g~~~  182 (268)
                      ++|+|+.+++..               .....++.+.+   .+++|.+++..
T Consensus        83 ~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~  134 (342)
T 1y1p_A           83 GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTV  134 (342)
T ss_dssp             TCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGG
T ss_pred             CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHH
Confidence            589999998731               11234444442   36888887653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.04  E-value=0.001  Score=51.59  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=48.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH--HHHHHHHCC--CCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL--NAALKRYFP--EGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~~~~~~~--~~~d~v~  154 (268)
                      .++++||+||+|++|..+++.+.. |++|+++++++++.+.+. +......+..+-. +.  ...+.+...  +.+|+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~-~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~~id~lv   80 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA-EIEGVEPIESDIV-KEVLEEGGVDKLKNLDHVDTLV   80 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH-TSTTEEEEECCHH-HHHHTSSSCGGGTTCSCCSEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-hhcCCcceecccc-hHHHHHHHHHHHHhcCCCCEEE
Confidence            367899999999999998888766 899999999998888776 4322222211110 11  011111111  3699999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +++|.
T Consensus        81 ~~Ag~   85 (245)
T 3e9n_A           81 HAAAV   85 (245)
T ss_dssp             ECC--
T ss_pred             ECCCc
Confidence            99874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.04  E-value=0.0033  Score=49.09  Aligned_cols=95  Identities=22%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      +.++++||-.|+ |. |..++.+++ .|++|++++.++...+.+++.   .+..  +..... ++...+   ..+.+|+|
T Consensus       118 ~~~~~~VLDiGc-G~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~-d~~~~~---~~~~fD~V  188 (254)
T 2nxc_A          118 LRPGDKVLDLGT-GS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEG-SLEAAL---PFGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETC-TT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEES-CHHHHG---GGCCEEEE
T ss_pred             cCCCCEEEEecC-CC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC-ChhhcC---cCCCCCEE
Confidence            578899999996 44 777777666 577999999999888777632   2332  222111 332222   12479999


Q ss_pred             EeCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          154 FENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       154 ~d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +...-.    ..+..+.+.|+|+|+++..+.
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence            865432    356778889999999988765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.04  E-value=0.0019  Score=52.82  Aligned_cols=91  Identities=26%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK----DKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~----~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      ..+|||+||+|.+|..+++.+...|.+|+++++++    ++.+.+.+  ..+... ..|..+.+.+.+.+++   .++|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~---~~~d~   86 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE---HEIDI   86 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH---TTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh---CCCCE
Confidence            35799999999999999999999999999999876    44443330  234332 2344443244444442   16999


Q ss_pred             EEeCCChhh---HHhHHHhhhcCC
Q 024411          153 YFENVGGKL---LDAVLPNMKIRG  173 (268)
Q Consensus       153 v~d~~g~~~---~~~~~~~l~~~G  173 (268)
                      ||.+++...   ....++.++..|
T Consensus        87 Vi~~a~~~n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           87 VVSTVGGESILDQIALVKAMKAVG  110 (346)
T ss_dssp             EEECCCGGGGGGHHHHHHHHHHHC
T ss_pred             EEECCchhhHHHHHHHHHHHHHcC
Confidence            999998632   334555555444

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.04  E-value=0.0057  Score=54.05  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=64.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-H-HHHHHHHhcCCCeeeecCC--h--hhHHHHHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-D-KVDLLKNKFGFDEAFNYKE--E--ADLNAALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~-~~~~~~~~~g~~~v~~~~~--~--~~~~~~~~~~~~~~~d~  152 (268)
                      .++.++|+||++|+|.+.++.+...|++|++.++.. + ..+.++ +.+...+....+  .  +.+.+.+.+.. |.+|+
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~-~~g~~~~~~~~Dv~~~~~~~~~~~~~~~-G~iDi  398 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIK-AAGGEAWPDQHDVAKDSEAIIKNVIDKY-GTIDI  398 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHH-hcCCeEEEEEcChHHHHHHHHHHHHHhc-CCCCE
Confidence            468899999999999999999999999999987422 2 233444 444432221111  1  12223333222 46999


Q ss_pred             EEeCCCh-h--h-----------------------HHhHHHhhhc--CCEEEEEccccc
Q 024411          153 YFENVGG-K--L-----------------------LDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       153 v~d~~g~-~--~-----------------------~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      +++++|- .  .                       .+.+++.+..  +|++|.+++..+
T Consensus       399 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag  457 (604)
T 2et6_A          399 LVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSG  457 (604)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhh
Confidence            9999883 1  0                       2345555643  589999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.03  E-value=0.015  Score=40.37  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      .+|+|+|+ |.+|..+++.+...|.+|+++++++++.+.+.+.++.. ++..+.. +. ..+.+..-.++|+++-+++..
T Consensus         5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~-~~~~d~~-~~-~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL-VINGDCT-KI-KTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE-EEESCTT-SH-HHHHHTTTTTCSEEEECCSCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE-EEEcCCC-CH-HHHHHcCcccCCEEEEeeCCc
Confidence            57999997 99999999999999999999999988887776344543 2222211 11 123322223699999999863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.02  E-value=0.0011  Score=51.17  Aligned_cols=101  Identities=16%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ....+.++++||.+|+ | .|..+..+++..+.+|++++.++...+.+++.   .+...+ ..... +....+..  .+.
T Consensus        85 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~~--~~~  158 (235)
T 1jg1_A           85 EIANLKPGMNILEVGT-G-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILG-DGSKGFPP--KAP  158 (235)
T ss_dssp             HHHTCCTTCCEEEECC-T-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGGGCCGG--GCC
T ss_pred             HhcCCCCCCEEEEEeC-C-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEC-CcccCCCC--CCC
Confidence            3346888999999996 4 68889999988778999999999888777632   343322 11111 11101110  125


Q ss_pred             ccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          150 IDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       150 ~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|+|+.+... .....+.+.|+++|+++..-
T Consensus       159 fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          159 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999977665 44567889999999987653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.02  E-value=0.0024  Score=48.38  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ....+.++++||.+|+ | .|..+..+++..+  .+|++++.+++..+.+++.   .+...+--...  +....+.  ..
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~--~~  144 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG--DGTLGYE--PL  144 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES--CGGGCCG--GG
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC--CcccCCC--CC
Confidence            4446789999999996 4 5888999999886  7999999999888777633   23332111111  1111111  02


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+|+|+.+... .....+.+.|+|+|+++..-.
T Consensus       145 ~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCeeEEEECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            379999977665 344688899999999887633

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.01  E-value=0.0035  Score=53.33  Aligned_cols=81  Identities=16%  Similarity=0.261  Sum_probs=53.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCCe-eeecCChhhHH---HHHHHHCCCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD--KVDLLKNKFGFDE-AFNYKEEADLN---AALKRYFPEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~--~~~~~~~~~g~~~-v~~~~~~~~~~---~~~~~~~~~~~d~  152 (268)
                      +++++||+||+|++|..+++.+...|++|+++.++..  +.....++.+... ..|..+.+...   +.+.+..++.+|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~  291 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI  291 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence            5789999999999999999999899999999987543  3333322455432 23444331333   3333333335999


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++++|.
T Consensus       292 lV~nAGv  298 (454)
T 3u0b_A          292 LVNNAGI  298 (454)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0072  Score=51.57  Aligned_cols=94  Identities=14%  Similarity=0.162  Sum_probs=62.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ++.+|+|+|+ |++|..++..+... +.+|+++.++.++.+.+.+..+... .++..+.+++.+.+.     ++|+|++|
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~-----~~DvVIn~   95 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA-----DNDVVISL   95 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH-----TSSEEEEC
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc-----CCCEEEEC
Confidence            3568999998 99999999888877 6799999999888776652333321 234333213333332     49999999


Q ss_pred             CChh-hHHhHHHhhhcCCEEEEE
Q 024411          157 VGGK-LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g~~-~~~~~~~~l~~~G~~v~~  178 (268)
                      ++.. .......++.++-.++..
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             CchhhhHHHHHHHHhcCCEEEEe
Confidence            9963 333344566666666654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.01  E-value=0.0037  Score=49.24  Aligned_cols=94  Identities=17%  Similarity=0.068  Sum_probs=64.8

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||....+...|.....--.|++++|.|+++.+|..++.++...|++|++..+...                     ++.
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~---------------------~L~  198 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK---------------------DLS  198 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------CHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch---------------------hHH
Confidence            34444444555544433458999999999677899999999999999988874311                     333


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.++     .+|+++.++|.+.+ --.+.++++..++.+|.
T Consensus       199 ~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi  233 (285)
T 3p2o_A          199 LYTR-----QADLIIVAAGCVNL-LRSDMVKEGVIVVDVGI  233 (285)
T ss_dssp             HHHT-----TCSEEEECSSCTTC-BCGGGSCTTEEEEECCC
T ss_pred             HHhh-----cCCEEEECCCCCCc-CCHHHcCCCeEEEEecc
Confidence            3333     38999999997433 22355788888888876

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.99  E-value=0.00066  Score=55.28  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH---H-HHHHHhc------CCC-e--eeecCChhhHHHHHHHHC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK---V-DLLKNKF------GFD-E--AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~---~-~~~~~~~------g~~-~--v~~~~~~~~~~~~~~~~~  146 (268)
                      ++++||+||+|++|..++..+...|++|+.+.++..+   . +.+. ..      +.. .  ..|..+.+++...+.+..
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWE-AARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHH-HHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHH-HhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            5789999999999999999999999988877654322   1 1222 22      121 1  234454424444444443


Q ss_pred             CCCccEEEeCCC
Q 024411          147 PEGIDIYFENVG  158 (268)
Q Consensus       147 ~~~~d~v~d~~g  158 (268)
                      .+.+|++++++|
T Consensus        81 ~g~iD~lVnnAG   92 (327)
T 1jtv_A           81 EGRVDVLVCNAG   92 (327)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            347999999887

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.99  E-value=0.0032  Score=50.44  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-------HHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-------DKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-------~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++       ++.+.+.+  ..+... ..|..+.+.+.+.+    . ++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~----~-~~   77 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAI----K-QV   77 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH----T-TC
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHH----h-CC
Confidence            5699999999999999999988899999999876       54443320  234432 23444431333222    2 59


Q ss_pred             cEEEeCCChh---hHHhHHHhhhcC---CEEE
Q 024411          151 DIYFENVGGK---LLDAVLPNMKIR---GRIA  176 (268)
Q Consensus       151 d~v~d~~g~~---~~~~~~~~l~~~---G~~v  176 (268)
                      |+|+.+++..   .....++.++..   .+++
T Consensus        78 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             SEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            9999999852   223444444432   4665

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.98  E-value=0.0022  Score=48.30  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe--eeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE--AFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~--v~~~~~~~~~~~~~~~~~~  147 (268)
                      ....+.++++||-.|+ | .|..+..+++. +.+|++++.+++..+.+++.+   +...  ++..+.. .   ....  .
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~---~~~~--~  141 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGW-Q---GWQA--R  141 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-G---CCGG--G
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcc-c---CCcc--C
Confidence            4456789999999996 4 58888888887 889999999999888776432   4332  2222111 1   1111  2


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.||+|+..... .....+.+.|+|+|+++..-.
T Consensus       142 ~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             CCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             CCccEEEEccchhhhhHHHHHhcccCcEEEEEEc
Confidence            379999976554 344578899999999887633

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.98  E-value=0.0045  Score=48.75  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             cchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHH
Q 024411           61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNA  140 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  140 (268)
                      ||....+..++.+..---.|.+++|.|+++.+|..+++++...|++|++..+...                     ++.+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~L~~  200 (285)
T 3l07_A          142 SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT---------------------DLKS  200 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHH
Confidence            4444444455544433357899999998666899999999999999988764211                     3333


Q ss_pred             HHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          141 ALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .++     .+|+++.++|.+.+ --.+.++++..++.+|.
T Consensus       201 ~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi  234 (285)
T 3l07_A          201 HTT-----KADILIVAVGKPNF-ITADMVKEGAVVIDVGI  234 (285)
T ss_dssp             HHT-----TCSEEEECCCCTTC-BCGGGSCTTCEEEECCC
T ss_pred             hcc-----cCCEEEECCCCCCC-CCHHHcCCCcEEEEecc
Confidence            333     38999999997433 22355788888888876

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.98  E-value=0.011  Score=47.48  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC---HHHHHHHHHhcC----CC-eeeecCChhhHHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS---KDKVDLLKNKFG----FD-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~---~~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+++++|+|+ |+.|.+++..+...|+ +|+++.|+   .++.+.+.++++    .. .+++..+.+.+.+.+.     .
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~-----~  220 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALA-----S  220 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-----H
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhcc-----C
Confidence            5789999998 9999999999999999 89999999   666655443332    21 2333332101122333     3


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++|++.
T Consensus       221 ~DiIINaTp~  230 (312)
T 3t4e_A          221 ADILTNGTKV  230 (312)
T ss_dssp             CSEEEECSST
T ss_pred             ceEEEECCcC
Confidence            8999999873

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.98  E-value=0.0062  Score=48.87  Aligned_cols=91  Identities=21%  Similarity=0.247  Sum_probs=57.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCccE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-----KDKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-----~~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      .+|+|+||+|.+|..+++.+...|.+|++++++     +++.+.+.+  ..+... ..|..+.+.+.+.+    . ++|+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~----~-~~d~   79 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL----K-QVDV   79 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH----T-TCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH----h-CCCE
Confidence            569999999999999999999899999999987     444443330  223321 23444431333332    2 5999


Q ss_pred             EEeCCChh-------hHHhHHHhhhcCC---EEE
Q 024411          153 YFENVGGK-------LLDAVLPNMKIRG---RIA  176 (268)
Q Consensus       153 v~d~~g~~-------~~~~~~~~l~~~G---~~v  176 (268)
                      |+.+++..       .....++.++..|   ++|
T Consensus        80 vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           80 VISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             EEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             EEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            99998742       2234455555444   666

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.96  E-value=0.0055  Score=51.41  Aligned_cols=85  Identities=13%  Similarity=0.037  Sum_probs=52.6

Q ss_pred             cCCCCCcEEEEecCcchHHHH--HHHHHHHcCCEEEEEeCCH---------------HHHHHHHHhcCCCe---eeecCC
Q 024411           75 CSPKHGECVFISAASGAVGQL--VGQFAKLLGCYVVGSAGSK---------------DKVDLLKNKFGFDE---AFNYKE  134 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~--~i~l~~~~g~~V~~~~~~~---------------~~~~~~~~~~g~~~---v~~~~~  134 (268)
                      .....++++||+||++|+|.+  .+..+...|++|++++++.               +......++.|...   ..|..+
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd  134 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFS  134 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCC
Confidence            445778999999999999998  5555556699999988743               22222221455432   224444


Q ss_pred             hhhHHHHHHHHC--CCCccEEEeCCCh
Q 024411          135 EADLNAALKRYF--PEGIDIYFENVGG  159 (268)
Q Consensus       135 ~~~~~~~~~~~~--~~~~d~v~d~~g~  159 (268)
                      .++....+.+..  .|.+|++++++|.
T Consensus       135 ~~~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          135 NETKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            323333333221  2479999998874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.95  E-value=0.0063  Score=47.50  Aligned_cols=100  Identities=10%  Similarity=0.041  Sum_probs=69.4

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-C--eeeecCChhhHHHHHHHHCCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-D--EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~--~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ....+.++.+||-.|+  |.|..+..+++..+++|++++.++...+.+++.... .  ..+..+.. ++     ....+.
T Consensus        49 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-----~~~~~~  120 (266)
T 3ujc_A           49 SDIELNENSKVLDIGS--GLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TK-----EFPENN  120 (266)
T ss_dssp             TTCCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TC-----CCCTTC
T ss_pred             HhcCCCCCCEEEEECC--CCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cC-----CCCCCc
Confidence            4456788999999996  368888999988799999999999999998833322 1  12222211 11     011237


Q ss_pred             ccEEEeCCCh---------hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENVGG---------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+....-         ..+..+.+.|+|+|+++....
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999865321         346788899999999888754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.93  E-value=0.0045  Score=51.33  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             cCC-CCCcEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHH---------------HH-HHHHhcCCCe-e--eecC
Q 024411           75 CSP-KHGECVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDK---------------VD-LLKNKFGFDE-A--FNYK  133 (268)
Q Consensus        75 ~~~-~~~~~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~---------------~~-~~~~~~g~~~-v--~~~~  133 (268)
                      ..+ ..++++||+||++|+|++++..+.. .|++|+++.++.+.               .. .++ +.|... .  .|..
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~-~~G~~a~~i~~Dvt  119 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA-QKGLYAKSINGDAF  119 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTT
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHH-hcCCceEEEECCCC
Confidence            444 5688999999999999998888888 99999998765321               12 333 455432 2  2333


Q ss_pred             Chhh---HHHHHHHHCCCCccEEEeCCCh
Q 024411          134 EEAD---LNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus       134 ~~~~---~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +.+.   +.+.+.+.. |.+|++++++|.
T Consensus       120 d~~~v~~~v~~i~~~~-G~IDiLVNNAG~  147 (405)
T 3zu3_A          120 SDEIKQLTIDAIKQDL-GQVDQVIYSLAS  147 (405)
T ss_dssp             SHHHHHHHHHHHHHHT-SCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHc-CCCCEEEEcCcc
Confidence            3312   233333332 479999999874

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.91  E-value=0.0042  Score=52.07  Aligned_cols=93  Identities=12%  Similarity=0.054  Sum_probs=64.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHhcCC-----Ce--eeecCChhhHHHHHHHHCCCCcc
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG---CYVVGSAGSKDKVDLLKNKFGF-----DE--AFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g---~~V~~~~~~~~~~~~~~~~~g~-----~~--v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +|+|+|+ |++|..+++.+...|   .+|++.+++.++.+.+.++++.     ..  ..|..+.+++.+.+.+.   ++|
T Consensus         3 kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~---~~D   78 (405)
T 4ina_A            3 KVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV---KPQ   78 (405)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH---CCS
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh---CCC
Confidence            6899998 999999999888887   4999999999887766544431     11  23444332444444432   589


Q ss_pred             EEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+++++. ........++..+-.++.+
T Consensus        79 vVin~ag~~~~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           79 IVLNIALPYQDLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHTCCEEES
T ss_pred             EEEECCCcccChHHHHHHHHhCCCEEEe
Confidence            99999997 4445555667777777654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.91  E-value=0.0032  Score=46.88  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCC-C--eeeecCChhhHHHHHHHHCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGF-D--EAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~-~--~v~~~~~~~~~~~~~~~~~~  147 (268)
                      .++++++||-.|+ | .|..+..+++..+  .+|++++.+++..+.+++.   .+. .  .++..+.. +    +.....
T Consensus        19 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~----~~~~~~   91 (197)
T 3eey_A           19 FVKEGDTVVDATC-G-NGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ-N----MDKYID   91 (197)
T ss_dssp             HCCTTCEEEESCC-T-TSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG-G----GGGTCC
T ss_pred             cCCCCCEEEEcCC-C-CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH-H----Hhhhcc
Confidence            5788999999986 4 3888888998864  5999999999888777633   233 1  12222211 1    111223


Q ss_pred             CCccEEEeCCCh----------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVGG----------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+|+|+...+-                ..+..+.+.|+++|+++....
T Consensus        92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            479998854421                467888999999999887654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.90  E-value=0.0064  Score=48.65  Aligned_cols=92  Identities=21%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS------KDKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~------~~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++      +++.+.+.+  ..+... ..|..+.+.+.+.++     ++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~-----~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK-----NV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH-----TC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc-----CC
Confidence            3579999999999999999999999999999986      334333320  223322 234444323433333     49


Q ss_pred             cEEEeCCChh---hHHhHHHhhhcC---CEEE
Q 024411          151 DIYFENVGGK---LLDAVLPNMKIR---GRIA  176 (268)
Q Consensus       151 d~v~d~~g~~---~~~~~~~~l~~~---G~~v  176 (268)
                      |+||.+++..   .....++.++..   .+++
T Consensus        79 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           79 DVVISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             SEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             CEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            9999999853   223444444432   4665

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.90  E-value=0.0028  Score=51.57  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=51.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHhcCC--C-ee--eecCChhhHHHHHHHHCCCCccE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV--DLLKNKFGF--D-EA--FNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~--~~~~~~~g~--~-~v--~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      +.+|||+||+|.+|..+++.+...|++|+++++++++.  +.+. .++.  . ..  .|..+.+.+.+.+...   .+|+
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~d~   78 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK-ELGIENDVKIIHMDLLEFSNIIRTIEKV---QPDE   78 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHH-HTTCTTTEEECCCCTTCHHHHHHHHHHH---CCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHh-hccccCceeEEECCCCCHHHHHHHHHhc---CCCE
Confidence            56899999999999999999988999999999876532  2333 3321  1 11  2443331333333332   5899


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      |+.+++.
T Consensus        79 vih~A~~   85 (345)
T 2z1m_A           79 VYNLAAQ   85 (345)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.89  E-value=0.0004  Score=53.73  Aligned_cols=98  Identities=17%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++||+||+|++|..+++.+...|+  +|+++++++++.+... .-+... ..|..+.    +.+.+.. .++|+++++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~----~~~~~~~-~~~d~vi~~   91 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKL----DDYASAF-QGHDVGFCC   91 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGG----GGGGGGG-SSCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-cCCceEEecCcCCH----HHHHHHh-cCCCEEEEC
Confidence            57899999999999999999999999  9999998765433221 111111 1233222    1222222 259999999


Q ss_pred             CChhh---------------HHhHHHhhhc--CCEEEEEccccc
Q 024411          157 VGGKL---------------LDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       157 ~g~~~---------------~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      +|...               ....++.+..  .+++|.++....
T Consensus        92 ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           92 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            98411               1233344443  268888877543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.0071  Score=48.63  Aligned_cols=87  Identities=22%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.+++.++ +.+. +.|... .      ++.+.+++     .|+++-++.
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~-~------~l~ell~~-----aDvV~l~~p  205 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNE-ERAK-EVNGKF-V------DLETLLKE-----SDVVTIHVP  205 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HTTCEE-C------CHHHHHHH-----CSEEEECCC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-hcCccc-c------CHHHHHhh-----CCEEEEecC
Confidence            5789999997 999999999999999999999988766 4555 666532 1      23333332     799998876


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...+..+++++.++.++.
T Consensus       206 ~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          206 LVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             CChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            4 2    12 356778899999998876

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.88  E-value=0.0013  Score=50.84  Aligned_cols=73  Identities=14%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC-CCCccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~~~d~v~d~~g  158 (268)
                      ++++||+||+|++|..+++.+...|++|++++++++    .. ++. ....|..+.+++.+.+.+.. .+++|++++++|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~-~~~-~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE----GE-DLI-YVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC----SS-SSE-EEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc----cc-ceE-EEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            468999999999999999999999999999998754    11 110 01234444323333333320 136899999887

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.88  E-value=0.0055  Score=47.62  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHC----
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYF----  146 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~----  146 (268)
                      ...++++||-+|+  +.|..++.+++.+  +.+|+.++.+++..+.+++.   .|...-+..... +..+.+....    
T Consensus        76 ~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~  152 (247)
T 1sui_A           76 KLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIKDEK  152 (247)
T ss_dssp             HHTTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSGG
T ss_pred             HhhCcCEEEEeCC--CcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHHHHHHhccC
Confidence            3456789999985  5688888999886  57999999999888777632   344221212111 2222222221    


Q ss_pred             -CCCccEEEeCCC--h--hhHHhHHHhhhcCCEEEEEc
Q 024411          147 -PEGIDIYFENVG--G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 -~~~~d~v~d~~g--~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                       .+.||+|+-...  .  ..+..+.+.|+|+|.++.-.
T Consensus       153 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          153 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence             247998874332  1  45788999999999988643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.88  E-value=0.028  Score=39.94  Aligned_cols=96  Identities=9%  Similarity=0.021  Sum_probs=60.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhcCC-CeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKNKFGF-DEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      ..+++|.|+ |.+|...++.+...|.+|++++++ +++.+.+.+.+.. ..++..+.. + .+.+.+..-.++|.++-++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~-~-~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSN-D-SSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTT-S-HHHHHHHTTTTCSEEEECS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCC-C-HHHHHHcChhhCCEEEEec
Confidence            457899997 999999999999999999999986 4555555423321 233333321 1 2234443223799999999


Q ss_pred             ChhhH----HhHHHhhhcCCEEEEE
Q 024411          158 GGKLL----DAVLPNMKIRGRIAAC  178 (268)
Q Consensus       158 g~~~~----~~~~~~l~~~G~~v~~  178 (268)
                      +....    ....+.+.+..+++..
T Consensus        80 ~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           80 DNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            86322    2333444455566654

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.88  E-value=0.009  Score=51.38  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             CCC--cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH-------HHHHHHhcCCCe-e--eecCChhhHHHHHHH
Q 024411           78 KHG--ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK-------VDLLKNKFGFDE-A--FNYKEEADLNAALKR  144 (268)
Q Consensus        78 ~~~--~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~-------~~~~~~~~g~~~-v--~~~~~~~~~~~~~~~  144 (268)
                      +++  .++||+||+|++|..+++.+...|+ +|+.+.++...       .+.+. ..|... +  .|..+.+.+...+.+
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELE-QLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHH
Confidence            445  8999999999999999999888999 78888876321       22333 455532 2  244443244444444


Q ss_pred             HCC-CCccEEEeCCCh
Q 024411          145 YFP-EGIDIYFENVGG  159 (268)
Q Consensus       145 ~~~-~~~d~v~d~~g~  159 (268)
                      ... +++|.+|+++|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            333 379999998873

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.87  E-value=0.0057  Score=49.13  Aligned_cols=69  Identities=14%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +.+|||+||+|.+|..+++.+...|.+|++++++..+    . .   ....|..+.+.+.+.+...   ++|+|+.+++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~-~---~~~~Dl~d~~~~~~~~~~~---~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR----P-K---FEQVNLLDSNAVHHIIHDF---QPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------CHHHHHHH---CCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC----C-C---eEEecCCCHHHHHHHHHhh---CCCEEEECCcc
Confidence            4689999999999999999999999999999976543    1 1   0111222211233333322   58999998874

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.87  E-value=0.0059  Score=48.06  Aligned_cols=93  Identities=18%  Similarity=0.105  Sum_probs=65.1

Q ss_pred             cchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHH
Q 024411           61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNA  140 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  140 (268)
                      ||....+...|....---.|++++|.|.++.+|..++.++...|++|++..+...                     ++.+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~---------------------~L~~  200 (286)
T 4a5o_A          142 PCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR---------------------DLAD  200 (286)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS---------------------CHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc---------------------CHHH
Confidence            4444445555544433457999999998677999999999999999998864211                     3333


Q ss_pred             HHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          141 ALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+++     +|+++.++|.+.+ --.+.++++..++.+|.
T Consensus       201 ~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi  234 (286)
T 4a5o_A          201 HVSR-----ADLVVVAAGKPGL-VKGEWIKEGAIVIDVGI  234 (286)
T ss_dssp             HHHT-----CSEEEECCCCTTC-BCGGGSCTTCEEEECCS
T ss_pred             Hhcc-----CCEEEECCCCCCC-CCHHHcCCCeEEEEecc
Confidence            4432     8999999997433 22355788888888876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.87  E-value=0.0064  Score=46.91  Aligned_cols=101  Identities=14%  Similarity=0.090  Sum_probs=65.9

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHH---C-
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRY---F-  146 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~---~-  146 (268)
                      ...+..+||-+|+  +.|..++.+++.+  +.+|+.++.+++..+.+++.   .|....+..... +..+.+...   . 
T Consensus        67 ~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~  143 (237)
T 3c3y_A           67 KLVNAKKTIEVGV--FTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES-DAMLALDNLLQGQE  143 (237)
T ss_dssp             HHTTCCEEEEECC--TTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSTT
T ss_pred             HhhCCCEEEEeCC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhccC
Confidence            4456789999985  5688888888886  57999999999988877633   354321222111 222222222   1 


Q ss_pred             -CCCccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          147 -PEGIDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 -~~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                       .+.||+|+-....    ..+..+.+.|+|+|.++.-.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence             2479988844332    35678899999999987653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.87  E-value=0.005  Score=48.63  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc----C--CCe--eeecCChhhHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF----G--FDE--AFNYKEEADLNAAL  142 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~----g--~~~--v~~~~~~~~~~~~~  142 (268)
                      ....+.++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+    |  ...  ++..+.. +.    
T Consensus        93 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~-~~----  165 (280)
T 1i9g_A           93 HEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA-DS----  165 (280)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-GC----
T ss_pred             HHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH-hc----
Confidence            4456889999999996 4 688888999876  469999999999888776332    4  222  2221111 11    


Q ss_pred             HHHCCCCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          143 KRYFPEGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       143 ~~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       ....+.+|+|+.....  ..+..+.+.|+++|+++....
T Consensus       166 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          166 -ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             -CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             -CCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence             0112379988865543  678899999999999888754

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.87  E-value=0.009  Score=47.41  Aligned_cols=95  Identities=14%  Similarity=0.039  Sum_probs=65.2

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||....+...|....---.|.+++|.|+++.+|..++.++...|++|++..+...                     ++.
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~  203 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TED  203 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cch
Confidence            34444455555554444458999999998666899999999999999998875221                     222


Q ss_pred             --HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEccc
Q 024411          140 --AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       140 --~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                        +.++     .+|+++.++|.+.+ --...++++..++.+|..
T Consensus       204 l~~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          204 MIDYLR-----TADIVIAAMGQPGY-VKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHHHH-----TCSEEEECSCCTTC-BCGGGSCTTCEEEECCCE
T ss_pred             hhhhhc-----cCCEEEECCCCCCC-CcHHhcCCCcEEEEEecc
Confidence              2333     38999999997432 122457888888888763

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.86  E-value=0.008  Score=47.63  Aligned_cols=100  Identities=11%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ....+.++.+||-+|+  |.|..+..+++..|++|++++.+++..+.+++..   +...-+..... ++    .+. ++.
T Consensus        58 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~----~~~-~~~  129 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGC--GWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GW----EQF-DEP  129 (287)
T ss_dssp             TTTTCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CG----GGC-CCC
T ss_pred             HHcCCCCcCEEEEECC--cccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-Ch----hhC-CCC
Confidence            4456788999999996  3488888999888999999999999888877332   32211111111 11    111 256


Q ss_pred             ccEEEeC-----CC--h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFEN-----VG--G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~-----~g--~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+..     .+  .  ..+..+.+.|+|+|+++....
T Consensus       130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9998754     22  1  457888999999999887654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.85  E-value=0.0098  Score=51.39  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=53.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH---H----HHHHHhcCCCe-e--eecCChhhHHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK---V----DLLKNKFGFDE-A--FNYKEEADLNAALKRY  145 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~---~----~~~~~~~g~~~-v--~~~~~~~~~~~~~~~~  145 (268)
                      ++++.++||+||+|++|..++..+...|+ +|+.+.++...   .    +.+. ..|... +  .|..+.+.+...+.+ 
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dvtd~~~v~~~~~~-  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELR-GHGCEVVHAACDVAERDALAALVTA-  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHH-TTTCEEEEEECCSSCHHHHHHHHHH-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHH-hcCCEEEEEEeCCCCHHHHHHHHhc-
Confidence            46789999999999999999999988999 68888887531   2    2233 344421 2  244443234444433 


Q ss_pred             CCCCccEEEeCCC
Q 024411          146 FPEGIDIYFENVG  158 (268)
Q Consensus       146 ~~~~~d~v~d~~g  158 (268)
                        +.+|.+|.++|
T Consensus       334 --~~ld~VVh~AG  344 (511)
T 2z5l_A          334 --YPPNAVFHTAG  344 (511)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCcEEEECCc
Confidence              46999999987

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.84  E-value=0.014  Score=45.93  Aligned_cols=91  Identities=14%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC--CeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF--DEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+++++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+.++++.  ..+..+.   ++.       ...+|++++
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~---~l~-------~~~~DivIn  187 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE---ALE-------GQSFDIVVN  187 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG---GGT-------TCCCSEEEE
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH---Hhc-------ccCCCEEEE
Confidence            5789999998 9999999999999997 999999999987776546653  1222222   211       136999999


Q ss_pred             CCChhhHH----hHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLLD----AVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~~----~~~~~l~~~G~~v~~g~  180 (268)
                      +++.....    .....++++..++.+..
T Consensus       188 aTp~gm~~~~~~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          188 ATSASLTADLPPLPADVLGEAALAYELAY  216 (272)
T ss_dssp             CSSGGGGTCCCCCCGGGGTTCSEEEESSC
T ss_pred             CCCCCCCCCCCCCCHHHhCcCCEEEEeec
Confidence            98742111    12345666666665533

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.82  E-value=0.006  Score=48.97  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      .+|||+||+|.+|..+++.+...|.+|+++++++.+.+ +.   +.. ++..+-  . .+.+.+... ++|+|+.+++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~---~~~-~~~~Dl--~-~~~~~~~~~-~~d~Vih~a~~~   73 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN---DYE-YRVSDY--T-LEDLINQLN-DVDAVVHLAATR   73 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCE-EEECCC--C-HHHHHHHTT-TCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC---ceE-EEEccc--c-HHHHHHhhc-CCCEEEEccccC
Confidence            57999999999999999999999999999998844444 32   332 221111  2 334444433 699999998741


Q ss_pred             --------------hHHhHHHhhhcC--CEEEEEccc
Q 024411          161 --------------LLDAVLPNMKIR--GRIAACGMI  181 (268)
Q Consensus       161 --------------~~~~~~~~l~~~--G~~v~~g~~  181 (268)
                                    .....++.+...  .++|.++..
T Consensus        74 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~  110 (311)
T 3m2p_A           74 GSQGKISEFHDNEILTQNLYDACYENNISNIVYASTI  110 (311)
T ss_dssp             CSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccH
Confidence                          123444444443  368877653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.82  E-value=0.0017  Score=52.71  Aligned_cols=80  Identities=11%  Similarity=0.134  Sum_probs=49.9

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHhcC--CC-ee--eecCChhhHHHHHHHHCCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV--DLLKNKFG--FD-EA--FNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~--~~~~~~~g--~~-~v--~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..+++.+|||+||+|.+|..+++.+...|.+|+++++++.+.  ..+. .+.  .. ..  .|..+.+.+.+.+...   
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   85 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELGIEGDIQYEDGDMADACSVQRAVIKA---   85 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTTCGGGEEEEECCTTCHHHHHHHHHHH---
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchh-hccccCceEEEECCCCCHHHHHHHHHHc---
Confidence            456789999999999999999999998999999999875431  2222 221  11 12  2333331333333322   


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|+|+.+++.
T Consensus        86 ~~d~Vih~A~~   96 (335)
T 1rpn_A           86 QPQEVYNLAAQ   96 (335)
T ss_dssp             CCSEEEECCSC
T ss_pred             CCCEEEECccc
Confidence            58999999873

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.82  E-value=0.0029  Score=48.37  Aligned_cols=102  Identities=11%  Similarity=0.061  Sum_probs=66.8

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHC--C
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~--~  147 (268)
                      ....++.+||-+|+  +.|..++.+++..  +.+|++++.++...+.+++.+   |....+..... +..+.+....  +
T Consensus        65 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~~~~~~~~  141 (229)
T 2avd_A           65 ARLIQAKKALDLGT--FTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDELLAAG  141 (229)
T ss_dssp             HHHTTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTT
T ss_pred             HHhcCCCEEEEEcC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc-CHHHHHHHHHhcC
Confidence            44567889999995  3788889999876  569999999998887776332   44211111111 2222332221  1


Q ss_pred             --CCccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          148 --EGIDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 --~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                        +.+|+|+-....    ..+..+.+.|+++|.++...
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence              469988754332    45788899999999988754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.82  E-value=0.023  Score=43.27  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHh---cC-----CC--eeeecCChhhHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG------CYVVGSAGSKDKVDLLKNK---FG-----FD--EAFNYKEEADLN  139 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g------~~V~~~~~~~~~~~~~~~~---~g-----~~--~v~~~~~~~~~~  139 (268)
                      .++++.+||-+|+ |. |..+..+++..+      .+|++++.+++..+.+++.   .+     ..  .++..+......
T Consensus        77 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-GS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESC-TT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECC-CC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            5788999999996 44 888889998876      5999999999888777632   23     22  222222110110


Q ss_pred             HHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .....  .+.||+|+..... ..+..+.+.|+++|+++..-.
T Consensus       155 ~~~~~--~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKE--LGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHH--HCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCcc--CCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence            00011  1369999876665 566888999999999887644

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.81  E-value=0.011  Score=46.35  Aligned_cols=92  Identities=13%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||....+..++....  -.|.+++|.|+++-+|..+++++...|++|++..+..                    . ++.
T Consensus       132 ~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------------~-~L~  188 (276)
T 3ngx_A          132 VPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------------K-DIG  188 (276)
T ss_dssp             CCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-CHH
T ss_pred             CCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------------c-cHH
Confidence            3444455555665554  6899999999866799999999999999999886421                    1 444


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+++     +|+++.++|.+.+ --...++++..++.+|.
T Consensus       189 ~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi  223 (276)
T 3ngx_A          189 SMTRS-----SKIVVVAVGRPGF-LNREMVTPGSVVIDVGI  223 (276)
T ss_dssp             HHHHH-----SSEEEECSSCTTC-BCGGGCCTTCEEEECCC
T ss_pred             Hhhcc-----CCEEEECCCCCcc-ccHhhccCCcEEEEecc
Confidence            45554     8999999997432 12245688888888876

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.80  E-value=0.0053  Score=48.97  Aligned_cols=74  Identities=19%  Similarity=0.087  Sum_probs=50.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHH--HHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKV--DLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~--~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ..+|||+||+|.+|..+++.+...| .+|+++++++++.  ..+. ..+... ..|..+.+.+...+    . ++|.++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~-~~~~~~~~~D~~d~~~l~~~~----~-~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR-LQGAEVVQGDQDDQVIMELAL----N-GAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH-HTTCEEEECCTTCHHHHHHHH----T-TCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH-HCCCEEEEecCCCHHHHHHHH----h-cCCEEEE
Confidence            4689999999999999999888888 8999999887653  2233 334432 23444431232222    2 4999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      +++.
T Consensus        79 ~a~~   82 (299)
T 2wm3_A           79 VTNY   82 (299)
T ss_dssp             CCCH
T ss_pred             eCCC
Confidence            9874

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.79  E-value=0.0036  Score=48.67  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~~  146 (268)
                      ....+.++.+||-.|+ | .|..+..+++..+.+|++++.++...+.+++.   .+..   ..+..+.. ++.      .
T Consensus        30 ~~~~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~------~  100 (256)
T 1nkv_A           30 RVLRMKPGTRILDLGS-G-SGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYV------A  100 (256)
T ss_dssp             HHTCCCTTCEEEEETC-T-TCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCC------C
T ss_pred             HhcCCCCCCEEEEECC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCC------c
Confidence            4456889999999996 3 48888899998899999999999887777632   2432   12222211 110      1


Q ss_pred             CCCccEEEeCC-----Ch--hhHHhHHHhhhcCCEEEEEc
Q 024411          147 PEGIDIYFENV-----GG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 ~~~~d~v~d~~-----g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+.||+|+...     ..  ..+..+.+.|+|+|+++...
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            23799998521     11  45788889999999988764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.79  E-value=0.0091  Score=43.91  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCC-CeeeecCChhhHHHHHHHHCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGF-DEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ....+.++.+||-.|+ |. |..+..+++.. .+|++++.++...+.+++.   .+. ..+ ..... +....+..  .+
T Consensus        27 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~-d~~~~~~~--~~   99 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGC-GT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEG-DAPEALCK--IP   99 (192)
T ss_dssp             HHHCCCTTCEEEEESC-TT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEES-CHHHHHTT--SC
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcce-EEEec-CHHHhccc--CC
Confidence            3446788999999996 44 88888887766 8999999999888877632   343 221 11111 33322221  13


Q ss_pred             CccEEEeCCC----hhhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVG----GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+|+|+....    ...+..+.+.|+++|+++....
T Consensus       100 ~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          100 DIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             CEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            6999986543    2567788889999999887643

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.79  E-value=0.012  Score=46.52  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC---CeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF---DEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      .+++++|+|+ |++|.+++..+...|+ +|++..|+.++.+.+.++++.   ..+....   ++        ...+|+++
T Consensus       125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~---~l--------~~~aDiII  192 (281)
T 3o8q_A          125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE---QL--------KQSYDVII  192 (281)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---GC--------CSCEEEEE
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH---Hh--------cCCCCEEE
Confidence            5789999998 9999999999999997 999999999887666545543   1233222   11        13699999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      +|++.
T Consensus       193 naTp~  197 (281)
T 3o8q_A          193 NSTSA  197 (281)
T ss_dssp             ECSCC
T ss_pred             EcCcC
Confidence            99874

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.79  E-value=0.0081  Score=51.62  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH---H----HHHHHhcCCCe-e--eecCChhhHHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK---V----DLLKNKFGFDE-A--FNYKEEADLNAALKRY  145 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~---~----~~~~~~~g~~~-v--~~~~~~~~~~~~~~~~  145 (268)
                      ++++.++||+||+|++|..++..+...|+ +|+.+.++...   .    +.+. ..|... +  .|..+.+.+...+.+.
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~-~~g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHH-hcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            56789999999999999999998888899 59999887641   1    2233 445431 2  2444432444444443


Q ss_pred             CC-CCccEEEeCCC
Q 024411          146 FP-EGIDIYFENVG  158 (268)
Q Consensus       146 ~~-~~~d~v~d~~g  158 (268)
                      .. +.+|.+|.++|
T Consensus       302 ~~~g~ld~VIh~AG  315 (486)
T 2fr1_A          302 GDDVPLSAVFHAAA  315 (486)
T ss_dssp             CTTSCEEEEEECCC
T ss_pred             HhcCCCcEEEECCc
Confidence            22 26899999988

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.78  E-value=0.0085  Score=49.18  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHhcCCCeee--e-cCChhhHHHHHHHHCCCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV--DLLKNKFGFDEAF--N-YKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~--~~~~~~~g~~~v~--~-~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +.+|+|+||+|.+|..+++.+...|.+|+++++++++.  +.+. ......++  | ..+.+.+...+     .++|+|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~-~~~~v~~v~~D~l~d~~~l~~~~-----~~~d~Vi   78 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-AIPNVTLFQGPLLNNVPLMDTLF-----EGAHLAF   78 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH-TSTTEEEEESCCTTCHHHHHHHH-----TTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh-hcCCcEEEECCccCCHHHHHHHH-----hcCCEEE
Confidence            46799999999999999998888999999999876654  3333 22111222  3 33331232222     2489999


Q ss_pred             eCCChh------hHHhHHHhhhc-C--CEEEEEccc
Q 024411          155 ENVGGK------LLDAVLPNMKI-R--GRIAACGMI  181 (268)
Q Consensus       155 d~~g~~------~~~~~~~~l~~-~--G~~v~~g~~  181 (268)
                      .+++..      .....++.++. +  +++|.++..
T Consensus        79 ~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           79 INTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             ECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            766531      12344444444 3  588888764

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.78  E-value=0.0055  Score=52.35  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .-.+.+|.|+|. |.+|..+++.++.+|++|++.++++.+...+. ..|.. +.      ++.+.++     ..|+++.+
T Consensus       274 ~L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~-~~------~l~ell~-----~aDiVi~~  339 (494)
T 3d64_A          274 MIAGKIAVVAGY-GDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYR-VV------TMEYAAD-----KADIFVTA  339 (494)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCE-EC------CHHHHTT-----TCSEEEEC
T ss_pred             ccCCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCE-eC------CHHHHHh-----cCCEEEEC
Confidence            357889999997 99999999999999999999999887653444 44542 21      2222222     48999999


Q ss_pred             CChh-hH-HhHHHhhhcCCEEEEEccc
Q 024411          157 VGGK-LL-DAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       157 ~g~~-~~-~~~~~~l~~~G~~v~~g~~  181 (268)
                      ++.. .+ ...+..++++..++.++..
T Consensus       340 ~~t~~lI~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred             CCcccccCHHHHhhCCCCcEEEEcCCC
Confidence            8753 33 4677889999999988763

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.77  E-value=0.009  Score=48.09  Aligned_cols=95  Identities=9%  Similarity=0.093  Sum_probs=63.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCC--eeeecCChhhHHHHHHHHCCCCccEEEe-CC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPEGIDIYFE-NV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~v~d-~~  157 (268)
                      +||++|+  |.|..+..+++.+ +.+|+++..+++-.+.+++.++..  .-+..... +..+.+.+...+.||+|+- ..
T Consensus        92 rVLdIG~--G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~-Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           92 RITHLGG--GACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVD-DARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             EEEEESC--GGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEES-CHHHHHHTCCTTCEEEEEECCS
T ss_pred             EEEEEEC--CcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEEC-cHHHHHhhccCCCCCEEEECCC
Confidence            8999995  5578888888855 679999999999999998556532  11111111 3344444433347998874 32


Q ss_pred             C----------hhhHHhHHHhhhcCCEEEEEc
Q 024411          158 G----------GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       158 g----------~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .          .+.+..+.+.|+++|.++...
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            1          134778889999999987653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.76  E-value=0.0052  Score=52.29  Aligned_cols=91  Identities=21%  Similarity=0.177  Sum_probs=67.6

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .-.+.+|.|+|. |.+|..+++.++.+|++|++.++++.+...+. ..|.. +.      ++.+.++     ..|+++-+
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~-~~------~l~ell~-----~aDiVi~~  319 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFN-VV------TLDEIVD-----KGDFFITC  319 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCE-EC------CHHHHTT-----TCSEEEEC
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCE-ec------CHHHHHh-----cCCEEEEC
Confidence            357899999996 99999999999999999999999887654444 44542 21      2322222     48999998


Q ss_pred             CChh-hH-HhHHHhhhcCCEEEEEccc
Q 024411          157 VGGK-LL-DAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       157 ~g~~-~~-~~~~~~l~~~G~~v~~g~~  181 (268)
                      .+.. .+ ...++.++++..++.++..
T Consensus       320 ~~t~~lI~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             CChhhhcCHHHHhhcCCCcEEEEeCCC
Confidence            7663 33 3677889999999988763

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.75  E-value=0.0031  Score=51.93  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKL--LGCYVVGSAGSKD  115 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~--~g~~V~~~~~~~~  115 (268)
                      .+.+|||+||+|.+|..+++.+..  .|++|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            467899999999999999999888  8999999997553

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.75  E-value=0.0018  Score=53.15  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CC-Cee--eecCChhhHHHHHHHHCCCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--GF-DEA--FNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--g~-~~v--~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +.+|||+||+|.+|..+++.+...|.+|+++++++.+...+.+.+  +. ...  .|..+.+.+...+...   .+|+|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~d~vi   85 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF---QPEIVF   85 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH---CCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc---CCCEEE
Confidence            468999999999999999999999999999998765433222122  11 122  2444331333333322   589999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      .+++
T Consensus        86 h~A~   89 (357)
T 1rkx_A           86 HMAA   89 (357)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9988

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.75  E-value=0.0027  Score=51.77  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=66.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcC--------------CC--eeeecCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKFG--------------FD--EAFNYKE  134 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~g--------------~~--~v~~~~~  134 (268)
                      ....+.++++||-.|+ |. |..++.+++..|  .+|++++.++...+.+++.+.              ..  .++..+.
T Consensus        99 ~~l~~~~g~~VLDiG~-G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~  176 (336)
T 2b25_A           99 SMMDINPGDTVLEAGS-GS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HhcCCCCCCEEEEeCC-Cc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence            3346889999999996 44 888888888876  699999999988887763221              11  1222221


Q ss_pred             hhhHHHHHHHHCCCCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          135 EADLNAALKRYFPEGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       135 ~~~~~~~~~~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +..   .....+.||+|+-....  ..+..+.+.|+|+|+++....
T Consensus       177 ~-~~~---~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          177 S-GAT---EDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             T-CCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             H-Hcc---cccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            1 111   11112369988854443  467899999999999987644

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.75  E-value=0.0075  Score=52.33  Aligned_cols=82  Identities=10%  Similarity=0.012  Sum_probs=53.4

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCE-EEEE-eCCH-------------HH----HHHHHHhcCCCe---eeecCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCY-VVGS-AGSK-------------DK----VDLLKNKFGFDE---AFNYKE  134 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~-~~~~-------------~~----~~~~~~~~g~~~---v~~~~~  134 (268)
                      ++++.++||+||+|++|..+++.+...|++ |+.+ .++.             ++    .+.++ ..|...   ..|..+
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELA-DLGATATVVTCDLTD  326 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHH-HHTCEEEEEECCTTS
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHH-hcCCEEEEEECCCCC
Confidence            567899999999999999999988888996 6666 6652             22    23333 445532   224444


Q ss_pred             hhhHHHHHHHHCC-CCccEEEeCCCh
Q 024411          135 EADLNAALKRYFP-EGIDIYFENVGG  159 (268)
Q Consensus       135 ~~~~~~~~~~~~~-~~~d~v~d~~g~  159 (268)
                      .+.+...+.+... +.+|.+|.++|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence            3244444444332 379999999883

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.74  E-value=0.0062  Score=44.79  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe--eeecCChhhHHHHHHHHCCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE--AFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ..+.++++||=.|+  |.|..+..+++. +.+|++++.+++..+.+++.   .+...  .+. ...   . .+.....+.
T Consensus        18 ~~~~~~~~vLDiGc--G~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~---~-~l~~~~~~~   89 (185)
T 3mti_A           18 EVLDDESIVVDATM--GNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGH---E-NLDHYVREP   89 (185)
T ss_dssp             TTCCTTCEEEESCC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCG---G-GGGGTCCSC
T ss_pred             HhCCCCCEEEEEcC--CCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcH---H-HHHhhccCC
Confidence            35788999999986  348888888887 88999999999988777633   24322  222 211   1 121222347


Q ss_pred             ccEEEeCCCh----------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENVGG----------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ||+|+-..+.                ..+..+.+.|+|+|+++.+..
T Consensus        90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9988754221                235778899999999987754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.74  E-value=0.005  Score=46.84  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=66.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~  146 (268)
                      ....++.+||-+|+  |.|..+..+++..  +.+|++++.++...+.+++.   .+...   ++..+.. +....+....
T Consensus        54 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~  130 (223)
T 3duw_A           54 VQIQGARNILEIGT--LGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL-DSLQQIENEK  130 (223)
T ss_dssp             HHHHTCSEEEEECC--TTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH-HHHHHHHHTT
T ss_pred             HHhhCCCEEEEecC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH-HHHHHHHhcC
Confidence            34567889999985  4688888888887  57999999999888777632   35432   2222211 2222222211


Q ss_pred             CCCccEEEeCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYFENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.||+|+-....    ..+..+.+.|+|+|.++.-..
T Consensus       131 ~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          131 YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            1369988843322    457788899999998776543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.72  E-value=0.005  Score=46.90  Aligned_cols=102  Identities=12%  Similarity=0.108  Sum_probs=66.3

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCC--
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFP--  147 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~--  147 (268)
                      ....++.+||-+|+  |.|..++.+++.+  +.+|++++.+++..+.+++.+   +....+..... +..+.+.....  
T Consensus        60 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  136 (225)
T 3tr6_A           60 VKLMQAKKVIDIGT--FTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS-PAKDTLAELIHAG  136 (225)
T ss_dssp             HHHHTCSEEEEECC--TTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHTTT
T ss_pred             HHhhCCCEEEEeCC--cchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC-CHHHHHHHhhhcc
Confidence            34557789999985  4588888888876  569999999998887776332   44321111111 23233332221  


Q ss_pred             --CCccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          148 --EGIDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 --~~~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                        +.||+|+-....    ..+..+.+.|+|+|.++...
T Consensus       137 ~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          137 QAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence              479988843332    35778889999999988753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.72  E-value=0.0089  Score=47.40  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             cchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHH
Q 024411           61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNA  140 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  140 (268)
                      ||........|....---.+.+++|.|++..+|.-+++++...|++|++..+..                    . ++.+
T Consensus       146 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~-~L~~  204 (301)
T 1a4i_A          146 PCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------------A-HLDE  204 (301)
T ss_dssp             CHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-SHHH
T ss_pred             CchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------------c-cHHH
Confidence            333333334443332234789999999955789999999999999999886331                    1 3433


Q ss_pred             HHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          141 ALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .++     .+|+++.++|.+.+ --.+.++++..++.+|.
T Consensus       205 ~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi  238 (301)
T 1a4i_A          205 EVN-----KGDILVVATGQPEM-VKGEWIKPGAIVIDCGI  238 (301)
T ss_dssp             HHT-----TCSEEEECCCCTTC-BCGGGSCTTCEEEECCC
T ss_pred             Hhc-----cCCEEEECCCCccc-CCHHHcCCCcEEEEccC
Confidence            443     38999999997543 22344788888888876

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.72  E-value=0.002  Score=52.47  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++++.+.+.+. ..+... ..|..+.    +.+.+... ++|+|+.+++..
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~-~~~~~~~~~Dl~d~----~~~~~~~~-~~d~vih~a~~~   88 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA-YLEPECRVAEMLDH----AGLERALR-GLDGVIFSAGYY   88 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG-GGCCEEEECCTTCH----HHHHHHTT-TCSEEEEC----
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc-cCCeEEEEecCCCH----HHHHHHHc-CCCEEEECCccC
Confidence            7999999999999999999999999999998876544332 223322 1233332    23333332 599999998731


Q ss_pred             h----------------HHhHHHhhhc-C-CEEEEEcccc
Q 024411          161 L----------------LDAVLPNMKI-R-GRIAACGMIS  182 (268)
Q Consensus       161 ~----------------~~~~~~~l~~-~-G~~v~~g~~~  182 (268)
                      .                ....++.+.+ + +++|.++...
T Consensus        89 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~  128 (342)
T 2x4g_A           89 PSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAY  128 (342)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGG
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence            1                1233444443 3 6888887654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.69  E-value=0.003  Score=52.10  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCe-eeecC-ChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYK-EEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~-~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      ..+|||+||+|.+|..+++.+... |.+|+++++++++...+.+..+... ..|.. +.+.+.+.++     ++|+|+.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~-----~~d~Vih~   98 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK-----KCDVILPL   98 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH-----HCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc-----cCCEEEEc
Confidence            468999999999999999988887 8999999998766544331122221 22444 3313333333     49999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      ++.
T Consensus        99 A~~  101 (372)
T 3slg_A           99 VAI  101 (372)
T ss_dssp             BCC
T ss_pred             Ccc
Confidence            873

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.69  E-value=0.001  Score=54.06  Aligned_cols=78  Identities=8%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .+.+|||+||+|.+|..+++.+...|++|++++++......+.+.+.....  .|..+.+.+.+.+.+.   ++|+|+.+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~---~~D~vih~   95 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF---KPTHVVHS   95 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH---CCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc---CCCEEEEC
Confidence            456899999999999999999998999999999854322111102211112  2444432344444332   59999999


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            873

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.69  E-value=0.0077  Score=48.56  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=57.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCcc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK------DKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~------~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++      ++.+.+.+  ..+... ..|..+.+.+...+    . ++|
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~----~-~~d   79 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVL----K-QVD   79 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH----T-TCS
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHH----c-CCC
Confidence            4699999999999999999998999999999875      33333320  234322 23444431233322    2 499


Q ss_pred             EEEeCCChh---hHHhHHHhhhcC---CEEE
Q 024411          152 IYFENVGGK---LLDAVLPNMKIR---GRIA  176 (268)
Q Consensus       152 ~v~d~~g~~---~~~~~~~~l~~~---G~~v  176 (268)
                      +||.+++..   .....++.+...   +++|
T Consensus        80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           80 IVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             EEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            999999852   234455555443   3666

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.66  E-value=0.025  Score=47.44  Aligned_cols=95  Identities=20%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ..+|+|+|. |-+|+.+++.++..|.+|++++.++++.+.++ ..|.. ++..+.. + .+.++...-..+|.++-+++.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~-~~g~~-vi~GDat-~-~~~L~~agi~~A~~viv~~~~   78 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR-KFGMK-VFYGDAT-R-MDLLESAGAAKAEVLINAIDD   78 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH-HTTCC-CEESCTT-C-HHHHHHTTTTTCSEEEECCSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-hCCCe-EEEcCCC-C-HHHHHhcCCCccCEEEECCCC
Confidence            456999997 99999999999999999999999999999998 77765 3323321 1 223444322379999999986


Q ss_pred             h-h---HHhHHHhhhcCCEEEEEc
Q 024411          160 K-L---LDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       160 ~-~---~~~~~~~l~~~G~~v~~g  179 (268)
                      . .   +-...+.+.|..+++.-.
T Consensus        79 ~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           79 PQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hHHHHHHHHHHHHhCCCCeEEEEE
Confidence            3 2   234445555666666543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.64  E-value=0.0087  Score=49.25  Aligned_cols=105  Identities=19%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             hHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC----HHH---------HHHHHHhcCCCe
Q 024411           63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS----KDK---------VDLLKNKFGFDE  128 (268)
Q Consensus        63 ~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~----~~~---------~~~~~~~~g~~~  128 (268)
                      ..+..+.++.....--++.+|+|.|| |..|..+++++..+|+ +|++++++    .++         ..+++ +...  
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~-~~~~--  250 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR-ITNP--  250 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH-TSCT--
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH-hhhc--
Confidence            33444555543332346678999998 9999999999999999 89999987    433         33333 2221  


Q ss_pred             eeecCChhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          129 AFNYKEEADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                       . .... ++.+.++     ++|+++-+++. -.-++.++.++++..++.+.
T Consensus       251 -~-~~~~-~L~eav~-----~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalS  294 (388)
T 1vl6_A          251 -E-RLSG-DLETALE-----GADFFIGVSRGNILKPEWIKKMSRKPVIFALA  294 (388)
T ss_dssp             -T-CCCS-CHHHHHT-----TCSEEEECSCSSCSCHHHHTTSCSSCEEEECC
T ss_pred             -c-Cchh-hHHHHHc-----cCCEEEEeCCCCccCHHHHHhcCCCCEEEEcC
Confidence             1 1112 4555554     37999998875 33456777787766554443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.64  E-value=0.0087  Score=45.95  Aligned_cols=99  Identities=12%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCC-Ce--eeecCChhhHHHHHHHHCCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGF-DE--AFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~-~~--v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ..++||++||=.|+  |.|..+..+++..|.  +|++++.+++..+.+++.... ..  .+..+.. .. .... ...+.
T Consensus        73 l~ikpG~~VldlG~--G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~-~p-~~~~-~~~~~  147 (233)
T 4df3_A           73 LPVKEGDRILYLGI--ASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR-FP-EKYR-HLVEG  147 (233)
T ss_dssp             CCCCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT-CG-GGGT-TTCCC
T ss_pred             cCCCCCCEEEEecC--cCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc-Cc-cccc-cccce
Confidence            46899999999996  458889999998875  899999999988887733322 11  2222211 10 0110 11136


Q ss_pred             ccEEEeCCCh-----hhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYFENVGG-----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~d~~g~-----~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+++.....     ..+.++.+.|+|+|+++..
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            8988754432     2567888999999998875

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.64  E-value=0.012  Score=47.48  Aligned_cols=88  Identities=22%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+.+|.|+|. |.+|..+++.++..|.+|++.+++.++. .+. +.|... .      ++.+.+++     .|+++.++
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~g~~~-~------~l~ell~~-----aDvVvl~~  204 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDILDIRE-KAE-KINAKA-V------SLEELLKN-----SDVISLHV  204 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-HTTCEE-C------CHHHHHHH-----CSEEEECC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCcchh-HHH-hcCcee-c------CHHHHHhh-----CCEEEEec
Confidence            35789999997 9999999999999999999999877654 344 666532 1      33333433     79999888


Q ss_pred             Ch-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          158 GG-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .. +    .+ ...+..+++++.++.++.
T Consensus       205 P~~~~t~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          205 TVSKDAKPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CCCTTSCCSBCHHHHHHSCTTEEEEESSC
T ss_pred             cCChHHHHhhCHHHHhcCCCCCEEEECCC
Confidence            74 2    12 456778899888888866

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.62  E-value=0.0058  Score=49.83  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH----------HHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK----------DKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYF  146 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~----------~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~  146 (268)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.          +..+.+.+..+.. ..  .|..+.+.+.+.+.+. 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY-   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc-
Confidence            36899999999999999999988999999998642          2333333112321 22  2444431333333321 


Q ss_pred             CCCccEEEeCCCh
Q 024411          147 PEGIDIYFENVGG  159 (268)
Q Consensus       147 ~~~~d~v~d~~g~  159 (268)
                        ++|+|+.+++.
T Consensus        81 --~~d~vih~A~~   91 (348)
T 1ek6_A           81 --SFMAVIHFAGL   91 (348)
T ss_dssp             --CEEEEEECCSC
T ss_pred             --CCCEEEECCCC
Confidence              59999999873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.62  E-value=0.0082  Score=48.32  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHHHHCCCCc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      +.++++||-.|+  |.|..+..+++..+++|++++.++...+.+++.   .+..   ..+..+.. ++.     ...+.|
T Consensus       115 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-----~~~~~f  186 (312)
T 3vc1_A          115 AGPDDTLVDAGC--GRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTP-----FDKGAV  186 (312)
T ss_dssp             CCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-----CCTTCE
T ss_pred             CCCCCEEEEecC--CCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCC-----CCCCCE
Confidence            788999999996  458888889888899999999999988777632   3432   12222111 110     112379


Q ss_pred             cEEEeCC-----Ch-hhHHhHHHhhhcCCEEEEEccc
Q 024411          151 DIYFENV-----GG-KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       151 d~v~d~~-----g~-~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      |+|+...     +. ..+..+.+.|+|+|+++.....
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            9997532     22 5678899999999999887643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.62  E-value=0.0083  Score=45.80  Aligned_cols=96  Identities=13%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHhc---C-----CC--eeeecCChhhH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG-------CYVVGSAGSKDKVDLLKNKF---G-----FD--EAFNYKEEADL  138 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-------~~V~~~~~~~~~~~~~~~~~---g-----~~--~v~~~~~~~~~  138 (268)
                      .++++++||-+|+ |. |..+..+++..+       .+|++++.+++..+.+++.+   +     ..  .++..+.. . 
T Consensus        81 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~-  156 (227)
T 1r18_A           81 HLKPGARILDVGS-GS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR-K-  156 (227)
T ss_dssp             TCCTTCEEEEESC-TT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG-G-
T ss_pred             hCCCCCEEEEECC-Cc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcc-c-
Confidence            4788999999996 44 888888888776       49999999998877776322   1     11  22222211 1 


Q ss_pred             HHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          139 NAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                        .+..  .+.||+|+..... .....+.+.|+++|+++..-
T Consensus       157 --~~~~--~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          157 --GYPP--NAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             --CCGG--GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             --CCCc--CCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence              1111  1369999877665 55678899999999987753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.62  E-value=0.013  Score=47.86  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcC----CC-eee--ecCChhhHHHHHHHHCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD----KVDLLKNKFG----FD-EAF--NYKEEADLNAALKRYFPE  148 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~----~~~~~~~~~g----~~-~v~--~~~~~~~~~~~~~~~~~~  148 (268)
                      +.+|||+||+|.+|..+++.+...|.+|+++++++.    +.+.+.+.+.    .. ..+  |..+. +   .+.+... 
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~---~~~~~~~-  101 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL-D---DCNNACA-  101 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSH-H---HHHHHHT-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCH-H---HHHHHhc-
Confidence            468999999999999999999989999999997642    3333321221    11 222  33332 1   2222222 


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|+|+.+++.
T Consensus       102 ~~d~vih~A~~  112 (352)
T 1sb8_A          102 GVDYVLHQAAL  112 (352)
T ss_dssp             TCSEEEECCSC
T ss_pred             CCCEEEECCcc
Confidence            59999999883

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.62  E-value=0.011  Score=46.51  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=65.1

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHH
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN  139 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  139 (268)
                      +||........|.....--.+.+++|.|++..+|.-+++++...|++|++..+..                    . ++.
T Consensus       139 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~-~L~  197 (288)
T 1b0a_A          139 RPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------------K-NLR  197 (288)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------------S-CHH
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------------h-hHH
Confidence            3444444444554443345789999999966789999999999999999986432                    1 444


Q ss_pred             HHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          140 AALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+++     +|+++.++|.+.+ --.+.++++..++.+|.
T Consensus       198 ~~~~~-----ADIVI~Avg~p~l-I~~~~vk~GavVIDVgi  232 (288)
T 1b0a_A          198 HHVEN-----ADLLIVAVGKPGF-IPGDWIKEGAIVIDVGI  232 (288)
T ss_dssp             HHHHH-----CSEEEECSCCTTC-BCTTTSCTTCEEEECCC
T ss_pred             HHhcc-----CCEEEECCCCcCc-CCHHHcCCCcEEEEccC
Confidence            45544     8999999997533 22234688888888876

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.61  E-value=0.028  Score=42.28  Aligned_cols=88  Identities=13%  Similarity=0.065  Sum_probs=57.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC-----CCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG-----FDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +|+|+||+|.+|...+..+...|.+|++.++++++.+.+.+.++     .+  +..  . ++.+.+.     ++|+++.|
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~-----~~D~Vi~~   71 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDAS--ITG--M-KNEDAAE-----ACDIAVLT   71 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCC--EEE--E-EHHHHHH-----HCSEEEEC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCC--CCh--h-hHHHHHh-----cCCEEEEe
Confidence            58899977999999999888889999999999887766653333     11  111  1 3433443     38999999


Q ss_pred             CChhhHHhHHHhhh---cCCEEEEEc
Q 024411          157 VGGKLLDAVLPNMK---IRGRIAACG  179 (268)
Q Consensus       157 ~g~~~~~~~~~~l~---~~G~~v~~g  179 (268)
                      +........+..+.   ++..++.+.
T Consensus        72 ~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           72 IPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             SCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             CChhhHHHHHHHHHHHcCCCEEEEcC
Confidence            98754444433222   344455443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.61  E-value=0.0017  Score=52.27  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=61.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHhcCCC-eee---e-cCChhhHHHHHHHHCCCCcc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD-LLKNKFGFD-EAF---N-YKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~-~~~~~~g~~-~v~---~-~~~~~~~~~~~~~~~~~~~d  151 (268)
                      -.+.+++|+|++..+|..+++++...|++|++..++..+.. ... +++.. +..   . .+.. ++.+.+++     +|
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~-~la~~~~~~t~~~~t~~~-~L~e~l~~-----AD  247 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE-SLKLNKHHVEDLGEYSED-LLKKCSLD-----SD  247 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC-CSSCCCCEEEEEEECCHH-HHHHHHHH-----CS
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHH-HHhhhcccccccccccHh-HHHHHhcc-----CC
Confidence            36889999998446799999999999999998876633211 111 22221 111   0 1112 56666665     89


Q ss_pred             EEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+.++|.+.+----+.++++..++.+|.
T Consensus       248 IVIsAtg~p~~vI~~e~vk~GavVIDVgi  276 (320)
T 1edz_A          248 VVITGVPSENYKFPTEYIKEGAVCINFAC  276 (320)
T ss_dssp             EEEECCCCTTCCBCTTTSCTTEEEEECSS
T ss_pred             EEEECCCCCcceeCHHHcCCCeEEEEcCC
Confidence            99999997533122233678777778776

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.60  E-value=0.008  Score=48.39  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=57.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHH--HhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLK--NKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~--~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .+|||+||+|.+|..+++.+...|.+|+++++++. +.+.+.  +..+... ..|..+.+.+...+    . ++|+|+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~----~-~~d~vi~~   86 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELM----K-KVDVVISA   86 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHH----T-TCSEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHH----c-CCCEEEEC
Confidence            46999999999999999999999999999998764 333222  0334432 23444431333332    2 49999999


Q ss_pred             CChh---hHHhHHHhhhcC---CEEE
Q 024411          157 VGGK---LLDAVLPNMKIR---GRIA  176 (268)
Q Consensus       157 ~g~~---~~~~~~~~l~~~---G~~v  176 (268)
                      ++..   .....++.++..   ++++
T Consensus        87 a~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           87 LAFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             CCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             CchhhhHHHHHHHHHHHhcCCCCEEE
Confidence            9853   233444444443   3665

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.60  E-value=0.0076  Score=45.46  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccE
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      ..+.++.+||-.|+ | .|..+..+++. +.+|++++.++...+.++ +.+...  .+..+.. ++      ...+.+|+
T Consensus        42 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~d~~-~~------~~~~~~D~  110 (218)
T 3ou2_A           42 RAGNIRGDVLELAS-G-TGYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVEFRQQDLF-DW------TPDRQWDA  110 (218)
T ss_dssp             TTTTSCSEEEEESC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEEEEECCTT-SC------CCSSCEEE
T ss_pred             hcCCCCCeEEEECC-C-CCHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeEEEecccc-cC------CCCCceeE
Confidence            44778889999996 3 47777788777 889999999999999998 555332  2222211 11      12237999


Q ss_pred             EEeCCC---------hhhHHhHHHhhhcCCEEEEEcc
Q 024411          153 YFENVG---------GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       153 v~d~~g---------~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |+....         ...+..+.+.|+|+|+++....
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            986432         1346778889999999888754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.59  E-value=0.0028  Score=48.95  Aligned_cols=96  Identities=7%  Similarity=-0.031  Sum_probs=64.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----Ce-eeecCChhhHHHHHHHHCCCCcc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF----DE-AFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~----~~-v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ..+|.+||-+|+  |.|..+..+++..+.+|++++.+++..+.++ +...    .. ++..    +..........+.||
T Consensus        58 ~~~G~rVLdiG~--G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~----~a~~~~~~~~~~~FD  130 (236)
T 3orh_A           58 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKG----LWEDVAPTLPDGHFD  130 (236)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEES----CHHHHGGGSCTTCEE
T ss_pred             ccCCCeEEEECC--CccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEee----hHHhhcccccccCCc
Confidence            468899999996  4578888888877789999999999888887 4322    11 2221    222222222233799


Q ss_pred             EE-EeCCCh-----------hhHHhHHHhhhcCCEEEEEc
Q 024411          152 IY-FENVGG-----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       152 ~v-~d~~g~-----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+ +|+...           ..+..+.+.|+|||+++.+.
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            77 465432           23577899999999998764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.58  E-value=0.0015  Score=53.10  Aligned_cols=100  Identities=20%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV-DLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~-~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++.... +.+. .+....+  .|..+.+.+.+.+..   +.+|+|+.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~-~~~~~~~~~~Dl~d~~~~~~~~~~---~~~D~vih   95 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK-DHPNLTFVEGSIADHALVNQLIGD---LQPDAVVH   95 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-CCTTEEEEECCTTCHHHHHHHHHH---HCCSEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHh-hcCCceEEEEeCCCHHHHHHHHhc---cCCcEEEE
Confidence            346899999999999999999998999999999864321 1111 1111112  244433133333332   25999999


Q ss_pred             CCCh-hh--------------HHhHHHhhhc-C-CEEEEEcccc
Q 024411          156 NVGG-KL--------------LDAVLPNMKI-R-GRIAACGMIS  182 (268)
Q Consensus       156 ~~g~-~~--------------~~~~~~~l~~-~-G~~v~~g~~~  182 (268)
                      +++. ..              ....++.+.+ + +++|.++...
T Consensus        96 ~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~  139 (333)
T 2q1w_A           96 TAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL  139 (333)
T ss_dssp             CCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGG
T ss_pred             CceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcHH
Confidence            9874 11              1233344433 2 5888887644

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.57  E-value=0.024  Score=48.17  Aligned_cols=93  Identities=12%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +.+|+|+| +|++|..+++.+...|.+|++.+++.++.+.+.+.++....  .+..+.+++.+.+     .++|+|++|+
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l-----~~~DvVIn~a   76 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-----AKHDLVISLI   76 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHH-----TTSSEEEECC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHH-----cCCcEEEECC
Confidence            46899998 59999999998888999999999988877655423332112  2333321222222     2599999999


Q ss_pred             Ch-hhHHhHHHhhhcCCEEEEE
Q 024411          158 GG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       158 g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +. ........++.++..++..
T Consensus        77 ~~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           77 PYTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             C--CHHHHHHHHHHHTCEEEES
T ss_pred             ccccchHHHHHHHhCCCeEEEe
Confidence            86 2333344556666565544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.56  E-value=0.0063  Score=47.38  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~  114 (268)
                      +.+|+|.|+ |++|..+++.+...|. +++++++..
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            368999997 9999999999999998 888888765

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.56  E-value=0.0062  Score=48.33  Aligned_cols=95  Identities=15%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc----CC--------CeeeecCChhhHHHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF----GF--------DEAFNYKEEADLNAALKR  144 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~----g~--------~~v~~~~~~~~~~~~~~~  144 (268)
                      .++.+||.+|+  |.|..+..++++ +. +|++++.+++..+.+++.+    +.        +.-+..... +..+.+..
T Consensus        74 ~~~~~VLdiG~--G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~-D~~~~l~~  149 (281)
T 1mjf_A           74 PKPKRVLVIGG--GDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG-DGFEFIKN  149 (281)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES-CHHHHHHH
T ss_pred             CCCCeEEEEcC--CcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEEC-chHHHhcc
Confidence            45678999995  447777788877 65 9999999999998888555    21        111111111 33333443


Q ss_pred             HCCCCccEEE-eCCC----------hhhHHhHHHhhhcCCEEEEE
Q 024411          145 YFPEGIDIYF-ENVG----------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       145 ~~~~~~d~v~-d~~g----------~~~~~~~~~~l~~~G~~v~~  178 (268)
                        .+.||+|+ |...          .+.+..+.+.|+|+|.++..
T Consensus       150 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          150 --NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             --CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence              45799887 4431          23578889999999998875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.55  E-value=0.01  Score=46.67  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++++|+|+ |++|.+++..+...|.+|++..|+.++.+.+. +++. .+..+.+   +        . .+|++++|++.
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~-~~~~~~~---l--------~-~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGC-DCFMEPP---K--------S-AFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTC-EEESSCC---S--------S-CCSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCC-eEecHHH---h--------c-cCCEEEEcccC
Confidence            889999997 99999999999999999999999998887776 7774 2333322   1        1 58999998863


Q ss_pred             h-----hHHh--HHHhhhcCCEEEEEcc
Q 024411          160 K-----LLDA--VLPNMKIRGRIAACGM  180 (268)
Q Consensus       160 ~-----~~~~--~~~~l~~~G~~v~~g~  180 (268)
                      .     .+..  ....++++..++.+..
T Consensus       183 Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          183 SLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             CCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence            1     2221  1226777777766643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.54  E-value=0.0091  Score=47.12  Aligned_cols=100  Identities=10%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc----CCCeeeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF----GFDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      ....+.++++||-.|+ | .|..+..+++..  +.+|++++.+++..+.+++.+    |...+- .... ++.+    ..
T Consensus       104 ~~~~~~~~~~VLD~G~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~-~~~~-d~~~----~~  175 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGV-G-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSRS-DIAD----FI  175 (275)
T ss_dssp             --CCCCTTCEEEEECC-T-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EECS-CTTT----CC
T ss_pred             HHcCCCCcCEEEEecC-C-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEE-EEEC-chhc----cC
Confidence            4456789999999986 3 577888888874  579999999999888777433    433221 1111 1111    12


Q ss_pred             C-CCccEEEeCCCh--hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 P-EGIDIYFENVGG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~-~~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.+|+|+-....  ..+..+.+.|+|+|+++....
T Consensus       176 ~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          176 SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            2 379999875553  568889999999999887644

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.53  E-value=0.011  Score=48.08  Aligned_cols=74  Identities=18%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH--H---HHHHHHHhcCCCee--eecCChhhHHHHHHHHCCCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK--D---KVDLLKNKFGFDEA--FNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~--~---~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +|||+||+|.+|..+++.+...|.+|++++++.  .   ..+.+. ..+....  .|..+.+.+.+.+..   ..+|+|+
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~-~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d~vi   78 (347)
T 1orr_A            3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITK---YMPDSCF   78 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHH---HCCSEEE
T ss_pred             EEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc-cCCceEEEEcCCCCHHHHHHHHhc---cCCCEEE
Confidence            699999999999999999999999999998632  1   122232 2221222  244443133333332   1599999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .+++.
T Consensus        79 h~A~~   83 (347)
T 1orr_A           79 HLAGQ   83 (347)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99884

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.53  E-value=0.006  Score=46.65  Aligned_cols=99  Identities=12%  Similarity=0.052  Sum_probs=66.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-eeeecCChhhHHHHHHHHCCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--D-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ....+.++.+||-.|+ | .|..+..+++.. .+|++++.++...+.+++.+..  . .++..+.. .   .+.  ..+.
T Consensus        64 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~-~---~~~--~~~~  134 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGT-G-IGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGT-L---GYE--EEKP  134 (231)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGG-G---CCG--GGCC
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcc-c---ccc--cCCC
Confidence            4446788999999996 4 388888888764 8999999999988888744332  1 22222211 1   011  1237


Q ss_pred             ccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+....- .....+.+.|+|+|+++..-.
T Consensus       135 fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          135 YDRVVVWATAPTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCcHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9999876554 344678899999999887643

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.52  E-value=0.0063  Score=48.30  Aligned_cols=66  Identities=12%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      +.++..+|||+||+|.+|..+++.+...|.+|++++++.               .|..+.+.+.+.+++.   ++|+|+.
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~Dl~d~~~~~~~~~~~---~~d~vih   69 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEK---KPNVVIN   69 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHH---CCSEEEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------CCCCCHHHHHHHHHhc---CCCEEEE
Confidence            346678999999999999999999998999999998751               1222221333333322   5889998


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      +++.
T Consensus        70 ~A~~   73 (292)
T 1vl0_A           70 CAAH   73 (292)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8873

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.52  E-value=0.0069  Score=47.52  Aligned_cols=97  Identities=13%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLL---GCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~---g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ++++.+||=+|+  |.|..+..+++..   |++|++++.+++.++.+++.+   +...-+..... +    +.+...+.+
T Consensus        68 ~~~~~~vLDlGc--GtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~-D----~~~~~~~~~  140 (261)
T 4gek_A           68 VQPGTQVYDLGC--SLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-D----IRDIAIENA  140 (261)
T ss_dssp             CCTTCEEEEETC--TTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-C----TTTCCCCSE
T ss_pred             CCCCCEEEEEeC--CCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec-c----ccccccccc
Confidence            789999999996  4577788888764   679999999999888887433   33211111111 1    111222368


Q ss_pred             cEEEeCCC-----h----hhHHhHHHhhhcCCEEEEEcc
Q 024411          151 DIYFENVG-----G----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       151 d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |+++-...     .    ..+..+.+.|+|||+++....
T Consensus       141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            88765322     1    247888999999999987644

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.51  E-value=0.011  Score=47.60  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=64.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC------CeeeecCChhhHHHHHHHHCCCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF------DEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+..+||++|+  |.|..+..++++.+ .+|++++.+++..+.+++.+..      +.-+..... +..+.+.. ..+.|
T Consensus       107 ~~~~~VLdIG~--G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-D~~~~l~~-~~~~f  182 (314)
T 2b2c_A          107 PDPKRVLIIGG--GDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLKN-HKNEF  182 (314)
T ss_dssp             SSCCEEEEESC--TTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHHH-CTTCE
T ss_pred             CCCCEEEEEcC--CcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC-hHHHHHHh-cCCCc
Confidence            35578999995  45777888887654 5999999999999888854432      111222222 34444443 33479


Q ss_pred             cEEEeCC-C----------hhhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIYFENV-G----------GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~d~~-g----------~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+|+-.. .          ...+..+.+.|+|+|.++.-.
T Consensus       183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            9887432 1          245678889999999988753

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=96.50  E-value=0.011  Score=49.14  Aligned_cols=39  Identities=15%  Similarity=0.084  Sum_probs=31.8

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ...+.+|||+||+|.+|..++..+...|.+|+++++...
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            356789999999999999999999889999999987643

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.50  E-value=0.002  Score=50.73  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +++|||+||+|++|..+++.+...|++|+++++++.+..    ..+.. ...|..+.+.+.+.+    . ++|++++++|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~----~-~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMV----A-GCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHH----T-TCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHH----c-CCCEEEECCC
Confidence            468999999999999999999999999999998754322    01111 123444331222222    2 5999999987


Q ss_pred             h---hhH-----------HhHHHhhhc--CCEEEEEccccc
Q 024411          159 G---KLL-----------DAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       159 ~---~~~-----------~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      .   ..+           ....+.+..  .+++|.+++...
T Consensus        74 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~  114 (267)
T 3rft_A           74 ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT  114 (267)
T ss_dssp             CCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHH
Confidence            3   111           123333333  368988876543

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.48  E-value=0.0056  Score=50.42  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=44.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHhc-------CCC-ee--eecCChhhHHHHHHHHCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV--DLLKNKF-------GFD-EA--FNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~--~~~~~~~-------g~~-~v--~~~~~~~~~~~~~~~~~~~  148 (268)
                      .+|||+||+|.+|..+++.+...|.+|+++++++.+.  +.+. .+       +.. ..  .|..+.+.+.+.+...   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   77 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVD-HIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV---   77 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHH-HHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence            5799999999999999999988999999999876532  2222 11       111 11  2333331333333322   


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|+|+.+++.
T Consensus        78 ~~d~vih~A~~   88 (372)
T 1db3_A           78 QPDEVYNLGAM   88 (372)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            58999998873

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.47  E-value=0.0097  Score=47.07  Aligned_cols=60  Identities=10%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++.         +.      |..+.+.+.+.+.+.   ++|+|+.+++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------~~------D~~d~~~~~~~~~~~---~~d~vi~~a~~   66 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------LL------DITNISQVQQVVQEI---RPHIIIHCAAY   66 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------TS------CTTCHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------cc------CCCCHHHHHHHHHhc---CCCEEEECCcc
Confidence            79999999999999999998889999999972         11      222221334344332   58999988873

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.46  E-value=0.0058  Score=49.82  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .++.+|||+||+|.+|..+++.+...|.+|+++++++.+       .+... ..|..+.+.+.+.+.     ++|+|+.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~-----~~d~vih~   84 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIM-----GVSAVLHL   84 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHT-----TCSEEEEC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHh-----CCCEEEEC
Confidence            456789999999999999999999999999999987543       12222 234444312322222     59999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      ++.
T Consensus        85 A~~   87 (347)
T 4id9_A           85 GAF   87 (347)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            863

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.44  E-value=0.0067  Score=49.03  Aligned_cols=101  Identities=19%  Similarity=0.236  Sum_probs=66.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ....++++++||-+|+ |. |..+..+++..+  .+|++++.+++..+.+++.   .|...+ ..... ++.+...  ..
T Consensus        69 ~~l~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~~-d~~~~~~--~~  142 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVCG-DGYYGVP--EF  142 (317)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGGGCCG--GG
T ss_pred             HhcCCCCcCEEEEecC-Cc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEEC-Chhhccc--cC
Confidence            4456889999999996 44 888888888754  4799999999988877633   244322 11111 1111111  12


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.+|+|+....- .....+.+.|+|+|+++..-
T Consensus       143 ~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             CCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            379999876654 33367788999999987753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.44  E-value=0.033  Score=44.42  Aligned_cols=85  Identities=13%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|.|+|+ |.+|...+..+...|.+|++.++++++.+.+. +.|...   ..   ++.+.+.     .+|+|+.|+.. .
T Consensus         7 ~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~---~~~~~~~-----~~D~vi~~v~~~~   73 (299)
T 1vpd_A            7 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAET---AS---TAKAIAE-----QCDVIITMLPNSP   73 (299)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE---CS---SHHHHHH-----HCSEEEECCSSHH
T ss_pred             eEEEECc-hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCee---cC---CHHHHHh-----CCCEEEEECCCHH
Confidence            6999996 99999999988888999999999998888877 555421   11   3333333     27899999884 4


Q ss_pred             hHHhHH-------HhhhcCCEEEEEc
Q 024411          161 LLDAVL-------PNMKIRGRIAACG  179 (268)
Q Consensus       161 ~~~~~~-------~~l~~~G~~v~~g  179 (268)
                      .+...+       ..++++..++.+.
T Consensus        74 ~~~~~~~~~~~l~~~l~~~~~vv~~s   99 (299)
T 1vpd_A           74 HVKEVALGENGIIEGAKPGTVLIDMS   99 (299)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             HHHHHHhCcchHhhcCCCCCEEEECC
Confidence            444433       4555666666553

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.44  E-value=0.21  Score=40.54  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             cEEEEecCcchHHHHHHHHHH-H-cCCEEEE-EeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAK-L-LGCYVVG-SAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~-~-~g~~V~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -+|.|+|+ |.+|...++.++ . .++++++ .++++++.+.+.+++|...++  .   ++.+.+.   ...+|+|+.|+
T Consensus         9 ~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~--~---~~~~~l~---~~~~D~V~i~t   79 (346)
T 3cea_A            9 LRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTY--T---NYKDMID---TENIDAIFIVA   79 (346)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEE--S---CHHHHHT---TSCCSEEEECS
T ss_pred             ceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCccc--C---CHHHHhc---CCCCCEEEEeC
Confidence            57999997 999998888776 4 3667665 466677766555367765443  2   3332221   12699999999


Q ss_pred             Ch-hhHHhHHHhhhcCCEEEEEc
Q 024411          158 GG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       158 g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .. .....+..+++.+-. |.+.
T Consensus        80 p~~~h~~~~~~al~~G~~-v~~e  101 (346)
T 3cea_A           80 PTPFHPEMTIYAMNAGLN-VFCE  101 (346)
T ss_dssp             CGGGHHHHHHHHHHTTCE-EEEC
T ss_pred             ChHhHHHHHHHHHHCCCE-EEEc
Confidence            97 677788888887544 4443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.43  E-value=0.0028  Score=51.66  Aligned_cols=72  Identities=17%  Similarity=0.085  Sum_probs=46.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCC-hhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKE-EADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|.+|..+++.+... |.+|++++++..+.+.+.+..+... ..|..+ .+.+.+.+.     ++|+|+.+++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~~d~vih~A~   76 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK-----KCDVVLPLVA   76 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH-----HCSEEEECBC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc-----CCCEEEEccc
Confidence            6999999999999999988887 8999999988765433220111111 123332 102333332     4899999877

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.43  E-value=0.0057  Score=46.64  Aligned_cols=96  Identities=19%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---C-----CCe--eeecCChhhHHHHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKF---G-----FDE--AFNYKEEADLNAALK  143 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~---g-----~~~--v~~~~~~~~~~~~~~  143 (268)
                      .++++++||-.|+ | .|..+..+++..|  .+|++++.++...+.+++.+   +     ...  ++..+.    .... 
T Consensus        74 ~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~----~~~~-  146 (226)
T 1i1n_A           74 QLHEGAKALDVGS-G-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG----RMGY-  146 (226)
T ss_dssp             TSCTTCEEEEETC-T-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG----GGCC-
T ss_pred             hCCCCCEEEEEcC-C-cCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc----ccCc-
Confidence            3788999999996 4 4888888888876  59999999998887776322   2     111  222111    1000 


Q ss_pred             HHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          144 RYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                       ...+.||+|+..... ..+..+.+.|+|+|+++..-
T Consensus       147 -~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          147 -AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             -GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             -ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence             012369999876654 56688899999999988763

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.42  E-value=0.0098  Score=46.20  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHH
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALK  143 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~  143 (268)
                      ++.....+.++.+||-+|+  |.|..+..+++..+.+|++++.++...+.+++.   .+...   .+..+.. ++.    
T Consensus        37 ~l~~l~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~----  109 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGC--GTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD-NLP----  109 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETC--TTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCS----
T ss_pred             HHHHHhcCCCCCeEEEeCC--CCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh-hCC----
Confidence            3434446788999999996  458889999998888999999999888776632   23321   2222111 110    


Q ss_pred             HHCCCCccEEEeC-----CCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          144 RYFPEGIDIYFEN-----VGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       144 ~~~~~~~d~v~d~-----~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                       ...+.||+|+..     .+. ..+..+.+.|+|+|+++...
T Consensus       110 -~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          110 -FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             -SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence             112379999642     222 56788899999999988775

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.41  E-value=0.009  Score=48.49  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++++|||+||+|.+|..++..+...|++|+++.++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4578999999999999999999899999999888765

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.41  E-value=0.032  Score=44.26  Aligned_cols=86  Identities=14%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  159 (268)
                      .+|.|+|. |.+|...++.+...|.+|++.++++++.+.+. +.|....   .   ++.+.+.+     .|+|+-|+.. 
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~---~~~~~~~~-----aDvvi~~vp~~   68 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAERA---A---TPCEVVES-----CPVTFAMLADP   68 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEEC---S---SHHHHHHH-----CSEEEECCSSH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCeec---C---CHHHHHhc-----CCEEEEEcCCH
Confidence            46889997 99999999999999999999999999888887 5554211   1   33333332     6888888774 


Q ss_pred             hhHHhHH-------HhhhcCCEEEEEc
Q 024411          160 KLLDAVL-------PNMKIRGRIAACG  179 (268)
Q Consensus       160 ~~~~~~~-------~~l~~~G~~v~~g  179 (268)
                      ..+...+       ..++++..++..+
T Consensus        69 ~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           69 AAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             HHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             HHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            3443333       4455555555553

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.41  E-value=0.037  Score=41.90  Aligned_cols=76  Identities=9%  Similarity=-0.053  Sum_probs=55.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +|+|+|+ |.+|..+++.+...|.+|+++++++++.+.+.+..+.. ++..+.. + ...+++..-..+|+++-+++...
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~-~i~gd~~-~-~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT-IIHGDGS-H-KEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE-EEESCTT-S-HHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe-EEEcCCC-C-HHHHHhcCcccCCEEEEecCCcH
Confidence            4889997 99999999999999999999999999888765355553 3333321 1 23344443337999999998743

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.41  E-value=0.0084  Score=45.72  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             CCcEEEEecC----------------cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHH
Q 024411           79 HGECVFISAA----------------SGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAAL  142 (268)
Q Consensus        79 ~~~~vlI~ga----------------~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  142 (268)
                      .|.++||+||                +|++|.++++.+...|++|+.+.++.. .+.   ..+. .+++.....++.+.+
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~~---~~g~-~~~dv~~~~~~~~~v   81 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LPT---PPFV-KRVDVMTALEMEAAV   81 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CCC---CTTE-EEEECCSHHHHHHHH
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-ccc---CCCC-eEEccCcHHHHHHHH
Confidence            5789999999                589999999999999999999876431 110   0111 344554422444444


Q ss_pred             HHHCCCCccEEEeCCCh
Q 024411          143 KRYFPEGIDIYFENVGG  159 (268)
Q Consensus       143 ~~~~~~~~d~v~d~~g~  159 (268)
                      .+.. +.+|+++.++|-
T Consensus        82 ~~~~-~~~Dili~~Aav   97 (226)
T 1u7z_A           82 NASV-QQQNIFIGCAAV   97 (226)
T ss_dssp             HHHG-GGCSEEEECCBC
T ss_pred             HHhc-CCCCEEEECCcc
Confidence            4432 369999999884

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.40  E-value=0.011  Score=48.01  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=64.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+.+|.|+|. |.+|..+++.++.+|.+|++.+++..+ +.+. +.|...    .   ++.+.++     ..|+|+.++
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~----~---~l~ell~-----~aDvV~l~~  227 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPIISP-EVSA-SFGVQQ----L---PLEEIWP-----LCDFITVHT  227 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-HTTCEE----C---CHHHHGG-----GCSEEEECC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCcee----C---CHHHHHh-----cCCEEEEec
Confidence            35789999996 999999999999999999999987655 3444 666532    1   2332232     389999887


Q ss_pred             Ch-hh----H-HhHHHhhhcCCEEEEEcc
Q 024411          158 GG-KL----L-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~~----~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .. +.    + ...+..+++++.++.++.
T Consensus       228 P~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             CCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            64 21    2 356778899998888876

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.40  E-value=0.0032  Score=51.66  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhc-CCCeeeecCChhhHHHHHHHH-CCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKF-GFDEAFNYKEEADLNAALKRY-FPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~~~-~~~~~d~v~d~  156 (268)
                      +.+|||+||+|.+|..+++.+...| .+|+++.+++.... .. .+ +.....|..+. +....+.+. ..+++|+|+.+
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~-~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FV-NLVDLNIADYMDKE-DFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-GG-GTTTSCCSEEEEHH-HHHHHHHTTCCCSSCCEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-hh-cccCceEeeecCcH-HHHHHHHhhcccCCCCEEEEC
Confidence            4679999999999999999999899 89999987654321 11 12 11111233322 222222211 11269999999


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      ++.
T Consensus       123 A~~  125 (357)
T 2x6t_A          123 GAC  125 (357)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            873

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.39  E-value=0.024  Score=46.16  Aligned_cols=87  Identities=18%  Similarity=0.256  Sum_probs=63.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.+++.++ +.+. ++|..    ..   ++.+.+++     .|+++.++.
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~----~~---~l~~~l~~-----aDvVil~vp  213 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-ELNAE----FK---PLEDLLRE-----SDFVVLAVP  213 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HHCCE----EC---CHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-hcCcc----cC---CHHHHHhh-----CCEEEECCC
Confidence            4678999997 999999999999999999999988766 5554 55642    11   33333443     799998887


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . .    .+ ...+..++++..++.++.
T Consensus       214 ~~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          214 LTRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             CCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             CChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            5 2    12 345677888888877764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.024  Score=43.51  Aligned_cols=96  Identities=16%  Similarity=0.033  Sum_probs=64.2

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEE
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      ..+.++.+||=+|+  |.|..+..+++. |++|++++.+++..+.++ +.  ...+..    +....+.....+.||+|+
T Consensus        37 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~-~~--~~~~~~----d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           37 PYFKGCRRVLDIGC--GRGEFLELCKEE-GIESIGVDINEDMIKFCE-GK--FNVVKS----DAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             GGTTTCSCEEEETC--TTTHHHHHHHHH-TCCEEEECSCHHHHHHHH-TT--SEEECS----CHHHHHHTSCTTCBSEEE
T ss_pred             hhhcCCCeEEEEeC--CCCHHHHHHHhC-CCcEEEEECCHHHHHHHH-hh--cceeec----cHHHHhhhcCCCCeeEEE
Confidence            34678899999986  346666666665 889999999999988888 43  222222    333223222334799998


Q ss_pred             eCC-----C----hhhHHhHHHhhhcCCEEEEEcc
Q 024411          155 ENV-----G----GKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       155 d~~-----g----~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ...     .    ...+..+.+.|+|+|+++....
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            532     2    1356788899999999887543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.38  E-value=0.0079  Score=45.91  Aligned_cols=95  Identities=8%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC-CCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~~~d~v~d  155 (268)
                      +.++.+||-.|+  |.|..+..+++. +++|++++.++...+.+++.......+..+..+.+    . .. .+.||+|+.
T Consensus        46 ~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~----~-~~~~~~fD~v~~  117 (226)
T 3m33_A           46 LTPQTRVLEAGC--GHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGEL----P-AGLGAPFGLIVS  117 (226)
T ss_dssp             CCTTCEEEEESC--TTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSC----C-TTCCCCEEEEEE
T ss_pred             CCCCCeEEEeCC--CCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhcc----C-CcCCCCEEEEEe
Confidence            467889999996  347777777776 88999999999999988833222223322210011    0 11 237999997


Q ss_pred             CCCh-hhHHhHHHhhhcCCEEEEEc
Q 024411          156 NVGG-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       156 ~~g~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .... ..+..+.+.|+|+|+++..+
T Consensus       118 ~~~~~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          118 RRGPTSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             ESCCSGGGGGHHHHEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHcCCCcEEEEeC
Confidence            7554 77889999999999998443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.36  E-value=0.0096  Score=45.60  Aligned_cols=99  Identities=14%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC-Cee--eecCChhhHHHHHHHHCCCCc
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF-DEA--FNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~-~~v--~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ..+.++++||-.|+ |. |..+..+++..| .+|++++.+++..+.+++.... ..+  +..+.. ... .... ..+.+
T Consensus        70 ~~~~~~~~VLDlGc-G~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~-~~~-~~~~-~~~~~  144 (230)
T 1fbn_A           70 MPIKRDSKILYLGA-SA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN-KPQ-EYAN-IVEKV  144 (230)
T ss_dssp             CCCCTTCEEEEESC-CS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT-CGG-GGTT-TSCCE
T ss_pred             cCCCCCCEEEEEcc-cC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCC-Ccc-cccc-cCccE
Confidence            45778999999996 44 888888998876 5999999999888777633221 222  211111 100 0000 11469


Q ss_pred             cEEEeCCCh----h-hHHhHHHhhhcCCEEEEE
Q 024411          151 DIYFENVGG----K-LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       151 d~v~d~~g~----~-~~~~~~~~l~~~G~~v~~  178 (268)
                      |+|+.....    . .+..+.+.|+|+|+++..
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999855432    2 377888899999998886

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.35  E-value=0.025  Score=46.32  Aligned_cols=88  Identities=22%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++.+|.+|++.+++. +.+.+. ..|...+    .  ++.+.+++     .|+|+-++.
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~-~~g~~~~----~--~l~ell~~-----aDiV~l~~P  224 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVLVWGREN-SKERAR-ADGFAVA----E--SKDALFEQ-----SDVLSVHLR  224 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSHH-HHHHHH-HTTCEEC----S--SHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEECCCC-CHHHHH-hcCceEe----C--CHHHHHhh-----CCEEEEecc
Confidence            4789999997 9999999999999999999999775 334444 5665321    1  44444544     799988775


Q ss_pred             h-hh-----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL-----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~-----~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.     -...+..++++..++.++.
T Consensus       225 lt~~t~~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          225 LNDETRSIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             CcHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            3 21     2366778899999998874

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.32  E-value=0.044  Score=42.37  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|.|.|++|.+|...++.+... +.++..+....+..+.+. ..+++.++|+..++...+.+......+.++|+.++|-
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~   79 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF   79 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-HTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-ccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence            5899999999999999998766 788887765444444443 3356777777765244444443333368888888874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=96.32  E-value=0.024  Score=51.74  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHH-HcCC-EEEEEeCCHH---H----HHHHHHhcCCCe---eeecCChhhHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAK-LLGC-YVVGSAGSKD---K----VDLLKNKFGFDE---AFNYKEEADLNAALKR  144 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~-~~g~-~V~~~~~~~~---~----~~~~~~~~g~~~---v~~~~~~~~~~~~~~~  144 (268)
                      +.++.++||+|++|++|..+++.+. ..|+ +|+.+.++..   +    .+.++ ..|...   ..|..+.++....+.+
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~G~~v~~~~~Dvsd~~~v~~~~~~  605 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLT-AYGAEVSLQACDVADRETLAKVLAS  605 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHH
Confidence            4678999999999999999998886 7999 5888888732   2    22333 446532   2344444245555554


Q ss_pred             HCCC-CccEEEeCCCh
Q 024411          145 YFPE-GIDIYFENVGG  159 (268)
Q Consensus       145 ~~~~-~~d~v~d~~g~  159 (268)
                      .... .+|.+++++|-
T Consensus       606 ~~~~~~id~lVnnAGv  621 (795)
T 3slk_A          606 IPDEHPLTAVVHAAGV  621 (795)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             HHHhCCCEEEEECCCc
Confidence            4333 78999999873

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.32  E-value=0.0076  Score=49.06  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC-----C-CeeeecCChhhHHHHHHHHCCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFG-----F-DEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g-----~-~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ..+..+||.+|+  |.|..+..++++.+ .+|++++.++...+.+++.+.     . +.-+..... +..+.+.....+.
T Consensus       118 ~~~~~~VLdIG~--G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIGG--GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-DGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEETC--SSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-CHHHHHHTSCTTC
T ss_pred             CCCCCEEEEECC--CccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC-CHHHHHHhccCCC
Confidence            356689999995  45777888888764 599999999998888874331     1 111111111 3333343322347


Q ss_pred             ccEEEe-CC---C-------hhhHHhHHHhhhcCCEEEEE
Q 024411          150 IDIYFE-NV---G-------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       150 ~d~v~d-~~---g-------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      ||+|+- ..   +       ...+..+.+.|+++|.++.-
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            998874 33   1       14567888999999998875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.31  E-value=0.016  Score=45.11  Aligned_cols=95  Identities=17%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--------------------Ce--eeecCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--------------------DE--AFNYKE  134 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--------------------~~--v~~~~~  134 (268)
                      ..++.+||..|+  |.|..+..+++. |++|++++.|+...+.++++.+.                    ..  .+..+-
T Consensus        66 ~~~~~~vLD~GC--G~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           66 GQSGLRVFFPLC--GKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TCCSCEEEETTC--TTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCCeEEEeCC--CCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            457889999997  347777777765 99999999999999888744431                    11  111111


Q ss_pred             hhhHHHHHHHHCCCCccEEEeCCC-----h----hhHHhHHHhhhcCCEEEEEc
Q 024411          135 EADLNAALKRYFPEGIDIYFENVG-----G----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       135 ~~~~~~~~~~~~~~~~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                      . ++    .....+.||+|++...     .    ..+..+.+.|+|+|+++++.
T Consensus       143 ~-~l----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          143 F-DL----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             T-TG----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-cC----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            1 11    1111147999997432     1    24667889999999986543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.31  E-value=0.0046  Score=51.27  Aligned_cols=73  Identities=19%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ..+|||+||+|.+|..+++.+...|++|+++++++.+..... ..+... ..|..+.+.+...+     .++|+|+.+++
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~~-----~~~d~Vih~A~  102 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED-MFCDEFHLVDLRVMENCLKVT-----EGVDHVFNLAA  102 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG-GTCSEEEECCTTSHHHHHHHH-----TTCSEEEECCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc-cCCceEEECCCCCHHHHHHHh-----CCCCEEEECce
Confidence            468999999999999999999889999999998755432211 112221 12333321222222     25999999987

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.31  E-value=0.004  Score=49.94  Aligned_cols=69  Identities=14%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|.+|..+++.+...|.+|+++++++.+..... ..+... ..|..+. +    +.+... + |+|+.+++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~d~-~----~~~~~~-~-d~vih~A~   71 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-NPSAELHVRDLKDY-S----WGAGIK-G-DVVFHFAA   71 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-CTTSEEECCCTTST-T----TTTTCC-C-SEEEECCS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-CCCceEEECccccH-H----HHhhcC-C-CEEEECCC
Confidence            6999999999999999999999999999998655332211 111111 1233322 1    222222 2 99999987

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.31  E-value=0.058  Score=44.99  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=73.7

Q ss_pred             ccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----------hcCC--
Q 024411           60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKN----------KFGF--  126 (268)
Q Consensus        60 l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~----------~~g~--  126 (268)
                      ........+..+.....+.++++||=+|+  |.|..++++++..++ +|++++.++...+.+++          .+|.  
T Consensus       154 YGEt~~~~i~~il~~l~l~~gd~VLDLGC--GtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~  231 (438)
T 3uwp_A          154 YGETSFDLVAQMIDEIKMTDDDLFVDLGS--GVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH  231 (438)
T ss_dssp             GGGTHHHHHHHHHHHHCCCTTCEEEEESC--TTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred             cCCCCHHHHHHHHHhcCCCCCCEEEEeCC--CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            33334444555556678999999999995  568999999998888 59999999875555542          2343  


Q ss_pred             Ce--eeecCCh-hhHHHHHHHHCCCCccEEEe-CC--Ch---hhHHhHHHhhhcCCEEEEEccc
Q 024411          127 DE--AFNYKEE-ADLNAALKRYFPEGIDIYFE-NV--GG---KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       127 ~~--v~~~~~~-~~~~~~~~~~~~~~~d~v~d-~~--g~---~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      ..  .+..+-. ..+...+     +.+|+|+- +.  ..   ..+....+.|+|||++|.....
T Consensus       232 ~rVefi~GD~~~lp~~d~~-----~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERI-----ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHH-----HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             CCeEEEECcccCCcccccc-----CCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence            22  2222221 0222111     14898874 22  21   3567788899999999987553

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.31  E-value=0.017  Score=45.34  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             cchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      ||....+...+.+..---.+.+++|.|++..+|..+++++...  |++|++..+...                     ++
T Consensus       139 PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~---------------------~L  197 (281)
T 2c2x_A          139 PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTR---------------------DL  197 (281)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCS---------------------CH
T ss_pred             CChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchh---------------------HH
Confidence            4444444444544332357899999998556899999999999  899998764321                     33


Q ss_pred             HHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEccc
Q 024411          139 NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      .+.++     .+|+++.++|.+.+ --.+.++++..++.+|..
T Consensus       198 ~~~~~-----~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          198 PALTR-----QADIVVAAVGVAHL-LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             HHHHT-----TCSEEEECSCCTTC-BCGGGSCTTCEEEECCEE
T ss_pred             HHHHh-----hCCEEEECCCCCcc-cCHHHcCCCcEEEEccCC
Confidence            33333     38999999997543 333447888888888763

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.31  E-value=0.009  Score=47.97  Aligned_cols=99  Identities=15%  Similarity=0.055  Sum_probs=63.6

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC-------CCeeeecCChhhHHHHHHHHCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFG-------FDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..++.+||++|+  |.|..+..+++..+ .+|++++.++...+.+++.+.       ...+ ..... +....+.....+
T Consensus        93 ~~~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~-D~~~~~~~~~~~  168 (304)
T 3bwc_A           93 HPKPERVLIIGG--GDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRA-TVRVG-DGLAFVRQTPDN  168 (304)
T ss_dssp             SSSCCEEEEEEC--TTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEES-CHHHHHHSSCTT
T ss_pred             CCCCCeEEEEcC--CCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEEC-cHHHHHHhccCC
Confidence            356789999995  45777788887654 599999999998888874331       1111 11111 333333321234


Q ss_pred             CccEEEe-CCC----------hhhHHhHHHhhhcCCEEEEEc
Q 024411          149 GIDIYFE-NVG----------GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       149 ~~d~v~d-~~g----------~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .||+|+- ...          .+.+..+.+.|+|+|.++...
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            7998874 321          245778899999999988764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.31  E-value=0.023  Score=45.20  Aligned_cols=97  Identities=10%  Similarity=0.001  Sum_probs=66.6

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHHHHCCCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+.++.+||-+|+  |.|..+..+++..|++|++++.++...+.+++.   .+..   ..+..+.. ++     ....+.
T Consensus        79 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~~~  150 (297)
T 2o57_A           79 VLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EI-----PCEDNS  150 (297)
T ss_dssp             CCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SC-----SSCTTC
T ss_pred             CCCCCCEEEEeCC--CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cC-----CCCCCC
Confidence            6788999999996  468888889988899999999999887777632   2332   12222111 11     011237


Q ss_pred             ccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYFENVG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+|+....     .  ..+..+.+.|+|+|+++....
T Consensus       151 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          151 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            999986432     1  457889999999999887754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.30  E-value=0.015  Score=45.54  Aligned_cols=99  Identities=13%  Similarity=0.053  Sum_probs=63.7

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCcc
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ....+.++.+||=+|+  |.|..+..+++. |++|++++.++...+.+++...... ..+..+. +.  .......+.||
T Consensus        39 ~~l~l~~g~~VLDlGc--GtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~-~~--~~~~~~~~~fD  112 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGA--STRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDI-TA--EIPKELAGHFD  112 (261)
T ss_dssp             HTTTCCTTCEEEEECT--TCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCT-TS--CCCGGGTTCCS
T ss_pred             HhcCCCCcCEEEEEeC--cchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhccceeeeeec-cc--ccccccCCCcc
Confidence            3446788999999996  457788888765 7899999999999999984443321 1222211 10  00001124799


Q ss_pred             EEEeCCC-----h----hhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVG-----G----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+-+..     .    ..+..+.+.+ |+|+++..
T Consensus       113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          113 FVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             EEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            9885432     1    2466777788 99998765

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.29  E-value=0.021  Score=59.01  Aligned_cols=82  Identities=13%  Similarity=0.054  Sum_probs=57.5

Q ss_pred             CCCcEEEEecCcch-HHHHHHHHHHHcCCEEEEEeCCHHH-----HHHHHHhcCCC--e----eeecCChhhHHHHHHHH
Q 024411           78 KHGECVFISAASGA-VGQLVGQFAKLLGCYVVGSAGSKDK-----VDLLKNKFGFD--E----AFNYKEEADLNAALKRY  145 (268)
Q Consensus        78 ~~~~~vlI~ga~g~-~G~~~i~l~~~~g~~V~~~~~~~~~-----~~~~~~~~g~~--~----v~~~~~~~~~~~~~~~~  145 (268)
                      -.++++||+||++| +|.++++.+...|++|++++++.++     .+.+.++++..  .    ..|..+.++....+.+.
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999 9999999999999999999987654     33333244321  1    23455442444444444


Q ss_pred             CC------CCccEEEeCCCh
Q 024411          146 FP------EGIDIYFENVGG  159 (268)
Q Consensus       146 ~~------~~~d~v~d~~g~  159 (268)
                      ..      |++|++++++|.
T Consensus      2214 ~~~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2214 GTEQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             TSCCEEEESSSEEEECCCCC
T ss_pred             HhhhhhhcCCCCEEEECCCc
Confidence            33      478999998874

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.27  E-value=0.0076  Score=48.40  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=63.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC-------CCeeeecCChhhHHHHHHHHCCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFG-------FDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..++.+||.+|+  |.|..+..++++.+ .+|++++.+++..+.+++.+.       ...+ ..... +..+.+.. ..+
T Consensus        93 ~~~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv-~v~~~-Da~~~l~~-~~~  167 (304)
T 2o07_A           93 HPNPRKVLIIGG--GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-TLHVG-DGFEFMKQ-NQD  167 (304)
T ss_dssp             SSSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEES-CHHHHHHT-CSS
T ss_pred             CCCCCEEEEECC--CchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEEC-cHHHHHhh-CCC
Confidence            346689999995  45777888887754 599999999998888874332       1111 11111 33333332 234


Q ss_pred             CccEEE-eCCC----------hhhHHhHHHhhhcCCEEEEEc
Q 024411          149 GIDIYF-ENVG----------GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       149 ~~d~v~-d~~g----------~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .||+|+ |...          .+.+..+.+.|+|+|.++.-.
T Consensus       168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            799887 4432          135788899999999988753

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.26  E-value=0.032  Score=41.79  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---------------C--eeeecCChhhH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF---------------D--EAFNYKEEADL  138 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~---------------~--~v~~~~~~~~~  138 (268)
                      .+.++.+||-.|+  |.|..+..+++. |++|++++.|+...+.++++.+.               .  ..+..+-. ++
T Consensus        19 ~~~~~~~vLD~GC--G~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l   94 (203)
T 1pjz_A           19 NVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-AL   94 (203)
T ss_dssp             CCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SS
T ss_pred             ccCCCCEEEEeCC--CCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc-cC
Confidence            4678899999986  347777777775 89999999999999888754331               1  12222211 11


Q ss_pred             HHHHHHHCCCCccEEEeCCC-----h----hhHHhHHHhhhcCCEEEEE
Q 024411          139 NAALKRYFPEGIDIYFENVG-----G----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      ...  .  .+.||+|++...     .    ..+..+.+.|+|+|+++.+
T Consensus        95 ~~~--~--~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           95 TAR--D--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             THH--H--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             Ccc--c--CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            110  0  025999997322     1    1457788999999994443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.24  E-value=0.016  Score=43.96  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCC--
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFP--  147 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~--  147 (268)
                      ....++.+||=+|+  +.|..++.+++.+  +.+|++++.++...+.+++   ..+....+..... +..+.+.....  
T Consensus        54 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~  130 (221)
T 3u81_A           54 IREYSPSLVLELGA--YCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKY  130 (221)
T ss_dssp             HHHHCCSEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGTTTTS
T ss_pred             HHhcCCCEEEEECC--CCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC-CHHHHHHHHHHhc
Confidence            34457789999985  4577888888865  6799999999998887764   2344321222221 33333333221  


Q ss_pred             --CCccEEEeCCChhh-------HHhHHHhhhcCCEEEEE
Q 024411          148 --EGIDIYFENVGGKL-------LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       148 --~~~d~v~d~~g~~~-------~~~~~~~l~~~G~~v~~  178 (268)
                        +.||+|+-......       +... +.|+|+|.++.-
T Consensus       131 ~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          131 DVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             CCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             CCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence              47998874433211       2222 789999988764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.23  E-value=0.013  Score=46.56  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC------CeeeecCChhhHHHHHHHHCCCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF------DEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .++.+||++|+  |.|..+..++++.+ .+|++++.+++..+.+++.+..      +.-+..... +..+.+... .+.+
T Consensus        77 ~~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~~-~~~f  152 (283)
T 2i7c_A           77 KEPKNVLVVGG--GDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLENV-TNTY  152 (283)
T ss_dssp             SSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHHHC-CSCE
T ss_pred             CCCCeEEEEeC--CcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEEC-ChHHHHHhC-CCCc
Confidence            45689999985  45777777777654 5999999999998888854432      111111111 333334332 4479


Q ss_pred             cEEEe-CCC----------hhhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIYFE-NVG----------GKLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~d-~~g----------~~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+|+- ...          .+.+..+.+.|+|+|.++...
T Consensus       153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            98874 321          134678889999999988763

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.22  E-value=0.021  Score=47.36  Aligned_cols=35  Identities=14%  Similarity=0.014  Sum_probs=30.9

Q ss_pred             cEEEEecCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Q 024411           81 ECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGSKD  115 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~-~~g~~V~~~~~~~~  115 (268)
                      -+|||+||+|.+|..+++.+. ..|++|++++++..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   38 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVG   38 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            379999999999999999888 89999999987643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.22  E-value=0.0098  Score=49.00  Aligned_cols=89  Identities=16%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCY-VVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~-V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+.+|.|+|. |.+|..+++.++.+|.+ |++.+++..+.+.+. ++|...+   .   ++.+.++     ..|+|+.++
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-~~g~~~~---~---~l~ell~-----~aDvV~l~~  229 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-KVGARRV---E---NIEELVA-----QADIVTVNA  229 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-HTTEEEC---S---SHHHHHH-----TCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-hcCcEec---C---CHHHHHh-----cCCEEEECC
Confidence            5789999997 99999999999999997 999997765555555 6664321   1   3333333     379999887


Q ss_pred             Ch-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          158 GG-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .. +    .+ ...+..+++++.++.++.
T Consensus       230 P~t~~t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          230 PLHAGTKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CCChHHHHHhCHHHHhhCCCCCEEEECCC
Confidence            64 2    12 346677888888888865

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.22  E-value=0.055  Score=43.59  Aligned_cols=90  Identities=10%  Similarity=0.062  Sum_probs=61.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+|.|+|. |.+|...++.++..|.  +|++.++++++.+.+. +.|.......+.. ++  .+     ..+|+|+-|+.
T Consensus        34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~~~~-~~--~~-----~~aDvVilavp  103 (314)
T 3ggo_A           34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIA-KV--ED-----FSPDFVMLSSP  103 (314)
T ss_dssp             SEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCTT-GG--GG-----GCCSEEEECSC
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcCCHH-HH--hh-----ccCCEEEEeCC
Confidence            57999996 9999999999999998  9999999999988888 7776321111111 10  11     24889998888


Q ss_pred             hhhH----HhHHHhhhcCCEEEEEcc
Q 024411          159 GKLL----DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~~~~----~~~~~~l~~~G~~v~~g~  180 (268)
                      ....    ......++++..++.++.
T Consensus       104 ~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          104 VRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             GGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             HHHHHHHHHHHhhccCCCcEEEECCC
Confidence            6433    334444556666655544

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.22  E-value=0.03  Score=44.49  Aligned_cols=63  Identities=6%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|||+||+|.+|..+++.+. .|.+|+++++++.       .    ...|..+.+.+.+.++..   ++|+|+.+++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------~----~~~D~~d~~~~~~~~~~~---~~d~vih~a~~   64 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------E----FCGDFSNPKGVAETVRKL---RPDVIVNAAAH   64 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------S----SCCCTTCHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------c----ccccCCCHHHHHHHHHhc---CCCEEEECccc
Confidence            58999999999999999888 7999999997641       1    112333321333333321   58999998873

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.20  E-value=0.011  Score=46.83  Aligned_cols=90  Identities=10%  Similarity=0.194  Sum_probs=62.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-  159 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  159 (268)
                      .+|||+|+ |.+|..++..+...|.+|+++++++.+.+.+. ..+.. .+..+-. ++.       -.++|+|+.+++. 
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~-~~~~D~~-d~~-------~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAE-PLLWPGE-EPS-------LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEE-EEESSSS-CCC-------CTTCCEEEECCCCB
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCe-EEEeccc-ccc-------cCCCCEEEECCCcc
Confidence            57999998 99999999999999999999999998877766 44443 2222222 211       2369999999874 


Q ss_pred             ----hhHHhHHHhhhc----CCEEEEEccc
Q 024411          160 ----KLLDAVLPNMKI----RGRIAACGMI  181 (268)
Q Consensus       160 ----~~~~~~~~~l~~----~G~~v~~g~~  181 (268)
                          ......++.++.    -.++|.++..
T Consensus        75 ~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~  104 (286)
T 3ius_A           75 SGGDPVLAALGDQIAARAAQFRWVGYLSTT  104 (286)
T ss_dssp             TTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred             ccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence                123444454443    2578877654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.20  E-value=0.027  Score=42.92  Aligned_cols=97  Identities=14%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCC-CeeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGF-DEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .++++.+||=.|+ |..|..++.+++..+.+|++++.++...+.+++.   .+. ..++..+.. .+    .....+.||
T Consensus        52 ~~~~~~~vLDlG~-G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~----~~~~~~~fD  125 (230)
T 3evz_A           52 FLRGGEVALEIGT-GHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-II----KGVVEGTFD  125 (230)
T ss_dssp             TCCSSCEEEEECC-TTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SS----TTTCCSCEE
T ss_pred             hcCCCCEEEEcCC-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hh----hhcccCcee
Confidence            4678999999986 4357777777777688999999999988777632   233 123322210 01    111124799


Q ss_pred             EEEeCCC--------------------------hhhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVG--------------------------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g--------------------------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+-...                          ...+..+.+.|+|+|+++.+
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            9984311                          23467778889999988775

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.19  E-value=0.0097  Score=47.64  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=48.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+|||+||+|.+|..+++.+...  |.+|+++++++.+.+...   +... ..|..+.+.+.+.+++.   ++|+|+.++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~~---~~d~vih~a   76 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN---SGPFEVVNALDFNQIEHLVEVH---KITDIYLMA   76 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH---SSCEEECCTTCHHHHHHHHHHT---TCCEEEECC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC---CCceEEecCCCHHHHHHHHhhc---CCCEEEECC
Confidence            56999999999999999888877  889999998765433222   2221 23444431333333321   599999998


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      +.
T Consensus        77 ~~   78 (312)
T 2yy7_A           77 AL   78 (312)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.19  E-value=0.053  Score=43.56  Aligned_cols=87  Identities=13%  Similarity=-0.007  Sum_probs=58.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      -.+|.|+|. |.+|...++.+...|.+|++.++++++.+.+. +.|....   .   +..+.+.+     .|+|+-|+..
T Consensus        21 m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~---~~~~~~~~-----aDvvi~~vp~   87 (310)
T 3doj_A           21 MMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-EHGASVC---E---SPAEVIKK-----CKYTIAMLSD   87 (310)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEEC---S---SHHHHHHH-----CSEEEECCSS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HCCCeEc---C---CHHHHHHh-----CCEEEEEcCC
Confidence            357999997 99999999999999999999999999888887 6665311   1   33333332     6777777764


Q ss_pred             -hhHHhHH-------HhhhcCCEEEEEc
Q 024411          160 -KLLDAVL-------PNMKIRGRIAACG  179 (268)
Q Consensus       160 -~~~~~~~-------~~l~~~G~~v~~g  179 (268)
                       ..+...+       ..++++..++..+
T Consensus        88 ~~~~~~v~~~~~~l~~~l~~g~~vv~~s  115 (310)
T 3doj_A           88 PCAALSVVFDKGGVLEQICEGKGYIDMS  115 (310)
T ss_dssp             HHHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             HHHHHHHHhCchhhhhccCCCCEEEECC
Confidence             3333332       3344455555543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.17  E-value=0.038  Score=43.05  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +|.|+|+ |.+|...+..+...|.+|.+.++++++.+.+.+++|...   +.   ++.+.+.     .+|+|+-|+....
T Consensus         5 ~i~iiG~-G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~---~~~~~~~-----~~D~Vi~~v~~~~   72 (259)
T 2ahr_A            5 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AM---SHQDLID-----QVDLVILGIKPQL   72 (259)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CS---SHHHHHH-----TCSEEEECSCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eC---CHHHHHh-----cCCEEEEEeCcHh
Confidence            6899996 999999888888888899999999888877764556531   11   3333332     3899999888766


Q ss_pred             HHhHHHhhhcCCEEEEE
Q 024411          162 LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       162 ~~~~~~~l~~~G~~v~~  178 (268)
                      ....+..++++..++..
T Consensus        73 ~~~v~~~l~~~~~vv~~   89 (259)
T 2ahr_A           73 FETVLKPLHFKQPIISM   89 (259)
T ss_dssp             HHHHHTTSCCCSCEEEC
T ss_pred             HHHHHHHhccCCEEEEe
Confidence            66666666655545544

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=96.17  E-value=0.056  Score=44.03  Aligned_cols=95  Identities=19%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHc-CCEEEEEe--CCHHHHHHHHHhcCCCeeeecCCh-------------hhHHHHHHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL-GCYVVGSA--GSKDKVDLLKNKFGFDEAFNYKEE-------------ADLNAALKR  144 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~--~~~~~~~~~~~~~g~~~v~~~~~~-------------~~~~~~~~~  144 (268)
                      .+|.|+|++|++|..++++.+.. +++|++++  ++.+.+....+++++..+.-.++.             +.+.+-+..
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~   83 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEA   83 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcC
Confidence            57999999999999999999887 46888773  444554443337888654322221             011222211


Q ss_pred             HCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          145 YFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                         ..+|+|+.+.-+ ..+.-.+..++.|-++.+.
T Consensus        84 ---~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLA  115 (376)
T 3a06_A           84 ---LKPDITMVAVSGFSGLRAVLASLEHSKRVCLA  115 (376)
T ss_dssp             ---HCCSEEEECCCSTTHHHHHHHHHHHCSEEEEC
T ss_pred             ---CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence               258999988766 7888888888888777764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.17  E-value=0.028  Score=43.96  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHH
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALK  143 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~  143 (268)
                      ++.....+.++.+||-+|+  |.|..+..+++..+.+|++++.++...+.+++.   .+..   ..+..+-. ++.    
T Consensus        37 ~l~~l~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~----  109 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGC--GTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD-DLP----  109 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETC--TTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC----
T ss_pred             HHHhcccCCCCCEEEEeCC--CCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh-hCC----
Confidence            3433345788999999996  358888888888566999999999988777632   2332   12222111 110    


Q ss_pred             HHCCCCccEEEeCC-----Ch-hhHHhHHHhhhcCCEEEEEcc
Q 024411          144 RYFPEGIDIYFENV-----GG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       144 ~~~~~~~d~v~d~~-----g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       ...+.||+|+...     +. ..+..+.+.|+|+|+++....
T Consensus       110 -~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          110 -FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             -CCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             -CCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence             1123799998533     22 467888899999999887653

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.16  E-value=0.023  Score=46.13  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.+++.++.+.+. +.+...+       ++.+.+.+     .|+++.++.
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~-------~l~e~l~~-----aDvVi~~vp  219 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-EFQAEFV-------STPELAAQ-----SDFIVVACS  219 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-TTTCEEC-------CHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-hcCceeC-------CHHHHHhh-----CCEEEEeCC
Confidence            4678999997 99999999999999999999998766555555 5554321       22223332     799998886


Q ss_pred             h-hh----H-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL----L-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~----~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . ..    + ...+..++++..++.++.
T Consensus       220 ~~~~t~~~i~~~~~~~mk~gailIn~sr  247 (330)
T 2gcg_A          220 LTPATEGLCNKDFFQKMKETAVFINISR  247 (330)
T ss_dssp             CCTTTTTCBSHHHHHHSCTTCEEEECSC
T ss_pred             CChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            4 21    2 345677888887777654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.15  E-value=0.0078  Score=46.93  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+ +++|+|+ |++|.+++..+...|+ +|++..|+.++.+.+.++++   .....   ++.+.+.     .+|++++++
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~---~~~~~---~~~~~~~-----~aDiVInat  174 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK---IFSLD---QLDEVVK-----KAKSLFNTT  174 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCE---EEEGG---GHHHHHH-----TCSEEEECS
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcc---cCCHH---HHHhhhc-----CCCEEEECC
Confidence            45 8999997 9999999999999998 99999999887665442222   12222   3333333     489999988


Q ss_pred             Chh---h-HHhHHHhhhcCCEEEEEc
Q 024411          158 GGK---L-LDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       158 g~~---~-~~~~~~~l~~~G~~v~~g  179 (268)
                      ...   . .......++++..++.+.
T Consensus       175 p~gm~p~~~~i~~~~l~~~~~V~Div  200 (253)
T 3u62_A          175 SVGMKGEELPVSDDSLKNLSLVYDVI  200 (253)
T ss_dssp             STTTTSCCCSCCHHHHTTCSEEEECS
T ss_pred             CCCCCCCCCCCCHHHhCcCCEEEEee
Confidence            521   0 111234566666666553

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=96.15  E-value=0.018  Score=46.68  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhcCCC-ee--eecCChhhHHHHHHHHCCCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS----KDKVDLLKNKFGFD-EA--FNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~----~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      +|||+||+|.+|..+++.+...|++|+++++.    .+..+.+.+..+.. ..  .|..+.+.+.+.+..   .++|+|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~D~vi   78 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD---HAIDTVI   78 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH---TTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhc---cCCCEEE
Confidence            58999999999999999999999999998742    22233333111321 22  244443133333332   1599999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .++|.
T Consensus        79 h~A~~   83 (338)
T 1udb_A           79 HFAGL   83 (338)
T ss_dssp             ECCSC
T ss_pred             ECCcc
Confidence            99873

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.13  E-value=0.015  Score=47.65  Aligned_cols=89  Identities=24%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .|.+|.|+|. |.+|..+++.++.+|.+|++.++++...+.+. +.|...+    .  ++.+.++     ..|+|+-++.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~----~--~l~ell~-----~aDvV~l~~P  229 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-ETGAKFV----E--DLNEMLP-----KCDVIVINMP  229 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-HHCCEEC----S--CHHHHGG-----GCSEEEECSC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-hCCCeEc----C--CHHHHHh-----cCCEEEECCC
Confidence            5789999997 99999999999999999999998765555555 6665322    1  3333333     3799988776


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...+..|+++..++.++.
T Consensus       230 lt~~t~~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          230 LTEKTRGMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             CCTTTTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             CCHHHHHhhcHHHHhcCCCCCEEEECcC
Confidence            3 1    12 466788888888888865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.11  E-value=0.015  Score=45.95  Aligned_cols=93  Identities=10%  Similarity=0.046  Sum_probs=62.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhc-----CC--C--eeeecCChhhHHHHHHHHCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKF-----GF--D--EAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~-----g~--~--~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ++.+||++|+  |.|..+..++++.+ .+|++++.+++-.+.+++.+     +.  .  .++..+    ..+.+.. ..+
T Consensus        75 ~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D----~~~~l~~-~~~  147 (275)
T 1iy9_A           75 NPEHVLVVGG--GDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD----GFMHIAK-SEN  147 (275)
T ss_dssp             SCCEEEEESC--TTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC----SHHHHHT-CCS
T ss_pred             CCCEEEEECC--chHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc----HHHHHhh-CCC
Confidence            5678999995  44777778887766 59999999999888887444     22  1  233222    2223332 234


Q ss_pred             CccEEEe-CCC----------hhhHHhHHHhhhcCCEEEEE
Q 024411          149 GIDIYFE-NVG----------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       149 ~~d~v~d-~~g----------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      .||+|+- ...          .+.+..+.+.|+|+|.++..
T Consensus       148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            7998874 322          24678899999999998876

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=96.11  E-value=0.0083  Score=49.64  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      .+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999999999999999999999999999998754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.11  E-value=0.027  Score=45.49  Aligned_cols=88  Identities=10%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG-SKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.++ +.++ ..+. ++|...    ..  ++.+.+.+     .|+|+-++
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-~~g~~~----~~--~l~ell~~-----aDvVil~~  210 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASS-SDEA-SYQATF----HD--SLDSLLSV-----SQFFSLNA  210 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHH-HHTCEE----CS--SHHHHHHH-----CSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhh-hcCcEE----cC--CHHHHHhh-----CCEEEEec
Confidence            5788999997 99999999999999999999998 6655 3444 566531    11  33333433     79999887


Q ss_pred             Ch-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          158 GG-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .. +    .+ ...+..++++..++.++.
T Consensus       211 p~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          211 PSTPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             cCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            74 2    12 345677888888888865

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.09  E-value=0.01  Score=48.62  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCH--HHHHHHHHhc--CCC-ee--eecCChhhHHHHHHHHCCCCccEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSK--DKVDLLKNKF--GFD-EA--FNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~--~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      +|||+||+|.+|..+++.+... |.+|++++++.  .+.+.+. ++  +.. ..  .|..+.+.+.+.+.+   .++|+|
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d~v   77 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS-DISESNRYNFEHADICDSAEITRIFEQ---YQPDAV   77 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGT-TTTTCTTEEEEECCTTCHHHHHHHHHH---HCCSEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhh-hhhcCCCeEEEECCCCCHHHHHHHHhh---cCCCEE
Confidence            5899999999999998888777 78999998753  1222222 22  111 12  244433133333332   269999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +.+++.
T Consensus        78 ih~A~~   83 (361)
T 1kew_A           78 MHLAAE   83 (361)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            999874

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.09  E-value=0.0096  Score=47.59  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHH--HHHHHHhcCCCeeeecCChhhHHHHHHHHCCC----CccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDK--VDLLKNKFGFDEAFNYKEEADLNAALKRYFPE----GIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~----~~d~v~  154 (268)
                      +|||+||+|.+|..+++.+...| .+|+++.+++..  ...+. ...  ...|..+. +   .+.....+    ++|+|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~--~~~d~~~~-~---~~~~~~~~~~~~~~d~vi   73 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV-DLN--IADYMDKE-D---FLIQIMAGEEFGDVEAIF   73 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH-TSC--CSEEEEHH-H---HHHHHHTTCCCSSCCEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcC-cce--eccccccH-H---HHHHHHhccccCCCcEEE
Confidence            38999999999999999998889 899999876543  22222 221  12233322 2   22232223    699999


Q ss_pred             eCCCh
Q 024411          155 ENVGG  159 (268)
Q Consensus       155 d~~g~  159 (268)
                      .+++.
T Consensus        74 ~~a~~   78 (310)
T 1eq2_A           74 HEGAC   78 (310)
T ss_dssp             ECCSC
T ss_pred             ECccc
Confidence            99873

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.07  E-value=0.048  Score=44.02  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ..+|.|+|. |.+|...++.+...|.+|++.++++++.+.+. +.|....   .   ++.+.+.     ..|+|+-|+..
T Consensus        31 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~---~~~e~~~-----~aDvVi~~vp~   97 (320)
T 4dll_A           31 ARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLA-ALGATIH---E---QARAAAR-----DADIVVSMLEN   97 (320)
T ss_dssp             CSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCEEE---S---SHHHHHT-----TCSEEEECCSS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-HCCCEee---C---CHHHHHh-----cCCEEEEECCC
Confidence            358999997 99999999999999999999999999988887 5554211   1   2222222     36788877774


Q ss_pred             -hhHHhHH------HhhhcCCEEEEEcc
Q 024411          160 -KLLDAVL------PNMKIRGRIAACGM  180 (268)
Q Consensus       160 -~~~~~~~------~~l~~~G~~v~~g~  180 (268)
                       ..+...+      ..++++..++..+.
T Consensus        98 ~~~~~~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A           98 GAVVQDVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             HHHHHHHHTTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHHcchhHHhhCCCCCEEEecCC
Confidence             3333333      34455555555543

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.07  E-value=0.022  Score=44.57  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      ++||+||+|.+|..++..+.. |.+|+++++++...   .   +  ...|..+.+.+.+.++..   .+|+++.++|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~---~---~--~~~Dl~~~~~~~~~~~~~---~~d~vi~~a~~   67 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ---G---G--YKLDLTDFPRLEDFIIKK---RPDVIINAAAM   67 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT---T---C--EECCTTSHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC---C---C--ceeccCCHHHHHHHHHhc---CCCEEEECCcc
Confidence            489999999999999988874 89999999875311   1   1  233444432343334332   58999999874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.07  E-value=0.014  Score=47.44  Aligned_cols=88  Identities=10%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .|.+|.|+|. |.+|..+++.++.+|.+|++.+++..+.+... .+|...    .   ++.+.+++     .|+++-++.
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~----~---~l~ell~~-----aDvV~l~~P  209 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQ----V---ACSELFAS-----SDFILLALP  209 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-HHTEEE----C---CHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-hcCcee----C---CHHHHHhh-----CCEEEEcCC
Confidence            4789999997 99999999999999999999998764444444 555421    1   33334443     788888776


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...+..++++..++.++.
T Consensus       210 ~t~~t~~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          210 LNADTLHLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CCHHHHHHhCHHHHhhCCCCcEEEECCC
Confidence            3 1    12 366778888888888865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.07  E-value=0.089  Score=41.62  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=36.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~   44 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAK   44 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            57999997 99999999999999999999999998877665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.06  E-value=0.016  Score=48.08  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=62.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.++.|+|. |.+|..+++.++.+|.+|++.+++..+.+.+. ++|...+   .   ++.+.++     ..|+|+.++.
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-~~G~~~~---~---~l~ell~-----~aDvV~l~~P  256 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELNLTWH---A---TREDMYP-----VCDVVTLNCP  256 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHTCEEC---S---SHHHHGG-----GCSEEEECSC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-hcCceec---C---CHHHHHh-----cCCEEEEecC
Confidence            5789999997 99999999999999999999988765545555 5665321   1   2332222     3788888776


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...+..|+++..++.++.
T Consensus       257 lt~~t~~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          257 LHPETEHMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             CchHHHHHhhHHHHhhCCCCCEEEECCC
Confidence            3 1    12 355677888888887764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.06  E-value=0.016  Score=46.83  Aligned_cols=97  Identities=16%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------CeeeecCChhhHHHHHHHHCCCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGF------DEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .++.+||.+|+  |.|..+..++++. +.+|++++.+++..+.+++.+..      +.-+..... +..+.+.. ..+.|
T Consensus       115 ~~~~~VLdiG~--G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~-D~~~~l~~-~~~~f  190 (321)
T 2pt6_A          115 KEPKNVLVVGG--GDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLEN-VTNTY  190 (321)
T ss_dssp             SSCCEEEEEEC--TTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHHH-CCSCE
T ss_pred             CCCCEEEEEcC--CccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEc-cHHHHHhh-cCCCc
Confidence            35678999985  4477778888775 46999999999999888854432      111111111 33333333 23479


Q ss_pred             cEEE-eCC---C-------hhhHHhHHHhhhcCCEEEEE
Q 024411          151 DIYF-ENV---G-------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       151 d~v~-d~~---g-------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      |+|+ |..   +       .+.+..+.+.|+|+|.++..
T Consensus       191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            9887 442   1       24467888999999998875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.06  E-value=0.012  Score=44.19  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=62.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ..++.+||-+|+  +.|..+..+++..  +.+|+.++.++...+.+++.   .+....+..... +..+.+.. ..+ ||
T Consensus        54 ~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~-~~~-fD  128 (210)
T 3c3p_A           54 IKQPQLVVVPGD--GLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG-DPLGIAAG-QRD-ID  128 (210)
T ss_dssp             HHCCSEEEEESC--GGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES-CHHHHHTT-CCS-EE
T ss_pred             hhCCCEEEEEcC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe-cHHHHhcc-CCC-CC
Confidence            346788999985  5688888888876  57999999999888777632   233211111111 22222222 234 99


Q ss_pred             EEEeCCC---h-hhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVG---G-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g---~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+-...   . ..+..+.+.|+|+|.++..
T Consensus       129 ~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          129 ILFMDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            8873222   1 4578888999999998764

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.04  E-value=0.37  Score=38.86  Aligned_cols=88  Identities=10%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             EEEEecCcchHHHHH-HHHHHHcCCEEEEE-eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLV-GQFAKLLGCYVVGS-AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~-i~l~~~~g~~V~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|.|+|+ |.+|... +..+...+.+++++ ++++++.+.+.+++|...++  .   ++.+.+.   ...+|+|+.++..
T Consensus         2 ~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~---~~~~~l~---~~~~D~V~i~tp~   72 (332)
T 2glx_A            2 RWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--T---SVEELVG---DPDVDAVYVSTTN   72 (332)
T ss_dssp             EEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--S---CHHHHHT---CTTCCEEEECSCG
T ss_pred             eEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc--C---CHHHHhc---CCCCCEEEEeCCh
Confidence            5889997 9999875 54444477887754 56666666555467764332  1   3333232   1269999999997


Q ss_pred             -hhHHhHHHhhhcCCEEEEEc
Q 024411          160 -KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       160 -~~~~~~~~~l~~~G~~v~~g  179 (268)
                       .....+..++..+-. |.+.
T Consensus        73 ~~h~~~~~~al~~Gk~-v~~e   92 (332)
T 2glx_A           73 ELHREQTLAAIRAGKH-VLCE   92 (332)
T ss_dssp             GGHHHHHHHHHHTTCE-EEEC
T ss_pred             hHhHHHHHHHHHCCCe-EEEe
Confidence             566777777777544 4443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.03  E-value=0.022  Score=46.65  Aligned_cols=90  Identities=22%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~-~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      -.+.+|.|+|. |.+|..+++.++ ..|.+|++.+++.++.+.+. ++|...+    .  ++.+.+++     .|+|+.+
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~--~l~ell~~-----aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-ALGAERV----D--SLEELARR-----SDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHTCEEC----S--SHHHHHHH-----CSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-hcCcEEe----C--CHHHHhcc-----CCEEEEe
Confidence            45789999997 999999999999 99999999998766555555 5565321    1  33333433     7899888


Q ss_pred             CCh-hh----H-HhHHHhhhcCCEEEEEcc
Q 024411          157 VGG-KL----L-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g~-~~----~-~~~~~~l~~~G~~v~~g~  180 (268)
                      +.. ..    + ...+..++++..++.++.
T Consensus       228 vp~~~~t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          228 VPYMKLTHHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             CCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             CCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            764 21    2 245667778777777654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.00  E-value=0.041  Score=47.09  Aligned_cols=40  Identities=10%  Similarity=0.076  Sum_probs=34.2

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHc---CCEEEEEeCCHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLL---GCYVVGSAGSKDK  116 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~---g~~V~~~~~~~~~  116 (268)
                      ...+.+|||+||+|.+|..+++.+...   |.+|++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            346789999999999999988888777   8999999987654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.99  E-value=0.011  Score=47.75  Aligned_cols=73  Identities=14%  Similarity=0.123  Sum_probs=48.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG--FDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g--~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+|||+||+|.+|..+++.+...|.+|++++++.....  . .+.  ... ..|..+.+.+.+.+.+   .++|+|+.++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~-~~~~~~~~~~~D~~~~~~~~~~~~~---~~~d~vih~a   75 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE--D-AITEGAKFYNGDLRDKAFLRDVFTQ---ENIEAVMHFA   75 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG--G-GSCTTSEEEECCTTCHHHHHHHHHH---SCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch--h-hcCCCcEEEECCCCCHHHHHHHHhh---cCCCEEEECC
Confidence            36999999999999999999999999999987643221  1 221  211 1244333133333332   2699999998


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      +.
T Consensus        76 ~~   77 (330)
T 2c20_A           76 AD   77 (330)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.97  E-value=0.026  Score=45.90  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=58.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.+++.++ +.+. ++|...    .   ++.+.+++     .|+++.++.
T Consensus       145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~----~---~l~e~l~~-----aDiVil~vp  209 (333)
T 2d0i_A          145 YGKKVGILGM-GAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-ELKARY----M---DIDELLEK-----SDIVILALP  209 (333)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-HHTEEE----C---CHHHHHHH-----CSEEEECCC
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCcee----c---CHHHHHhh-----CCEEEEcCC
Confidence            4678999997 999999999999999999999988765 4444 455321    1   23333332     788888776


Q ss_pred             hh-----hHH-hHHHhhhcCCEEEEEc
Q 024411          159 GK-----LLD-AVLPNMKIRGRIAACG  179 (268)
Q Consensus       159 ~~-----~~~-~~~~~l~~~G~~v~~g  179 (268)
                      ..     .+. ..+..++++ .++.++
T Consensus       210 ~~~~t~~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          210 LTRDTYHIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             CCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred             CChHHHHHhCHHHHhhCCCC-EEEECC
Confidence            42     222 345667777 666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	1e-34
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	2e-31
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-19
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	2e-16
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	3e-16
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	1e-15
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-15
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-14
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	5e-14
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	8e-14
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	1e-13
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	1e-13
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-12
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-12
d1vj1a1	166	b.35.1.2 (A:-1-124,A:312-351) Putative zinc-bindin	4e-12
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	4e-11
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	2e-10
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-08
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	2e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	3e-06
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-04
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	0.001

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (303), Expect = 1e-34
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 53  LSYYTGILGMPGMTAYVGFYEVCSPKHG--ECVFISAASGAVGQLVGQFAKLLGCYVVGS 110
           LSY+ G +GMPG+T+ +G  E      G  + + +S A+GA G L GQ   LLGC  V  
Sbjct: 2   LSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVG 61

Query: 111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMK 170
                +  L        +A    +  ++   L+   P G+D+YF+NVGG + + V+  M 
Sbjct: 62  ICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMN 121

Query: 171 IRGRIAACGMISQYNLD----KPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP 226
               I  CG ISQYN D     P           + +  E F VL++   +   +  +  
Sbjct: 122 ENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQ 181

Query: 227 HIKEGK 232
             KEGK
Sbjct: 182 WFKEGK 187

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score =  113 bits (282), Expect = 2e-31
 Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 51  VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS 110
           +PLS   G +GMPG+TAY G  EVC  K GE V +SAA+GAVG +VGQ AKL GC VVG+
Sbjct: 1   LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA 60

Query: 111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMK 170
           AGS +K+  LK        FNYK    L  ALK+  P+G D YF+NVGG+ L+ VL  MK
Sbjct: 61  AGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMK 119

Query: 171 IRGRIAACGMISQYN-LDKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHI 228
             G+IA CG IS YN +D+     +   ++ K+LR+EGFIV      +  K L  ++  +
Sbjct: 120 DFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWV 179

Query: 229 KEG 231
            EG
Sbjct: 180 LEG 182

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 82.0 bits (201), Expect = 1e-19
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 18/186 (9%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFI-SAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           + +  +TAY+          G+  FI +  + AVG+   Q  KLL    +     +  +D
Sbjct: 9   ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68

Query: 119 LL---KNKFGFDEAFNYKEE-----ADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMK 170
            +     + G  +     +              +       +    VGGK    +   + 
Sbjct: 69  EVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLN 128

Query: 171 IRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKF----LEMIIP 226
             G +   G +S   +            + K     GF V +      +     L  II 
Sbjct: 129 NNGLMLTYGGMSFQPVT-----IPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIA 183

Query: 227 HIKEGK 232
             +EGK
Sbjct: 184 WYEEGK 189

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.2 bits (178), Expect = 2e-16
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 2/174 (1%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
            G+  +TA+    EV     GE V I +A+G VG      AK +    + +    D    
Sbjct: 6   FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDAKRE 64

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
           + ++ G +   + +     +  L+     G+D+   ++ G+ +   +  +   GR    G
Sbjct: 65  MLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELG 124

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKL 233
               Y  D   G+  L    S  +      +      Y + L+ I+ H+ +GKL
Sbjct: 125 KKDVYA-DASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKL 177

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 72.2 bits (176), Expect = 3e-16
 Identities = 45/189 (23%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 59  ILGMPGMTAYVGFYEV----CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
           I+G  G TA +    +      P+ GE + ++ ASG VG         LG  VV  +G +
Sbjct: 8   IIGTAGFTAMLCVMALEDAGVRPQDGE-IVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66

Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGR 174
              + LK   G        E A+     K    +      + VG K+L  VL  M   G 
Sbjct: 67  STHEYLK-SLGASRVLPRDEFAESRPLEK----QVWAGAIDTVGDKVLAKVLAQMNYGGC 121

Query: 175 IAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLV 234
           +AACG+   + L        +M  + + +R++G    D     P+        +      
Sbjct: 122 VAACGLAGGFTLP-----TTVMPFILRNVRLQGV---DSVMTPPERRAQAWQRL------ 167

Query: 235 YVEDMAEGL 243
            V D+ E  
Sbjct: 168 -VADLPESF 175

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 70.8 bits (172), Expect = 1e-15
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 61  GMPGMTAYVGFY---EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
           G  G TA +  +   +         V ++ A+G VG +        G  VV S G+++  
Sbjct: 2   GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61

Query: 118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
           D L  + G  E  + ++  D    LK    +      + VGGK L ++L  ++  G +A 
Sbjct: 62  DYL-KQLGASEVISREDVYD--GTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAV 118

Query: 178 CGMISQYNLDKPEGVHNLMYLVSKRLRMEGF 208
            G+     +        +   + + + + G 
Sbjct: 119 SGLTGGGEVPAT-----VYPFILRGVSLLGI 144

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 4/173 (2%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             + G+T Y    +    K  E     AA+G VG +  Q+AK LG  ++G+ G+  K   
Sbjct: 9   SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 68

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
              K G  +  NY+EE  +    +    + + + +++VG    +  L  ++ RG + + G
Sbjct: 69  AL-KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFG 127

Query: 180 MISQYNLDKPEGVHNLMY-LVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
             S        G+ N    L   R  ++G+I         +    +   I  G
Sbjct: 128 NSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTR--EELTEASNELFSLIASG 178

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 5e-14
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 7/175 (4%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           +LG    T Y         + G    +    G    ++          ++G   +KDK  
Sbjct: 8   LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA 67

Query: 119 LLKNKFGFDEAFNYKEE-ADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
             K +FG  E  N ++    +   L      G+D  FE +G   +         +G   +
Sbjct: 68  RAK-EFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVS 126

Query: 178 CGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK 232
             ++      +         +  +  +   F         PK +          K
Sbjct: 127 V-VVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSE----YMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 66.1 bits (160), Expect = 5e-14
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 10/183 (5%)

Query: 51  VPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS 110
           VP+    G LG    T                     A GAVG      AK+ G  ++ +
Sbjct: 1   VPIEL-LGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIA 58

Query: 111 AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-LLDAVLPNM 169
               +    L  + G     N K + D  AA+K     G++   E+ G   +L   +  +
Sbjct: 59  VDIVESRLELAKQLGATHVINSKTQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 170 KIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIK 229
            I G+IA  G        +     ++  L+     + G +         KF+  ++   +
Sbjct: 118 GILGKIAVVGAPQLGTTAQ----FDVNDLLLGGKTILGVVEGSGS--PKKFIPELVRLYQ 171

Query: 230 EGK 232
           +GK
Sbjct: 172 QGK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 65.8 bits (159), Expect = 8e-14
 Identities = 21/174 (12%), Positives = 45/174 (25%), Gaps = 5/174 (2%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           ++G    T Y    +V     G    +    G    ++          ++G   +KDK  
Sbjct: 8   LIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA 67

Query: 119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAAC 178
             K     +       +  +   L      G+D  FE +G         +        + 
Sbjct: 68  KAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSV 127

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK 232
            +         + +     L+      +G I           +  ++      K
Sbjct: 128 IV---GVPPDSQNLSMNPMLLLSGRTWKGAIFGG--FKSKDSVPKLVADFMAKK 176

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 59  ILGMPGMTAYVGFY---EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
            +G  G TA +  +   E         V ++ A+G VG L        G  V  S G   
Sbjct: 8   AIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA 67

Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
           + D L+     +     ++   +   ++    +      + VGG+ L  VL  M+  G +
Sbjct: 68  EHDYLRVLGAKEV-LARED--VMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAV 124

Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKRLRMEG 207
           A  G+     +        +   + + + + G
Sbjct: 125 AVSGLTGGAEVPT-----TVHPFILRGVSLLG 151

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 2   QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQH---TDVPLSYYTG 58
             + G  VA+V++S+N  F  G +V   +GW  + +     L K+           +   
Sbjct: 61  AVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHV 120

Query: 59  ILGMPGMT-AYVGFYEVCSPKHGECVFIS 86
             G   M  A++          G+ V  +
Sbjct: 121 TKGFENMPAAFIEMLNG--ANLGKAVVTA 147

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 8/175 (4%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           +LG    T +         + G    +          V          ++    + DK +
Sbjct: 8   LLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE 67

Query: 119 LLKNKFGFDEAFNYKEEADL-NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
             K  FG  +  N  + ++  +  L +    G+D   E VG   +        ++G   +
Sbjct: 68  KAK-VFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVS 126

Query: 178 CGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK 232
             +      D       L+         +G +           +  ++    + K
Sbjct: 127 VLVGWTDLHDVATRPIQLI----AGRTWKGSMFGGFK--GKDGVPKMVKAYLDKK 175

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 9/175 (5%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           +    G TAY  F E      G+ V I  A G +G      A+ LG   V          
Sbjct: 8   MAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRL 66

Query: 119 LLKNKFGFDEAFNYKE---EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGR 174
            L  + G D   N +E   E    A +      G D   E  G  + L      ++  G 
Sbjct: 67  KLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGF 126

Query: 175 IAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIK 229
            +  G+        P       +LV K    +G  V D  H + K + +   + +
Sbjct: 127 YSVAGVAVP---QDPVPFKVYEWLVLKNATFKGIWVSDTSH-FVKTVSITSRNYQ 177

>d1vj1a1 b.35.1.2 (A:-1-124,A:312-351) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 166

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (146), Expect = 4e-12
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 1   MQPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKIQ--HTDVPLSYYT 57
            Q   G G+  V +S++ +  KGD V      W+  +++    L K+     D      T
Sbjct: 73  AQVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGLKVKET 132

Query: 58  GILGMPGMTAYVGFYEVCSPKHGECVFISAAS 89
              G+  M               + V IS  S
Sbjct: 133 VAKGLENMGVAFQSMMTGGNVGKQIVCISEDS 164

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           +G+P  TAY         K GE V +  ASG VG    Q A+  G  ++G+AG+++   +
Sbjct: 9   IGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI 68

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
              + G  E FN++E   ++   K    +GIDI  E +    L   L  +   GR+   G
Sbjct: 69  -VLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG 127

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY-HLYPKFLEMIIPHIKEG 231
                 +       N    ++K   + G  +       + ++   +   ++ G
Sbjct: 128 SRGTIEI-------NPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIG 173

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 59  ILGMPGMTAY---VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
           I+G  G TA    +   +         + ++ ASG VG         LG  VV  +G + 
Sbjct: 8   IIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67

Query: 116 KVDLLKN 122
             + LK+
Sbjct: 68  THEYLKS 74

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 12/177 (6%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           ++G    T Y           G    +    G VG       K  G   +   G+     
Sbjct: 7   LIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKF 65

Query: 119 LLKNKFGFDEAFNYKEEAD-LNAALKRYFPEGIDIYFENVGGK--LLDAVLPNMKIRGRI 175
               + G  E  N K+    +   +      G+D   E  G    +++A+       G  
Sbjct: 66  PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVT 125

Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK 232
              G+         E +     L+     ++G +         + +  ++    + K
Sbjct: 126 VVLGL-----ASPNERLPLDPLLLLTGRSLKGSVFGGF---KGEEVSRLVDDYMKKK 174

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 16/175 (9%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
             +  +TAY+   +    + GE V + AA+GA+G    Q A+ +G  V+ +A   +K+ L
Sbjct: 9   FPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 67

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
                  + A   +         +R    G       V GK ++  L  +   GR+   G
Sbjct: 68  PLALGAEEAATYAEVP-------ERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIG 120

Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH---LYPKFLEMIIPHIKEG 231
                           + L+ + L + GF +        L  + L  ++P +   
Sbjct: 121 AAEGEVAP-----IPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRE 170

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 9/174 (5%)

Query: 60  LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
           +     T + G  E+   + G  V +      VG +    AKL G   +   GS+     
Sbjct: 9   ITDMMTTGFHGA-ELADIEMGSSVVVIGIGA-VGLMGIAGAKLRGAGRIIGVGSRPICVE 66

Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-LLDAVLPNMKIRGRIAAC 178
               +G  +  NYK     +  +K    +G+D      GG   L   +  +K  G I+  
Sbjct: 67  AAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNI 126

Query: 179 GMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK 232
                 +      V     +  K ++  G              E +   +   +
Sbjct: 127 NYHGSGDALLIPRVEWGCGMAHKTIKG-GLCPGGRLR-----AERLRDMVVYNR 174

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
            L     T Y G         G  V+++ A G VG      A+LLG  VV          
Sbjct: 6   CLSDILPTGYHGA-VTAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL 63

Query: 119 LLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG----------------KLL 162
                 GF+ A    +               +D   + VG                  +L
Sbjct: 64  AHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVL 123

Query: 163 DAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM 205
           ++++   ++ G+I   G+   Y  + P  V     + S  +R 
Sbjct: 124 NSLMQVTRVAGKIGIPGL---YVTEDPGAVDAAAKIGSLSIRF 163

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 25/179 (13%), Positives = 44/179 (24%), Gaps = 17/179 (9%)

Query: 59  ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD 118
           ++G    + Y           G    +    G VG       K+ G   + +     +  
Sbjct: 8   LIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKF 66

Query: 119 LLKNKFGFDEAFNYKEEAD-LNAALKRYFPEGIDIYFENVGGK--LLDAVLPNMKIRGRI 175
                 G  +  N +E    +   +      G+D   +  G    L  AV   +   G  
Sbjct: 67  PKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSC 126

Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIV--LDHYHLYPKFLEMIIPHIKEGK 232
              G        K + +      V     + G            P  +       K  K
Sbjct: 127 TVVGA-------KVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSD----YKNKK 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.97
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.94
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.93
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.93
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.92
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.91
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.9
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.62
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.59
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.54
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.54
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.44
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.4
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.38
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.32
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.31
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.3
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.26
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.24
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.2
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.18
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.15
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.12
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.08
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.08
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.04
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.04
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.03
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.96
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.84
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.69
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	98.63
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	98.62
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.57
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.5
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.42
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.41
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.39
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.38
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.37
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.32
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.3
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.29
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.27
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.27
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.26
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.25
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.24
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.24
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.23
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.23
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.21
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.2
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.19
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.18
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	98.15
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.14
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.12
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.11
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.1
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.06
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.05
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	98.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.01
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.98
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.98
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.98
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.96
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.96
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.95
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.94
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.94
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.92
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.92
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.91
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.88
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.85
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.84
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.81
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.79
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.78
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.78
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.78
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.68
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.64
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.57
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.56
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.54
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.53
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.53
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.52
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.49
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.48
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.48
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.44
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.44
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.4
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.38
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.33
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.31
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.29
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.26
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.18
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.17
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.11
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.07
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.04
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.04
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.03
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.03
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.02
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.99
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.96
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.94
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.92
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.9
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.85
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.82
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.79
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.77
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.77
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.76
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.74
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.72
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.64
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.59
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.57
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.55
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.53
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.38
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.35
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.34
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.33
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.32
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.3
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.26
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.21
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.11
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.04
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.0
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.98
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.97
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.94
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.91
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.9
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.9
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.9
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.88
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.88
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.86
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.84
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.83
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.81
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.78
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.78
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.59
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.59
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.54
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.52
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.5
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.5
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.43
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.43
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.42
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.41
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.35
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.34
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.31
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.3
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.17
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	95.12
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.11
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	95.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.05
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.0
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.99
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.97
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.81
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.78
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.77
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.73
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.72
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.71
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.62
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.59
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.57
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.55
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.52
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.45
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.4
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.38
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.34
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.31
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.28
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.19
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.02
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.99
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.91
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.84
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.77
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.74
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.74
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	93.69
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	93.62
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.61
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.6
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.58
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	93.53
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.49
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.47
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.41
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.26
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.23
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.22
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.08
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.08
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.02
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	93.01
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.96
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.96
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.89
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.8
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	92.69
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.52
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.51
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	92.43
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.4
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	92.33
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.27
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	92.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.13
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.12
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.95
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.92
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	91.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.8
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.75
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	91.67
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.45
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.44
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.28
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	91.27
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	91.24
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.24
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.04
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.96
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.82
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.78
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	90.77
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.59
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.5
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.16
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.1
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.94
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.88
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.72
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.63
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	89.61
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.37
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	89.24
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.07
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	89.05
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.03
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.65
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.63
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.61
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	88.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	88.47
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.46
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.39
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	88.33
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.2
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.86
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	87.84
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	87.73
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	87.67
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.45
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	86.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.67
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	86.61
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.44
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	86.44
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.24
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.09
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.08
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.0
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	85.97
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	85.96
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.95
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.54
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	85.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.49
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.46
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	85.25
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	85.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	84.95
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.63
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	84.26
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	84.2
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.14
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	84.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.11
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.05
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.88
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	83.87
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.83
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.81
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.68
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.63
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.62
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	83.37
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.32
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.19
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	83.03
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.7
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	82.41
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	82.31
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.05
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	82.01
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.8
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.68
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	81.58
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.46
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	81.43
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	81.42
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	81.37
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.24
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	81.24
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.11
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	80.67
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	80.56
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	80.53
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.06
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.04

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.1e-30  Score=195.89  Aligned_cols=175  Identities=22%  Similarity=0.337  Sum_probs=151.4

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++|+++++++|||++|.+.++++++++|||+||+|++|++++|+|+.+|++|+++++++++.+.++ ++|++++++++++
T Consensus         2 eAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~-~~Ga~~vi~~~~~   80 (183)
T d1pqwa_           2 EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYVGDSRSV   80 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEEEETTCS
T ss_pred             chhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc-cccccccccCCcc
Confidence            588999999999999999999999999999999999999999999999999999999999999999 9999999999987


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc-
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH-  213 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  213 (268)
                       ++.+.+++.+++ ++|+++||+|++.++.++++++++|+++.+|..+...     ........+.+++++.++..... 
T Consensus        81 -~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  154 (183)
T d1pqwa_          81 -DFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA-----DASLGLAALAKSASFSVVDLDLNL  154 (183)
T ss_dssp             -THHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT-----TCEEEGGGGTTTCEEEECCHHHHH
T ss_pred             -CHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCC-----CcccchHHHhCCcEEEEEEcccee
Confidence             999999999987 9999999999999999999999999999998755321     11222344568888888765433 


Q ss_pred             ---ccchHHHHHHHHHHHHcCCceeee
Q 024411          214 ---YHLYPKFLEMIIPHIKEGKLVYVE  237 (268)
Q Consensus       214 ---~~~~~~~~~~~~~~~~~g~l~~~~  237 (268)
                         +....+.++++.+++.+|+++|++
T Consensus       155 ~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         155 KLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence               334467889999999999999854

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.97  E-value=3.3e-30  Score=192.70  Aligned_cols=177  Identities=47%  Similarity=0.744  Sum_probs=150.9

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      ++...++++++++|||++|.+.+++++|++|||+||+|++|++++|+++..|++|+++++++++.+.++ ++|+++++++
T Consensus         3 ~~~~l~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~-~~Ga~~vi~~   81 (182)
T d1v3va2           3 LSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNY   81 (182)
T ss_dssp             GGGGGTTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEET
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH-hhhhhhhccc
Confidence            443357889999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CChhhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCC-CCccccchHHHHhcceeeeeEEe
Q 024411          133 KEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLD-KPEGVHNLMYLVSKRLRMEGFIV  210 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  210 (268)
                      +++ ++.+.+.+.+.+ ++|++|||+|++.+...+++++++|+++.+|..++.... ......++..++.+++++.|+..
T Consensus        82 ~~~-~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~  160 (182)
T d1v3va2          82 KTV-NSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIV  160 (182)
T ss_dssp             TSC-SCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCG
T ss_pred             ccc-cHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEE
Confidence            887 777777666555 999999999999999999999999999999976654322 12234566788999999999887


Q ss_pred             ccc-ccchHHHHHHHHHHHHcC
Q 024411          211 LDH-YHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       211 ~~~-~~~~~~~~~~~~~~~~~g  231 (268)
                      .++ .+...+.++++.+++.+|
T Consensus       161 ~~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         161 YRWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHTT
T ss_pred             eccChHHHHHHHHHHHHHHhCc
Confidence            766 344567788999998876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.2e-30  Score=190.29  Aligned_cols=164  Identities=26%  Similarity=0.376  Sum_probs=143.0

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++|+++++++|||++|.+.++++++++|||+||+|++|++++|+++.+|++|+++++++++.+.++ ++|+++++|+++.
T Consensus         5 ~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~vi~~~~~   83 (174)
T d1yb5a2           5 QGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHREV   83 (174)
T ss_dssp             HHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTST
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc-ccCcccccccccc
Confidence            488999999999999988889999999999999999999999999999999999999999999999 9999999999987


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY  214 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (268)
                       ++.+.+++.+++ ++|+++||+|+..++.++++++++|+++.+|..+       ....++..++.+++++.|+..++. 
T Consensus        84 -~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~-------~~~~~~~~~~~k~~~i~g~~~~~~-  154 (174)
T d1yb5a2          84 -NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG-------TIEINPRDTMAKESSIIGVTLFSS-  154 (174)
T ss_dssp             -THHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS-------CEEECTHHHHTTTCEEEECCGGGC-
T ss_pred             -cHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCC-------CCCCCHHHHHHCCCEEEEEEecCC-
Confidence             999999998887 9999999999999999999999999999998633       224556788899999999875442 


Q ss_pred             cchHHHHHHHHHHHHcC
Q 024411          215 HLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       215 ~~~~~~~~~~~~~~~~g  231 (268)
                        ..+.++++.+++.++
T Consensus       155 --~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         155 --TKEEFQQYAAALQAG  169 (174)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHH
Confidence              245566666665543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.8e-29  Score=186.04  Aligned_cols=179  Identities=37%  Similarity=0.658  Sum_probs=143.5

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCC--cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHG--ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEA  129 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~--~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v  129 (268)
                      +++...++++++.|||++|+..++++++  ++|||+||+|++|++++|+||.+|+ .|+.+++++++...+.+++|++++
T Consensus         2 ~~~~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~v   81 (187)
T d1vj1a2           2 LSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAA   81 (187)
T ss_dssp             GGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEE
T ss_pred             ccHHHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEE
Confidence            4545667899999999999999999987  8899999999999999999999999 566667777766655548999999


Q ss_pred             eecCChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCc----cccchHHHHhcceee
Q 024411          130 FNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPE----GVHNLMYLVSKRLRM  205 (268)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  205 (268)
                      +|++++ ++.+.+++.++.++|+++|++|++.+...+++++++|+++.+|..+++....+.    .......+..+++++
T Consensus        82 i~~~~~-~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~  160 (187)
T d1vj1a2          82 VNYKTG-NVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITR  160 (187)
T ss_dssp             EETTSS-CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEE
T ss_pred             eeccch-hHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEE
Confidence            999998 999999999877999999999999999999999999999999986654322111    112234456799999


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcCC
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      .++...++.+...+.++++.+++.+|+
T Consensus       161 ~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         161 ERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            998877777777889999999999885

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=3.7e-29  Score=184.15  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=134.4

Q ss_pred             hhhhccchHHHHHHHhh---hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           56 YTGILGMPGMTAYVGFY---EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~---~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      ++|+++++++|||++++   .....+++++|||+||+|++|.+++|+++..|++|+++++++++.+.++ ++|+++++|+
T Consensus         5 eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~lGa~~vi~~   83 (176)
T d1xa0a2           5 EAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVLAR   83 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEEEC
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hcccceeeec
Confidence            48999999999997764   4577889999999999999999999999999999999999999999999 9999999998


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      ++  .+.+.++...++++|+|+|++|+..+..++++|+++|+++.+|...+     .....+...++.|++++.|.+...
T Consensus        84 ~~--~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g-----~~~~~~~~~~~~k~~~i~Gv~~~~  156 (176)
T d1xa0a2          84 ED--VMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGG-----AEVPTTVHPFILRGVSLLGIDSVY  156 (176)
T ss_dssp             C-----------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSS-----SCCCCCSHHHHHTTCEEEECCSSS
T ss_pred             ch--hHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccC-----cccCCCHHHHHHCCcEEEEEeCCc
Confidence            75  44444444444499999999999999999999999999999998653     344577888999999999976433


Q ss_pred             cccchHHHHHHHHHHHHcCCcee
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                      .   ..+...++++.++ +.++|
T Consensus       157 ~---~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         157 C---PMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             C---CHHHHHHHHHHHH-TTTCC
T ss_pred             C---CHHHHHHHHHHHh-cccCC
Confidence            2   2444555566554 66665

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.9e-28  Score=182.81  Aligned_cols=170  Identities=25%  Similarity=0.283  Sum_probs=139.0

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++|+++++++|||++|.+.++++++++|||+||+|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|++++
T Consensus         5 ~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~lGa~~vi~~~~~   83 (179)
T d1qora2           5 QAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYREE   83 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hcCCeEEEECCCC
Confidence            488999999999999998889999999999999999999999999999999999999999999999 9999999999987


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhc-ceeeeeEEeccc
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSK-RLRMEGFIVLDH  213 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  213 (268)
                       ++.+.+++.+++ ++|+++|++|++.+..++++++++|+++.++...+.     ....+...+..+ .+.+.+..+..+
T Consensus        84 -d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~  157 (179)
T d1qora2          84 -DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQGY  157 (179)
T ss_dssp             -CHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHHHH
T ss_pred             -CHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCC-----ccccchhhhhccceEEEEeeEEeee
Confidence             999999999988 999999999999999999999999999999875532     222233333332 233332222222


Q ss_pred             ---ccchHHHHHHHHHHHHcCC
Q 024411          214 ---YHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       214 ---~~~~~~~~~~~~~~~~~g~  232 (268)
                         ++...+.++++++++++|.
T Consensus       158 ~~~~~~~~~~~~~l~~lv~~Gv  179 (179)
T d1qora2         158 ITTREELTEASNELFSLIASGV  179 (179)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHCcC
Confidence               3334556777888888773

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=1.7e-27  Score=176.45  Aligned_cols=168  Identities=21%  Similarity=0.251  Sum_probs=146.2

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      .++.++|++.|||+++.+.++++++++|+|+|+ |++|++++|+++.+|+ +|+++++++++++.++ ++|+++++|+++
T Consensus         5 ~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~Ga~~~i~~~~   82 (174)
T d1f8fa2           5 LLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSKT   82 (174)
T ss_dssp             GTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEEETTT
T ss_pred             HHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcCCeEEEeCCC
Confidence            388999999999999988899999999999997 9999999999999999 5667788899999999 999999999998


Q ss_pred             hhhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          135 EADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       135 ~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                      + ++.+.+++.+++++|++|||+|. ..+..++++++++|+++.+|....    .....++...++.+++++.|+..+++
T Consensus        83 ~-~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~----~~~~~~~~~~~~~k~~~i~Gs~~g~~  157 (174)
T d1f8fa2          83 Q-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQL----GTTAQFDVNDLLLGGKTILGVVEGSG  157 (174)
T ss_dssp             S-CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCST----TCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred             c-CHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCC----CcccccCHHHHHHCCCEEEEEEecCC
Confidence            7 89999999998899999999998 788999999999999999986431    12234677888999999999876553


Q ss_pred             ccchHHHHHHHHHHHHcCC
Q 024411          214 YHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~  232 (268)
                        ..+++++++++++++|+
T Consensus       158 --~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         158 --SPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             --CHHHHHHHHHHHHHTTS
T ss_pred             --ChHHHHHHHHHHHHcCC
Confidence              23577899999999885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=4.2e-27  Score=173.86  Aligned_cols=163  Identities=19%  Similarity=0.256  Sum_probs=145.6

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ++|+++|++.|||+++. ..+++++++|+|+|++|++|++++|+++.+|+ +|++++.++++.+.++ ++|++++++++.
T Consensus         5 eAA~l~c~~~Ta~~al~-~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~i~~~~   82 (170)
T d1jvba2           5 EAAPLTCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASM   82 (170)
T ss_dssp             HHGGGGTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCceeeccCC
Confidence            58999999999999995 57899999999999889999999999999996 9999999999999999 999999999988


Q ss_pred             hhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          135 EADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       135 ~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      + ++.+.+++.+.+ ++|+++||+|+ ..++.++++++++|+++.+|...      ....++...++.+++++.|+..++
T Consensus        83 ~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~k~i~i~Gs~~~~  155 (170)
T d1jvba2          83 Q-DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG------ADLHYHAPLITLSEIQFVGSLVGN  155 (170)
T ss_dssp             S-CHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSC------CCCCCCHHHHHHHTCEEEECCSCC
T ss_pred             c-CHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEecccc------CccccCHHHHHhCCcEEEEEecCC
Confidence            7 888888988877 89999999998 67899999999999999998743      224566778889999999988766


Q ss_pred             cccchHHHHHHHHHHHHcCC
Q 024411          213 HYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~  232 (268)
                           .++++++++++++|+
T Consensus       156 -----~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         156 -----QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             -----HHHHHHHHHHHHTTS
T ss_pred             -----HHHHHHHHHHHHcCC
Confidence                 788999999999886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=3.7e-26  Score=168.93  Aligned_cols=161  Identities=20%  Similarity=0.268  Sum_probs=139.1

Q ss_pred             hhhhccchHHHHHHHhhhhc-CCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           56 YTGILGMPGMTAYVGFYEVC-SPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~-~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      ++|+++++++|||+++.+.. .++++++|+|+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++++.
T Consensus         8 eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~-~~ga~~~i~~~   85 (172)
T d1h2ba2           8 EMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVVDAR   85 (172)
T ss_dssp             HTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEEEETT
T ss_pred             HHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHh-hcccceeecCc
Confidence            48899999999999998765 4799999999997 9999999999999997 7788888999999999 99999999988


Q ss_pred             ChhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          134 EEADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      +  +..+...+.+.+ ++|+++||+|+ ..++.++++++++|+++.+|...       ....+...++.+++++.|+..+
T Consensus        86 ~--~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-------~~~~~~~~l~~k~~~i~Gs~~~  156 (172)
T d1h2ba2          86 R--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-------ELRFPTIRVISSEVSFEGSLVG  156 (172)
T ss_dssp             S--CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-------CCCCCHHHHHHTTCEEEECCSC
T ss_pred             c--cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-------cccCCHHHHHhCCcEEEEEEec
Confidence            7  445556666666 99999999998 67899999999999999998632       2346677889999999999877


Q ss_pred             ccccchHHHHHHHHHHHHcCC
Q 024411          212 DHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      +     .++++++++++++|+
T Consensus       157 ~-----~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         157 N-----YVELHELVTLALQGK  172 (172)
T ss_dssp             C-----HHHHHHHHHHHHTTS
T ss_pred             C-----HHHHHHHHHHHHcCC
Confidence            6     677899999999885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.3e-26  Score=171.67  Aligned_cols=166  Identities=23%  Similarity=0.283  Sum_probs=138.8

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      ++ .+|++.|+++|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++|
T Consensus         3 ~~-~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~   79 (182)
T d1vj0a2           3 LD-VLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLN   79 (182)
T ss_dssp             HH-HHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEE
T ss_pred             HH-HHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-Cccchhheecccccccccccccccccccccccc-cccceEEEe
Confidence            44 388999999999999988889999999999997 9999999999999998 8999999999999999 999999999


Q ss_pred             cCChhh---HHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccc-hHHHHhcceee
Q 024411          132 YKEEAD---LNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHN-LMYLVSKRLRM  205 (268)
Q Consensus       132 ~~~~~~---~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~  205 (268)
                      +++. +   ..+.+.+.+.+ ++|++|||+|+ ..+..++++++++|+++.+|...+.    .....+ +..++.+++++
T Consensus        80 ~~~~-~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~l~~k~l~i  154 (182)
T d1vj0a2          80 RRET-SVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ----DPVPFKVYEWLVLKNATF  154 (182)
T ss_dssp             TTTS-CHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCC----CCEEECHHHHTTTTTCEE
T ss_pred             cccc-chHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCC----CccccccHHHHHHCCcEE
Confidence            9875 4   34557777777 89999999998 6789999999999999999864321    112233 34567899999


Q ss_pred             eeEEecccccchHHHHHHHHHHHHcC
Q 024411          206 EGFIVLDHYHLYPKFLEMIIPHIKEG  231 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g  231 (268)
                      .|+..++     .+.+++++++++++
T Consensus       155 ~G~~~~~-----~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         155 KGIWVSD-----TSHFVKTVSITSRN  175 (182)
T ss_dssp             EECCCCC-----HHHHHHHHHHHHTC
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHC
Confidence            9988776     66778888887765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=3.4e-26  Score=168.31  Aligned_cols=162  Identities=23%  Similarity=0.293  Sum_probs=138.2

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++|+++|+++|||+++. .++++++++|+|+|+ |++|++++|++|.+|++|+++++++++.+.++ ++|+++++|+.++
T Consensus         5 ~aA~l~ca~~Ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~   81 (166)
T d1llua2           5 EIAPILCAGVTVYKGLK-QTNARPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KLGASLTVNARQE   81 (166)
T ss_dssp             HHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTTS
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCCCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh-ccCccccccccch
Confidence            48899999999999995 478999999999997 99999999999999999999999999999999 9999999999887


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccccc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH  215 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (268)
                       +..+.+++.+.+..++++++.++..+..++++++++|+++.+|...      .....+...++.+++++.|+..++   
T Consensus        82 -~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~k~~~i~Gs~~~~---  151 (166)
T d1llua2          82 -DPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPP------GDFPTPIFDVVLKGLHIAGSIVGT---  151 (166)
T ss_dssp             -CHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCS------SEEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             -hHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecC------CCccCCHHHHHhCCcEEEEEeecC---
Confidence             7888887766554444444445589999999999999999998743      234567788899999999987766   


Q ss_pred             chHHHHHHHHHHHHcCC
Q 024411          216 LYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       216 ~~~~~~~~~~~~~~~g~  232 (268)
                        .++++++++++++|.
T Consensus       152 --~~d~~e~l~l~~~Gl  166 (166)
T d1llua2         152 --RADLQEALDFAGEGL  166 (166)
T ss_dssp             --HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHCcC
Confidence              677899999998873

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.94  E-value=1.1e-26  Score=174.27  Aligned_cols=171  Identities=21%  Similarity=0.289  Sum_probs=137.3

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEe-cCcchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCCeee
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFIS-AASGAVGQLVGQFAKLLGCYVVGSAGSKD----KVDLLKNKFGFDEAF  130 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~-ga~g~~G~~~i~l~~~~g~~V~~~~~~~~----~~~~~~~~~g~~~v~  130 (268)
                      ++|++++.++|||++|.+.+++++|++++|+ ||+|++|++++|+||.+|++|++++++++    +.+.++ ++|+++++
T Consensus         5 ~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~-~lGad~vi   83 (189)
T d1gu7a2           5 QGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQVI   83 (189)
T ss_dssp             HHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSEEE
T ss_pred             HHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhh-hccccEEE
Confidence            4899999999999999988999999988886 78899999999999999999999986644    345566 89999999


Q ss_pred             ecCCh--hhHHHHHHHH---CCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceee
Q 024411          131 NYKEE--ADLNAALKRY---FPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRM  205 (268)
Q Consensus       131 ~~~~~--~~~~~~~~~~---~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (268)
                      ++++.  .++.+.+++.   .++++|++||++|++.+...+++|+++|+++.+|..++     .....+...++.+++++
T Consensus        84 ~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~-----~~~~~~~~~l~~k~~~i  158 (189)
T d1gu7a2          84 TEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSF-----QPVTIPTSLYIFKNFTS  158 (189)
T ss_dssp             EHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSS-----CCEEECHHHHHHSCCEE
T ss_pred             eccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccC-----CCccCcHHHHHHCCcEE
Confidence            88642  1344444443   24489999999999999999999999999999997543     22345677888899999


Q ss_pred             eeEEeccc----ccchHHHHHHHHHHHHcCC
Q 024411          206 EGFIVLDH----YHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       206 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~  232 (268)
                      .|+....+    ++...+.++++.+++++|+
T Consensus       159 ~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         159 AGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            99877654    2234567888888888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=4.8e-26  Score=167.94  Aligned_cols=166  Identities=23%  Similarity=0.267  Sum_probs=144.3

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      ++ ++|+++++++|||++++ ..+++++++|+|+|+ |++|++++|+++..|++|++++.++++++.++ ++|++.++++
T Consensus         3 ~e-eAA~l~~~~~Ta~~al~-~~~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k-~~Ga~~~~~~   78 (168)
T d1rjwa2           3 FE-EAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNP   78 (168)
T ss_dssp             HH-HHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECT
T ss_pred             HH-HHHHHHHHHHHHHHHHH-HhCCCCCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhh-hcCcceeccc
Confidence            44 48899999999999995 568999999999986 99999999999999999999999999999999 9999999999


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      .+. ++...+++.+.+..|+++++.+...+..++++++++|+++.+|...      .....+...++.+++++.|+..++
T Consensus        79 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~------~~~~~~~~~~~~~~~~i~gs~~~~  151 (168)
T d1rjwa2          79 LKE-DAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP------EEMPIPIFDTVLNGIKIIGSIVGT  151 (168)
T ss_dssp             TTS-CHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS------SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             ccc-hhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEeccccc------CCCCCCHHHHHHCCcEEEEEeeCC
Confidence            987 8888899888776666666555688999999999999999998743      334567788899999999977655


Q ss_pred             cccchHHHHHHHHHHHHcCCce
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~  234 (268)
                           .++++++++++++|+++
T Consensus       152 -----~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 -----RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             -----HHHHHHHHHHHHTTSCC
T ss_pred             -----HHHHHHHHHHHHhCCCC
Confidence                 77899999999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.5e-27  Score=174.81  Aligned_cols=158  Identities=24%  Similarity=0.327  Sum_probs=124.8

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++|+++++++|||++|.+ ++++++++|||+||+|++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+.+ 
T Consensus         5 eAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~lGa~~~i~~~~-   81 (171)
T d1iz0a2           5 EAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAE-   81 (171)
T ss_dssp             HHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGG-
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-ccccceeeehhh-
Confidence            488899999999999965 79999999999999999999999999999999999999999999999 999999998864 


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccccc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH  215 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (268)
                        ....+..  ++++|++|||+| +.+..++++++++|+++.+|..++     .....+...++.+++++.|+...++.+
T Consensus        82 --~~~~~~~--~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g-----~~~~~~~~~~~~k~~~i~g~~~~~~~~  151 (171)
T d1iz0a2          82 --VPERAKA--WGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEG-----EVAPIPPLRLMRRNLAVLGFWLTPLLR  151 (171)
T ss_dssp             --HHHHHHH--TTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHHTT
T ss_pred             --hhhhhhc--cccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCC-----CCCCccHHHHHHCCcEEEEEeCcChhh
Confidence              2223322  238999999988 578899999999999999987543     223455678889999999988765422


Q ss_pred             chHHHHHHHHHH
Q 024411          216 LYPKFLEMIIPH  227 (268)
Q Consensus       216 ~~~~~~~~~~~~  227 (268)
                       ..+.+++....
T Consensus       152 -~~~~~~~~~~~  162 (171)
T d1iz0a2         152 -EGALVEEALGF  162 (171)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             -hHHHHHHHHHH
Confidence             23444444443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=4.4e-26  Score=168.24  Aligned_cols=166  Identities=18%  Similarity=0.146  Sum_probs=133.6

Q ss_pred             hhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           57 TGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        57 ~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      ++.+++++.|+|+++ +.++++++++|+|+|+ |++|++++|+++.+|+ +|++++++++|.+.++ ++|+++++|++++
T Consensus         6 A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lGa~~~i~~~~~   82 (174)
T d1jqba2           6 AVMITDMMTTGFHGA-ELADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYGATDILNYKNG   82 (174)
T ss_dssp             HHTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHTCSEEECGGGS
T ss_pred             HHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hhCccccccccch
Confidence            667889999999998 5589999999999997 9999999999999998 8999999999999999 9999999999887


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEeccc
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDH  213 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (268)
                       ++.+.+++.+++ ++|++|||+|+ ..+++++++++++|+++.+|.......  ............++.++.+..... 
T Consensus        83 -~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~--~~~~~~~~~~~~~~~~i~g~~~~~-  158 (174)
T d1jqba2          83 -HIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDA--LLIPRVEWGCGMAHKTIKGGLCPG-  158 (174)
T ss_dssp             -CHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSE--EEEETTTTGGGTBCCEEEEBCCCC-
T ss_pred             -hHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCc--CcCcHhHHHHHhCccEEEEecCCC-
Confidence             889999999988 99999999997 678999999999999999987442100  000011122334666776655433 


Q ss_pred             ccchHHHHHHHHHHHHcCC
Q 024411          214 YHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       214 ~~~~~~~~~~~~~~~~~g~  232 (268)
                         .+...+.+.+++..|+
T Consensus       159 ---~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         159 ---GRLRAERLRDMVVYNR  174 (174)
T ss_dssp             ---HHHHHHHHHHHHHTTS
T ss_pred             ---CcccHHHHHHHHHcCC
Confidence               2455677778888764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-26  Score=167.72  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=135.1

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      .+|++.|++.|||+++. .++++++++|+|+|+ |++|++++|+++.+|++|+++++++++.+.++ ++|+++++++.++
T Consensus         5 ~AApl~cag~Ta~~al~-~~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~~   81 (168)
T d1piwa2           5 LAAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEE   81 (168)
T ss_dssp             HHGGGGTHHHHHHHHHH-HTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEGGGT
T ss_pred             HHHHHHHHHHHHHHHHH-HhCcCCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-ccCCcEEeeccch
Confidence            37899999999999995 578999999999997 99999999999999999999999999999999 9999999988653


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCChh---hHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGGK---LLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      .+.    .+...+++|+++||++..   .+..++++++++|+++.+|...      .....+...++.+++++.|+..++
T Consensus        82 ~~~----~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~------~~~~~~~~~~~~k~~~i~Gs~~g~  151 (168)
T d1piwa2          82 GDW----GEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE------QHEMLSLKPYGLKAVSISYSALGS  151 (168)
T ss_dssp             SCH----HHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC------SSCCEEECGGGCBSCEEEECCCCC
T ss_pred             HHH----HHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc------ccccccHHHHHhCCcEEEEEeeCC
Confidence            122    233345799999998852   4788999999999999998743      223455566788999999987766


Q ss_pred             cccchHHHHHHHHHHHHcCCce
Q 024411          213 HYHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~l~  234 (268)
                           .++++++++++++|+++
T Consensus       152 -----~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         152 -----IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             -----HHHHHHHHHHHHHTTCC
T ss_pred             -----HHHHHHHHHHHHhCCCC
Confidence                 77899999999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=1.7e-25  Score=164.92  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=134.5

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      ++ .+|.++|++.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|+ +|++++.++++.+.++ ++|++++++
T Consensus         3 Le-~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~Ga~~~i~   79 (174)
T d1e3ia2           3 LE-RVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCLN   79 (174)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEEC
T ss_pred             HH-HHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-HhCCCcccC
Confidence            44 488999999999999988899999999999997 9999999999999999 7889999999999999 999999998


Q ss_pred             cCChhhHHHHHH-HHCCCCccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCCCccccchHHHHhcceeeeeE
Q 024411          132 YKEEADLNAALK-RYFPEGIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGF  208 (268)
Q Consensus       132 ~~~~~~~~~~~~-~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (268)
                      +...++....+. ...++++|++|||+|. ..+.+++++++++ |+++.+|...      ....++...++. +.++.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~------~~~~i~~~~~~~-~k~i~Gs  152 (174)
T d1e3ia2          80 PRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV------DEMTIPTVDVIL-GRSINGT  152 (174)
T ss_dssp             GGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS------SEEEEEHHHHHT-TCEEEEC
T ss_pred             CccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC------CccccchHHHhc-cCEEEEE
Confidence            764313344444 4445599999999998 7899999999996 9999998743      222344444443 4577777


Q ss_pred             EecccccchHHHHHHHHHHHHcCC
Q 024411          209 IVLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      ..+++.  ..+++.++++++++|+
T Consensus       153 ~~Gs~~--~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         153 FFGGWK--SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             SGGGCC--HHHHHHHHHHHHHTTS
T ss_pred             EeeCCC--hHHHHHHHHHHHHCcC
Confidence            665542  3577889999998875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.5e-25  Score=164.91  Aligned_cols=160  Identities=21%  Similarity=0.254  Sum_probs=132.2

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      .+|++.|++.|+|+++. .+++++|++|+|+|+ |++|++++|+++.+|++++++++++++.+.++ ++|+++++|+.+.
T Consensus         8 ~~Apl~Cag~Tay~al~-~~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~lGad~~i~~~~~   84 (168)
T d1uufa2           8 AVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNA   84 (168)
T ss_dssp             HHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEETTCH
T ss_pred             HHHHHHhHHHHHHHHHH-HhCCCCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHh-ccCCcEEEECchh
Confidence            37789999999999994 689999999999997 99999999999999999999999999999998 9999999999875


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHY  214 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (268)
                       +..    ....+++|+++|++|. ..+..++++++++|+++.+|...+     +....+...++.+++++.|+..++  
T Consensus        85 -~~~----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~l~~k~~~i~Gs~~~~--  152 (168)
T d1uufa2          85 -DEM----AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPAT-----PHKSPEVFNLIMKRRAIAGSMIGG--  152 (168)
T ss_dssp             -HHH----HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCC--
T ss_pred             -hHH----HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCC-----CcccccHHHHHHCCcEEEEEeecC--
Confidence             322    1122389999999998 679999999999999999987432     233456677888999999988766  


Q ss_pred             cchHHHHHHHHHHHHcCCc
Q 024411          215 HLYPKFLEMIIPHIKEGKL  233 (268)
Q Consensus       215 ~~~~~~~~~~~~~~~~g~l  233 (268)
                         .+++++++++++++++
T Consensus       153 ---~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 ---IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             ---HHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHcCC
Confidence               6778888998887653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=6.2e-25  Score=163.12  Aligned_cols=169  Identities=19%  Similarity=0.198  Sum_probs=135.4

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ++|.++|++.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++|+.+
T Consensus         5 ~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~lGa~~~i~~~~   82 (176)
T d2fzwa2           5 KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECINPQD   82 (176)
T ss_dssp             HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEECGGG
T ss_pred             HHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-HhCCcEEEeCCc
Confidence            488999999999999988889999999999998 8999999999999997 7888888889999999 999999998864


Q ss_pred             h-hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          135 E-ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       135 ~-~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      . +...+.+++.+++++|+++|++|+ ..+..+..+++++|+++.++....    ...........+.++.++.|+..++
T Consensus        83 ~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~----~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2fzwa2          83 FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA----SGEEIATRPFQLVTGRTWKGTAFGG  158 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC----TTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             hhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeecc----ccccccccHHHHHCCCEEEEEeeeC
Confidence            2 156666777766799999999998 667888888989888877754332    1122233344456778998887665


Q ss_pred             cccchHHHHHHHHHHHHcCC
Q 024411          213 HYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~g~  232 (268)
                      ..  ..+++.++++++++|+
T Consensus       159 ~~--~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         159 WK--SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CC--HHHHHHHHHHHHHTTS
T ss_pred             Cc--HHHHHHHHHHHHHcCC
Confidence            42  3567888999999885

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.93  E-value=1e-24  Score=160.92  Aligned_cols=163  Identities=17%  Similarity=0.214  Sum_probs=133.0

Q ss_pred             hhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           55 YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        55 ~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ++.|++..+.++||+++. .++++++++|+|+|+ |++|++++|+++.+|++|+++++++++.+.++ ++|++.+++++.
T Consensus         3 ~e~Aal~ePla~a~~a~~-~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~-~~ga~~~~~~~~   79 (170)
T d1e3ja2           3 LEEGALLEPLSVGVHACR-RAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDP   79 (170)
T ss_dssp             HHHHHTHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccchHHHHHHHHH-HcCCcEEEeccc
Confidence            456778889999999994 568999999999985 99999999999999999999999999999999 999987665442


Q ss_pred             --h--hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          135 --E--ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       135 --~--~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                        .  .+..+.+.+..++++|+++||+|+ ..+..++++++++|+++.+|...      .....++..++.+++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~------~~~~~~~~~~~~k~i~i~gs~  153 (170)
T d1e3ja2          80 AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS------QMVTVPLVNACAREIDIKSVF  153 (170)
T ss_dssp             TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS------SCCCCCHHHHHTTTCEEEECC
T ss_pred             cccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC------CCCCcCHHHHHHCCCEEEEEE
Confidence              1  134455666666699999999998 67899999999999999999743      223466778889999999875


Q ss_pred             ecccccchHHHHHHHHHHHHcCC
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      .+.      ++++++++++++|+
T Consensus       154 ~~~------~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         154 RYC------NDYPIALEMVASGR  170 (170)
T ss_dssp             SCS------SCHHHHHHHHHTTS
T ss_pred             CCH------HHHHHHHHHHHcCC
Confidence            432      24677888888875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=6.7e-25  Score=161.96  Aligned_cols=167  Identities=16%  Similarity=0.155  Sum_probs=133.9

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ++|.|.|++.|+|+++.+.++++++++|+|+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++|+++
T Consensus         4 eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~lGa~~~i~~~~   81 (174)
T d1p0fa2           4 ESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNPKD   81 (174)
T ss_dssp             GGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECGGG
T ss_pred             HHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-HcCCcEEEcCCC
Confidence            478999999999999988899999999999997 9999999999999998 8999999999999999 999999998876


Q ss_pred             hhh-HHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhc-CCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          135 EAD-LNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKI-RGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       135 ~~~-~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      .+. ..+..+..+++++|+++|++|+ ..+..++..+.+ +|+++.+|....    ....+.+... +.++.++.|+..+
T Consensus        82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~----~~~~~~~~~~-~~~~~~i~Gs~~G  156 (174)
T d1p0fa2          82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP----NERLPLDPLL-LLTGRSLKGSVFG  156 (174)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT----TCCEEECTHH-HHTTCEEEECSGG
T ss_pred             chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecC----ccccccCHHH-HhCCCEEEEEEeC
Confidence            412 4555555566699999999998 677888888766 599999987432    1222233333 4467899988765


Q ss_pred             ccccchHHHHHHHHHHHHcCC
Q 024411          212 DHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      ++   ..++++++++++++|+
T Consensus       157 ~~---~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         157 GF---KGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             GC---CGGGHHHHHHHHHTTS
T ss_pred             CC---CHHHHHHHHHHHHcCC
Confidence            53   2446888999998875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-25  Score=162.87  Aligned_cols=164  Identities=16%  Similarity=0.175  Sum_probs=135.8

Q ss_pred             hhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           55 YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        55 ~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      ++.|++..++++||+++. .++++++++|+|+|+ |++|++++|+++.+|+ +|+++++++++.+.++ ++|+++++++.
T Consensus         3 ~e~Aal~epla~a~~a~~-~~~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~   79 (171)
T d1pl8a2           3 FEEGALIEPLSVGIHACR-RGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQIS   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhCCccccccc
Confidence            456778889999999985 568999999999997 9999999999999999 8999999999999999 99999988887


Q ss_pred             ChhhHHHHHH---HHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          134 EEADLNAALK---RYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       134 ~~~~~~~~~~---~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +. +..+..+   ...+.++|+++||+|+ ..++.++++++++|+++.+|...      .....++..++.+++++.|+.
T Consensus        80 ~~-~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~------~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          80 KE-SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS------EMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             SC-CHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC------SCCCCCHHHHHHTTCEEEECC
T ss_pred             cc-ccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC------CCCccCHHHHHHCCcEEEEEe
Confidence            65 4443333   3333489999999998 67899999999999999999743      223467788889999999875


Q ss_pred             ecccccchHHHHHHHHHHHHcCCce
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      .+      .+.++++++++++|++.
T Consensus       153 ~~------~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         153 RY------CNTWPVAISMLASKSVN  171 (171)
T ss_dssp             SC------SSCHHHHHHHHHTTSCC
T ss_pred             CC------HhHHHHHHHHHHcCCCC
Confidence            43      23467889999999873

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.92  E-value=3.3e-24  Score=159.02  Aligned_cols=171  Identities=18%  Similarity=0.176  Sum_probs=134.6

Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeee
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFN  131 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~  131 (268)
                      ++ ++|.++|++.|+|+++.+.+++++|++|+|+|+ |++|++++++++..|+ +|+++++++++.+.++ ++|++++++
T Consensus         3 le-~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~-~~Ga~~~i~   79 (176)
T d2jhfa2           3 LE-KVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVN   79 (176)
T ss_dssp             HH-HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEEC
T ss_pred             HH-HHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH-HhCCeeEEe
Confidence            44 489999999999999988899999999999998 8999999999999996 9999999999999999 999999887


Q ss_pred             cCChh-hHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEE
Q 024411          132 YKEEA-DLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFI  209 (268)
Q Consensus       132 ~~~~~-~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (268)
                      +.+.+ ......+...++++|++||++|. ..+..++..++++|+.+.++...+    ..........++.+++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~i~Gs~  155 (176)
T d2jhfa2          80 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP----DSQNLSMNPMLLLSGRTWKGAI  155 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC----TTCCEEECTHHHHTTCEEEECS
T ss_pred             cCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCC----CcccccccHHHHhCCCEEEEEE
Confidence            75421 34555555556699999999998 677889999998755555544221    1222233345667899999987


Q ss_pred             ecccccchHHHHHHHHHHHHcCC
Q 024411          210 VLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      .+++  ..++++.++++++.+|+
T Consensus       156 ~G~~--~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         156 FGGF--KSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             GGGC--CHHHHHHHHHHHHHTTS
T ss_pred             EeCC--CHHHHHHHHHHHHHCcC
Confidence            6554  23667888899988875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.6e-25  Score=165.00  Aligned_cols=162  Identities=21%  Similarity=0.296  Sum_probs=127.6

Q ss_pred             hhhhccchHHHHHHHhhh---hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 024411           56 YTGILGMPGMTAYVGFYE---VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY  132 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~---~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~  132 (268)
                      +++++++++.|||++++.   .....++++|||+||+|++|++++|+||.+|++|+++++++++.+.++ ++|+++++|+
T Consensus         5 ~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~-~lGad~vi~~   83 (177)
T d1o89a2           5 KAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGASRVLPR   83 (177)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTEEEEEEG
T ss_pred             HHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH-hhcccccccc
Confidence            588999999999987653   333445569999999999999999999999999999999999999998 9999999998


Q ss_pred             CChhhHHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecc
Q 024411          133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD  212 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
                      ++. ++.+   .......|.++|++|++.+...+++++++|+++.+|..++.     ....+...++.+++++.|++...
T Consensus        84 ~~~-~~~~---~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~-----~~~~~~~~~~~k~~~i~G~~~~~  154 (177)
T d1o89a2          84 DEF-AESR---PLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF-----TLPTTVMPFILRNVRLQGVDSVM  154 (177)
T ss_dssp             GGS-SSCC---SSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS-----CCCCCSHHHHHHCCEEEECCSSS
T ss_pred             ccH-HHHH---HHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCc-----cccccHHHHHHCCCeEEEEeccc
Confidence            764 3322   22223689999999999999999999999999999986543     33456678889999999976543


Q ss_pred             c-ccchHHHHHHHHHH
Q 024411          213 H-YHLYPKFLEMIIPH  227 (268)
Q Consensus       213 ~-~~~~~~~~~~~~~~  227 (268)
                      . ++...+.++++.+.
T Consensus       155 ~~~~~~~~~~~~L~~~  170 (177)
T d1o89a2         155 TPPERRAQAWQRLVAD  170 (177)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            2 33333444444443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.92  E-value=5.4e-24  Score=157.79  Aligned_cols=167  Identities=15%  Similarity=0.128  Sum_probs=132.8

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      ++|.++|++.|+|+++.+.++++++++|+|+|+ |++|++++++++..++ +|+++++++++.+.++ ++|+++++|+++
T Consensus         5 ~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~GAd~~in~~~   82 (175)
T d1cdoa2           5 TVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNPND   82 (175)
T ss_dssp             HHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEECGGG
T ss_pred             HHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-HcCCcEEEcCCC
Confidence            488999999999999988899999999999997 9999999999999888 8999999999999999 999999999876


Q ss_pred             hhhHHHHHHHHCC-CCccEEEeCCCh-hhHHhHHHhhhcCCEEEE-EcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          135 EADLNAALKRYFP-EGIDIYFENVGG-KLLDAVLPNMKIRGRIAA-CGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       135 ~~~~~~~~~~~~~-~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      +++......+.+. +++|+++|++|+ ..+..+..++.++|.++. .+...      ..........+.++.++.|+..+
T Consensus        83 ~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~------~~~~~~~~~~~~~~~~i~Gs~~G  156 (175)
T d1cdoa2          83 HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD------LHDVATRPIQLIAGRTWKGSMFG  156 (175)
T ss_dssp             CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS------SSCEEECHHHHHTTCEEEECSGG
T ss_pred             cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC------CcccCccHHHHHCCcEEEEEEEe
Confidence            4234455555554 499999999998 677888888877655544 44422      22233445556778899998766


Q ss_pred             ccccchHHHHHHHHHHHHcCC
Q 024411          212 DHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      ++  ..++++.++++++++|+
T Consensus       157 ~~--~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         157 GF--KGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             GC--CHHHHHHHHHHHHHTTS
T ss_pred             CC--cHHHHHHHHHHHHHcCC
Confidence            54  23678899999999885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.5e-25  Score=163.56  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=124.1

Q ss_pred             chHHHHHHH---hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           62 MPGMTAYVG---FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        62 ~~~~~a~~~---l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      +++.|||.+   |.+.....++++|||+||+|++|++++|+||.+|++|+++++++++.+.++ ++|+++++++++  ..
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~-~lGad~vi~~~~--~~   79 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISRED--VY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHHH--HC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH-hhcccceEeccc--hh
Confidence            345677654   545555677889999999999999999999999999999999999999999 999999988753  22


Q ss_pred             HHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHhcceeeeeEEecccccchH
Q 024411          139 NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYP  218 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (268)
                      .+.+....++++|+++|++|++.+..++++|+++|+++.+|..++     .....+...++.+++++.|+.....   ..
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g-----~~~~~~~~~l~~k~~~i~G~~~~~~---~~  151 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGG-----GEVPATVYPFILRGVSLLGIDSVYC---PM  151 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSC-----SCEEECSHHHHTSCCEEEECCSSSC---CH
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCC-----CcccCCHHHHHHCCcEEEEEecCCC---CH
Confidence            222323333489999999999999999999999999999998654     3345677888999999999764332   13


Q ss_pred             HHHHHHHHHHHcCCcee
Q 024411          219 KFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       219 ~~~~~~~~~~~~g~l~~  235 (268)
                      +..+++.+.+. +.++|
T Consensus       152 ~~~~~~~~~l~-~~L~P  167 (167)
T d1tt7a2         152 DVRAAVWERMS-SDLKP  167 (167)
T ss_dssp             HHHHHHHHHTT-TTSCC
T ss_pred             HHHHHHHHHHH-hcCCC
Confidence            44444555443 34443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.91  E-value=7.6e-24  Score=156.42  Aligned_cols=166  Identities=16%  Similarity=0.147  Sum_probs=129.8

Q ss_pred             hhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 024411           56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKE  134 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~  134 (268)
                      .+|.++|++.|+|+++.+.++++++++|+|+|+ |++|++++|+++.+|+ +|++++.++++++.++ ++|+++++|+.+
T Consensus         6 ~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~GA~~~in~~~   83 (176)
T d1d1ta2           6 KVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AVGATECISPKD   83 (176)
T ss_dssp             HHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HHTCSEEECGGG
T ss_pred             HHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hcCCcEEECccc
Confidence            488999999999999988889999999999997 9999999999999996 8999999999999999 999999999876


Q ss_pred             hhhHHHHHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcC-CEEEEEcccccccCCCCccccchHHHHhcceeeeeEEec
Q 024411          135 EADLNAALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIR-GRIAACGMISQYNLDKPEGVHNLMYLVSKRLRMEGFIVL  211 (268)
Q Consensus       135 ~~~~~~~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (268)
                      .+.....+.+.+.+ ++|+++|++|. ..+..+...+.++ |+++.+|.....    .....+.. .+.++.++.|+..+
T Consensus        84 ~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~----~~~~~~~~-~~~~~~~i~Gs~~G  158 (176)
T d1d1ta2          84 STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA----KMLTYDPM-LLFTGRTWKGCVFG  158 (176)
T ss_dssp             CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTT----CCEEECTH-HHHTTCEEEECSGG
T ss_pred             cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccc----cccCCCHH-HHhCCCEEEEEEEe
Confidence            42334555555544 99999999998 5677777777655 999999874321    11122233 34467789887765


Q ss_pred             ccccchHHHHHHHHHHHHc
Q 024411          212 DHYHLYPKFLEMIIPHIKE  230 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~  230 (268)
                      +..  ..+++.++++++.+
T Consensus       159 ~~~--~~~dip~li~~~~~  175 (176)
T d1d1ta2         159 GLK--SRDDVPKLVTEFLA  175 (176)
T ss_dssp             GCC--HHHHHHHHHHHHTT
T ss_pred             CCC--cHHHHHHHHHHHhC
Confidence            532  25677777776554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=5.9e-23  Score=153.93  Aligned_cols=167  Identities=19%  Similarity=0.188  Sum_probs=135.2

Q ss_pred             hhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCh
Q 024411           57 TGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEE  135 (268)
Q Consensus        57 ~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~  135 (268)
                      .++|...+.|||+++ +.+++++|++|||+|+ |++|++++++++.+|+ +|++++.++++.+.++ ++|+++++++.++
T Consensus         4 ~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~~   80 (195)
T d1kola2           4 LTCLSDILPTGYHGA-VTAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFEIADLSLDT   80 (195)
T ss_dssp             HGGGGTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCEEEETTSSS
T ss_pred             HHhcccHHHHHHHHH-HHhCCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hccccEEEeCCCc
Confidence            678899999999998 5689999999999997 9999999999999998 8999999999999999 9999999998887


Q ss_pred             hhHHHHHHHHCCC-CccEEEeCCCh----------------hhHHhHHHhhhcCCEEEEEcccccccC-------CCCcc
Q 024411          136 ADLNAALKRYFPE-GIDIYFENVGG----------------KLLDAVLPNMKIRGRIAACGMISQYNL-------DKPEG  191 (268)
Q Consensus       136 ~~~~~~~~~~~~~-~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g~~~~~~~-------~~~~~  191 (268)
                       ++.+.+.+.+++ ++|++||++|.                +.++.++++++++|+++.+|...+...       .....
T Consensus        81 -~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          81 -PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             -CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             -CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence             899999999888 99999999984                478999999999999999997543211       01122


Q ss_pred             ccchHHHHhcceeeeeEEecccccchHHHHHHHHHHHHcCC
Q 024411          192 VHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGK  232 (268)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (268)
                      ...+..++.+++++.+   +..  ..+..++++++++.+++
T Consensus       160 ~~~~~~~~~k~~~i~~---g~~--~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHT---GQT--PVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEE---SSC--CHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceecc---CCC--chHHHHHHHHHHHHcCC
Confidence            3445566778887653   111  23555777888877654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.7e-16  Score=96.84  Aligned_cols=70  Identities=26%  Similarity=0.367  Sum_probs=63.4

Q ss_pred             hhhhccchHHHHHHHhhh---hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 024411           56 YTGILGMPGMTAYVGFYE---VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        56 ~~a~l~~~~~~a~~~l~~---~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~  126 (268)
                      +++++++++.|||.+++.   ....+++++|||+||+|++|.+++|+++.+|++|+++++++++.++++ ++|+
T Consensus         5 eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~-~lGA   77 (77)
T d1o8ca2           5 KAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGA   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTE
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-HCCC
Confidence            488999999999988754   355689999999999999999999999999999999999999999998 8874

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=108.82  Aligned_cols=81  Identities=17%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKH   79 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~   79 (268)
                      .|++|+|+++|+++++|++||||++.    |+|+||++++.+.++++ |++++.. ++|+++....|+++++...++...
T Consensus        66 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~i-P~~ls~~-~Aa~~~~~~~ta~~~~~~~g~~~~  143 (150)
T d1yb5a1          66 SDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKL-PEKLKPV-IGSQYPLEKVAEAHENIIHGSGAT  143 (150)
T ss_dssp             SCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEEC-CTTCCCC-EEEEEEGGGHHHHHHHHHHSSCCS
T ss_pred             cceeeeeEeecceeeccccCccccccccccccccccccccccccccc-cCCCCHH-HHHHhhhhhhhehhhheEEcCccc
Confidence            58899999999999999999999986    79999999999999999 9995554 378899999999999989999999


Q ss_pred             CcEEEEe
Q 024411           80 GECVFIS   86 (268)
Q Consensus        80 ~~~vlI~   86 (268)
                      |+++||+
T Consensus       144 G~~vliL  150 (150)
T d1yb5a1         144 GKMILLL  150 (150)
T ss_dssp             SEEEEEC
T ss_pred             CCEEEEC
Confidence            9999874

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.54  E-value=1.3e-15  Score=112.20  Aligned_cols=82  Identities=13%  Similarity=0.090  Sum_probs=71.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|+++++|++||||...                               |+|+||++++++.++++ |++++
T Consensus        63 hE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~i-P~~~~  141 (178)
T d1e3ja1          63 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL-PDNCN  141 (178)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC-CTTCC
T ss_pred             cccceEEEecCcccCCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeC-CCCCC
Confidence            47799999999999999999999632                               68999999999999999 99855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecC
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAA   88 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga   88 (268)
                      .. +++++++++.|||+++ +.++++++++|+|+||
T Consensus       142 ~~-~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         142 VK-QLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CG-GGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HH-HHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            54 3778889999999998 5678999999999986

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.1e-15  Score=104.00  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhh-hhhccchHHHHHHHhhhhcCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYY-TGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~-~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      .|++|+|.++|+++++|++||||+..    |+|+||.+++.+.++++ |++++++.. +++++....++++++.+ .+++
T Consensus        62 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~~-P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~  139 (147)
T d1qora1          62 TEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAIL-PAAIKVDVAEQQKYPLKDAQRAHEILE-SRAT  139 (147)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEESCCSSCCSBSEEEEEGGGEEEC-CTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCC
T ss_pred             cccccceeeeeeecccccccceeeeeccccccceeEEEEehHHeEEc-CcccchHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            57899999999999999999999854    89999999999999999 998766543 45677888889888865 5799


Q ss_pred             CCcEEEE
Q 024411           79 HGECVFI   85 (268)
Q Consensus        79 ~~~~vlI   85 (268)
                      +|++|||
T Consensus       140 ~G~~VLI  146 (147)
T d1qora1         140 QGSSLLI  146 (147)
T ss_dssp             CBCCEEE
T ss_pred             CCCEEEe
Confidence            9999997

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.44  E-value=9.5e-14  Score=101.13  Aligned_cols=78  Identities=17%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|++++++++||||...                              |+|+||++++.+.++++ |+++++
T Consensus        63 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~~  141 (171)
T d1h2ba1          63 HENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKL-PKDVRV  141 (171)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEEC-CTTCCC
T ss_pred             eeeeeeeecccCCCCcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceec-CCCCCH
Confidence            56799999999999999999999752                              68999999999999999 998555


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEE
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFI   85 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI   85 (268)
                      + .++++.++..|||+++. .+.+ .|++|||
T Consensus       142 e-~aa~~~~~~~ta~~al~-~~~~-~G~~VlI  170 (171)
T d1h2ba1         142 E-VDIHKLDEINDVLERLE-KGEV-LGRAVLI  170 (171)
T ss_dssp             C-EEEEEGGGHHHHHHHHH-TTCC-SSEEEEE
T ss_pred             H-HHHHHHhHHHHHHHHHH-hcCC-CCCEEEe
Confidence            3 36788899999999995 4677 8999997

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.40  E-value=2e-13  Score=101.90  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|.++|+++++|++||||...                                                   |+|
T Consensus        68 hE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggf  147 (199)
T d1cdoa1          68 HEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTF  147 (199)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCS
T ss_pred             cccceEEEEEcCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCc
Confidence            46789999999999999999999542                                                   679


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFIS   86 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~   86 (268)
                      +||++++.+.++++ |++++.+ +++++.+++.|+++++......+.|++|||+
T Consensus       148 aey~~v~~~~~~~i-P~~~~~~-~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         148 SQYTVVNQIAVAKI-DPSVKLD-EFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             BSEEEEEGGGEEEC-CTTSCCG-GGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEEEchHHEEEC-CCCCCHH-HHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999 9986554 4789999999999999888888999999984

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.38  E-value=4.7e-13  Score=95.46  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=65.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhh
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEV   74 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~   74 (268)
                      .|++|+|.+  ++++.|++||+|+..         |+|+||+.++.+.++++ |++  +++++|+++++..||+.++...
T Consensus        66 ~e~~G~v~~--~~~~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~i-P~~--l~~~aa~l~~a~~ta~~~~~~~  140 (152)
T d1xa0a1          66 IDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPL-PKG--LERIAQEISLAELPQALKRILR  140 (152)
T ss_dssp             SEEEEEEEE--CCSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEEC-CTT--HHHHEEEEEGGGHHHHHHHHHH
T ss_pred             eeeeeeeec--cCCCccccCCEEEEecCccccccCCCcceeeeehhhccccC-CCC--CCHHHHHHHHHHHHHHHHHHHh
Confidence            455665555  667889999999865         79999999999999999 998  6656788999999999998888


Q ss_pred             cCCCCCcEEEEec
Q 024411           75 CSPKHGECVFISA   87 (268)
Q Consensus        75 ~~~~~~~~vlI~g   87 (268)
                      ++++ |++||++|
T Consensus       141 ~~~~-G~tVL~l~  152 (152)
T d1xa0a1         141 GELR-GRTVVRLA  152 (152)
T ss_dssp             TCCC-SEEEEECC
T ss_pred             cCCC-CCEEEEcC
Confidence            8875 99999975

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.32  E-value=3e-12  Score=93.54  Aligned_cols=79  Identities=16%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++++++++||||+..                               |+|+||+++++++++++ |++++
T Consensus        66 hE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~i-Pd~l~  144 (175)
T d1llua1          66 HEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGIL-PKNVK  144 (175)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEEC-CTTCC
T ss_pred             CcceEEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEEC-CCCCC
Confidence            57799999999999999999999742                               58999999999999999 99855


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEe
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFIS   86 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~   86 (268)
                      .. .++++.+++.+++++++ . ...+|++|||+
T Consensus       145 ~~-~a~~~~~~~~t~~~~~~-~-g~~~G~~VLVl  175 (175)
T d1llua1         145 AT-IHPGKLDDINQILDQMR-A-GQIEGRIVLEM  175 (175)
T ss_dssp             CC-EEEECGGGHHHHHHHHH-T-TCCSSEEEEEC
T ss_pred             hh-HHHHHHhHHHHHHHHHH-h-CCCCCCEEEeC
Confidence            43 26667788899998873 3 34579999985

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.31  E-value=3.1e-15  Score=109.91  Aligned_cols=91  Identities=14%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhh-hcCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYE-VCSPK   78 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~-~~~~~   78 (268)
                      .+++|+|.++|.+++.++.||+|+..    |+|+||++++++.++++ |++  ++. +++++...+|||+++.. ..+++
T Consensus        78 ~e~~g~V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~i-P~~--~~~-~~a~~~~~~ta~~~l~~~~~~~~  153 (175)
T d1gu7a1          78 NEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL-PNP--AQS-KANGKPNGLTDAKSIETLYDGTK  153 (175)
T ss_dssp             SCCEEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEE-CCH--HHH-HHTTCSCCCCCCCCEEEECCSSS
T ss_pred             cccccccccccccccccccccceeccccccccccceeeehhhhccCC-Ccc--chh-hhhccchHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999876    79999999999999999 887  553 44556677899988754 46799


Q ss_pred             CCcEEEEec-CcchHHHHHHH
Q 024411           79 HGECVFISA-ASGAVGQLVGQ   98 (268)
Q Consensus        79 ~~~~vlI~g-a~g~~G~~~i~   98 (268)
                      +++++||+| |+|++|++++|
T Consensus       154 ~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         154 PLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             CHHHHHHHHHHTGGGSCEEEE
T ss_pred             CCCEEEEECccchhhhheEEe
Confidence            999999998 55789988776

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-12  Score=95.71  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=63.4

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|+++++|++||||+..                               |+|+||++++.++++++ |+++ 
T Consensus        69 hE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~l-P~~~-  146 (185)
T d1pl8a1          69 HEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKL-PDNV-  146 (185)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEEC-CTTC-
T ss_pred             eeeeeeEEEeccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEEC-CCCC-
Confidence            57789999999999999999999742                               56999999999999999 9984 


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcc
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASG   90 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g   90 (268)
                       +.+.+++ .+..+|++++. ..++++|++|||..+.|
T Consensus       147 -~~~~aa~-~pl~~a~~a~~-~~~~~~G~~VlIg~GP~  181 (185)
T d1pl8a1         147 -KPLVTHR-FPLEKALEAFE-TFKKGLGLKIMLKCDPS  181 (185)
T ss_dssp             -GGGEEEE-EEGGGHHHHHH-HHHTTCCSEEEEECCTT
T ss_pred             -CHHHHHH-HHHHHHHHHHH-HhCCCCCCEEEEEeCCC
Confidence             4343322 34556777774 45789999999954433

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.26  E-value=5.7e-12  Score=91.70  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec-------------------------------cccceeEeecCCcceeecCCCCC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM-------------------------------TGWEEYSLITAPHLFKIQHTDVP   52 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~-------------------------------g~~~~~~~v~~~~~~~~~p~~~~   52 (268)
                      -|++|+|+++|++++++++||||+..                               |+|+||+++++++++++ |++++
T Consensus        61 hE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i-P~~~~  139 (171)
T d1rjwa1          61 HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKI-PDNTI  139 (171)
T ss_dssp             SCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEEC-CTTCC
T ss_pred             CEEEEEEEEecccccCceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEEC-CCCCC
Confidence            47899999999999999999999631                               68999999999999999 99854


Q ss_pred             chhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecC
Q 024411           53 LSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAA   88 (268)
Q Consensus        53 ~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga   88 (268)
                      +  ++|++. ...++++++.. +.+ +|++|||+|-
T Consensus       140 ~--e~A~l~-~~~~~~~~~~~-~~~-~G~tVlViG~  170 (171)
T d1rjwa1         140 I--EVQPLE-KINEVFDRMLK-GQI-NGRVVLTLED  170 (171)
T ss_dssp             E--EEEEGG-GHHHHHHHHHT-TCC-SSEEEEECCC
T ss_pred             H--HHHHHH-HHHHHHHHHHh-cCC-CCCEEEEeCC
Confidence            4  455553 45677777643 444 5999999983

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=3.4e-12  Score=94.27  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             CccceEEEEecCCC-CCCCCCCeEEe-----------------------------------c---cccceeEeecCCcce
Q 024411            4 ISGYGVAKVLDSEN-PEFNKGDLVWG-----------------------------------M---TGWEEYSLITAPHLF   44 (268)
Q Consensus         4 ~~~~G~v~~vG~~v-~~~~~Gd~V~~-----------------------------------~---g~~~~~~~v~~~~~~   44 (268)
                      -|++|+|+++|+++ +.+++||||..                                   +   |+|+||++++++.++
T Consensus        68 HE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~  147 (192)
T d1piwa1          68 HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVV  147 (192)
T ss_dssp             CCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEE
T ss_pred             cccccchhhcccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeE
Confidence            46789999999988 56999999941                                   1   689999999999999


Q ss_pred             eecCCCCCchhhhhhccch-HHHHHHHhhhhcCCCCCcEEEEec
Q 024411           45 KIQHTDVPLSYYTGILGMP-GMTAYVGFYEVCSPKHGECVFISA   87 (268)
Q Consensus        45 ~~~p~~~~~~~~~a~l~~~-~~~a~~~l~~~~~~~~~~~vlI~g   87 (268)
                      ++ |++++.  +.|++.++ +.+||+++ ..++++++++|++..
T Consensus       148 ~i-P~~l~~--e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~~  187 (192)
T d1piwa1         148 PI-PENIWV--ETLPVGEAGVHEAFERM-EKGDVRYRFTLVGYD  187 (192)
T ss_dssp             EC-CTTCCE--EEEESSHHHHHHHHHHH-HHTCCSSEEEEECCH
T ss_pred             EC-CCCCCH--HHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEC
Confidence            99 999554  44556555 67999999 468999999999863

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.20  E-value=9.5e-12  Score=92.34  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      .|++|+|.++|++|+.+++||+|...                                                   |+|
T Consensus        66 hE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~Ggf  145 (197)
T d2fzwa1          66 HLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTF  145 (197)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCS
T ss_pred             cceeeEEEeecCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccc
Confidence            56789999999999999999999631                                                   589


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFIS   86 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~   86 (268)
                      +||+++++++++++ |++++++ +++++.+++.+++.++.....-+.+++|+|+
T Consensus       146 Aey~vvp~~~~~~v-p~~l~~~-~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         146 SEYTVVADISVAKI-DPLIKVD-EFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             BSEEEEEGGGEEEC-CTTSCSG-GGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eeEEEechHHEEEC-CCCCCHH-HHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            99999999999999 8886655 4778999999999998666556788888874

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.2e-11  Score=85.42  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             CCCccceEEEEecCCCCCCCCCCeEEec---cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCC
Q 024411            2 QPISGYGVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPK   78 (268)
Q Consensus         2 ~~~~~~G~v~~vG~~v~~~~~Gd~V~~~---g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~   78 (268)
                      |.++|...+.+|        +||+|+++   |+|+||++++++.++++ |++++.. ++|++++.+.|||++|.+.+  +
T Consensus        56 P~v~G~E~~G~V--------vGd~V~~~~~~G~~aey~~v~~~~~~~~-P~~~~~~-~aa~~~~~~~Ta~~al~~~g--~  123 (131)
T d1iz0a1          56 PFIPGMEVVGVV--------EGRRYAALVPQGGLAERVAVPKGALLPL-PEGRPVV-GPVFPFAEAEAAFRALLDRG--H  123 (131)
T ss_dssp             SBCCCCEEEEEE--------TTEEEEEECSSCCSBSEEEEEGGGCEEC-CTTCCCE-EEEEEGGGHHHHHHHTTCTT--C
T ss_pred             eeEeeeeeEEee--------ccceEEEEeccCccceeeeeCHHHeEEc-cCCCCHH-HHHHHHHHHHHHHHHHHhcc--c
Confidence            345565555555        49999988   89999999999999999 9985554 37888999999999997665  5


Q ss_pred             CCcEEEEe
Q 024411           79 HGECVFIS   86 (268)
Q Consensus        79 ~~~~vlI~   86 (268)
                      .+++||++
T Consensus       124 ~g~tvl~l  131 (131)
T d1iz0a1         124 TGKVVVRL  131 (131)
T ss_dssp             CBEEEEEC
T ss_pred             CCCEEEEC
Confidence            69988864

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.15  E-value=8e-11  Score=87.00  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec----------------------------------------------------cc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------------------TG   31 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------------------g~   31 (268)
                      -|++|+|+++|++|++|++||||...                                                    |+
T Consensus        62 HE~~G~V~~vG~~v~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~  141 (194)
T d1f8fa1          62 HEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSS  141 (194)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCC
T ss_pred             cceEEEeeecCccceeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccc
Confidence            46789999999999999999999641                                                    46


Q ss_pred             cceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEE
Q 024411           32 WEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGS  110 (268)
Q Consensus        32 ~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~  110 (268)
                      |+||+++++.+++++ |++++.+                          +.+++.| .|++|++++|+++.+|++.++.
T Consensus       142 fae~~~v~~~~~~~i-p~~i~~~--------------------------~~~~i~g-~g~~g~~aiq~a~~~g~~~iia  192 (194)
T d1f8fa1         142 FATYALSRENNTVKV-TKDFPFD--------------------------QLVKFYA-FDEINQAAIDSRKGITLKPIIK  192 (194)
T ss_dssp             SBSEEEEEGGGEEEE-CTTCCGG--------------------------GGEEEEE-GGGHHHHHHHHHHTSCSEEEEE
T ss_pred             cceeEEEehHHEEEC-CCCCCcc--------------------------cEEEEeC-cHHHHHHHHHHHHHcCCCEEEE
Confidence            788888888888888 7763332                          2244555 5999999999999999965443

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.12  E-value=4.7e-14  Score=105.17  Aligned_cols=93  Identities=18%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec----------------------------------------cccceeEeecCC--c
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM----------------------------------------TGWEEYSLITAP--H   42 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~----------------------------------------g~~~~~~~v~~~--~   42 (268)
                      |++|+|+++|++|++|++||||...                                        |+|+||++++..  .
T Consensus        67 E~~G~Vv~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~  146 (201)
T d1kola1          67 EITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFN  146 (201)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHH
T ss_pred             eeeeeeeccccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCe
Confidence            5699999999999999999999521                                        689999999864  4


Q ss_pred             ceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC
Q 024411           43 LFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC  105 (268)
Q Consensus        43 ~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~  105 (268)
                      ++++ |++. ++.+++++.++..++++++.. ...+.++    +|+ |++|++++|.||.+|+
T Consensus       147 l~~i-Pd~~-~~~~~~~~~~~~~~~~~a~~~-~~~~~g~----~g~-G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         147 LLKL-PDRD-KAMEKINIAEVVGVQVISLDD-APRGYGE----FDA-GVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CEEC-SCHH-HHHHTCCHHHHHTEEEECGGG-HHHHHHH----HHH-TCSCEEEECTTCSSCC
T ss_pred             EEEC-CCCC-ChHHHHHHHHHHHHHHHHHHh-CCCCCeE----Eee-CHHHHHHHHHHHHcCC
Confidence            8999 8762 232356677777777777743 3333343    465 9999999999998885

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.08  E-value=3.5e-11  Score=89.79  Aligned_cols=79  Identities=14%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------------------------------
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------------------------------   29 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------------------------------   29 (268)
                      -|++|+|.++|++|+++++||||++.                                                      
T Consensus        67 HE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~  146 (202)
T d1e3ia1          67 HECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMG  146 (202)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTT
T ss_pred             cccceEEeeecCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccc
Confidence            46789999999999999999999642                                                      


Q ss_pred             -cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEec
Q 024411           30 -TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA   87 (268)
Q Consensus        30 -g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~g   87 (268)
                       |+|+||+++++..++++ |++++++ .++++.+++.++++++..   +++|++|.|+.
T Consensus       147 ~G~faey~~v~~~~l~~l-P~~~~~~-~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         147 VSSFSQYTVVSEANLARV-DDEFDLD-LLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             TCCSBSEEEEEGGGEEEC-CTTSCGG-GGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             cCCceEEEEEehhhEEEC-CCCCCHH-HHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence             67999999999999999 9986655 367888888888888843   46788887653

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.08  E-value=2.2e-10  Score=80.33  Aligned_cols=81  Identities=25%  Similarity=0.378  Sum_probs=62.7

Q ss_pred             CCCccceEEEEecCCCCCCCCCCeEEeccccceeEeecCCcceeecCCCCCc----hhhhhhccchHHHH-HHHhhhhcC
Q 024411            2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPL----SYYTGILGMPGMTA-YVGFYEVCS   76 (268)
Q Consensus         2 ~~~~~~G~v~~vG~~v~~~~~Gd~V~~~g~~~~~~~v~~~~~~~~~p~~~~~----~~~~a~l~~~~~~a-~~~l~~~~~   76 (268)
                      .+++|.|+.+++++++++|++||+|+++++|+||.+++.+.+.++ |...+.    ....+++...++|| |..+.  ..
T Consensus        61 ~~~~g~~vg~Vv~S~~~~f~~GD~V~g~~gw~ey~v~~~~~l~kv-~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~  137 (147)
T d1v3va1          61 AVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKL-LTEWPDKKIQYHEHVTKGFENMPAAFIEML--NG  137 (147)
T ss_dssp             SBCCCCEEEEEEEESCTTSCTTCEEEECCCSBSEEEECSSSCEEC-CTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TT
T ss_pred             CccccceEEEEEEeCCCcccCCCEEEEccCCEeEEEeccceeeEc-cccccccccchhhhHhccccchHHHHHHhh--CC
Confidence            357888888889999999999999999999999999999999999 543221    11245677788874 54554  34


Q ss_pred             CCCCcEEEE
Q 024411           77 PKHGECVFI   85 (268)
Q Consensus        77 ~~~~~~vlI   85 (268)
                      .+.|++|++
T Consensus       138 ~k~Getvv~  146 (147)
T d1v3va1         138 ANLGKAVVT  146 (147)
T ss_dssp             CCSSEEEEE
T ss_pred             CCCCCEEEe
Confidence            577999986

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.04  E-value=3.2e-10  Score=82.69  Aligned_cols=79  Identities=18%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec------------------------------cccceeEeecCCcceeecCCCCCc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM------------------------------TGWEEYSLITAPHLFKIQHTDVPL   53 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------g~~~~~~~v~~~~~~~~~p~~~~~   53 (268)
                      -|++|+|+++|+++++|++||+|+..                              |+|+||++++.++++..+|+..+.
T Consensus        68 hE~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~  147 (177)
T d1jvba1          68 HEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPM  147 (177)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCC
T ss_pred             ceEEEEEeeeccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChH
Confidence            56789999999999999999999642                              689999999887755442654222


Q ss_pred             hhhhhhccchHHHHHHHhhhhcCCCCCcEEEE
Q 024411           54 SYYTGILGMPGMTAYVGFYEVCSPKHGECVFI   85 (268)
Q Consensus        54 ~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI   85 (268)
                      . .++.+..+..++++++. ..++ .|++|||
T Consensus       148 ~-~a~~~~~~~~~a~~~~~-~~~~-~G~~VlI  176 (177)
T d1jvba1         148 I-TKTMKLEEANEAIDNLE-NFKA-IGRQVLI  176 (177)
T ss_dssp             C-EEEEEGGGHHHHHHHHH-TTCC-CSEEEEE
T ss_pred             H-HHHHHHHHHHHHHHHHH-hhcc-cCCceEC
Confidence            2 23444678889999984 4455 5888887

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=1.4e-12  Score=93.92  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=65.6

Q ss_pred             ccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhc
Q 024411            5 SGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVC   75 (268)
Q Consensus         5 ~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~   75 (268)
                      +++|+|.+  +.++++++||+|+..         |+|+||++++++.++++ |++++.. +||+++..++|||.++.. .
T Consensus        67 e~~G~v~~--~~~~~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~i-P~~ls~~-~Aa~~~~~~~ta~~~~~~-~  141 (162)
T d1tt7a1          67 DAAGTVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPL-PQNLSLK-EAMVDQLLTIVDREVSLE-E  141 (162)
T ss_dssp             EEEEEEEE--CSSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEEC-CTTCCHH-HHHHSCSTTSEEEEECST-T
T ss_pred             eccccccc--ccccccccceeeEeeeccceeccccccceEEEecHHHEEEC-CCCCCHH-HHHHHHHHHHHHHHHHHh-c
Confidence            34454444  677889999999764         79999999999999999 9996555 388999999999988754 3


Q ss_pred             CCCCCcEEEEecCcchH
Q 024411           76 SPKHGECVFISAASGAV   92 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~   92 (268)
                      +...+++|||+|++|++
T Consensus       142 ~~~~~~~Vli~ga~G~v  158 (162)
T d1tt7a1         142 TPGALKDILQNRIQGRV  158 (162)
T ss_dssp             HHHHHHHTTTTCCSSEE
T ss_pred             CCCCCCEEEEECCcceE
Confidence            45666889999987753

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=6.2e-10  Score=78.17  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             CCccceEEEEecCCCCCCCCCCeEEec---------cccceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhh
Q 024411            3 PISGYGVAKVLDSENPEFNKGDLVWGM---------TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFY   72 (268)
Q Consensus         3 ~~~~~G~v~~vG~~v~~~~~Gd~V~~~---------g~~~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~   72 (268)
                      ..|++|+|.++|.  +.+++||+|+..         |+|+||+++++++++++ |+++++. ++|++++++.||+.++.
T Consensus        62 G~e~~G~V~~~~~--~~~~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~l-P~~ls~~-eAA~l~~a~~tA~~~~~  136 (146)
T d1o89a1          62 GIDFAGTVRTSED--PRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAM-PQGQAAK-EISLSEAPNFAEAIINN  136 (146)
T ss_dssp             CSEEEEEEEEECS--TTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEEC-CTTSCCE-EECGGGHHHHHHHHHTT
T ss_pred             cccccccceeecc--CCccceeeEEeecccceecCCCcceeeeeeeeeeEEEC-CCCCCHH-HHHHHHHHHHHHHHHHH
Confidence            3577888888765  479999999864         89999999999999999 9996555 48888888889876663

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=1.9e-09  Score=78.60  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             CccceEEEEecCCCC-----CCCCCCeEEe---------------------------------------ccccceeEeec
Q 024411            4 ISGYGVAKVLDSENP-----EFNKGDLVWG---------------------------------------MTGWEEYSLIT   39 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~-----~~~~Gd~V~~---------------------------------------~g~~~~~~~v~   39 (268)
                      -|++|+|+++|++|+     .+++||+|+.                                       .|+|+||++++
T Consensus        64 HE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~  143 (184)
T d1vj0a1          64 HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLD  143 (184)
T ss_dssp             CEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEEC
T ss_pred             eeeeeeeeEEeccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEec
Confidence            366899999999886     4689999963                                       16899999996


Q ss_pred             -CCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEec
Q 024411           40 -APHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA   87 (268)
Q Consensus        40 -~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~g   87 (268)
                       +..++++ |++++..       .+..+|++++ ..+.+++|++|+|+.
T Consensus       144 ~~~~v~~i-p~~l~~~-------~pl~~A~~a~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         144 PETDVLKV-SEKITHR-------LPLKEANKAL-ELMESREALKVILYP  183 (184)
T ss_dssp             TTCCEEEE-CTTCCEE-------EEGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred             hhHcEEEC-CCCCCHH-------HHHHHHHHHH-HHhCCCcCCEEEEee
Confidence             4679999 8884432       1345678887 456899999999984

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.69  E-value=9.3e-09  Score=76.06  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      -|++|+|.++|++++++++||||...                                                   |+|
T Consensus        67 HE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~f  146 (198)
T d2jhfa1          67 HEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTF  146 (198)
T ss_dssp             CSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCS
T ss_pred             cceeEEEEecCccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcc
Confidence            47799999999999999999999531                                                   579


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEe
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFIS   86 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~   86 (268)
                      +||+++++.+++++ |++++++. +++...+........   ..+++|++|.|+
T Consensus       147 AEy~~v~~~~~~~~-p~~~~~e~-l~~~~~~~~~v~~g~---~~l~~G~~VaVi  195 (198)
T d2jhfa1         147 SQYTVVDEISVAKI-DAAFALDP-LITHVLPFEKINEGF---DLLRSGESIRTI  195 (198)
T ss_dssp             BSEEEEEGGGEEEC-CTTSCCGG-GEEEEEEGGGHHHHH---HHHHTTCCSEEE
T ss_pred             cCeEEeCHHHeEEC-CCCCCHHH-HHHHHHHHHhhhhCC---ceeeCCCEEEEE
Confidence            99999999999999 88866653 333333332222221   235678888775

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=3.6e-08  Score=71.39  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEe---------------------------------------ccccceeEeecCCcce
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWG---------------------------------------MTGWEEYSLITAPHLF   44 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~---------------------------------------~g~~~~~~~v~~~~~~   44 (268)
                      -|++|+|+++|++|+++++||+|..                                       .|+|+||+++++++++
T Consensus        60 hE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~  139 (179)
T d1uufa1          60 HEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVL  139 (179)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCE
T ss_pred             ccccccchhhccccccCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEE
Confidence            4679999999999999999999941                                       1679999999999999


Q ss_pred             eecCCCCCchhhhhhccchHHHHHHHhh
Q 024411           45 KIQHTDVPLSYYTGILGMPGMTAYVGFY   72 (268)
Q Consensus        45 ~~~p~~~~~~~~~a~l~~~~~~a~~~l~   72 (268)
                      ++ |++  ..  .+.+..+..++++++.
T Consensus       140 ~i-p~~--~~--~~~~a~~l~~a~~a~~  162 (179)
T d1uufa1         140 RI-RVA--DI--EMIRADQINEAYERML  162 (179)
T ss_dssp             EC-CCC--CE--EEECGGGHHHHHHHHH
T ss_pred             EC-CCC--Cc--ChhHhchhHHHHHHHH
Confidence            99 644  21  1223345677888874

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.62  E-value=1.7e-08  Score=72.98  Aligned_cols=50  Identities=28%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------cccceeEeecCC--cceeecC
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------TGWEEYSLITAP--HLFKIQH   48 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------g~~~~~~~v~~~--~~~~~~p   48 (268)
                      -|++|+|+++|+++++|++||||...                                 |+|+||++++..  .++++ |
T Consensus        59 hE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~i-P  137 (177)
T d1jqba1          59 HEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAIL-P  137 (177)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEEC-C
T ss_pred             ceeeEEeeecccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEEC-C
Confidence            37799999999999999999999621                                 789999999874  58999 8


Q ss_pred             CCCCch
Q 024411           49 TDVPLS   54 (268)
Q Consensus        49 ~~~~~~   54 (268)
                      ++++..
T Consensus       138 ~~~~~~  143 (177)
T d1jqba1         138 KDVDLS  143 (177)
T ss_dssp             TTSCGG
T ss_pred             CCcchH
Confidence            885543

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.57  E-value=6e-09  Score=76.97  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             CccceEEEEecCCCCCCCCCCeEEec---------------------------------------------------ccc
Q 024411            4 ISGYGVAKVLDSENPEFNKGDLVWGM---------------------------------------------------TGW   32 (268)
Q Consensus         4 ~~~~G~v~~vG~~v~~~~~Gd~V~~~---------------------------------------------------g~~   32 (268)
                      =|++|+|+++|++++++++||||...                                                   |+|
T Consensus        67 HE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~f  146 (198)
T d1p0fa1          67 HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTF  146 (198)
T ss_dssp             CCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCS
T ss_pred             eeeeeeeeecCcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccc
Confidence            36789999999999999999999631                                                   468


Q ss_pred             ceeEeecCCcceeecCCCCCchhhhhhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHH
Q 024411           33 EEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQ   94 (268)
Q Consensus        33 ~~~~~v~~~~~~~~~p~~~~~~~~~a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~   94 (268)
                      +||+++++..++++ |++++.+. .+...+...          .+.+++.++|.|+ |++|+
T Consensus       147 aey~~v~~~~~~ki-p~~~~~~~-~~~~~~~~~----------~v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         147 TEYTVVADIAVAKI-DPKINVNF-LVSTKLTLD----------QINKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             BSEEEEETTSEEEE-CTTSCGGG-GEEEEECGG----------GHHHHHHHTTTSS-CSEEE
T ss_pred             eeeEEecHHHEEEC-CCCCCHHH-HHHhhcchh----------hcCCCCEEEEECC-CcceE
Confidence            99999999999999 77755542 322222222          2333445777786 77764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=4.8e-07  Score=68.80  Aligned_cols=106  Identities=23%  Similarity=0.363  Sum_probs=75.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +|++++|+||++++|.++++.+...|++|+++++++++.+.+.++++..   ...|..+.++..+.+.+..  .|++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            5789999999999999999999999999999999999888877666653   2344444323333333322  2479999


Q ss_pred             EeCCChhh--------------------------HHhHHHhhh--cCCEEEEEcccccc
Q 024411          154 FENVGGKL--------------------------LDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      ++++|...                          .+.+++.+.  .+|+++.+++..+.
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~  141 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGT  141 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhc
Confidence            99887310                          344556664  36899999876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.42  E-value=1.5e-06  Score=66.46  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee---eecCChhhHHHHHHHHC--CCCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA---FNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      +|+.+||+||++++|.++++.+...|++|+++++++++.+.+.++++....   .|..+.++....+.+..  .|.+|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            578999999999999999999999999999999999988887767776432   23333323333333222  1479999


Q ss_pred             EeCCChh--------------------------hHHhHHHhhh-cCCEEEEEcccccc
Q 024411          154 FENVGGK--------------------------LLDAVLPNMK-IRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~~~  184 (268)
                      ++++|..                          ..+.+++.|+ .+|++|.+++..+.
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence            9998841                          0344555665 47999999876553

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=1.4e-06  Score=66.15  Aligned_cols=106  Identities=19%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..++++..+.+++...  +++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            57899999999999999999999999999999999998888775665432   2344443233333333221  369999


Q ss_pred             EeCCChhh--------------------------HHhHHHhhh--cCCEEEEEcccccc
Q 024411          154 FENVGGKL--------------------------LDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      ++++|...                          .+.+.+.+.  .+|++|.+++..+.
T Consensus        85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  143 (244)
T d1nffa_          85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL  143 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc
Confidence            99987410                          223444444  36899999876654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.41  E-value=1.4e-06  Score=66.59  Aligned_cols=106  Identities=19%  Similarity=0.208  Sum_probs=74.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..++++..+.+.+...  |.+|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            57899999999999999999999999999999999998887765766432   2344443233333332211  479999


Q ss_pred             EeCCChhh--------------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          154 FENVGGKL--------------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       154 ~d~~g~~~--------------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      ++++|...                          .+.+++.+..  +|++|.+++..+.
T Consensus        84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~  142 (254)
T d1hdca_          84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL  142 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc
Confidence            99987310                          2334444443  6899999876654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.9e-06  Score=65.63  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=74.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCC--CCccEEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFP--EGIDIYF  154 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~--~~~d~v~  154 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...  ..|..+.++..+.+.+...  |++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            58899999999999999999999999999999999999888875555432  2344443233333333221  4799999


Q ss_pred             eCCCh-h---h-----------------------HHhHHHhhhc-CCEEEEEccccc
Q 024411          155 ENVGG-K---L-----------------------LDAVLPNMKI-RGRIAACGMISQ  183 (268)
Q Consensus       155 d~~g~-~---~-----------------------~~~~~~~l~~-~G~~v~~g~~~~  183 (268)
                      +++|. .   .                       .+.+++.|+. +|+++.+++..+
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~  141 (250)
T d1ydea1          85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG  141 (250)
T ss_dssp             ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH
T ss_pred             ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccc
Confidence            98873 1   0                       3345555554 589999987654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.6e-06  Score=66.01  Aligned_cols=105  Identities=13%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCC--CCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFP--EGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~--~~~d~v~d  155 (268)
                      +|+++||+||++++|.++++.+...|++|++.+++++..+.++ +.+... ..|..+.++..+.+.+...  |++|++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-AIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH-HHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            6899999999999999999999999999999999988777766 666542 3455543233333333221  47999999


Q ss_pred             CCChh--------------------------hHHhHHHhhhc--CCEEEEEcccccc
Q 024411          156 NVGGK--------------------------LLDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       156 ~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      ++|..                          ..+.+++.|+.  +|++|.++...+.
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~  139 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  139 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence            88731                          03445566654  5899999876553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.37  E-value=3.6e-06  Score=58.99  Aligned_cols=98  Identities=18%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +..+|+|+|+ |..|+.+++.|+.+|++|.+.+.+.++.+.+++.++.. .....+.. .+.+.+++     +|+++.++
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~-~l~~~~~~-----aDivI~aa  103 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSA-EIETAVAE-----ADLLIGAV  103 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHH-HHHHHHHT-----CSEEEECC
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhh-hHHHhhcc-----CcEEEEee
Confidence            3567999998 99999999999999999999999999999888444443 22222222 55555553     89999986


Q ss_pred             C---hh----hHHhHHHhhhcCCEEEEEccccc
Q 024411          158 G---GK----LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       158 g---~~----~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      =   .+    .-+..++.++|++.+|.+.-..+
T Consensus       104 lipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqG  136 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMRTGSVIVDVAVDQG  136 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             ecCCcccCeeecHHHHhhcCCCcEEEEeecCCC
Confidence            3   21    24789999999999999876443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=1.4e-06  Score=66.08  Aligned_cols=81  Identities=12%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCC--CCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFP--EGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~--~~~d~v~d  155 (268)
                      +++.+||+||++++|.++++.+...|++|+++++++++.+.+.++++... ..|..+.++..+.+.+...  |.+|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            57899999999999999999999999999999999999888875666542 3455554233333333221  46999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      ++|.
T Consensus        84 nAG~   87 (242)
T d1ulsa_          84 YAGI   87 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.30  E-value=3.2e-06  Score=64.81  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      +|+++||+||++++|.+++..+...|++|+++++++++.+.+.+++   |...   ..|..++++..+.+.+...  |.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5889999999999999999999999999999999998877665333   3321   2344443233333333221  479


Q ss_pred             cEEEeCCCh-hh--------------------------HHhHHHhh--hcCCEEEEEcccccc
Q 024411          151 DIYFENVGG-KL--------------------------LDAVLPNM--KIRGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~-~~--------------------------~~~~~~~l--~~~G~~v~~g~~~~~  184 (268)
                      |++++++|. ..                          .+.+++.+  +.+|++|.+++..+.
T Consensus        84 DilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~  146 (260)
T d1zema1          84 DFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGV  146 (260)
T ss_dssp             CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             CeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhc
Confidence            999998873 10                          23344444  347999999876543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=8.1e-06  Score=62.10  Aligned_cols=104  Identities=14%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----hcCCCe---eeecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN----KFGFDE---AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      +++++||+||++++|.++++.+...|++|+++++++++.+.+.+    +.|...   ..|..++++....+.+...  |+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999887654332    345432   2354444233333333221  47


Q ss_pred             ccEEEeCCCh-h-------------------------hHHhHHHhhhc--CCEEEEEcccc
Q 024411          150 IDIYFENVGG-K-------------------------LLDAVLPNMKI--RGRIAACGMIS  182 (268)
Q Consensus       150 ~d~v~d~~g~-~-------------------------~~~~~~~~l~~--~G~~v~~g~~~  182 (268)
                      +|++++++|. .                         ..+.+++.++.  +|+++.+++..
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~  144 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  144 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccch
Confidence            9999999874 1                         03445666644  58999997644

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.27  E-value=8e-06  Score=62.46  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCe---eeecCChhhHHH---HHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFDE---AFNYKEEADLNA---ALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~---~~~~~~~~~  149 (268)
                      +|+++||+||++++|.++++.+...|++|++.++++++.+.+.+++   +...   ..|..++++...   .+.+..++.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999999998876655343   3321   234444323333   333333447


Q ss_pred             ccEEEeCCChhh--------------------------HHhHHHhhh--cCCEEEEEcccccc
Q 024411          150 IDIYFENVGGKL--------------------------LDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       150 ~d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      +|++++++|...                          .+.+++.+.  .+|+++.+++..+.
T Consensus        87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  149 (259)
T d2ae2a_          87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA  149 (259)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT
T ss_pred             ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc
Confidence            999999987310                          233444554  36899999876553

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.27  E-value=4.5e-06  Score=60.84  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC----C-CeeeecCChhhHHHHHHHHCCCCcc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG----F-DEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      --++++++|+||+|++|..++..+...|++|++++++.++.+.+.+++.    . ....|..+.    +.+++.. +++|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~-~~iD   94 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD----ASRAEAV-KGAH   94 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH----HHHHHHT-TTCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccH----HHHHHHh-cCcC
Confidence            4578999999999999999999999999999999999988776653432    2 123444442    2233332 3599


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.7e-06  Score=63.11  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----Ce----eeecCChhhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF----DE----AFNYKEEADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~----~~----v~~~~~~~~~~~~~~~~~~--~  148 (268)
                      +|+.+||+||++++|.+++..+...|++|+++++++++.+.+.+++..    ..    ..|..+.++..+.+.+...  |
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999887766544421    11    2344443233333333221  4


Q ss_pred             CccEEEeCCChh---h---------------HHhHHHhhhc-----CCEEEEEcccccc
Q 024411          149 GIDIYFENVGGK---L---------------LDAVLPNMKI-----RGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~---~---------------~~~~~~~l~~-----~G~~v~~g~~~~~  184 (268)
                      ++|++++++|..   .               ...+++.+.+     +|++|.+++..+.
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~  140 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL  140 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc
Confidence            799999999841   1               2334445443     4789999876653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.9e-06  Score=63.65  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...  ..|..+. +-.+.+.+.. +.+|+++++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~-g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW-EATERALGSV-GPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-HHHHHHHTTC-CCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHHHHHh-CCceEEEec
Confidence            68999999999999999999999999999999999999888775665433  3455554 3333333322 479999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        84 Ag~   86 (244)
T d1pr9a_          84 AAV   86 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.7e-06  Score=63.73  Aligned_cols=105  Identities=22%  Similarity=0.266  Sum_probs=72.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-E--AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .|+.+||+||++|+|..++.-+...|++|+++++++++.+.+.++   .+.. .  ..|..+.++....+++..  .|.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999999999887765433   3332 1  335555423333333221  2469


Q ss_pred             cEEEeCCChhh--------------------------HHhHHHhhhc--CCEEEEEccccc
Q 024411          151 DIYFENVGGKL--------------------------LDAVLPNMKI--RGRIAACGMISQ  183 (268)
Q Consensus       151 d~v~d~~g~~~--------------------------~~~~~~~l~~--~G~~v~~g~~~~  183 (268)
                      |++++++|...                          .+..++.+..  .|++|.+++..+
T Consensus        86 dilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          86 SILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             SEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             ceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            99999987420                          2345555554  578998877553

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.24  E-value=6.1e-06  Score=62.44  Aligned_cols=81  Identities=9%  Similarity=0.118  Sum_probs=61.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      .|+++||+||++++|.++++-+...|++|+++.++.++.+.+.++++...   ..|..++++..+.+.+...  |++|++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            57899999999999999999999999999999999998888776777642   2344444244433333322  469999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        84 innAg~   89 (241)
T d2a4ka1          84 AHFAGV   89 (241)
T ss_dssp             EEGGGG
T ss_pred             cccccc
Confidence            998864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.24  E-value=2.4e-06  Score=65.38  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..++++..+.+.+...  |.+|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            57899999999999999999999999999999999998887776887643   2355554233333333221  479999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      ++++|.
T Consensus        84 VnnAg~   89 (256)
T d1k2wa_          84 VNNAAL   89 (256)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            999873

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.8e-06  Score=63.68  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=57.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC-Cee----eecCChhhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF-DEA----FNYKEEADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~-~~v----~~~~~~~~~~~~~~~~~~--~  148 (268)
                      +++.+||+||++++|.+++..+...|++|+++.+++++.+.+.+++   +. ..+    .|..++++..+.+.+...  |
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999998877654333   32 222    244443233333333221  4


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      ++|++++++|.
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            69999999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.23  E-value=5.9e-06  Score=63.19  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC---eeeecCChhhHHH---HHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD---EAFNYKEEADLNA---ALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~---~~~~~~~~~  149 (268)
                      +++++||+||++++|.+++..+...|++|+++++++++.+.+.+++   +..   ...|..+.++...   .+.+..+|.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999998876654333   222   1234444323333   333333457


Q ss_pred             ccEEEeCCChhh--------------------------HHhHHHhhh--cCCEEEEEccccc
Q 024411          150 IDIYFENVGGKL--------------------------LDAVLPNMK--IRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~~  183 (268)
                      +|++++++|...                          .+.+++.++  .+|+++.+++..+
T Consensus        87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  148 (259)
T d1xq1a_          87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAG  148 (259)
T ss_dssp             CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----
T ss_pred             cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccc
Confidence            999999987410                          234455554  3689999887554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=6.1e-06  Score=62.46  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...  ..|..+. +..+.+.+.. |++|+++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~-~~v~~~~~~~-g~iDilVnn   81 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW-DATEKALGGI-GPVDLLVNN   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-HHHHHHHTTC-CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHHHHHc-CCCeEEEEC
Confidence            57899999999999999999999999999999999998877765665432  3455554 3333333322 479999999


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        82 Ag~   84 (242)
T d1cyda_          82 AAL   84 (242)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            873

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.20  E-value=5.2e-06  Score=63.24  Aligned_cols=106  Identities=15%  Similarity=0.298  Sum_probs=72.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~  150 (268)
                      .++.+||+||++++|.+++..+...|++|+++++++++.+.+.++   .+...   ..|..++++..+.+.+..  .|.+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            478899999999999999999999999999999998877665433   33321   234444423333333321  2479


Q ss_pred             cEEEeCCChhh--------------------------HHhHHHhhh--cCCEEEEEcccccc
Q 024411          151 DIYFENVGGKL--------------------------LDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      |++++++|...                          .+.+++.+.  .+|++|.+++..+.
T Consensus        89 Dilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  150 (251)
T d2c07a1          89 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGL  150 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             eeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhc
Confidence            99999887410                          233444543  36899999876543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.19  E-value=3.1e-06  Score=65.52  Aligned_cols=80  Identities=21%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCChhhHHHHHHHHCC--CCccEE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE---AFNYKEEADLNAALKRYFP--EGIDIY  153 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~~--~~~d~v  153 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++++...   ..|..+.++..+.+.+...  +.+|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            58999999999999999999999999999999999998877765666532   2344443233333332221  479999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      ++++|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99887

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.18  E-value=5.1e-06  Score=63.95  Aligned_cols=80  Identities=20%  Similarity=0.328  Sum_probs=59.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---e--eeecCChhhHHHHHHHHC--CCCcc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---E--AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~--v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      +|+.+||+||++++|.++++.+...|++|+++++++++.+.+.++++..   .  ..|..+.++....+.+..  .|.+|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            6789999999999999999999999999999999999888776566542   1  224444323333333322  14799


Q ss_pred             EEEeCCC
Q 024411          152 IYFENVG  158 (268)
Q Consensus       152 ~v~d~~g  158 (268)
                      ++++++|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999887

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=7.6e-07  Score=67.40  Aligned_cols=105  Identities=12%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~  157 (268)
                      ++++|||+||++++|.++++.+...|++|+.+++++.+..........+ ..+....+.....+.+..+. ++|++++++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iD~lInnA   79 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMT-DSFTEQADQVTAEVGKLLGDQKVDAILCVA   79 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCC-SCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccccceeecc-cCcHHHHHHHHHHHHHHhCCCCceEEEECC
Confidence            4789999999999999999999999999999986543211100000000 00011111334444444344 799999998


Q ss_pred             Ch-h---h-----------------------HHhHHHhhhcCCEEEEEcccccc
Q 024411          158 GG-K---L-----------------------LDAVLPNMKIRGRIAACGMISQY  184 (268)
Q Consensus       158 g~-~---~-----------------------~~~~~~~l~~~G~~v~~g~~~~~  184 (268)
                      |. .   .                       .+..++.++++|+++.+++....
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~  133 (236)
T d1dhra_          80 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL  133 (236)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             cccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc
Confidence            73 1   0                       23455566788999999876543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.9e-06  Score=65.61  Aligned_cols=102  Identities=20%  Similarity=0.354  Sum_probs=68.0

Q ss_pred             CcEE-EEecCcchHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhh---HHHHHHHHCCC
Q 024411           80 GECV-FISAASGAVGQLVGQF-AKLLGCYVVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEAD---LNAALKRYFPE  148 (268)
Q Consensus        80 ~~~v-lI~ga~g~~G~~~i~l-~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~---~~~~~~~~~~~  148 (268)
                      |.+| ||+||++|+|+++++. ++..|++|+++++++++.+.+.+++   +.. .  ..|..+.++   +.+.+.+.. +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-G   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-C
Confidence            4566 8999999999988765 4556899999999999876655443   332 2  234444322   333443322 3


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      .+|++++++|-.                          ..+..++.|++.|+++.+++..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~  140 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM  140 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            799999998831                          0334556667889999987643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.12  E-value=9.3e-06  Score=62.03  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhh---HHHHHHHHCCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEAD---LNAALKRYFPEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~---~~~~~~~~~~~~  149 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++   .+...   ..|..+.++   +.+.+.+..++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999999999999876665433   34332   234444322   334444555557


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      .|++++++|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999998874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.9e-06  Score=63.14  Aligned_cols=79  Identities=18%  Similarity=0.283  Sum_probs=60.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.+..+.. .+.|.+.. +..+...+.. +.+|+++++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~-~~id~lVn~a   82 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKK-KQIDQFANEV-ERLDVLFNVA   82 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCH-HHHHHHHHHC-SCCSEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccc-cccccccccc-ccceeEEecc
Confidence            6789999999999999999999999999999999998888776344432 23454444 5555555443 3699999998


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      |.
T Consensus        83 g~   84 (245)
T d2ag5a1          83 GF   84 (245)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.10  E-value=7.7e-06  Score=62.26  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---e--eeecCChhhH---HHHHHHHCCCCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---E--AFNYKEEADL---NAALKRYFPEGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~--v~~~~~~~~~---~~~~~~~~~~~~  150 (268)
                      +|+.+||+||++++|.++++.+...|++|+++++++++.+.+.++++..   .  ..|..+.++.   .+.+.+.. |++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh-CCc
Confidence            5789999999999999999999999999999999999888776565432   1  2244443232   33333322 479


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        84 DiLVnnAg~   92 (251)
T d1zk4a1          84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999999874

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.06  E-value=2e-05  Score=60.19  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=70.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHH----hcCCCe---eeecCChhhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKVDLLKN----KFGFDE---AFNYKEEADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~-~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~~~~~--~  148 (268)
                      +|+.+||+||++++|.++++.+...|++|+++.+++ ++.+.+.+    +.+...   ..|..+.++..+.+.+...  |
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            678999999999999999999999999999999864 44444321    334332   2344443233333332221  4


Q ss_pred             CccEEEeCCChhh--------------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          149 GIDIYFENVGGKL--------------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~~--------------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      ++|++++++|...                          .+.+++.++.  +|++|.+++..+.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  146 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL  146 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccce
Confidence            6999999987310                          3345556554  5899999876654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.05  E-value=2.8e-05  Score=58.93  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCe---eeecCChhhHHHHHHHHC--CCCccE
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKFGFDE---AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +++.+||+||++++|.++++.+...|++|+++++++. ..+...++.|...   ..|..+.++....+.+..  .|++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999999999999999999998654 2333332666532   234444323333333322  147999


Q ss_pred             EEeCCCh-hh-------------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          153 YFENVGG-KL-------------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       153 v~d~~g~-~~-------------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      +++++|. ..                         .+.+++.+..  +|++|.+++..+.
T Consensus        84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  143 (247)
T d2ew8a1          84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW  143 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred             EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc
Confidence            9999874 10                         2335555543  5899999876553

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.03  E-value=8.6e-06  Score=62.76  Aligned_cols=81  Identities=16%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e----eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E----AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~----v~~~~~~~~~~~~~~~~~--~  147 (268)
                      +|+++||+||++++|.+++..+...|++|+++++++++.+.+.+++   +..  .    ..|..+.++....+.+..  .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999998877665333   221  1    224444323333333322  1


Q ss_pred             CCccEEEeCCCh
Q 024411          148 EGIDIYFENVGG  159 (268)
Q Consensus       148 ~~~d~v~d~~g~  159 (268)
                      |++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            479999998773

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.01  E-value=2.6e-05  Score=59.99  Aligned_cols=105  Identities=19%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHCC--CC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYFP--EG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~~--~~  149 (268)
                      +|+.+||+||++++|.++++.+...|++|++++++ ++..+.+.+   +.+...   ..|..++++..+.+.+...  ++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999766 343333321   445432   2244443244444333321  47


Q ss_pred             ccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEccccc
Q 024411          150 IDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       150 ~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      +|++++++|..                          ..+...+.|..+|+++.++...+
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~  156 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  156 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccc
Confidence            89999988741                          03456667778898888876543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.01  E-value=2.2e-05  Score=59.90  Aligned_cols=105  Identities=19%  Similarity=0.250  Sum_probs=68.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~  148 (268)
                      -.|+++||+||++++|.+.++.+...|++|++++++ ++..+.+.+   +.|...   ..|..+.++....+.+..  .|
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999987654 444444332   445432   224444323333333222  13


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhhcCCEEEEEcccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMKIRGRIAACGMIS  182 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  182 (268)
                      .+|++++++|..                          ..+.+++.++.+|+++.+....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~  143 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIA  143 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccc
Confidence            699999998742                          1445666777788887776543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.98  E-value=2.1e-05  Score=59.99  Aligned_cols=106  Identities=20%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CC-Cee----eecCChhhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GF-DEA----FNYKEEADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~-~~v----~~~~~~~~~~~~~~~~~~--~  148 (268)
                      +|+.+||+||++|+|.++++.+...|++|+++++++++.+.+.+++   +. ..+    .|..+.++....+.+...  |
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999998776554222   22 122    244443233333333221  4


Q ss_pred             CccEEEeCCCh--hh-------------------------HHhHHHhhh--cCCEEEEEcccccc
Q 024411          149 GIDIYFENVGG--KL-------------------------LDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~--~~-------------------------~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      ++|++++++|.  ..                         .+.+++.++  .+|++|.+++..+.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  147 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI  147 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc
Confidence            69999998872  10                         233444444  46899999876653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.5e-05  Score=59.98  Aligned_cols=107  Identities=20%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCe-ee--ecCChhhHHHHHHHH--CCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDE-AF--NYKEEADLNAALKRY--FPE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~-v~--~~~~~~~~~~~~~~~--~~~  148 (268)
                      -+|+++||+||++|+|.+++..+...|++|+++++++++.+.+.++.    +... .+  +..............  ..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999877765332    2221 11  222221221111111  123


Q ss_pred             CccEEEeCCChh--------------------------hHHhHHHhhh-cCCEEEEEcccccc
Q 024411          149 GIDIYFENVGGK--------------------------LLDAVLPNMK-IRGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~~~  184 (268)
                      ..|+++++.|..                          .....+..++ .+|+++.+++..+.
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~  154 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK  154 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc
Confidence            688888876631                          0233444444 47899998876653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=8.9e-06  Score=62.04  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=57.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHCC--CCc
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYFP--EGI  150 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~~--~~~  150 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.++   .|...   ..|..++++..+.+.+...  |++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999998877665433   34332   2344443233332222211  479


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.98  E-value=2.3e-05  Score=55.65  Aligned_cols=103  Identities=16%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-ecCCh------------------hhHHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF-NYKEE------------------ADLNA  140 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~-~~~~~------------------~~~~~  140 (268)
                      ..+|+|+|+ |..|+.++..|+.+|++|.+.+.+.++.+.++ +++...+. +....                  ....+
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-HhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            457999998 99999999999999999999999999999998 77764321 00000                  01122


Q ss_pred             HHHHHCCCCccEEEeCCC---hh----hHHhHHHhhhcCCEEEEEccccccc
Q 024411          141 ALKRYFPEGIDIYFENVG---GK----LLDAVLPNMKIRGRIAACGMISQYN  185 (268)
Q Consensus       141 ~~~~~~~~~~d~v~d~~g---~~----~~~~~~~~l~~~G~~v~~g~~~~~~  185 (268)
                      .+.+... ..|+++-++=   .+    .-+.+.+.++|++.+|.+.-..+-+
T Consensus       107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence            2322222 4899998763   21    3478999999999999997655443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=3.9e-05  Score=59.85  Aligned_cols=106  Identities=23%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC---------HHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS---------KDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~---------~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      +|+++||+||++|+|.+.+..+...|++|++.+++         .+..+.+.++   .+.....+..+.++..+.+.+..
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            57899999999999999999999999999998643         3333333222   23333444444313333333221


Q ss_pred             --CCCccEEEeCCChh--------------------------hHHhHHHhhhc--CCEEEEEcccccc
Q 024411          147 --PEGIDIYFENVGGK--------------------------LLDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       147 --~~~~d~v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                        .|++|++++++|..                          ..+.+++.|+.  +|++|.+++..+.
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~  153 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI  153 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhc
Confidence              24799999998731                          03445666643  5899999876543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=1.1e-05  Score=61.82  Aligned_cols=80  Identities=15%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e----eeecCChhhHHHHHHHHCC--
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E----AFNYKEEADLNAALKRYFP--  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~----v~~~~~~~~~~~~~~~~~~--  147 (268)
                      +++.+||+||++++|.++++.+...|++|+++++++++.+.+.+++   +..  .    ..|..+.++..+.+.+...  
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999998877655332   221  1    2344443233333333221  


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      |++|++++++|
T Consensus        84 g~iDilvnnAG   94 (264)
T d1spxa_          84 GKLDILVNNAG   94 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEeecccc
Confidence            47999999987

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.4e-05  Score=62.40  Aligned_cols=83  Identities=17%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--------CCCe---eeecCChhhHHHHHHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF--------GFDE---AFNYKEEADLNAALKRY  145 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~--------g~~~---v~~~~~~~~~~~~~~~~  145 (268)
                      .-+|+.+||+||++++|.++++.+...|++|++++++.++.+.+.+++        +...   ..|..+.++....+.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            347899999999999999999999999999999999988776554333        1111   12444432333333332


Q ss_pred             C--CCCccEEEeCCCh
Q 024411          146 F--PEGIDIYFENVGG  159 (268)
Q Consensus       146 ~--~~~~d~v~d~~g~  159 (268)
                      .  .|++|++++++|.
T Consensus        89 ~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCeEEEEeeccc
Confidence            2  1379999999874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.94  E-value=8.7e-05  Score=51.96  Aligned_cols=73  Identities=21%  Similarity=0.280  Sum_probs=57.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      --.+.++||+|+ |.+|..+++.+...|+ +++++.|+.++.+.+.++++. .+.+++   ++.+.+.     .+|+++.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~---~~~~~l~-----~~Divi~   90 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFD---ELVDHLA-----RSDVVVS   90 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGG---GHHHHHH-----TCSEEEE
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccch---hHHHHhc-----cCCEEEE
Confidence            346788999998 9999999999999998 799999998887766557775 344443   5555554     3999999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      |++.
T Consensus        91 atss   94 (159)
T d1gpja2          91 ATAA   94 (159)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9986

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.94  E-value=1.3e-05  Score=61.85  Aligned_cols=80  Identities=20%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC--e----eeecCChhhHHHHHHHHC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD--E----AFNYKEEADLNAALKRYF--P  147 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~--~----v~~~~~~~~~~~~~~~~~--~  147 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.+++   +..  .    ..|..+.++..+.+.+..  .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999999999988876654332   321  1    234444323333333222  1


Q ss_pred             CCccEEEeCCC
Q 024411          148 EGIDIYFENVG  158 (268)
Q Consensus       148 ~~~d~v~d~~g  158 (268)
                      |.+|++++++|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            47999999887

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.92  E-value=1.7e-05  Score=60.48  Aligned_cols=80  Identities=14%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCcc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      |+.+||+||++|+|.+++..+...|++|+++++++++.+.+.++   .+...   ..|..+.++....+.+..  -|++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            57789999999999999999999999999999998877665433   34332   234444323333333222  24799


Q ss_pred             EEEeCCCh
Q 024411          152 IYFENVGG  159 (268)
Q Consensus       152 ~v~d~~g~  159 (268)
                      ++++++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999874

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=2.4e-06  Score=64.50  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-----hhhHHHHHHHH-CCCCccEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKE-----EADLNAALKRY-FPEGIDIY  153 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~~~~~~~~-~~~~~d~v  153 (268)
                      +.+|||+||++++|.++++.+...|++|+++++++++....      ...+..+.     .......+... ..+.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADS------NILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSE------EEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccc------cceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            35689999999999999999999999999999875432111      01111111     00122222332 23479999


Q ss_pred             EeCCCh-h---h-----------------------HHhHHHhhhcCCEEEEEccccc
Q 024411          154 FENVGG-K---L-----------------------LDAVLPNMKIRGRIAACGMISQ  183 (268)
Q Consensus       154 ~d~~g~-~---~-----------------------~~~~~~~l~~~G~~v~~g~~~~  183 (268)
                      ++++|. .   .                       .+..++.++++|+++.++....
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence            999873 1   0                       2345566678899999987554

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=4.1e-05  Score=57.45  Aligned_cols=73  Identities=25%  Similarity=0.349  Sum_probs=53.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +++++||+||++++|.++++.+...|++|++++++++..+    +.+... +.|.++  .... +.+.. +.+|++++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~~~~~~~~~Dv~~--~~~~-~~~~~-g~iD~lVnnA   74 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RSGHRYVVCDLRK--DLDL-LFEKV-KEVDILVLNA   74 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HTCSEEEECCTTT--CHHH-HHHHS-CCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----hcCCcEEEcchHH--HHHH-HHHHh-CCCcEEEecc
Confidence            5789999999999999999999999999999999876554    334322 223332  3333 33332 4699999988


Q ss_pred             Ch
Q 024411          158 GG  159 (268)
Q Consensus       158 g~  159 (268)
                      |.
T Consensus        75 G~   76 (234)
T d1o5ia_          75 GG   76 (234)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.89  E-value=3e-05  Score=58.56  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=67.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHH---hcCCCe---eeecCChhhHH---HHHHHHCCCCc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSA-GSKDKVDLLKN---KFGFDE---AFNYKEEADLN---AALKRYFPEGI  150 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~-~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~---~~~~~~~~~~~  150 (268)
                      ..+||+||++++|.++++.+...|++|++.+ ++++..+.+.+   +.+...   ..|..+.++..   +.+.+.. |++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CCC
Confidence            4689999999999999999999999999875 45555554432   344321   23444432333   3333332 479


Q ss_pred             cEEEeCCChh--------------------------hHHhHHHhhh--cCCEEEEEcccccc
Q 024411          151 DIYFENVGGK--------------------------LLDAVLPNMK--IRGRIAACGMISQY  184 (268)
Q Consensus       151 d~v~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~g~~~~~  184 (268)
                      |++++++|..                          ..+.+++.|.  .+|++|.+++..+.
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  142 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL  142 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhc
Confidence            9999998741                          0344566653  47999999876543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.89  E-value=3.4e-05  Score=59.99  Aligned_cols=81  Identities=16%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----hcCCCe-e--eecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN----KFGFDE-A--FNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +|+++||+||++++|.+++..+...|++|+++++++++.+.+.+    +.+... .  .|..+.++....+....  .++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            57999999999999999999999999999999999887655432    334332 2  24444323333232221  247


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.88  E-value=1.7e-05  Score=60.63  Aligned_cols=80  Identities=11%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN----KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +|+++||+||++++|.++++.+...|++|+++++++++.+.+.+    +.|...   ..|..++++....+.+..  .|.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999998776544322    345432   234444423333333321  247


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        88 iDilVnnAg   96 (260)
T d1h5qa_          88 ISGLIANAG   96 (260)
T ss_dssp             EEEEEECCC
T ss_pred             CcEeccccc
Confidence            999999887

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=0.0002  Score=54.54  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=70.2

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ...+++||++||=.|+ | .|..+..+|+..+  .+|+.++.+++..+.+++   .++....+..... +.    .....
T Consensus        97 ~~l~i~pG~~VLDiG~-G-sG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~-d~----~~~~~  169 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGV-G-SGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DI----SEGFD  169 (266)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CG----GGCCS
T ss_pred             HhhCCCCCCEEEECCC-C-CCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec-cc----ccccc
Confidence            4568999999999996 3 4788889999875  599999999998888764   2344322211111 21    11122


Q ss_pred             C-CccEEEeCCC-h-hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 E-GIDIYFENVG-G-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~-~~d~v~d~~g-~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . .+|.++--.. . ..+..+.+.|+|+|+++.+..
T Consensus       170 ~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         170 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            3 6887765444 3 678999999999999987643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.84  E-value=2.8e-05  Score=59.01  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCC-e--eeecCChh---hHHHHHHHHCCC-Cc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFD-E--AFNYKEEA---DLNAALKRYFPE-GI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~---~~~~~~~~~~~~-~~  150 (268)
                      .++|||+||++|+|.++++.+...|+  +|+.++++.++.+.+++..+.. +  ..|..+.+   .+.+.+.+..+. +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            47899999999999999988888886  7999999998888887333332 2  23444431   233444443333 69


Q ss_pred             cEEEeCCCh
Q 024411          151 DIYFENVGG  159 (268)
Q Consensus       151 d~v~d~~g~  159 (268)
                      |++++++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999883

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.81  E-value=3.6e-05  Score=58.76  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCCe---eeecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKN---KFGFDE---AFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +|+.+||+||++++|.++++.+...|++|+++.++++ ..+.+.+   +.+...   ..|..++++..+.+.+..  .|+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999998754 3333221   444431   234444323333333322  147


Q ss_pred             ccEEEeCCCh
Q 024411          150 IDIYFENVGG  159 (268)
Q Consensus       150 ~d~v~d~~g~  159 (268)
                      +|++++++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.79  E-value=3.5e-05  Score=58.64  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCChhhHHHHHHHHC--CCCccE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE---AFNYKEEADLNAALKRYF--PEGIDI  152 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~~~~--~~~~d~  152 (268)
                      +.+||+||++++|.+++..+...|++|+++++++++.+.+.++   .|...   ..|..+.++..+.+.+..  -|++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4569999999999999999999999999999999887665433   34321   234444323333333322  247999


Q ss_pred             EEeCCCh
Q 024411          153 YFENVGG  159 (268)
Q Consensus       153 v~d~~g~  159 (268)
                      +++++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999873

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.78  E-value=8.2e-05  Score=55.95  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=68.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCE-------EEEEeCCHHHHHHHHHhc---CCC-e--eeecCChhhHHHHHHHHC-
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCY-------VVGSAGSKDKVDLLKNKF---GFD-E--AFNYKEEADLNAALKRYF-  146 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~-------V~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~~~~~~-  146 (268)
                      +.+||+||++|+|.+++..+...|++       |+...+++++.+.+.+++   |.. .  ..|..+.++..+.+.+.. 
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            34799999999999999999999987       888999988877665333   332 1  224444323333333221 


Q ss_pred             -CCCccEEEeCCChh--------------------------hHHhHHHhhhc--CCEEEEEcccccc
Q 024411          147 -PEGIDIYFENVGGK--------------------------LLDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       147 -~~~~d~v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                       .|.+|++++++|..                          ..+.+++.|+.  +|+++.+++..+.
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  148 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT  148 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhc
Confidence             24799999998731                          03445566643  6899999876543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=8.6e-05  Score=52.51  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=55.9

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      +| +...+.++++|+|+|+ ||.+.+++..++..|+ +++++.|+.++.+.+.+.++...+ +...            ..
T Consensus         8 ~l-~~~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~-~~~~------------~~   72 (167)
T d1npya1           8 LI-EKYHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI-NSLE------------NQ   72 (167)
T ss_dssp             HH-HHTTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE-SCCT------------TC
T ss_pred             HH-HHcCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh-hccc------------cc
Confidence            44 3445667889999997 9999999999999998 899999999988877756655322 1111            12


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++|+.
T Consensus        73 ~~DliINaTp   82 (167)
T d1npya1          73 QADILVNVTS   82 (167)
T ss_dssp             CCSEEEECSS
T ss_pred             chhhheeccc
Confidence            5899999876

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.78  E-value=4.6e-05  Score=57.97  Aligned_cols=80  Identities=15%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeee--ecCChhhHHHHHHHHC--CCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAF--NYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~--~~~~~~~~~~~~~~~~--~~~  149 (268)
                      +|+++||+||+|  |+|.++++.+...|++|++..++++..+.+.+   ..+....+  |..+.++....+.+..  .|+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            578999999987  89999999999999999999988764443321   23333332  3333323222222211  247


Q ss_pred             ccEEEeCCC
Q 024411          150 IDIYFENVG  158 (268)
Q Consensus       150 ~d~v~d~~g  158 (268)
                      +|++++++|
T Consensus        87 iDilVnnag   95 (256)
T d1ulua_          87 LDYLVHAIA   95 (256)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEeccc
Confidence            999999886

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.68  E-value=2.6e-05  Score=59.30  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=67.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc----CCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF----GFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +.||+||++++|.+++..+...|++|++.+++.++.+.+. ..    ....+.+..+...+.+.+.+.. |++|++++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~~~~~~-G~iDiLVnNA   79 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   79 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hhhCcEEEeccCCHHHHHHHHHHHHHHc-CCCCEEEECC
Confidence            6899999999999999999999999999998887776665 32    2222333333223444444432 4699999876


Q ss_pred             Ch--h--h-----------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          158 GG--K--L-----------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       158 g~--~--~-----------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      |.  .  .                       .+.+++.|+.  +|++|.+++..+.
T Consensus        80 g~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~  135 (252)
T d1zmta1          80 IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPF  135 (252)
T ss_dssp             CCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTT
T ss_pred             cCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccc
Confidence            52  1  0                       2334445543  6899999876543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.65  E-value=6.1e-05  Score=55.49  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=73.8

Q ss_pred             hccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCh
Q 024411           59 ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEE  135 (268)
Q Consensus        59 ~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~  135 (268)
                      .+..+...|. .+ +...++++++||.+|+  |.|..++-+++..|.+|+.+...++-.+.+++   ++|.+++.....+
T Consensus        60 ~is~P~~~a~-ml-~~L~l~~g~~VLeIGs--GsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd  135 (215)
T d1jg1a_          60 TVSAPHMVAI-ML-EIANLKPGMNILEVGT--GSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD  135 (215)
T ss_dssp             EECCHHHHHH-HH-HHHTCCTTCCEEEECC--TTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             hhhhhhhHHH-HH-HhhccCccceEEEecC--CCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence            3444544443 23 4568999999999994  56888888888889889999988775555542   4566554322221


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                       .. .-..  ..+.||.++-+.+- ..-...++.|+++|++|..
T Consensus       136 -~~-~g~~--~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         136 -GS-KGFP--PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             -GG-GCCG--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             -cc-cCCc--ccCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence             11 0011  11369999876665 4446778899999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.00039  Score=49.11  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             HHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC
Q 024411           69 VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        69 ~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ++|....-..++++|||+|+ ||.+.+++..+..+|++++++.|+.++.+.+.+.+.....+.....++.       ...
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~-------~~~   78 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL-------EGH   78 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGG-------TTC
T ss_pred             HHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccc-------ccc
Confidence            44544443467899999998 9999999999999999999999999988777644432211111111011       112


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++|+.
T Consensus        79 ~~dliIN~Tp   88 (170)
T d1nyta1          79 EFDLIINATS   88 (170)
T ss_dssp             CCSEEEECCS
T ss_pred             ccceeecccc
Confidence            6899999986

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=7.1e-05  Score=56.46  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             HHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHH
Q 024411           68 YVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        68 ~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      +..|....++.++++||=+|+  |.|..+..+++..|++|++++.|+...+.+++   ..|....+..... +.    .+
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGC--G~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-d~----~~   94 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGS--GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-DA----AG   94 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETC--TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CC----TT
T ss_pred             HHHHHHHcCCCCCCEEEEEcC--CCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhh-HH----hh
Confidence            344556778999999999996  44667788888889999999999988877663   2354321111111 11    11


Q ss_pred             HCC-CCccEEEeC-----CCh--hhHHhHHHhhhcCCEEEEEc
Q 024411          145 YFP-EGIDIYFEN-----VGG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       145 ~~~-~~~d~v~d~-----~g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ... +.||.|+-.     ..+  ..+..+.+.|+|+|+++...
T Consensus        95 ~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          95 YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            122 379988742     222  46788899999999987753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4.7e-05  Score=55.83  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=62.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .++|+|+||+|.+|..++..+...|.+|.+++|++++..... ..+. .++  |..+.    +.+.+... ++|+|+.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~~-~~~~gD~~d~----~~l~~al~-~~d~vi~~~   75 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPA-HVVVGDVLQA----ADVDKTVA-GQDAVIVLL   75 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCS-EEEESCTTSH----HHHHHHHT-TCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc-cccc-ccccccccch----hhHHHHhc-CCCEEEEEe
Confidence            467999999999999999988899999999999988755332 2233 233  33332    22333222 489999998


Q ss_pred             Chh-----------hHHhHHHhhhcC--CEEEEEccc
Q 024411          158 GGK-----------LLDAVLPNMKIR--GRIAACGMI  181 (268)
Q Consensus       158 g~~-----------~~~~~~~~l~~~--G~~v~~g~~  181 (268)
                      |..           .....++.++..  .+++.++..
T Consensus        76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence            741           122344445543  367777553

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=1.8e-05  Score=59.56  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC--CCCccEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF--PEGIDIYFEN  156 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~--~~~~d~v~d~  156 (268)
                      .++++||+||++++|.++++.+...|++|+++++++++.+.+.     ....|..+.++..+.+.+..  .|.+|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~-----~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-----GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE-----EEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce-----EEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            5789999999999999999999999999999998765433211     12234444323332232222  1369999998


Q ss_pred             CCh
Q 024411          157 VGG  159 (268)
Q Consensus       157 ~g~  159 (268)
                      +|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            873

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.53  E-value=6e-05  Score=57.22  Aligned_cols=106  Identities=18%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH---HHhcCCCe----eeecC-ChhhHHHHHHHHCC--C
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL---KNKFGFDE----AFNYK-EEADLNAALKRYFP--E  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~---~~~~g~~~----v~~~~-~~~~~~~~~~~~~~--~  148 (268)
                      +++++||+||++|+|.+++..+...|++|++++++.++.+.+   +...+...    ..|.. +.++..+.+.....  +
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999987765543333   21223222    22332 21123222222211  4


Q ss_pred             CccEEEeCCChh---h---------------HHhHHHhhh-----cCCEEEEEcccccc
Q 024411          149 GIDIYFENVGGK---L---------------LDAVLPNMK-----IRGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~---~---------------~~~~~~~l~-----~~G~~v~~g~~~~~  184 (268)
                      ++|++++++|..   .               .+..++.+.     ++|+++.+++..+.
T Consensus        84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~  142 (254)
T d1sbya1          84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF  142 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc
Confidence            799999999851   1               233444442     25889888776553

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00041  Score=53.39  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEE---EeCCHHHH---HHHHHhcCC---C-e--eeecCChhhHHHHHHHHCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVG---SAGSKDKV---DLLKNKFGF---D-E--AFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~---~~~~~~~~---~~~~~~~g~---~-~--v~~~~~~~~~~~~~~~~~~~  148 (268)
                      +.+||+||++|+|.+++..+...|++|+.   +.++.++.   ....+++..   . .  ..|..+.++....+.+...+
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            45789999999999999999999986544   44443332   222213322   1 1  23555542444444444445


Q ss_pred             CccEEEeCCChhh--------------------------HHhHHHhhhc--CCEEEEEcccccc
Q 024411          149 GIDIYFENVGGKL--------------------------LDAVLPNMKI--RGRIAACGMISQY  184 (268)
Q Consensus       149 ~~d~v~d~~g~~~--------------------------~~~~~~~l~~--~G~~v~~g~~~~~  184 (268)
                      .+|+++++.|...                          .+..+..|..  +|++|.+++..+.
T Consensus        83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~  146 (285)
T d1jtva_          83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL  146 (285)
T ss_dssp             CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred             chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc
Confidence            8999999886310                          2344555543  6899999876654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=0.00015  Score=53.39  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=67.7

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~  147 (268)
                      +...++++++||-+|+  |.|..++.+++..|.  +|+.++.+++..+.+++.   .+...+.....  +......  ..
T Consensus        69 ~~l~l~~g~~VLdiG~--GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~--d~~~~~~--~~  142 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIGG--GTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG--DGYYGVP--EF  142 (213)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--CGGGCCG--GG
T ss_pred             HhhhccccceEEEecC--ccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC--chHHccc--cc
Confidence            5568999999999996  448888889998764  899999999887777633   23433221111  1100000  01


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +.||.|+.+.+- ......++.|+|+|+++..
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            369999987765 3346678899999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.49  E-value=0.0013  Score=46.44  Aligned_cols=96  Identities=10%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++|+|+|| |.+|..+++.+...|.+|+++.++.++.+.+.+.++...+.....  .......... ...|.++.+...
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~--~~~~~~~~~i-~~~~~~i~~~~~   77 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDV--NDDAALDAEV-AKHDLVISLIPY   77 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCT--TCHHHHHHHH-TTSSEEEECSCG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccc--cchhhhHhhh-hccceeEeeccc
Confidence            578999998 999999999999999999999999999988874554432222111  1111111111 146788877776


Q ss_pred             -hhHHhHHHhhhcCCEEEEEc
Q 024411          160 -KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       160 -~~~~~~~~~l~~~G~~v~~g  179 (268)
                       ........++..+..++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          78 TFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             GGHHHHHHHHHHHTCEEECSS
T ss_pred             hhhhHHHHHHHhhccceeecc
Confidence             44444455555566665543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.48  E-value=0.00014  Score=53.93  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             cchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-Ce--eeecCChhh
Q 024411           61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DE--AFNYKEEAD  137 (268)
Q Consensus        61 ~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~--v~~~~~~~~  137 (268)
                      ..+...|. .+ +...++++++||-+|+  |.|..++.+++. +.+|+.+..+++..+.+++.+.. ..  ++..+..  
T Consensus        54 ~~p~~~a~-ml-~~L~l~~g~~VLdIG~--GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~--  126 (224)
T d1vbfa_          54 TALNLGIF-ML-DELDLHKGQKVLEIGT--GIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGT--  126 (224)
T ss_dssp             CCHHHHHH-HH-HHTTCCTTCEEEEECC--TTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGG--
T ss_pred             ehhhhHHH-HH-HHhhhcccceEEEecC--CCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchh--
Confidence            33444443 33 4568999999999995  457777766664 67999999999988888743332 21  2222211  


Q ss_pred             HHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          138 LNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       138 ~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                        ....+  .+.||.++-+.+. ......++.|++||++|..
T Consensus       127 --~g~~~--~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         127 --LGYEE--EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             --GCCGG--GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             --hcchh--hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence              00111  1369988865554 4445678899999999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=0.0005  Score=52.98  Aligned_cols=104  Identities=11%  Similarity=0.042  Sum_probs=70.7

Q ss_pred             HHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHH
Q 024411           68 YVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        68 ~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      +..+....++++|++||=+|+  |.|..+..+|+..|++|++++.|++..+.+++   ..|....+..... ++.     
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGC--G~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~-d~~-----  121 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGC--GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWE-----  121 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC-CGG-----
T ss_pred             HHHHHHhcCCCCCCEEEEecC--cchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhh-ccc-----
Confidence            334446678999999999996  45677889999999999999999987666542   3455432222111 211     


Q ss_pred             HCCCCccEEEe-----CCCh-----------hhHHhHHHhhhcCCEEEEEc
Q 024411          145 YFPEGIDIYFE-----NVGG-----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       145 ~~~~~~d~v~d-----~~g~-----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ...+.||.|+.     .++.           ..+..+.+.|+|+|++++-.
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            12347998853     3332           34678899999999987643

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.44  E-value=0.00063  Score=51.47  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH-------HHHHHHhcCCCe---eeecCChhhHHHHHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK-------VDLLKNKFGFDE---AFNYKEEADLNAALKR  144 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~-------~~~~~~~~g~~~---v~~~~~~~~~~~~~~~  144 (268)
                      .++|+.++||+||++++|++++..+...|+ +|+.+.++..+       .+.++ ..|...   ..|..+.+.....+.+
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHH-hccccccccccccchHHHHHHhhcc
Confidence            578999999999999999999999999999 57777765322       22233 455431   2355554233333333


Q ss_pred             HCCC-CccEEEeCCCh
Q 024411          145 YFPE-GIDIYFENVGG  159 (268)
Q Consensus       145 ~~~~-~~d~v~d~~g~  159 (268)
                      .... ..|.++.+.|.
T Consensus        84 i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccc
Confidence            3333 68999998873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.44  E-value=0.00019  Score=54.03  Aligned_cols=100  Identities=9%  Similarity=0.081  Sum_probs=69.0

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc---C-CCeeeecCChhhHHHHHHHHC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKF---G-FDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~---g-~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      ...+++||++||=.|+  |.|.++..+|+..+.  +|+.++.+++..+.+++.+   + ...+--...  ++    .+..
T Consensus        79 ~~l~i~pG~rVLEiG~--GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~--Di----~~~~  150 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGV--GSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS--DI----ADFI  150 (250)
T ss_dssp             --CCCCTTCEEEEECC--TTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS--CT----TTCC
T ss_pred             HHcCCCCcCEEEEeee--eCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe--ee----eccc
Confidence            3468999999999986  347788888888754  8999999999888887433   2 222211111  22    1222


Q ss_pred             CC-CccEEE-eCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PE-GIDIYF-ENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~-~~d~v~-d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+ .||.|+ |.... ..+..+.+.|+|+|+++.+..
T Consensus       151 ~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         151 SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             ccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeC
Confidence            33 799876 54444 688999999999999988643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00025  Score=53.41  Aligned_cols=49  Identities=14%  Similarity=0.103  Sum_probs=43.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      +|+.+||+||++++|.++++.+...|++|+++++++++.+.+.++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999999988877776577654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00077  Score=51.71  Aligned_cols=102  Identities=12%  Similarity=0.049  Sum_probs=69.7

Q ss_pred             HHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHH
Q 024411           69 VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        69 ~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      ..+....++++|++||=+|+  |.|..++.+++..|++|++++.|++..+.+++   +.|...-+..... ++    ++ 
T Consensus        52 ~~~~~~l~l~~G~~VLDiGC--G~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-d~----~~-  123 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGC--GWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GW----EQ-  123 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CG----GG-
T ss_pred             HHHHHHcCCCCCCEEEEecC--cchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-hh----hc-
Confidence            33445678999999999996  56889999999999999999999998777753   2333221111111 21    11 


Q ss_pred             CCCCccEEEe-----CCCh----hhHHhHHHhhhcCCEEEEE
Q 024411          146 FPEGIDIYFE-----NVGG----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       146 ~~~~~d~v~d-----~~g~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      .++.+|.++.     .++.    ..+..+.+.|+|+|++++-
T Consensus       124 ~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         124 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            1346887653     4442    2467888999999998764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.33  E-value=0.00021  Score=53.94  Aligned_cols=78  Identities=13%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             cEEEEecCcchHHHHHHHHHH---HcCCEEEEEeCCHHHHHHHHH--hcCCC-e--eeecCChhh---HHHHHHHHCC-C
Q 024411           81 ECVFISAASGAVGQLVGQFAK---LLGCYVVGSAGSKDKVDLLKN--KFGFD-E--AFNYKEEAD---LNAALKRYFP-E  148 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~---~~g~~V~~~~~~~~~~~~~~~--~~g~~-~--v~~~~~~~~---~~~~~~~~~~-~  148 (268)
                      ++|||+||++|+|.++++.+.   ..|++|+++++++++.+.+++  +.+.. .  ..|..+.++   +.+.++.... +
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            579999999999999887654   468899999999886655441  11222 2  234444323   3333333333 3


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      .+|++++++|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999999876

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=0.00052  Score=52.39  Aligned_cols=80  Identities=11%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCee--eecCChhhHH---HHHHHHCCC
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKD---KVDLLKNKFGFDEA--FNYKEEADLN---AALKRYFPE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~---~~~~~~~~~  148 (268)
                      +|+++||+||+|  |+|.++++.+...|++|+++.++++   +.+.+.++.+...+  .+...+.+..   ..+.+. .+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD-LG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-TS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH-cC
Confidence            589999999876  7999999999999999999998864   33333312232222  2333321322   333332 24


Q ss_pred             CccEEEeCCCh
Q 024411          149 GIDIYFENVGG  159 (268)
Q Consensus       149 ~~d~v~d~~g~  159 (268)
                      .+|+++.++|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            79999988873

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.31  E-value=0.0026  Score=42.58  Aligned_cols=75  Identities=19%  Similarity=0.116  Sum_probs=56.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      .|+|.|+ |.+|..+++.+...|.+|++++.++++.+.+.++++.. ++..+.  .-.+.+++..-..+|.++-++.+.
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~--~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL-VINGDC--TKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE-EEESCT--TSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh-hccCcc--cchhhhhhcChhhhhhhcccCCcH
Confidence            5899998 99999999999999999999999999998887556543 444333  223344444334789999888864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.29  E-value=0.0007  Score=48.67  Aligned_cols=97  Identities=13%  Similarity=0.037  Sum_probs=64.6

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-----------------eecCChhh
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-----------------FNYKEEAD  137 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-----------------~~~~~~~~  137 (268)
                      ..+.++.+||..|+  |.|..+..+|+ .|++|++++.|+...+.+++..+....                 +..+.. +
T Consensus        16 l~~~~~~rvLd~GC--G~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~   91 (201)
T d1pjza_          16 LNVVPGARVLVPLC--GKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-A   91 (201)
T ss_dssp             HCCCTTCEEEETTT--CCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-S
T ss_pred             cCCCCCCEEEEecC--cCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc-c
Confidence            36889999999997  45788888886 599999999999999999844432110                 101110 1


Q ss_pred             HHHHHHHHCCCCccEEEeCCCh---------hhHHhHHHhhhcCCEEEEEc
Q 024411          138 LNAALKRYFPEGIDIYFENVGG---------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       138 ~~~~~~~~~~~~~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.....    +.+|.+++...-         ..+..+.+.|+|+|+++...
T Consensus        92 l~~~~~----~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          92 LTARDI----GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             STHHHH----HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccc----cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            111111    148988874431         24677888999999976653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.002  Score=45.80  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH---Hhc----CC-CeeeecCChhhHHHHHHHHCCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLK---NKF----GF-DEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~---~~~----g~-~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      -++++|+|+|+ |+.+.+++..+..+|+ +++++.|++++.+.+.   +++    .. ....+..+...+...+.     
T Consensus        16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   89 (182)
T d1vi2a1          16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA-----   89 (182)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-----
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc-----
Confidence            36789999998 9999999999999998 8889898766544332   122    21 12334433213333332     


Q ss_pred             CccEEEeCCCh--h-----hHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVGG--K-----LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g~--~-----~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+|++++|+.-  .     .+..-...++++..++.+..
T Consensus        90 ~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          90 SADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  128 (182)
T ss_dssp             TCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCC
T ss_pred             ccceeccccCCccccccchhhhhHHHhhhcchhhHHhhc
Confidence            48999999862  1     11122345666777766643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.0011  Score=50.84  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             HHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHH
Q 024411           69 VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRY  145 (268)
Q Consensus        69 ~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~  145 (268)
                      ..+....++++|++||=+|+  |.|..+..+++..|++|++++.|++..+.+++.   .|....+..... ++.    + 
T Consensus        42 ~~~~~~l~l~~g~~VLDiGC--G~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~-d~~----~-  113 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIGC--GWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWE----D-  113 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGG----G-
T ss_pred             HHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhh-hhh----h-
Confidence            33445568999999999997  345567788899999999999999988777632   344321111111 111    1 


Q ss_pred             CCCCccEEEe-----CCCh----hhHHhHHHhhhcCCEEEEE
Q 024411          146 FPEGIDIYFE-----NVGG----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       146 ~~~~~d~v~d-----~~g~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      .++.+|.|+-     .++.    ..++.+.+.|+|+|++++-
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            2347887753     3442    2467889999999998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00066  Score=50.19  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=64.1

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---CC-----Ce--eeecCChhhHHHHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKNKF---GF-----DE--AFNYKEEADLNAALK  143 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~~~---g~-----~~--v~~~~~~~~~~~~~~  143 (268)
                      .+++|++||-.|+  |.|..++.+++..|  .+|+.++.+++-.+.+++.+   +.     ..  ....+.   . ....
T Consensus        73 ~l~~g~~VLdiG~--GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~---~-~~~~  146 (224)
T d1i1na_          73 QLHEGAKALDVGS--GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---R-MGYA  146 (224)
T ss_dssp             TSCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---G-GCCG
T ss_pred             ccCCCCeEEEecC--CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec---c-cccc
Confidence            6899999999995  55888888888776  39999999988777765322   22     11  111111   0 0000


Q ss_pred             HHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          144 RYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       144 ~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +  .+.||.|+-+... ......++.|+|||++|..
T Consensus       147 ~--~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         147 E--EAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             G--GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             h--hhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            0  1269999876665 4456788999999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.14  E-value=0.0025  Score=45.11  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-------eecCC--hhhHHHHHHHHCCCCc
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-------FNYKE--EADLNAALKRYFPEGI  150 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-------~~~~~--~~~~~~~~~~~~~~~~  150 (268)
                      ++++.|+|+ |.+|++.+..+...|.+|.+.++++++.+.++ +.+....       .....  ..+..+.+.     .+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~a   73 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DA   73 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHHT-----TC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CC
Confidence            367999998 99999999999999999999999999988887 5442110       00000  002333332     48


Q ss_pred             cEEEeCCChhhHHhHHH----hhhcCCEEEE
Q 024411          151 DIYFENVGGKLLDAVLP----NMKIRGRIAA  177 (268)
Q Consensus       151 d~v~d~~g~~~~~~~~~----~l~~~G~~v~  177 (268)
                      |+++-++........++    ++.++..++.
T Consensus        74 D~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          74 DVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             SEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            99999988654444444    4445554443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.0018  Score=45.55  Aligned_cols=99  Identities=12%  Similarity=0.007  Sum_probs=63.4

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCChhhHHHHHHHHC
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---EAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~~  146 (268)
                      +|.......++++|+|+|+ ||.+.+++..+...+.+++++.|+.++.+.+.+.+...   .....+..          .
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~----------~   76 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI----------P   76 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC----------C
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc----------c
Confidence            3433333457889999997 99999998888877779999999999887776455421   12222110          1


Q ss_pred             CCCccEEEeCCChh----hHHhHHHhhhcCCEEEEEc
Q 024411          147 PEGIDIYFENVGGK----LLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       147 ~~~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  179 (268)
                      ...+|++++|+...    ........++++..++.+.
T Consensus        77 ~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          77 LQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             CSCCSEEEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred             ccccceeeecccccccccccchhhhhhcccceeeeee
Confidence            13699999998731    1122334566666665543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.07  E-value=0.013  Score=39.87  Aligned_cols=95  Identities=18%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCH--HHH-HHHHHhcCCCeeeecCChhhHHHHHHHHC---------
Q 024411           81 ECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSK--DKV-DLLKNKFGFDEAFNYKEEADLNAALKRYF---------  146 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~--~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~---------  146 (268)
                      ++|.|+|+||++|..+.++.+..  .++|++.....  +.+ +.++ ++.+..++-.++. . ...+....         
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~-ef~Pk~v~i~d~~-~-~~~l~~~~~~~~~~v~~   79 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAK-RTNAKRAVIADPS-L-YNDLKEALAGSSVEAAA   79 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHH-HTTCSEEEESCGG-G-HHHHHHHTTTCSSEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHH-hhccccceeccHH-H-HHHHHHHhhhccccccc
Confidence            78999999999999999999876  45777765332  333 3344 7777665433331 1 11222211         


Q ss_pred             ---------CCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          147 ---------PEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       147 ---------~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                               ...+|+++.+..+ ..+.-.+..++.+-++.+.
T Consensus        80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             CccchheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence                     1257888888665 7888888888888776554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.04  E-value=0.0022  Score=48.55  Aligned_cols=82  Identities=12%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCCCcEEEEecCc--chHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCCe---eeecCCh---hhHHHHHHHHCC
Q 024411           77 PKHGECVFISAAS--GAVGQLVGQFAKLLGCYVVGSAGSKDKV-DLLKNKFGFDE---AFNYKEE---ADLNAALKRYFP  147 (268)
Q Consensus        77 ~~~~~~vlI~ga~--g~~G~~~i~l~~~~g~~V~~~~~~~~~~-~~~~~~~g~~~---v~~~~~~---~~~~~~~~~~~~  147 (268)
                      +-+|+++||+||+  .|+|.++++-+...|++|+.+.++.++. +.+.++++...   ..|...+   +.+.+.+.+...
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            4578999999964  4699999999999999999999887765 44443555432   2233332   134444544332


Q ss_pred             --CCccEEEeCCC
Q 024411          148 --EGIDIYFENVG  158 (268)
Q Consensus       148 --~~~d~v~d~~g  158 (268)
                        +..|++++++|
T Consensus        83 ~~~~ld~~i~~ag   95 (268)
T d2h7ma1          83 AGNKLDGVVHSIG   95 (268)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             cCCCcceeeeccc
Confidence              36899999887

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.04  E-value=0.00042  Score=51.20  Aligned_cols=98  Identities=13%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHH---cC----CEEEEEeCCHHHHHHHHHhc--------CCCeeeecCChhhHH
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKL---LG----CYVVGSAGSKDKVDLLKNKF--------GFDEAFNYKEEADLN  139 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~---~g----~~V~~~~~~~~~~~~~~~~~--------g~~~v~~~~~~~~~~  139 (268)
                      ..++++++||.+|+  |.|..++.+++.   .|    .+|+.+...++-.+.+++.+        +...+.....  +..
T Consensus        76 ~~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~--d~~  151 (223)
T d1r18a_          76 DHLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG--DGR  151 (223)
T ss_dssp             TTCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES--CGG
T ss_pred             hccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec--ccc
Confidence            36899999999995  346555555554   34    38999998887666664221        2222211111  110


Q ss_pred             HHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          140 AALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       140 ~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      .....  .+.||.|+-+.+- ..-...++.|+++|++|..
T Consensus       152 ~~~~~--~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         152 KGYPP--NAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GCCGG--GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccccc--ccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            00000  1269988866664 4446778899999999874

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.001  Score=49.18  Aligned_cols=71  Identities=23%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      .+|||+||+|.+|..++..+...|.  .|+...+++++...+.  .+... ..|..+.+.+.+.+     .++|.++.++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~-----~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDITDADSINPAF-----QGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT--CCTTEEECCTTSHHHHHHHH-----TTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc--CCcEEEEeeecccccccccc-----ccceeeEEEE
Confidence            6899999999999999999988885  6777788887665443  12222 12333321222222     2489999887


Q ss_pred             C
Q 024411          158 G  158 (268)
Q Consensus       158 g  158 (268)
                      +
T Consensus        77 ~   77 (252)
T d2q46a1          77 S   77 (252)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.0012  Score=49.82  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=51.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHH-H--HcCCEEEEEeCCHHHHHHHHHhc---CC-Cee----eecCChhh---HHHHHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFA-K--LLGCYVVGSAGSKDKVDLLKNKF---GF-DEA----FNYKEEAD---LNAALKR  144 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~-~--~~g~~V~~~~~~~~~~~~~~~~~---g~-~~v----~~~~~~~~---~~~~~~~  144 (268)
                      .|+.++|+||++|+|.++++.+ +  ..|++|+++.+++++.+.+.+++   +. .++    .|..+.++   +.+.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            5788999999999999877655 4  26899999999999887765343   11 122    24444312   2233333


Q ss_pred             HC--CC-CccEEEeCCC
Q 024411          145 YF--PE-GIDIYFENVG  158 (268)
Q Consensus       145 ~~--~~-~~d~v~d~~g  158 (268)
                      ..  .+ ..|++++++|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence            22  12 5788888765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0018  Score=48.74  Aligned_cols=81  Identities=11%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             CCCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeee--ecCChhhHHHHHHHHC--CC
Q 024411           78 KHGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAF--NYKEEADLNAALKRYF--PE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~--~~~~~~~~~~~~~~~~--~~  148 (268)
                      -+|+++||+||++  |+|.+++..+...|++|+++.++++..+.+.+   ..+....+  +.....+....+.+..  .+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            3689999999988  78999999999999999999988664444331   33333322  2222212333333322  23


Q ss_pred             CccEEEeCCC
Q 024411          149 GIDIYFENVG  158 (268)
Q Consensus       149 ~~d~v~d~~g  158 (268)
                      ..|+.+++++
T Consensus        83 ~~d~~v~~a~   92 (258)
T d1qsga_          83 KFDGFVHSIG   92 (258)
T ss_dssp             SEEEEEECCC
T ss_pred             ccceEEEeec
Confidence            7899998765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.99  E-value=0.0048  Score=42.92  Aligned_cols=85  Identities=14%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|.|+|. |.+|...+..++..|.+|++.++++++.+.++ +.+.. ...+.. +     .+     ...|+|+-++...
T Consensus         2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-~~~~~~~~~~~~-~-----~~-----~~~DiIilavp~~   68 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDL-S-----LL-----QTAKIIFLCTPIQ   68 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCG-G-----GG-----TTCSEEEECSCHH
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-Hhhccceeeeec-c-----cc-----cccccccccCcHh
Confidence            4788997 99999999889999999999999999999888 77753 332211 1     11     2489999888754


Q ss_pred             hHHhHHH----hhhcCCEEEEEc
Q 024411          161 LLDAVLP----NMKIRGRIAACG  179 (268)
Q Consensus       161 ~~~~~~~----~l~~~G~~v~~g  179 (268)
                      .....++    .+.++..++.++
T Consensus        69 ~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          69 LILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEECC
T ss_pred             hhhhhhhhhhhhcccccceeecc
Confidence            4444444    344455555554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.96  E-value=0.0017  Score=48.10  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCee--eecCChhhHHHHHHH
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDEA--FNYKEEADLNAALKR  144 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~v--~~~~~~~~~~~~~~~  144 (268)
                      .+...+.++++++||=+|+  |.|..+..+++. +.+|++++.|+...+.+++.   .+...+  +..+.. ++     .
T Consensus         7 ~l~~~~~~~~~~rILDiGc--GtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~-~~-----~   77 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGA--GAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SL-----P   77 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESC--TTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BC-----C
T ss_pred             HHHHHhCCCCCCEEEEeCC--cCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccc-cc-----c
Confidence            3456778999999999996  457777777764 68999999999887776532   233322  211111 11     0


Q ss_pred             HCCCCccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEc
Q 024411          145 YFPEGIDIYFENVG-----G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       145 ~~~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ...+.||+|+.+-.     .  ..++.+.+.|+|+|+++...
T Consensus        78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            11237999885332     1  45889999999999987753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0059  Score=42.13  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=72.7

Q ss_pred             HHHHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHH
Q 024411           66 TAYVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        66 ~a~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  144 (268)
                      +.+.++.+..+ +-.|+++.|.| .|-+|...++.++.+|++|+++...+.+.-++. .-|. .+.      .+.+.+  
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~-~v~------~~~~a~--   77 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGY-EVT------TMDEAC--   77 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTC-EEC------CHHHHT--
T ss_pred             hHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCce-Eee------ehhhhh--
Confidence            34455545444 46899999999 599999999999999999999998886655444 3333 222      222222  


Q ss_pred             HCCCCccEEEeCCChh--hHHhHHHhhhcCCEEEEEcc
Q 024411          145 YFPEGIDIYFENVGGK--LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g~  180 (268)
                         ...|+++-++|+.  .-...++.|+++..+..+|-
T Consensus        78 ---~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Gh  112 (163)
T d1li4a1          78 ---QEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGH  112 (163)
T ss_dssp             ---TTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSS
T ss_pred             ---hhccEEEecCCCccchhHHHHHhccCCeEEEEecc
Confidence               1479999999983  33578888999888888776

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.0016  Score=48.52  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++.+||=.|+  |.|..+..+++ .|++|++++.++...+.++ +.+....+..+.. ++.     ...+.+|+|+..
T Consensus        40 ~~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~~~-~l~-----~~~~~fD~ii~~  109 (246)
T d2avna1          40 LKNPCRVLDLGG--GTGKWSLFLQE-RGFEVVLVDPSKEMLEVAR-EKGVKNVVEAKAE-DLP-----FPSGAFEAVLAL  109 (246)
T ss_dssp             CCSCCEEEEETC--TTCHHHHHHHT-TTCEEEEEESCHHHHHHHH-HHTCSCEEECCTT-SCC-----SCTTCEEEEEEC
T ss_pred             cCCCCEEEEECC--CCchhcccccc-cceEEEEeecccccccccc-ccccccccccccc-ccc-----cccccccceeee
Confidence            557788998886  46888888876 5899999999999999998 6565555444432 221     112479988864


Q ss_pred             CC------h--hhHHhHHHhhhcCCEEEEE
Q 024411          157 VG------G--KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g------~--~~~~~~~~~l~~~G~~v~~  178 (268)
                      ..      +  ..+..+.+.|+|||.++..
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            33      2  3577888999999988764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.0031  Score=47.51  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc-----C-CCeeeecCChhhHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKF-----G-FDEAFNYKEEADLNAALKR  144 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~-----g-~~~v~~~~~~~~~~~~~~~  144 (268)
                      ...+++||++||=.|+  |.|.++..+|+..|.  +|+.++.+++..+.+++.+     + .+++.....  +..+   .
T Consensus        90 ~~l~i~PG~~VLE~G~--GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~--d~~~---~  162 (264)
T d1i9ga_          90 HEGDIFPGARVLEAGA--GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS--DLAD---S  162 (264)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS--CGGG---C
T ss_pred             HHhCCCCCCEEEecCc--CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec--cccc---c
Confidence            4568999999998885  558899999999875  9999999999888887422     1 122211111  1110   0


Q ss_pred             HCCC-CccEEE-eCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 YFPE-GIDIYF-ENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~~~-~~d~v~-d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ..++ .||.|+ |.... ..+..+.+.|+|+|+++.+..
T Consensus       163 ~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         163 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             cccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence            1123 799665 54444 788999999999999988743

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.021  Score=38.80  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCC--HHHH-HHHHHhcCCCeeeecCChhhH---HH------------
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLG--CYVVGSAGS--KDKV-DLLKNKFGFDEAFNYKEEADL---NA------------  140 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g--~~V~~~~~~--~~~~-~~~~~~~g~~~v~~~~~~~~~---~~------------  140 (268)
                      ++|.|+|+||++|..+..+.+...  ++|+....+  -+.+ +.+. ++.+..++-.++. .+   ..            
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~-~f~pk~v~i~d~~-~~~~l~~~l~~~~~~~~~~   79 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCL-EFSPRYAVMDDEA-SAKLLKTMLQQQGSRTEVL   79 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHH-HHCCSEEEESSHH-HHHHHHHHHHHTTCCCEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHH-HHhhcccccccHH-HHHHHHHHhhhhccccccc
Confidence            368999999999999999999873  577776533  2333 3334 7777665544432 11   11            


Q ss_pred             ----HHHHHCCC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEE
Q 024411          141 ----ALKRYFPE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       141 ----~~~~~~~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                          .+.+.... .+|+++.+..+ ..+.-.+..++.+-++.+.
T Consensus        80 ~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          80 SGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             ESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             cChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence                12222222 68999988776 8888888888888776554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.82  E-value=0.0067  Score=41.56  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             EEEEecCcchHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQ-FAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~-l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|.++|+ |.+|.+.++ +.+.-+.+|++.++++++.+.+.++++.. +.+..+  .    +     ...|++|=|+-..
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~--~----v-----~~~Div~lavkP~   68 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP--E----L-----HSDDVLILAVKPQ   68 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC--C----C-----CTTSEEEECSCHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc--c----c-----cccceEEEecCHH
Confidence            4788897 999998877 44554479999999999988887566653 222211  1    1     1378888888766


Q ss_pred             hHHhHHHhhhcCCEEEE
Q 024411          161 LLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~  177 (268)
                      .+....+-+++.++++.
T Consensus        69 ~~~~v~~~l~~~~~~vi   85 (152)
T d1yqga2          69 DMEAACKNIRTNGALVL   85 (152)
T ss_dssp             HHHHHHTTCCCTTCEEE
T ss_pred             HHHHhHHHHhhcccEEe
Confidence            66666666666655443

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.79  E-value=0.005  Score=46.33  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=32.3

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      ...||+||++|+|.+++..+...|++|+++.++.++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            357999999999999999999999999999987553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.77  E-value=0.002  Score=49.30  Aligned_cols=102  Identities=10%  Similarity=-0.008  Sum_probs=69.4

Q ss_pred             hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC---eeeecCChhhHHHHHHH
Q 024411           71 FYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD---EAFNYKEEADLNAALKR  144 (268)
Q Consensus        71 l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~  144 (268)
                      |.....+.++.+||=+|+  |.|..+..+++..|++|++++.++...+.+++   ..|..   .++..+.. ++     .
T Consensus        59 l~~~~~l~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l-----~  130 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EI-----P  130 (282)
T ss_dssp             HHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SC-----S
T ss_pred             HHHhcCCCCCCEEEEeCC--CCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccc-cc-----c
Confidence            445567899999999996  45778888998889999999999987777663   23442   12222211 11     0


Q ss_pred             HCCCCccEEEeCC-----Ch--hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 YFPEGIDIYFENV-----GG--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~~~~~d~v~d~~-----g~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ...+.||+|+-.-     ..  ..+..+.+.|+|+|+++....
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            1123799987532     22  467899999999999887654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.77  E-value=0.0017  Score=51.13  Aligned_cols=46  Identities=28%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      -+.+|++|||+||+|-+|..++..+...|++|+++.++.++...+.
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence            3678999999999999999999988888999999999887665544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0014  Score=51.19  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcC--------------CCee--eecCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFG--------------FDEA--FNYKE  134 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g--------------~~~v--~~~~~  134 (268)
                      ...+++||++||=.|+  |.|.+++.+|+..|.  +|+.++.+++..+.+++.+.              .+.+  .+.+-
T Consensus        92 ~~l~i~pG~rVLE~Gt--GsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          92 SMMDINPGDTVLEAGS--GSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHhCCCCCCEEEEecc--cccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            4468999999998885  448899999998875  89999999998887764321              1111  11111


Q ss_pred             hhhHHHHHHHHCCCCccEEE-eCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          135 EADLNAALKRYFPEGIDIYF-ENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       135 ~~~~~~~~~~~~~~~~d~v~-d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +....+   ..+.+|.|| |.... ..+..+.+.|+|||+++.+..
T Consensus       170 ~-~~~~~~---~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         170 S-GATEDI---KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             T-CCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             h-hccccc---CCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeC
Confidence            1 111111   112588665 54444 688999999999999988743

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.74  E-value=0.0072  Score=41.44  Aligned_cols=85  Identities=13%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +|.++|+ |.+|.+.+.-+...|.++++..+++++.+.+.+++|...+-      +..+.+.     ..|+|+=|+-...
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~------~~~~~~~-----~~dvIilavkp~~   69 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM------SHQDLID-----QVDLVILGIKPQL   69 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS------SHHHHHH-----TCSEEEECSCGGG
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec------hhhhhhh-----ccceeeeecchHh
Confidence            4778897 99999888877777889999999999888876577764322      2222333     3899999998777


Q ss_pred             HHhHHHhhhcCCEEEEE
Q 024411          162 LDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       162 ~~~~~~~l~~~G~~v~~  178 (268)
                      +...++.++++..++.+
T Consensus        70 ~~~vl~~l~~~~~iis~   86 (152)
T d2ahra2          70 FETVLKPLHFKQPIISM   86 (152)
T ss_dssp             HHHHHTTSCCCSCEEEC
T ss_pred             HHHHhhhcccceeEecc
Confidence            78888888887766655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0011  Score=49.10  Aligned_cols=99  Identities=8%  Similarity=-0.039  Sum_probs=64.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCChhhHHHHHHHHCCCCccEE-
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF--DEAFNYKEEADLNAALKRYFPEGIDIY-  153 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~~~d~v-  153 (268)
                      ..+|.+||-+|+  |.|..+..+++..+.+|++++.++...+.+++....  ..+.....  +..........+.||.+ 
T Consensus        51 ~~~g~~VLdIGc--G~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          51 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG--LWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES--CHHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEeec--cchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccc--ccccccccccccccccee
Confidence            367889999995  567888888887777999999999999888743321  11111111  22222222223479877 


Q ss_pred             EeCCCh-----------hhHHhHHHhhhcCCEEEEEc
Q 024411          154 FENVGG-----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       154 ~d~~g~-----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|....           ..+..+.+.|+|||+++...
T Consensus       127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            465432           14567889999999987653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.72  E-value=0.0025  Score=46.92  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe--eeecCChhhHHHHHHHHC
Q 024411           72 YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE--AFNYKEEADLNAALKRYF  146 (268)
Q Consensus        72 ~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~~  146 (268)
                      .+.++++++++||=+|+  |.|..+..+++ .|.+|++++.+++..+.+++.   .+...  .+..+.. ++     ...
T Consensus         8 l~~~~l~~~~rVLDiGc--G~G~~~~~l~~-~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l-----~~~   78 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVAT--GGGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QM-----PFT   78 (231)
T ss_dssp             HHHHTCCSCCEEEEETC--TTCHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-----CSC
T ss_pred             HHhcCCCCcCEEEEecc--cCcHHHHHHHH-hCCEEEEEECCHHHHhhhhhcccccccccccccccccc-cc-----ccc
Confidence            35678999999999996  35766666664 478999999999877776532   34432  2222221 11     011


Q ss_pred             CCCccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYFENVG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+.||+|+..-.     .  ..+..+.+.|+|||+++....
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            237999975432     2  467899999999999887643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.70  E-value=0.0058  Score=44.93  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHH--
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRY--  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~--  145 (268)
                      .+.+..+.++||=+|  .++|..++.++..+  +.+|+.+..+++..+.+++   +.|....+..... +..+.+.+.  
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g-~a~~~L~~l~~  129 (227)
T d1susa1          53 MLLKLINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIK  129 (227)
T ss_dssp             HHHHHHTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHH
T ss_pred             HHHHhcCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh-HHHHHHHHHHh
Confidence            344556778999999  57788888998876  4599999999988777763   2355432322222 333333332  


Q ss_pred             ---CCCCccEEE-eCCCh---hhHHhHHHhhhcCCEEEEEcc
Q 024411          146 ---FPEGIDIYF-ENVGG---KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 ---~~~~~d~v~-d~~g~---~~~~~~~~~l~~~G~~v~~g~  180 (268)
                         ..+.||++| |+--.   ..+..++++|++||.++.-..
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence               234799886 54432   467899999999998887543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.64  E-value=0.0048  Score=43.88  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-eeeecCChhhHHHHHHHHCCCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-EAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ..+++++++||=+|+  |.|..++.+++. +.+|++++.+++..+.+++   +.|.. .+--...  +..+....  .+.
T Consensus        28 ~l~~~~g~~VLDiGc--GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g--da~~~~~~--~~~  100 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGC--GTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG--DAPEALCK--IPD  100 (186)
T ss_dssp             HHCCCTTCEEEEESC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES--CHHHHHTT--SCC
T ss_pred             hcCCCCCCEEEEEEC--CeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC--chhhcccc--cCC
Confidence            357899999999986  346667777764 5699999999998877763   34543 2211111  22222211  137


Q ss_pred             ccEEEeCCCh----hhHHhHHHhhhcCCEEEEEc
Q 024411          150 IDIYFENVGG----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       150 ~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|.++-..+.    ..+..+.+.|+|+|+++...
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            9988754332    45678888999999987653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.59  E-value=0.0063  Score=39.41  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCeeee--cCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD-KVDLLKNKFGFDEAFN--YKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+++|||.|+ |.+|..-++.+...|++|++++.... ....+. +-+......  +... ++         .++++++-
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-dl---------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWA-NEGMLTLVEGPFDET-LL---------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-TTTSCEEEESSCCGG-GG---------TTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-hcCCceeeccCCCHH-Hh---------CCCcEEee
Confidence            4689999998 99999999999999999988875433 222222 122212221  1111 11         25899999


Q ss_pred             CCChhhH-HhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      +.+...+ .......++.|.+|.+..
T Consensus        79 at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            9988555 577788889999988754

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.59  E-value=0.0033  Score=48.95  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=46.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAG-----SKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~-----~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      .|||+||+|-+|..++..+...|.+|+++++     ..++...+. ..+.-..+  |..+.+.+.+.++..   ++|+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~~~~l~~~~~~~---~~d~Vi   77 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITKY---MPDSCF   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHH---CCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-ccCCcEEEEcccCCHHHHHHHHHhc---CCceEE
Confidence            6999999999999999999888999999862     112333443 33222222  333331333333321   689999


Q ss_pred             eCCC
Q 024411          155 ENVG  158 (268)
Q Consensus       155 d~~g  158 (268)
                      .+++
T Consensus        78 h~aa   81 (338)
T d1orra_          78 HLAG   81 (338)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9876

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.004  Score=45.90  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-------------------eecCCh
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEA-------------------FNYKEE  135 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v-------------------~~~~~~  135 (268)
                      ..+.++.+||..|+ | .|..+..+++ .|++|++++.|+...+.++++.+....                   ++....
T Consensus        41 l~~~~~~rvLd~GC-G-~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          41 LKGKSGLRVFFPLC-G-KAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             HTTCCSCEEEETTC-T-TCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             cCCCCCCEEEEeCC-C-CcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            45778899999997 3 4777777776 699999999999998888744432110                   000000


Q ss_pred             hhHHHHHHHHCCCCccEEEeCCCh---------hhHHhHHHhhhcCCEEEEEcc
Q 024411          136 ADLNAALKRYFPEGIDIYFENVGG---------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       136 ~~~~~~~~~~~~~~~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       ++. .+.....+.+|+|+++..-         ..+..+.++|+|+|+++....
T Consensus       118 -d~~-~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         118 -SIF-DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             -CGG-GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -chh-hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence             110 1111112368999986531         245788999999999776644

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.014  Score=43.55  Aligned_cols=95  Identities=21%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      .+++++||=.|+ | .|..++.++ ..|++|++++.++...+.+++   ..+....+-..   +....+   ..+.||+|
T Consensus       118 ~~~g~~VLDiGc-G-sG~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~---d~~~~~---~~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGT-G-SGVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG---SLEAAL---PFGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETC-T-TSHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES---CHHHHG---GGCCEEEE
T ss_pred             cCccCEEEEccc-c-hhHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCceeEEec---cccccc---cccccchh
Confidence            689999999997 3 366666555 578999999999998877763   23443222111   222211   12479999


Q ss_pred             EeCCCh----hhHHhHHHhhhcCCEEEEEcc
Q 024411          154 FENVGG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       154 ~d~~g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +.....    ..+....+.|+|+|++++.|.
T Consensus       189 ~ani~~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         189 VANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            865443    245678889999999998765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.53  E-value=0.00096  Score=52.71  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      .+++|||+||+|-+|..+++.+...|.+|++++++..+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            46899999999999999999999999999999986653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.0017  Score=48.23  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=32.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++++||+||++++|.++++.+...|++|++++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            468999999999999999999999999999998754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0027  Score=39.65  Aligned_cols=36  Identities=19%  Similarity=0.100  Sum_probs=31.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++++|+|+|. |..|+++++++..+|++|++.+.++.
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4678999998 99999999999999999999997543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.013  Score=43.52  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHCCC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ......+..+||=.|+ | .|..+..+++ .|++|++++.|++..+.+++..   +.. ..+..+.. ++.      .++
T Consensus        35 ~~~~~~~~~~iLDiGc-G-tG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~-~l~------~~~  104 (251)
T d1wzna1          35 KEDAKREVRRVLDLAC-G-TGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL-EIA------FKN  104 (251)
T ss_dssp             HHTCSSCCCEEEEETC-T-TCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG-GCC------CCS
T ss_pred             HHhcCCCCCEEEEeCC-C-CCccchhhcc-cceEEEEEeeccccccccccccccccccchheehhhh-hcc------ccc
Confidence            3345667789999997 3 3777777766 6899999999999888877432   222 22322221 211      123


Q ss_pred             CccEEEeCCCh----------hhHHhHHHhhhcCCEEEE
Q 024411          149 GIDIYFENVGG----------KLLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       149 ~~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~  177 (268)
                      .||.|+...+.          ..+..+.++|+|+|.++.
T Consensus       105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            79998865321          246788899999998875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.006  Score=48.76  Aligned_cols=32  Identities=16%  Similarity=0.084  Sum_probs=29.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEe
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSA  111 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~  111 (268)
                      |.+|||+||+|-+|..++..+...|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57899999999999999999999999999986

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.32  E-value=0.0048  Score=46.96  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS-KDKVDLL  120 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~-~~~~~~~  120 (268)
                      .+||+||++|+|.++++.+...|++|++.+++ +++.+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~   43 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL   43 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHH
Confidence            56899999999999999999999999988754 4444443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0079  Score=48.16  Aligned_cols=105  Identities=22%  Similarity=0.337  Sum_probs=68.0

Q ss_pred             HHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc----------CCC--e-eeec
Q 024411           67 AYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF----------GFD--E-AFNY  132 (268)
Q Consensus        67 a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~----------g~~--~-v~~~  132 (268)
                      ..+.+ +..++++++++|=+|+  |+|..+.++|+..|+ +|++++.++...+.+++..          +..  . .+..
T Consensus       205 i~~Il-~~l~Lkpgd~fLDLGC--G~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         205 LSDVY-QQCQLKKGDTFMDLGS--GVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHH-HHTTCCTTCEEEEESC--TTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHH-HHhCCCCCCEEEeCCC--CCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            34444 5568999999999984  789999999999987 8999999998777765211          111  0 1111


Q ss_pred             C----ChhhHHHHHHHHCCCCccEEEeC-C--Ch---hhHHhHHHhhhcCCEEEEEc
Q 024411          133 K----EEADLNAALKRYFPEGIDIYFEN-V--GG---KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~d~v~d~-~--g~---~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .    ..+.+...+     ..+|+++-. .  +.   ..+..+.+.|+|||++|..-
T Consensus       282 ~~~f~~~~~~d~~~-----~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELI-----PQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHG-----GGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhcccccccc-----ccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            1    110121111     136777632 2  11   35778889999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.30  E-value=0.035  Score=37.98  Aligned_cols=99  Identities=20%  Similarity=0.156  Sum_probs=72.1

Q ss_pred             HHHhhhhcC-CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC
Q 024411           68 YVGFYEVCS-PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        68 ~~~l~~~~~-~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~  146 (268)
                      +.++.+..+ +-.|++++|.|= |-+|.-.++-++.+|++|+++...|-+.-++. .-|. .+.      ...+.+    
T Consensus        10 ~d~i~r~t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf-~v~------~~~~a~----   76 (163)
T d1v8ba1          10 PDGLMRATDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGF-NVV------TLDEIV----   76 (163)
T ss_dssp             HHHHHHHHCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTC-EEC------CHHHHT----
T ss_pred             HHHHHHHhCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCC-ccC------chhHcc----
Confidence            344444433 578999999995 99999999999999999999998886544443 2222 232      222222    


Q ss_pred             CCCccEEEeCCChh-h-HHhHHHhhhcCCEEEEEcc
Q 024411          147 PEGIDIYFENVGGK-L-LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       147 ~~~~d~v~d~~g~~-~-~~~~~~~l~~~G~~v~~g~  180 (268)
                       ...|+++-++|+. . -...++.|+.+..+..+|-
T Consensus        77 -~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GH  111 (163)
T d1v8ba1          77 -DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGH  111 (163)
T ss_dssp             -TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             -ccCcEEEEcCCCCccccHHHHHHhhCCeEEEeccc
Confidence             2489999999984 3 4677899999998888876

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.26  E-value=0.019  Score=44.71  Aligned_cols=39  Identities=8%  Similarity=-0.011  Sum_probs=32.3

Q ss_pred             CCcEEEEec--CcchHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 024411           79 HGECVFISA--ASGAVGQLVGQFAKLLGCYVVGSAGSKDKV  117 (268)
Q Consensus        79 ~~~~vlI~g--a~g~~G~~~i~l~~~~g~~V~~~~~~~~~~  117 (268)
                      +++..||+|  ++.|+|.++++.+...|++|+++.++....
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~   41 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN   41 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhh
Confidence            357789999  446999999999999999999998766543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.21  E-value=0.0053  Score=43.73  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF  124 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~  124 (268)
                      +|.|+||+|++|.++++.+...|++|++..|++++.+.+.++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i   44 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4778877899999999999999999999999998877765333

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.21  E-value=0.0087  Score=39.89  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-ecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAF-NYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +++|+|+ |.+|..+++.+...|.+|++++.++++.+.++ ..+...++ |..+. +   .+.+..-..+|.++-+++.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-~~~~~~~~gd~~~~-~---~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATHAVIANATEE-N---ELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-TTCSEEEECCTTCT-T---HHHHHTGGGCSEEEECCCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-HhCCcceeeecccc-h---hhhccCCccccEEEEEcCc
Confidence            4788887 99999999999999999999999999999887 66654322 22222 2   3333322258888877764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00097  Score=49.50  Aligned_cols=75  Identities=21%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .+.+|||+||+|.+|..+++.+...|.  +|+++.|++.+...-. .-.... ..|..+.    +.+.... .++|+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-~~~i~~~~~D~~~~----~~~~~~~-~~~d~vi~   86 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKL----DDYASAF-QGHDVGFC   86 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGG----GGGGGGG-SSCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-cceeeeeeeccccc----ccccccc-cccccccc
Confidence            346899999999999999999988785  8999998654322111 111111 2233321    1222222 25899999


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      |+|.
T Consensus        87 ~~~~   90 (232)
T d2bkaa1          87 CLGT   90 (232)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9874

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.04  E-value=0.0031  Score=47.34  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      +.|||+||++++|.++++.+...|++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            46899999999999999999999999999997643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.079  Score=41.00  Aligned_cols=100  Identities=19%  Similarity=0.206  Sum_probs=67.1

Q ss_pred             hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh----------cCC--C--eeeec--CC
Q 024411           72 YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNK----------FGF--D--EAFNY--KE  134 (268)
Q Consensus        72 ~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~----------~g~--~--~v~~~--~~  134 (268)
                      ....++++++.+|=.|+  |.|..+.++|+..++ ++++++.++...+.+++.          +|.  .  ..+..  ..
T Consensus       144 ~~~~~l~~~~~vlD~Gc--G~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         144 IDEIKMTDDDLFVDLGS--GVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHSCCCTTCEEEEETC--TTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHcCCCCCCEEEEcCC--CCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            35678999999999984  679999999999988 799999999876665421          122  1  12222  22


Q ss_pred             hhhHHHHHHHHCCCCccEEEe-CCC--h---hhHHhHHHhhhcCCEEEEEc
Q 024411          135 EADLNAALKRYFPEGIDIYFE-NVG--G---KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       135 ~~~~~~~~~~~~~~~~d~v~d-~~g--~---~~~~~~~~~l~~~G~~v~~g  179 (268)
                      . .+.+.+.+     +|+++- ...  .   ..+....+.|+|||++|..-
T Consensus       222 ~-~~~~~~~~-----advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         222 E-EWRERIAN-----TSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             H-HHHHHHHH-----CSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             c-ccccccCc-----ceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            2 34433332     677763 221  1   35677888899999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.98  E-value=0.023  Score=39.48  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=60.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|+|+|. |.+|...+.-++..|.  +|++.+++++..+.++ +.+.. ........  .       .....|+++-|+.
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~~~~~~~~~~~--~-------~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAK--V-------EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGG--G-------GGTCCSEEEECSC
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-Hhhcchhhhhhhhh--h-------hccccccccccCC
Confidence            6899997 9999999988988885  8999999999999998 77763 33221111  0       0014788888887


Q ss_pred             hhh----HHhHHHhhhcCCEEEEEcc
Q 024411          159 GKL----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~~~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      ...    +....+.++++..++.++.
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             chhhhhhhhhhhcccccccccccccc
Confidence            533    3444455555666666554

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.02  Score=38.17  Aligned_cols=74  Identities=16%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             EEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKL-LGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~-~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  160 (268)
                      +|.|.|++|-+|..+++.... .+.++.......+...... .                        .++|+++|++-.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~-~------------------------~~~DvvIDFS~p~   55 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLT-D------------------------GNTEVVIDFTHPD   55 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHH-T------------------------TTCSEEEECCCTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhc-c------------------------ccCCEEEEcccHH
Confidence            588999999999998888765 4567776653322222221 1                        2466777777666


Q ss_pred             hHHhHHHhhhcCCEEEEEcc
Q 024411          161 LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       161 ~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .....++.+...|.=+.+|.
T Consensus        56 ~~~~~~~~~~~~~~~~ViGT   75 (135)
T d1yl7a1          56 VVMGNLEFLIDNGIHAVVGT   75 (135)
T ss_dssp             THHHHHHHHHHTTCEEEECC
T ss_pred             HHHHHHHHHHhcCCCEEEec
Confidence            66555555555555555554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.94  E-value=0.012  Score=44.40  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      +|||+||+|-+|..++..++..|.+|++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            48999999999999999999999999999865

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.91  E-value=0.028  Score=40.11  Aligned_cols=86  Identities=20%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|- |.+|..++++++.+|++|++.++.......   ..+.    ..  . ++.+.+++     .|++.-++.
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~---~~~~----~~--~-~l~~~l~~-----sDii~~~~p  105 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKGY----YV--D-SLDDLYKQ-----ADVISLHVP  105 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTTC----BC--S-CHHHHHHH-----CSEEEECSC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccc---ccee----ee--c-cccccccc-----cccccccCC
Confidence            4789999997 999999999999999999999865443222   1111    11  1 45555554     788887765


Q ss_pred             h-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          159 G-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      . +    .+ ...++.|+++..+|.++-
T Consensus       106 lt~~T~~li~~~~l~~mk~~a~lIN~sR  133 (197)
T d1j4aa1         106 DVPANVHMINDESIAKMKQDVVIVNVSR  133 (197)
T ss_dssp             CCGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             ccccccccccHHHHhhhCCccEEEecCc
Confidence            2 2    12 466788888888888755

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.90  E-value=0.0067  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      +.+||+||+|-+|..++..+...|.+|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            579999999999999999999999999999974

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.016  Score=45.14  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhc---CCCee-eecCChhhHHHHHHHHCCCCccEE
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAG----SKDKVDLLKNKF---GFDEA-FNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~----~~~~~~~~~~~~---g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      +|||+||+|-+|..++..+...|.+|+++++    ......... ..   +...+ .|..+.+.+.+.++.   .++|+|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~---~~~d~V   77 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIE-RLGGKHPTFVEGDIRNEALMTEILHD---HAIDTV   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHH-HHHTSCCEEEECCTTCHHHHHHHHHH---TTCSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHH-hhcCCCCEEEEeecCCHHHHHHHHhc---cCCCEE
Confidence            4999999999999999999999999999864    222222222 22   22211 233333133333432   269999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.+++
T Consensus        78 iHlAa   82 (338)
T d1udca_          78 IHFAG   82 (338)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.90  E-value=0.009  Score=43.91  Aligned_cols=101  Identities=17%  Similarity=0.119  Sum_probs=66.5

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCC---CeeeecCChhhHHHHHHHHCCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGF---DEAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...++||++||=.|+  |.|..+..+++..|.  +|++++.++...+.+++....   ...+..+..  ....... ..+
T Consensus        68 ~l~i~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~--~~~~~~~-~~~  142 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDAT--KPEEYRA-LVP  142 (227)
T ss_dssp             CCCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTT--CGGGGTT-TCC
T ss_pred             ccccCCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECC--Ccccccc-ccc
Confidence            346899999999996  448888999998864  999999999988887733322   122222221  1111111 112


Q ss_pred             CccEEEeCCC---h--hhHHhHHHhhhcCCEEEEEc
Q 024411          149 GIDIYFENVG---G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       149 ~~d~v~d~~g---~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+|+++....   .  ..+..+.+.|+|+|++++.-
T Consensus       143 ~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence            6887775433   2  35788889999999988753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.88  E-value=0.02  Score=41.51  Aligned_cols=94  Identities=18%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-eeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD-EAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+.++.+||=+|+  |.|..+..+++ .|.+|++++.|++..+.+++.   .+.. ..+..+.. ++.     ...+.+|
T Consensus        34 ~l~~~~~ILDiGc--G~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~-~l~-----~~~~~fD  104 (226)
T d1ve3a1          34 YMKKRGKVLDLAC--GVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-KLS-----FEDKTFD  104 (226)
T ss_dssp             SCCSCCEEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT-SCC-----SCTTCEE
T ss_pred             hcCCCCEEEEECC--CcchhhhhHhh-hhcccccccccccchhhhhhhhccccccccccccccc-ccc-----ccCcCce
Confidence            3578899999997  34777788776 588999999999988877632   2322 22222211 110     0113799


Q ss_pred             EEEeCCC-----h----hhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVG-----G----KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+-...     .    ..+..+.+.|+|||+++..
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            8875322     1    2477889999999998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.88  E-value=0.064  Score=36.75  Aligned_cols=86  Identities=13%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|-|+|. |.+|...+.-+...|.+|++.++++++.+.+. +.+....   .   +..+.+++     .|+++-|+.. +
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~~---~---~~~e~~~~-----~d~ii~~v~~~~   68 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAETA---S---TAKAIAEQ-----CDVIITMLPNSP   68 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC---S---SHHHHHHH-----CSEEEECCSSHH
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhhhhc---c---cHHHHHhC-----CCeEEEEcCCHH
Confidence            3778886 99999999888889999999999999999888 6665321   1   33334443     7899999875 4


Q ss_pred             hHHh-------HHHhhhcCCEEEEEcc
Q 024411          161 LLDA-------VLPNMKIRGRIAACGM  180 (268)
Q Consensus       161 ~~~~-------~~~~l~~~G~~v~~g~  180 (268)
                      ..+.       ....++++..++..+.
T Consensus        69 ~v~~v~~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          69 HVKEVALGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHhCCcchhhccCCCCEEEECCC
Confidence            4433       3444556666666654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0085  Score=47.24  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      +.+||+||+|-+|..++..+...|.+|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6789999999999999999999999999999754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.84  E-value=0.025  Score=42.40  Aligned_cols=95  Identities=18%  Similarity=0.092  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC---eeeecCChhhHHHHHHHHCCC-
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFD---EAFNYKEEADLNAALKRYFPE-  148 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~~~~-  148 (268)
                      .+++|++||-.+|  |+|..++.+|+.-+++|++++.++...+.+++.   .+..   .+++.+..        +..+. 
T Consensus       104 ~~~~g~~VlD~~a--G~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~--------~~~~~~  173 (260)
T d2frna1         104 VAKPDELVVDMFA--GIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR--------DFPGEN  173 (260)
T ss_dssp             HCCTTCEEEETTC--TTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT--------TCCCCS
T ss_pred             hcCCccEEEECcc--eEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchH--------HhccCC
Confidence            3689999999885  567778888887556999999999988877632   2442   23333321        12223 


Q ss_pred             CccEE-EeCCC-h-hhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIY-FENVG-G-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v-~d~~g-~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+|.| ++... . ..+..+++.++++|.+.....
T Consensus       174 ~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         174 IADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             CEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCchHHHHHHHHhhcCCCCEEEEEec
Confidence            68855 45433 3 677889999999998766544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.83  E-value=0.017  Score=40.51  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=38.9

Q ss_pred             HHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           69 VGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        69 ~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      .+|.....--++++|+|+|+ |+.+.+++..+...| +|+++.|+.++.+.+.
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHH
T ss_pred             HHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHH
Confidence            44444433457789999997 999998887776655 9999999999877664

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.024  Score=42.62  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      ..++.+||=+|+  |.|..+..+++.. +.++++++.++...+.+++.......+..+.. ++     ....+.+|+|+.
T Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~-~l-----~~~~~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGC--GEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RL-----PFSDTSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETC--TTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SC-----SBCTTCEEEEEE
T ss_pred             CCCCCEEEEeCC--CCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehh-hc-----cCCCCCEEEEee
Confidence            467788999986  4577777787765 57999999999998888833322222222211 11     011236999997


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ......+.++.+.|+|+|.++....
T Consensus       154 ~~~~~~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         154 IYAPCKAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ESCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHhCCCcEEEEEee
Confidence            6666778899999999999987754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.78  E-value=0.024  Score=43.16  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC-------CC--eeeecCChhhHHHHHHHHCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFG-------FD--EAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g-------~~--~v~~~~~~~~~~~~~~~~~~  147 (268)
                      .+.++|||+|+  |-|..+-.++++.+. +|.++.-.++-.+.+++-+.       ..  .++..    +-...+++...
T Consensus        79 ~~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~----Da~~~l~~~~~  152 (290)
T d1xj5a_          79 PNPKKVLVIGG--GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG----DGVAFLKNAAE  152 (290)
T ss_dssp             SCCCEEEEETC--SSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES----CHHHHHHTSCT
T ss_pred             CCCcceEEecC--CchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc----cHHHHHhhccc
Confidence            34578999995  346667778887775 89999999888888873331       11  12221    34445555444


Q ss_pred             CCccEEE-eCCCh----------hhHHhHHHhhhcCCEEEEEc
Q 024411          148 EGIDIYF-ENVGG----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 ~~~d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.+|+|+ |+...          +.++.+.++|+++|.++.-.
T Consensus       153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            4899775 55431          24778899999999988754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.0065  Score=46.51  Aligned_cols=96  Identities=11%  Similarity=0.001  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-----eeeecCChhhHHHHHHHHCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-----EAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-----~v~~~~~~~~~~~~~~~~~~  147 (268)
                      +.+++.+||=.|+  |.|..++.+++. |++|++++.|++.++.+++..   +..     ..+...   ++...-.....
T Consensus        53 ~~~~~~~vLD~Gc--G~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  126 (292)
T d1xvaa_          53 RQHGCHRVLDVAC--GTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA---NWLTLDKDVPA  126 (292)
T ss_dssp             HHTTCCEEEESSC--TTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC---CGGGHHHHSCC
T ss_pred             hhcCCCEEEEecC--CCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeec---cccccccccCC
Confidence            3456789999986  457788888875 899999999999888776322   211     011111   11111122222


Q ss_pred             -CCccEEEeCCCh---------------hhHHhHHHhhhcCCEEEE
Q 024411          148 -EGIDIYFENVGG---------------KLLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       148 -~~~d~v~d~~g~---------------~~~~~~~~~l~~~G~~v~  177 (268)
                       +.+|.|+.....               ..+..+.+.|+|+|.++.
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence             379988753221               257889999999999876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.59  E-value=0.02  Score=41.00  Aligned_cols=79  Identities=18%  Similarity=0.292  Sum_probs=55.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.|.+|+|.|- |.+|..+++++...|++|++.+.+..+..... .++... +...   ++       ..-.+|+++=|+
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~-~~g~~~-~~~~---~~-------~~~~~DI~iPcA   91 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHTA-VALE---DV-------LSTPCDVFAPCA   91 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE-CCGG---GG-------GGCCCSEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHH-hhcccc-cCcc---cc-------ccccceeeeccc
Confidence            36889999996 99999999999999999999998888888887 777642 2221   11       112578887665


Q ss_pred             Ch-hhHHhHHHhh
Q 024411          158 GG-KLLDAVLPNM  169 (268)
Q Consensus       158 g~-~~~~~~~~~l  169 (268)
                      .+ ..-....+.+
T Consensus        92 ~~~~I~~~~a~~i  104 (201)
T d1c1da1          92 MGGVITTEVARTL  104 (201)
T ss_dssp             CSCCBCHHHHHHC
T ss_pred             ccccccHHHHhhh
Confidence            54 3223344444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.11  Score=35.04  Aligned_cols=78  Identities=12%  Similarity=-0.015  Sum_probs=52.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC--CccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE--GIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~--~~d~v~d~~g  158 (268)
                      ++|.|+|+.|.+|...+..++..|.+|.+.++++....... ..+++.++...........+.+..+.  .=.+++|+.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-LANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-HTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-hhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            57999997799999999999999999999998776555444 44555544333321333344443332  1247788877


Q ss_pred             h
Q 024411          159 G  159 (268)
Q Consensus       159 ~  159 (268)
                      .
T Consensus        89 v   89 (152)
T d2pv7a2          89 V   89 (152)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.057  Score=41.97  Aligned_cols=75  Identities=19%  Similarity=0.151  Sum_probs=46.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHH--hcCCCe-eeecCChhhHHHHHHHHCCCCccEE
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS----KDKVDLLKN--KFGFDE-AFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~----~~~~~~~~~--~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      +.|||+||+|-+|..++..+...|.+|+++++.    .+.......  .-+... ..|..+.+.+...+..   -++|+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---~~~d~V   78 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE---YKIDSV   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH---SCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhc---cCCCEE
Confidence            579999999999999999999999999998631    122222210  112221 2233333133333332   169999


Q ss_pred             EeCCC
Q 024411          154 FENVG  158 (268)
Q Consensus       154 ~d~~g  158 (268)
                      +.+++
T Consensus        79 ihlAa   83 (347)
T d1z45a2          79 IHFAG   83 (347)
T ss_dssp             EECCS
T ss_pred             EEccc
Confidence            99876

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.52  E-value=0.012  Score=42.59  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ..++||++||=.|+.  .|..+..+++..+. +|++++.++...+.+++..   +....+..+.. .. ... ......+
T Consensus        52 l~lkpg~~VLDlGcG--~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~-~~-~~~-~~~~~~v  126 (209)
T d1nt2a_          52 LKLRGDERVLYLGAA--SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS-KP-WKY-SGIVEKV  126 (209)
T ss_dssp             CCCCSSCEEEEETCT--TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT-CG-GGT-TTTCCCE
T ss_pred             CCCCCCCEEEEeCCc--CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeecc-Cc-ccc-ccccceE
Confidence            468999999999973  36677777877754 9999999999887775322   22222211111 10 000 0011257


Q ss_pred             cEEEeCCC---h--hhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIYFENVG---G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~d~~g---~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+++....   .  ..+..+.+.|+|+|+++..-
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            77765432   1  35778889999999988764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.50  E-value=0.011  Score=45.24  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             CCcEEEEecCcc--hHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASG--AVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g--~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      +|+++||+||+|  |+|.++++.+...|++|++..+++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            678999999876  89999999999999999999876553

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0037  Score=48.42  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      ++|||+||+|-+|..++..+...|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            57999999999999999999889999999874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.43  E-value=0.036  Score=41.28  Aligned_cols=98  Identities=10%  Similarity=0.018  Sum_probs=66.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC--CCCccEE
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF--PEGIDIY  153 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~--~~~~d~v  153 (268)
                      ...++.+||=+|+  |.|..+..++.....+|++++.++.-.+.+++.+.....+++... +    +.+..  .+.||+|
T Consensus        90 ~~~~~~~vLD~Gc--G~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-d----~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          90 PGHGTSRALDCGA--GIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILA-S----METATLPPNTYDLI  162 (254)
T ss_dssp             TTCCCSEEEEETC--TTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-C----GGGCCCCSSCEEEE
T ss_pred             CCCCCCeEEEecc--cCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEc-c----ccccccCCCccceE
Confidence            4567788999885  568888898888777999999999999999855543322222211 1    12222  2379988


Q ss_pred             EeCCC-----h----hhHHhHHHhhhcCCEEEEEcc
Q 024411          154 FENVG-----G----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       154 ~d~~g-----~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +..-.     .    ..+..+.+.|+|+|.++....
T Consensus       163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            75322     2    236788889999999887543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.43  E-value=0.023  Score=41.71  Aligned_cols=101  Identities=14%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC---CeeeecCChhhHHHHHHHHCCCC
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGF---DEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ...++||++||=+|+  |.|..+..+++... .+|++++.++...+.+++....   ...+..+.. .. ...... ...
T Consensus        69 ~l~ikpG~~VLDlGc--GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~-~~-~~~~~~-~~~  143 (230)
T d1g8sa_          69 VMPIKRDSKILYLGA--SAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN-KP-QEYANI-VEK  143 (230)
T ss_dssp             CCCCCTTCEEEEESC--CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT-CG-GGGTTT-CCC
T ss_pred             hCCCCCCCEEEEeCE--EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec-cC-cccccc-cce
Confidence            346899999999997  34677778887643 4999999999988887732211   122222221 11 111110 114


Q ss_pred             ccEEEeCCCh-----hhHHhHHHhhhcCCEEEEEc
Q 024411          150 IDIYFENVGG-----KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       150 ~d~v~d~~g~-----~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +|+++.....     ..+..+.+.|+|+|+++..-
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            5666654432     34778889999999987763

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.017  Score=38.23  Aligned_cols=71  Identities=17%  Similarity=0.068  Sum_probs=49.5

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL  161 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  161 (268)
                      +|.|+|++|-+|+...++++..+.+++.....+.             .-      .+         ..+|+++|++..+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~-------------~~------~~---------~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG-------------VE------EL---------DSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE-------------EE------EC---------SCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc-------------HH------Hh---------ccCCEEEEecCHHH
Confidence            5889999999999999999998887775542100             00      00         13788888888877


Q ss_pred             HHhHHHhhhcCCEEEEEcc
Q 024411          162 LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       162 ~~~~~~~l~~~G~~v~~g~  180 (268)
                      +...++.+...+.=+.+|.
T Consensus        54 ~~~~l~~~~~~~~p~ViGT   72 (128)
T d1vm6a3          54 LPKTVDLCKKYRAGLVLGT   72 (128)
T ss_dssp             HHHHHHHHHHHTCEEEECC
T ss_pred             HHHHHHHHHhcCCCEEEEc
Confidence            7666666666665566665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.012  Score=37.90  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ..+|.|+|+ |.+|.++++-++.+|.++++.+.+++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            356999997 99999999999999999999997654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.04  Score=40.01  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=69.4

Q ss_pred             hhhhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHH-
Q 024411           71 FYEVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKR-  144 (268)
Q Consensus        71 l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~-  144 (268)
                      |..+.+..+.++||=+|  .+.|..++.+|..+  +.+|+.++.+++..+.+++.   .|....+..... +..+.+.+ 
T Consensus        51 L~~L~~~~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G-da~e~l~~~  127 (219)
T d2avda1          51 LANLARLIQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDEL  127 (219)
T ss_dssp             HHHHHHHTTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHH
T ss_pred             HHHHHHccCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe-ehhhcchhh
Confidence            33445667788999999  56788888888876  45999999998887776632   355432222221 22222222 


Q ss_pred             ---HCCCCccEEEeCCC-h---hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 ---YFPEGIDIYFENVG-G---KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ---~~~~~~d~v~d~~g-~---~~~~~~~~~l~~~G~~v~~g~  180 (268)
                         ...+.||+||--.. .   ..+..++++|++||.++.-..
T Consensus       128 ~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         128 LAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence               22337998874333 2   357889999999998877543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.34  E-value=0.053  Score=39.55  Aligned_cols=49  Identities=20%  Similarity=0.164  Sum_probs=42.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD  127 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~  127 (268)
                      -.+.+|+|.|- |.+|..+++++...|++|++++.+..+.+.+.+..|..
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc
Confidence            46889999997 99999999999999999999999988888777566654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.31  E-value=0.041  Score=42.86  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=33.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK  116 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~  116 (268)
                      ..++|+|+||+|.+|..++..+...|.+|++++|+..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            46789999999999999999999999999999986553

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.30  E-value=0.018  Score=41.46  Aligned_cols=68  Identities=18%  Similarity=0.130  Sum_probs=43.2

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++|||+||+|-+|..++..+...|.  +|++..+++.         ....-+..... ++.+ +.....+.+|.++.|+|
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~---------~~~~~~~~~~~-d~~~-~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL---------AEHPRLDNPVG-PLAE-LLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC---------CCCTTEECCBS-CHHH-HGGGCCSCCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch---------hhccccccccc-chhh-hhhccccchheeeeeee
Confidence            6899999999999999998888886  6777765421         11111111111 3332 22233346899999987


Q ss_pred             h
Q 024411          159 G  159 (268)
Q Consensus       159 ~  159 (268)
                      .
T Consensus        72 ~   72 (212)
T d2a35a1          72 T   72 (212)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.27  E-value=0.0072  Score=43.23  Aligned_cols=100  Identities=13%  Similarity=0.074  Sum_probs=61.8

Q ss_pred             hhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe-eeecCChhhHHHHHHHHCC
Q 024411           72 YEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE-AFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        72 ~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~-v~~~~~~~~~~~~~~~~~~  147 (268)
                      .......++++||=.|+  |.|..++.+++ .+.+|++++.++...+.+++.   .+... .+..... +..+.   ...
T Consensus        45 i~~l~~~~~~~VLDiGc--G~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~-d~~~~---~~~  117 (194)
T d1dusa_          45 VENVVVDKDDDILDLGC--GYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-DLYEN---VKD  117 (194)
T ss_dssp             HHHCCCCTTCEEEEETC--TTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-STTTT---CTT
T ss_pred             HHhCCcCCCCeEEEEee--cCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEc-chhhh---hcc
Confidence            34456788999999985  45667777665 567999999999888877632   23321 1111111 11111   112


Q ss_pred             CCccEEEeCC----Chh----hHHhHHHhhhcCCEEEEE
Q 024411          148 EGIDIYFENV----GGK----LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       148 ~~~d~v~d~~----g~~----~~~~~~~~l~~~G~~v~~  178 (268)
                      +.+|+|+-..    +..    .+..+.+.|+|+|+++..
T Consensus       118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            3799888532    222    367788899999987654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.26  E-value=0.083  Score=37.17  Aligned_cols=41  Identities=10%  Similarity=0.006  Sum_probs=35.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      =++|.|+|+ |.+|...+.++...|.+|++.+.+++..+.+.
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            356899998 99999999999999999999999988766544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.20  E-value=0.045  Score=41.32  Aligned_cols=94  Identities=14%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---------------eeeecCChhhHHHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD---------------EAFNYKEEADLNAAL  142 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~---------------~v~~~~~~~~~~~~~  142 (268)
                      .+.++|||+|+  |-|..+-.++++-..+|.++.-+++-.+.+++-++..               +++..    +....+
T Consensus        71 ~~p~~vLiiG~--G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~----Da~~~l  144 (276)
T d1mjfa_          71 PKPKRVLVIGG--GDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG----DGFEFI  144 (276)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES----CHHHHH
T ss_pred             CCCceEEEecC--CchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC----hHHHHH
Confidence            45578999996  3355555666654458999998888888887433321               12222    334455


Q ss_pred             HHHCCCCccEEE-eCCCh----------hhHHhHHHhhhcCCEEEEEc
Q 024411          143 KRYFPEGIDIYF-ENVGG----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       143 ~~~~~~~~d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ++  .+.+|+|+ |+..+          +.+..+.++|+++|.++.-.
T Consensus       145 ~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 KN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            43  34799876 55432          24778999999999887643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.13  Score=34.75  Aligned_cols=95  Identities=6%  Similarity=-0.086  Sum_probs=60.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHh--cCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVD-LLKNK--FGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~-~~~~~--~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      .++++|.|. |.+|..+++.+...|.+|++++..+++.. .+.+.  .+. .++..+.  .-...+++..-+.++.++-+
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~-~vi~Gd~--~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNA-DVIPGDS--NDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTC-EEEESCT--TSHHHHHHHTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCc-EEEEccC--cchHHHHHhccccCCEEEEc
Confidence            457999998 99999999999999999999987765432 22211  233 3443333  22345555544478999988


Q ss_pred             CChh--hH--HhHHHhhhcCCEEEEE
Q 024411          157 VGGK--LL--DAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g~~--~~--~~~~~~l~~~G~~v~~  178 (268)
                      ++..  .+  ....+.+.|.-+++..
T Consensus        79 ~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          79 SDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             cccHHHHHHHHHHHHHhCCCCceEEE
Confidence            8763  22  2334445566666554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.014  Score=44.88  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ++|||+||+|-+|..++..+...|++|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4799999999999999999988899999998754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.068  Score=37.60  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=61.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.+.++.|.|. |.+|..++++++.+|.+|+..++........  ..+.. .   .   ++.+.+++     .|++.-++
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~~~~~-~---~---~l~ell~~-----sDiv~~~~  106 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--QLGIE-L---L---SLDDLLAR-----ADFISVHL  106 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--HHTCE-E---C---CHHHHHHH-----CSEEEECC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHh--hcCce-e---c---cHHHHHhh-----CCEEEEcC
Confidence            35789999997 9999999999999999999998765443332  23321 1   1   44444544     78888766


Q ss_pred             Ch-h----hH-HhHHHhhhcCCEEEEEcc
Q 024411          158 GG-K----LL-DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~----~~-~~~~~~l~~~G~~v~~g~  180 (268)
                      .. +    .+ ...++.++++..+|.++-
T Consensus       107 Plt~~T~~lin~~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CCCchhhhhhhHHHHhhhCCCceEEEecc
Confidence            52 2    12 467788888888888765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=95.09  E-value=0.034  Score=40.44  Aligned_cols=96  Identities=10%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKL---LGCYVVGSAGSKDKVDLLKNKF---GFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~---~g~~V~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ++++.+||=.|+  |.|..+..+++.   -+++|++++.|++..+.+++.+   +....+..... +    ..+...+.+
T Consensus        37 ~~~~~~vLDlGC--GtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~-d----~~~~~~~~~  109 (225)
T d1im8a_          37 VTADSNVYDLGC--SRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-D----IRHVEIKNA  109 (225)
T ss_dssp             CCTTCEEEEESC--TTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS-C----TTTCCCCSE
T ss_pred             cCCCCEEEEecc--chhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc-h----hhccccccc
Confidence            678999999996  457777777775   4779999999999998887433   22211211111 1    111112256


Q ss_pred             cEEEeCCC-------h--hhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIYFENVG-------G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+++-+..       .  ..++.+.+.|+|+|.++...
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            66654322       1  35788999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.01  Score=35.41  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ++|.|+|+ |-+|.+.++-++.+|.++++.+..++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            47899997 99999999999999999999996543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.05  E-value=0.19  Score=34.17  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             cEEEEecCcchHHH-HHHHHHHHcCC-EEEEEeC-CH--HHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           81 ECVFISAASGAVGQ-LVGQFAKLLGC-YVVGSAG-SK--DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        81 ~~vlI~ga~g~~G~-~~i~l~~~~g~-~V~~~~~-~~--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      -++.|.| +|.+|. ..+++++.... +++.+++ +.  ....+++ +++.....  .   ++...+......++|+||+
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~-~~~i~~~~--~---~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTTTY--A---GVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCEES--S---HHHHHHHSGGGGGEEEEEE
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh-hcCCcccc--c---ceeeeeecccccccCEEEE
Confidence            4789999 599986 56788876654 8888764 33  2345566 77764321  1   2222222111126999999


Q ss_pred             CCCh-hhHHhH--HHhhhcCCEEEEEc
Q 024411          156 NVGG-KLLDAV--LPNMKIRGRIAACG  179 (268)
Q Consensus       156 ~~g~-~~~~~~--~~~l~~~G~~v~~g  179 (268)
                      ++.. ......  .+.++.|-.++...
T Consensus        78 ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence            9885 555544  33454455555543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.03  E-value=0.059  Score=38.17  Aligned_cols=89  Identities=10%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.++.|+|. |.+|...+++++.+|.+|+..++......... ..+..   .+.   ++.+.+++     .|+|.-++.
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~~---~~~---~l~~ll~~-----sD~v~l~~p  112 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-SYQAT---FHD---SLDSLLSV-----SQFFSLNAP  112 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-HHTCE---ECS---SHHHHHHH-----CSEEEECCC
T ss_pred             cccceEEeec-ccchHHHHHHHHhhccccccccccccccchhh-ccccc---ccC---CHHHHHhh-----CCeEEecCC
Confidence            3799999997 99999999999999999999886544322222 22221   111   45555554     788876654


Q ss_pred             h-h-h----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G-K-L----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~-~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      . + +    =...++.|+++..+|.++-
T Consensus       113 lt~~T~~li~~~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         113 STPETRYFFNKATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             CCchHhheecHHHhhCcCCccEEEecCC
Confidence            2 2 1    1467788889888888765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.00  E-value=0.03  Score=42.24  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc----CC--C---eeeecCChhhHHHHHHHHCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF----GF--D---EAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~----g~--~---~v~~~~~~~~~~~~~~~~~~  147 (268)
                      .+.++|||+|+  |-|..+-.++++.+. +|.++.-.++-.+.+++-+    ++  +   .++..    +....+++ +.
T Consensus        74 ~~p~~vLiiGg--G~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~----D~~~~l~~-~~  146 (274)
T d1iy9a_          74 PNPEHVLVVGG--GDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD----DGFMHIAK-SE  146 (274)
T ss_dssp             SSCCEEEEESC--TTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES----CSHHHHHT-CC
T ss_pred             CCcceEEecCC--CCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec----hHHHHHhh-cC
Confidence            34578999995  446677777887765 9999999998888887333    22  1   22322    33334443 33


Q ss_pred             CCccEEE-eCCC---------h-hhHHhHHHhhhcCCEEEEEc
Q 024411          148 EGIDIYF-ENVG---------G-KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 ~~~d~v~-d~~g---------~-~~~~~~~~~l~~~G~~v~~g  179 (268)
                      ..+|+|+ |...         . +.++.+.++|+++|.++.-.
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            4899886 5432         1 34788999999999988653

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.99  E-value=0.32  Score=33.52  Aligned_cols=95  Identities=16%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeC--CHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHC----------CC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAG--SKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYF----------PE  148 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~----------~~  148 (268)
                      +|.|.|- |-+|...++.+.... .+++.+..  +......+. +++.+... .... .. ..+.+..          ..
T Consensus         4 rIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~-~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           4 KVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK-ELGIPVYA-ASEE-FI-PRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH-HTTCCEEE-SSGG-GH-HHHHHHTCCCSCBHHHHHT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhh-hcCceeec-cccc-ce-eeecccCccccchhhhhhc
Confidence            6889996 999999888886654 47776643  223445555 55544222 1111 11 1111111          02


Q ss_pred             CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEccc
Q 024411          149 GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       149 ~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      ++|+|+||+|. ...+.+..++..+-+.|..+..
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~  112 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            59999999997 7778888899999898888764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.97  E-value=0.046  Score=42.32  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHH--CCCCc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRY--FPEGI  150 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~--~~~~~  150 (268)
                      ++++++||=.++  +.|..++.+++. |+ +|+.++.++...+.+++.   .|....+..... +..+.+...  .++.|
T Consensus       143 ~~~g~~VLDl~~--g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~-d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         143 VQPGDRVLDVFT--YTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-SAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             CCTTCEEEETTC--TTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHTTCCE
T ss_pred             cCCCCeeecccC--cccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec-hhhhhhHHHHhccCCC
Confidence            678999988874  445566666654 65 899999999988877632   344221111111 333333322  22389


Q ss_pred             cEEE-eCCCh---------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          151 DIYF-ENVGG---------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       151 d~v~-d~~g~---------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |+|+ |.-..               ..+..+.++|+|||.++.+..
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9887 43211               135667889999999888754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.97  E-value=0.043  Score=38.87  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC------ee----eecCChhhHHHHHHHHCCCCc
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD------EA----FNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~------~v----~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+|.|+|+ |..|.+.+.++..-|.+|....++++..+.+. +-+..      ..    +....  ++.+.+.     +.
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~-~~~~n~~yl~~~~l~~~i~~t~--~l~~a~~-----~a   78 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVN-EKRENVLFLKGVQLASNITFTS--DVEKAYN-----GA   78 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH-HHTBCTTTSTTCBCCTTEEEES--CHHHHHT-----TC
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh-hcccccccccccccccccccch--hhhhccC-----CC
Confidence            36999998 99999999999888889999999998888776 32211      01    11111  3444443     47


Q ss_pred             cEEEeCCChhhHHhHHHhhh
Q 024411          151 DIYFENVGGKLLDAVLPNMK  170 (268)
Q Consensus       151 d~v~d~~g~~~~~~~~~~l~  170 (268)
                      |+++-++....++..++.++
T Consensus        79 d~iiiavPs~~~~~~~~~~~   98 (189)
T d1n1ea2          79 EIILFVIPTQFLRGFFEKSG   98 (189)
T ss_dssp             SCEEECSCHHHHHHHHHHHC
T ss_pred             CEEEEcCcHHHHHHHHHHHH
Confidence            99999998877666665543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.81  E-value=0.045  Score=35.47  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=34.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ....++++++|.|+ |.+|+-+++.+..+|.+|.++.+++
T Consensus        17 l~~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          17 LDYEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             HhhCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            35667899999998 9999999999999999999999764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.083  Score=36.27  Aligned_cols=95  Identities=15%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             hccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhH
Q 024411           59 ILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADL  138 (268)
Q Consensus        59 ~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  138 (268)
                      .+||.....+..|....---.|++++|.|.+.-+|.-+..++...|++|+...+...                     ++
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~---------------------~l   74 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK---------------------NL   74 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS---------------------CH
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccc---------------------hh
Confidence            445555555555654444457999999999889999999999999999987764321                     22


Q ss_pred             HHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          139 NAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       139 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .+..++     .|+++-++|.+.+- --+.++++..++.+|.
T Consensus        75 ~~~~~~-----ADivI~a~G~p~~i-~~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          75 RHHVEN-----ADLLIVAVGKPGFI-PGDWIKEGAIVIDVGI  110 (166)
T ss_dssp             HHHHHH-----CSEEEECSCCTTCB-CTTTSCTTCEEEECCC
T ss_pred             HHHHhh-----hhHhhhhccCcccc-cccccCCCcEEEecCc
Confidence            223333     78999888864321 1346678888888776

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.77  E-value=0.16  Score=34.62  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh-h
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG-K  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~  160 (268)
                      +|-++|. |.+|...+.-+...|.+|++.++++++.+.+. +.+....-      +..+.+.     ..|+++-|+.. .
T Consensus         3 kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-~~~~~~~~------~~~e~~~-----~~diii~~v~~~~   69 (162)
T d3cuma2           3 QIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-AAGASAAR------SARDAVQ-----GADVVISMLPASQ   69 (162)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCEECS------SHHHHHT-----SCSEEEECCSCHH
T ss_pred             EEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-hhhccccc------hhhhhcc-----ccCeeeecccchh
Confidence            5888886 99999888888888999999999999988887 66653221      2222222     37788887775 3


Q ss_pred             hHHhH-------HHhhhcCCEEEEEcc
Q 024411          161 LLDAV-------LPNMKIRGRIAACGM  180 (268)
Q Consensus       161 ~~~~~-------~~~l~~~G~~v~~g~  180 (268)
                      .....       ...+.++-.++..+.
T Consensus        70 ~~~~v~~~~~~~~~~l~~g~iiid~st   96 (162)
T d3cuma2          70 HVEGLYLDDDGLLAHIAPGTLVLECST   96 (162)
T ss_dssp             HHHHHHHSTTCHHHHSCTTCEEEECSC
T ss_pred             hHHHHHhccccccccCCCCCEEEECCC
Confidence            33322       333445555555544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.77  E-value=0.052  Score=41.57  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=63.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC-eee-----ecCChhhHHHHHHHHCCCCc
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFD-EAF-----NYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~-~v~-----~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ...++|||+|+  |-|..+-.++++... +|.++.-.++-.+.+++-+... ..+     +.... +....+++ +.+.+
T Consensus       105 ~~pk~VLIiGg--G~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~-Da~~~l~~-~~~~y  180 (312)
T d2b2ca1         105 PDPKRVLIIGG--GDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLKN-HKNEF  180 (312)
T ss_dssp             SSCCEEEEESC--TTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHHH-CTTCE
T ss_pred             CCCCeEEEeCC--CchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEc-hHHHHHHh-CCCCC
Confidence            34578999995  446667788887765 8999999988888888333221 111     11112 44555654 44589


Q ss_pred             cEEE-eCCCh----------hhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIYF-ENVGG----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+|+ |....          +.+..+.++|+++|.++.-.
T Consensus       181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            9887 43221          24778889999999988764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.011  Score=40.89  Aligned_cols=86  Identities=14%  Similarity=0.083  Sum_probs=55.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-----eeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE-----AFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~-----v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +|+|+|+ |.+|.+....+...|.+|..+++++++.+... ..+...     .+....    .+.+.     .+|+++-+
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~-----~~D~iii~   70 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTAND----PDFLA-----TSDLLLVT   70 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESC----HHHHH-----TCSEEEEC
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-cccCCccccccccccch----hhhhc-----ccceEEEe
Confidence            5899998 99999999999999999999998876443322 222211     111221    12222     48999999


Q ss_pred             CChhhHHhHHHhh----hcCCEEEEE
Q 024411          157 VGGKLLDAVLPNM----KIRGRIAAC  178 (268)
Q Consensus       157 ~g~~~~~~~~~~l----~~~G~~v~~  178 (268)
                      +-........+.+    .++..++.+
T Consensus        71 vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          71 LKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             SCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ecccchHHHHHhhccccCcccEEeec
Confidence            8875555444444    445556554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.053  Score=41.69  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc-----CC--C---eeeecCChhhHHHHHHHHC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF-----GF--D---EAFNYKEEADLNAALKRYF  146 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~-----g~--~---~v~~~~~~~~~~~~~~~~~  146 (268)
                      ...++|||+|+  |.|..+-.++++... +|.++...++-.+.+++.+     +.  +   +++..    +....+++ +
T Consensus        76 ~~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~----Da~~~l~~-~  148 (312)
T d1uira_          76 PEPKRVLIVGG--GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID----DARAYLER-T  148 (312)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES----CHHHHHHH-C
T ss_pred             CCcceEEEeCC--CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc----hHHHHhhh-c
Confidence            34578999995  446667777777654 9999999998888877433     11  1   12221    44445554 3


Q ss_pred             CCCccEEE-eCC---Ch----------hhHHhHHHhhhcCCEEEEE
Q 024411          147 PEGIDIYF-ENV---GG----------KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       147 ~~~~d~v~-d~~---g~----------~~~~~~~~~l~~~G~~v~~  178 (268)
                      ++.+|+|+ |..   +.          +.++.+.++|+++|.++.-
T Consensus       149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            45899886 542   21          2367888999999988764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.72  E-value=0.034  Score=35.97  Aligned_cols=38  Identities=18%  Similarity=0.047  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++..++|+|.|| |.+|.-+++.++.+|.+|+++.+++
T Consensus        18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            3455689999998 9999999999999999999999763

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.014  Score=45.39  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeee--ecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAGSKDKVDLLKNKFGFDEAF--NYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|-+|..+++.+...| .+|+++++...+...+.+.... ..+  |.+..+++.+.+.+    ++|.|+.+++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~-~~i~~Di~~~~~~~~~~~~----~~d~Vih~a~   76 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHF-HFVEGDISIHSEWIEYHVK----KCDVVLPLVA   76 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTE-EEEECCTTTCSHHHHHHHH----HCSEEEECBC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCe-EEEECccCChHHHHHHHHh----CCCccccccc
Confidence            58999999999999998887777 5999998765544433211111 122  22221133332322    4899999876

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.62  E-value=0.049  Score=42.63  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++-+|||+||+|-+|..++..+...|.+|+++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            46679999999999999999999999999999754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.59  E-value=0.054  Score=35.32  Aligned_cols=38  Identities=13%  Similarity=-0.021  Sum_probs=32.9

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .-.++++++|.|| |.+|+-+++.+..+|.+|+++.+++
T Consensus        26 ~~~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          26 VDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCTTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hccCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            3456789999998 9999999999999999999998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.57  E-value=0.016  Score=44.20  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=31.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ..+|||+||+|-+|..++..+...|.+|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            35699999999999999999999999999998754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.55  E-value=0.058  Score=38.29  Aligned_cols=89  Identities=21%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      -.|.++.|+|. |.+|..++++++.+|++|+..++...... .. ..+...+   .   ++.+-+++     .|++.-++
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~-~~-~~~~~~~---~---~l~~ll~~-----sD~i~~~~  112 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGV-ER-ALGLQRV---S---TLQDLLFH-----SDCVTLHC  112 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTH-HH-HHTCEEC---S---SHHHHHHH-----CSEEEECC
T ss_pred             eeCceEEEecc-ccccccceeeeeccccceeeccCcccccc-hh-hhccccc---c---chhhcccc-----CCEEEEee
Confidence            35789999997 99999999999999999999986543222 11 2333211   1   44444544     68887655


Q ss_pred             Ch-h-h----HHhHHHhhhcCCEEEEEcc
Q 024411          158 GG-K-L----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       158 g~-~-~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      .. + +    -...+..++++..+|.++-
T Consensus       113 plt~~T~~li~~~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             cccccchhhhhHHHHhccCCCCeEEecCC
Confidence            42 2 1    1356778888888888755

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.52  E-value=0.037  Score=35.71  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=31.0

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++++|.|| |.+|.-+++.+..+|.+|+++.+++
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence            478999998 9999999999999999999999764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.14  Score=35.29  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             hhccchHHHHHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhh
Q 024411           58 GILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD  137 (268)
Q Consensus        58 a~l~~~~~~a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  137 (268)
                      +.+||.....+..|.+..---.|+++.|.|.+.-+|.-+..++...|+.|+.........                    
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l--------------------   76 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL--------------------   76 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH--------------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccH--------------------
Confidence            345656555666665543345789999999999999999999999999999887432221                    


Q ss_pred             HHHHHHHHCCCCccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          138 LNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       138 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       .+..+     ..|+++-++|.+.+- --+.++++-.++.+|.
T Consensus        77 -~~~~~-----~aDivi~a~G~~~~i-~~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          77 -DEEVN-----KGDILVVATGQPEMV-KGEWIKPGAIVIDCGI  112 (170)
T ss_dssp             -HHHHT-----TCSEEEECCCCTTCB-CGGGSCTTCEEEECCC
T ss_pred             -HHHHh-----hccchhhcccccccc-ccccccCCCeEeccCc
Confidence             11121     277888888874432 2346777777777765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.035  Score=36.23  Aligned_cols=33  Identities=18%  Similarity=0.054  Sum_probs=29.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      .++++|.|| |.+|+-.++.++.+|.+|.++.++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            367999998 999999999999999999999854

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.059  Score=38.23  Aligned_cols=40  Identities=25%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      ++|.|+|+ |.+|...++++...|.+|++.+++++..+.++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence            57999998 99999999999999999999999988666554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.34  E-value=0.32  Score=33.77  Aligned_cols=91  Identities=10%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHHHHhcCCCe-eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGS-AGSKDKVDLLKNKFGFDE-AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~-~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      ++.|+|+ |.+|..-++.++.. +++++++ ++++++.+.+.++++... .-.++   ++.+.+.+   ..+|+|+-++.
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~---~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG---SYESLLED---PEIDALYVPLP   75 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES---SHHHHHHC---TTCCEEEECCC
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecC---cHHHhhhc---cccceeeeccc
Confidence            5788997 89998877777766 5688866 456666555554666532 11122   34433432   26999999888


Q ss_pred             h-hhHHhHHHhhhcCCEEEEEcc
Q 024411          159 G-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . ..+..+..++..+-. |.+..
T Consensus        76 ~~~h~~~~~~~l~~g~~-v~~EK   97 (184)
T d1ydwa1          76 TSLHVEWAIKAAEKGKH-ILLEK   97 (184)
T ss_dssp             GGGHHHHHHHHHTTTCE-EEECS
T ss_pred             chhhcchhhhhhhccce-eeccc
Confidence            7 777888888886544 55543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.31  E-value=0.29  Score=30.07  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=39.2

Q ss_pred             CCCCCcEEEEecCcchHHHHH-HHHHHHcCCEEEEEeCCH-HHHHHHHHhcCCC
Q 024411           76 SPKHGECVFISAASGAVGQLV-GQFAKLLGCYVVGSAGSK-DKVDLLKNKFGFD  127 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~-i~l~~~~g~~V~~~~~~~-~~~~~~~~~~g~~  127 (268)
                      .+...+++.++|- |++|+.+ +++++..|++|...+... ...+.+. +.|..
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~-~~Gi~   55 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA-QAGAK   55 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH-HTTCE
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH-HCCCe
Confidence            3566789999997 8889776 899999999999999754 3455566 67775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.077  Score=40.13  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC----C---C--eeeecCChhhHHHHHHHHCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFG----F---D--EAFNYKEEADLNAALKRYFP  147 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g----~---~--~v~~~~~~~~~~~~~~~~~~  147 (268)
                      ...++|||+|+  |-|..+-.++++.+. +|.++.-.++-.+.+++.+.    .   .  +++..    +....+++ +.
T Consensus        77 ~~pk~vLiiGg--G~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~----Da~~~l~~-~~  149 (285)
T d2o07a1          77 PNPRKVLIIGG--GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG----DGFEFMKQ-NQ  149 (285)
T ss_dssp             SSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES----CHHHHHHT-CS
T ss_pred             cCcCeEEEeCC--CchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc----cHHHHHhc-CC
Confidence            44578999995  446667777777655 99999989888888873331    0   1  12211    33445544 34


Q ss_pred             CCccEEE-eCCCh----------hhHHhHHHhhhcCCEEEEEc
Q 024411          148 EGIDIYF-ENVGG----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       148 ~~~d~v~-d~~g~----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      +.+|+|+ |....          +.++.+.+.|+++|.++.-.
T Consensus       150 ~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         150 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            4899876 54421          24778889999999987654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.19  E-value=0.018  Score=43.52  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      .++|||+||+|-+|..++..+...|.+|++++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            357999999999999999999999999999987543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.11  E-value=0.079  Score=37.38  Aligned_cols=89  Identities=15%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.++.|.|. |.+|...+++++.+|.+|+..++......... ..+...   ..   ++.+.++     ..|++.-+..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~~~---~~---~l~~~l~-----~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELNLTW---HA---TREDMYP-----VCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHTCEE---CS---SHHHHGG-----GCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccc-cccccc---cC---CHHHHHH-----hccchhhccc
Confidence            5789999997 99999999999999999999997544333333 333321   11   3333333     3788876554


Q ss_pred             h-h-----hHHhHHHhhhcCCEEEEEcc
Q 024411          159 G-K-----LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~-----~~~~~~~~l~~~G~~v~~g~  180 (268)
                      - +     .-...+..|+++..+|.++.
T Consensus       110 lt~~T~~li~~~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         110 LHPETEHMINDETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             ccccchhhhHHHHHHhCCCCCEEEecCc
Confidence            2 2     12467778888888877755

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.02  E-value=0.058  Score=35.06  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ++++++++|.|| |.+|.-++..++..|.+|+.+.+++
T Consensus        27 ~~~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hhcCCeEEEECc-chhHHHHHHHhhcccceEEEEeecc
Confidence            567899999998 9999999999999999999999764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.99  E-value=0.26  Score=33.33  Aligned_cols=89  Identities=19%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC---YVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~---~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~  154 (268)
                      |-+|.|.||+|-+|.-+++++..+..   ++...+++ +...... ......  ..+..+. +         ....|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~-~~~~~~~~~~~~~~~-~---------~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSL-KFKDQDITIEETTET-A---------FEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEE-EETTEEEEEEECCTT-T---------TTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccccc-cccCCcccccccchh-h---------hhhhhhhh
Confidence            45799999999999999999988853   55555532 2111100 011111  1111111 1         12588999


Q ss_pred             eCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          155 ENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       155 d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      -+.+. .......+....+.+++..+.
T Consensus        69 ~~~~~~~s~~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSSTSAKYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             hccCccchhhHHhhhccccceehhcCh
Confidence            99887 455555666677778877754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.055  Score=35.25  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++++|+|| |.+|+-+++.+..+|.+|.++.+++
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            478999998 9999999999999999999999753

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.90  E-value=0.14  Score=36.12  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=59.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCee-eecCChhhHHHHHHHHC-CCCcc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEA-FNYKEEADLNAALKRYF-PEGID  151 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~~~~~~-~~~~d  151 (268)
                      +.++ +||-+|+  |.|..+..+++ .|++|++++.++...+.+++   +.+.+.+ +...+       +.+.. .+.||
T Consensus        29 ~~~g-rvLDiGc--G~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d-------~~~~~~~~~fD   97 (198)
T d2i6ga1          29 VAPG-RTLDLGC--GNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVD-------LNTLTFDGEYD   97 (198)
T ss_dssp             SCSC-EEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC-------TTTCCCCCCEE
T ss_pred             CCCC-cEEEECC--CCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhhee-------ccccccccccc
Confidence            4454 7999996  46887777775 58999999999988776652   2344321 11111       01111 23799


Q ss_pred             EEEeCCC-----h----hhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFENVG-----G----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+...-     .    ..+..+.+.|+|+|.++....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9886321     1    256778888999999887644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.87  E-value=0.042  Score=35.85  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=32.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      +..++++|.|| |-+|+-+++.++.+|.+|.++.+++.
T Consensus        23 ~~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            34578999998 99999999999999999999997643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.84  E-value=0.062  Score=34.76  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=31.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ..++++|+|| |.+|+-.++.+..+|.+|.++.+++
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            3478999998 9999999999999999999999663

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.77  E-value=0.24  Score=34.44  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=56.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeCC--HHHHHHHHHhcCCCeeeecCChh-----------hHHHHHHHHCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAGS--KDKVDLLKNKFGFDEAFNYKEEA-----------DLNAALKRYFP  147 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~~--~~~~~~~~~~~g~~~v~~~~~~~-----------~~~~~~~~~~~  147 (268)
                      +|.|.|- |-+|...++.+.... .+++++...  ......+. ..+.......+...           .+.....    
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~----   76 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH-RRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK----   76 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH-HTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH----
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc-ccCcceeccCccceeccccceecCCchhhhhh----
Confidence            5789995 999999999998764 588877532  22333333 33332221111100           1111111    


Q ss_pred             CCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          148 EGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       148 ~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       ++|+|+||+|. ...+.+..+++.+-+++..+.
T Consensus        77 -~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          77 -TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             -HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             -cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence             48999999997 666777777877767777655

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.74  E-value=0.028  Score=39.73  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=30.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD  115 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~  115 (268)
                      +++|+|+|| |..|+.++..+..+|+ +|+++.+++.
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            478999998 9999999999999998 5988887654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.056  Score=34.82  Aligned_cols=34  Identities=24%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++++|.|+ |.+|+-+++.++.+|.+|.++.+++
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            468999998 9999999999999999999999764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.69  E-value=0.028  Score=41.49  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHC-CCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYF-PEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~-~~~~d~  152 (268)
                      .++.+||=.|+ | .|..+..+++ .|.+|++++.|++.++.+++..   +.. ..+..+        +.+.. .+.||+
T Consensus        36 ~~~~~vLDiGC-G-~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d--------~~~~~~~~~fD~  104 (246)
T d1y8ca_          36 LVFDDYLDLAC-G-TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD--------ISNLNINRKFDL  104 (246)
T ss_dssp             CCTTEEEEETC-T-TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC--------GGGCCCSCCEEE
T ss_pred             CCCCeEEEEeC-c-CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeeccc--------hhhhcccccccc
Confidence            34578999987 3 4666666665 5789999999999888876332   332 222221        11122 347999


Q ss_pred             EEeCCCh-----------hhHHhHHHhhhcCCEEEE
Q 024411          153 YFENVGG-----------KLLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       153 v~d~~g~-----------~~~~~~~~~l~~~G~~v~  177 (268)
                      |+...+.           ..+..+.++|+|+|.++.
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9854321           146788889999998774

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.11  Score=34.92  Aligned_cols=82  Identities=22%  Similarity=0.156  Sum_probs=45.5

Q ss_pred             EEEEecCcchHHHHHHHH-HHHcC---CEEEEEeCCHHHHHHHHHhcCC-CeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           82 CVFISAASGAVGQLVGQF-AKLLG---CYVVGSAGSKDKVDLLKNKFGF-DEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l-~~~~g---~~V~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +|.|.||||-+|+-.+++ +.+..   .+++...++........ ..+. ..+.+..+   .. .+.     ++|++|-|
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~~~~~~~~~---~~-~~~-----~~DivF~a   72 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTTGTLQDAFD---LE-ALK-----ALDIIVTC   72 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCCCBCEETTC---HH-HHH-----TCSEEEEC
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCceeeecccc---hh-hhh-----cCcEEEEe
Confidence            688999999999999985 44332   37776665432111111 1111 11222211   11 122     49999999


Q ss_pred             CChhhHHhHHHhhhcCC
Q 024411          157 VGGKLLDAVLPNMKIRG  173 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G  173 (268)
                      ++...-......+...|
T Consensus        73 ~~~~~s~~~~~~~~~~g   89 (146)
T d1t4ba1          73 QGGDYTNEIYPKLRESG   89 (146)
T ss_dssp             SCHHHHHHHHHHHHHTT
T ss_pred             cCchHHHHhhHHHHhcC
Confidence            99865555555554444

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.019  Score=41.83  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC--eeeecCChhhHHHHHHHHC--CCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYF--PEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~--~~~~d  151 (268)
                      ...++.+||=+|+  |.|..+..+++..+.+|++++.++...+.+++.+...  ..+.+... +    +.+..  .+.+|
T Consensus        57 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~-d----~~~~~~~~~~fD  129 (222)
T d2ex4a1          57 NKTGTSCALDCGA--GIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC-G----LQDFTPEPDSYD  129 (222)
T ss_dssp             -CCCCSEEEEETC--TTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC-C----GGGCCCCSSCEE
T ss_pred             CCCCCCEEEEecc--CCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccc-c----cccccccccccc
Confidence            4567789999995  5688888888777779999999999998887433221  01111111 1    11111  23799


Q ss_pred             EEEeCC-----Ch----hhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFENV-----GG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +|+...     ..    ..+..+.+.|+|+|.++....
T Consensus       130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            987632     22    256788889999999887644

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.60  E-value=0.046  Score=42.38  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      +-+++||+||+|-+|..++..+...|.+|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            3468999999999999999999999999999874

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.58  E-value=0.44  Score=32.43  Aligned_cols=135  Identities=10%  Similarity=0.036  Sum_probs=77.8

Q ss_pred             EEEEecCcchHHHH-HHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCCh
Q 024411           82 CVFISAASGAVGQL-VGQFAKLL-GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG  159 (268)
Q Consensus        82 ~vlI~ga~g~~G~~-~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  159 (268)
                      +|.|+|+ |.+|.. ....++.. +.++++.++++++.+.+.++++...+++.-+  +   .+ +   ..+|+|+-|+..
T Consensus         3 rvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~---ll-~---~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYR--D---VL-Q---YGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT--G---GG-G---GCCSEEEECSCG
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHH--H---hc-c---cccceecccccc
Confidence            5789997 888854 45555555 4587777788887777765777754442211  1   11 1   258999988887


Q ss_pred             -hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHH-hcceeeeeEEecccccchHHHHHHHHHHHHcCCcee
Q 024411          160 -KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLV-SKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVY  235 (268)
Q Consensus       160 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  235 (268)
                       .....+..++..+-. |.+..+-..+.   .......... .++..+. . .  + .++...+.++.+.+..|++-.
T Consensus        73 ~~H~~~~~~al~~gk~-V~~EKP~~~~~---~e~~~l~~~a~~~~~~~~-v-g--~-~r~~~~~~~~~~~~~~G~ig~  141 (167)
T d1xeaa1          73 DVHSTLAAFFLHLGIP-TFVDKPLAASA---QECENLYELAEKHHQPLY-V-G--F-NGFDAMVQDWLQVAAAGKLPT  141 (167)
T ss_dssp             GGHHHHHHHHHHTTCC-EEEESCSCSSH---HHHHHHHHHHHHTTCCEE-E-E--C-GTHHHHHHHHHHHHHHTCCCH
T ss_pred             cccccccccccccccc-cccCCCCcCCH---HHHHHHHHHHHHcCCEEE-E-E--e-CcCCHHHHHHHHHhhcCCCCc
Confidence             777888888887654 45543221100   0111122222 2222221 1 1  1 133556778888888888753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.069  Score=40.58  Aligned_cols=94  Identities=13%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------C---eeeecCChhhHHHHHHHHCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGF------D---EAFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~------~---~v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ..++|||+|+  |-|..+-.++++.+. +|.++.-.++-.+.+++.+..      +   +++. .   +..+.+++ +.+
T Consensus        89 ~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-~---Da~~~l~~-~~~  161 (295)
T d1inla_          89 NPKKVLIIGG--GDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-A---NGAEYVRK-FKN  161 (295)
T ss_dssp             SCCEEEEEEC--TTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-S---CHHHHGGG-CSS
T ss_pred             CCceEEEecC--CchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-h---hHHHHHhc-CCC
Confidence            4578999996  335666677777654 899999998888887732311      1   1221 1   33444543 344


Q ss_pred             CccEEE-eCCCh-----------hhHHhHHHhhhcCCEEEEEc
Q 024411          149 GIDIYF-ENVGG-----------KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       149 ~~d~v~-d~~g~-----------~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+|+|+ |+...           +.+..+.+.|+++|.++.-.
T Consensus       162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            899886 54321           24778899999999887754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.057  Score=37.83  Aligned_cols=37  Identities=16%  Similarity=0.070  Sum_probs=33.2

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      ....++|+|+|| |+.|+.++..+...|.+|++..+.+
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            456789999998 9999999999999999999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.47  E-value=0.046  Score=40.48  Aligned_cols=33  Identities=12%  Similarity=0.031  Sum_probs=29.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      .++|+|+|| |..|++++..+...|.+|+++.++
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence            578999998 999999999999999999999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.41  E-value=0.35  Score=33.36  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDE--AFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+|-++|. |.+|..++.-+...|.+|++.++++++.+.+. +.++..  .....   ... .+.+.. ...|.++-++.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~~~~~~a~---~~~-~~~~~~-~~~~~ii~~~~   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-ANEAKGTKVLGAH---SLE-EMVSKL-KKPRRIILLVK   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-HTTTTTSSCEECS---SHH-HHHHHB-CSSCEEEECSC
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-Hhccccccccchh---hhh-hhhhhh-cccceEEEecC
Confidence            46889997 99999988888889999999999999988887 444321  11111   111 222221 13566665554


Q ss_pred             h-hh----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.    .......++++..++..+.
T Consensus        76 ~~~~v~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          76 AGQAVDNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             TTHHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred             chHHHHHHHHHHHhccccCcEEEecCc
Confidence            3 32    2334444555556666544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.26  E-value=0.49  Score=31.47  Aligned_cols=71  Identities=20%  Similarity=0.089  Sum_probs=45.1

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCeee----ecCChhhHHHHHHHHCCCCccEEEe
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDEAF----NYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~v~----~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      .|.|+||+|.+|..++.++...+.  ++...+..+.+.+.+. -.......    ..... +..+.++     +.|+++-
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~D-l~~~~~~~~~~~~~~~~-~~~~~~~-----~aDivVi   74 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAAD-LSHIETRATVKGYLGPE-QLPDCLK-----GCDVVVI   74 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHH-HTTSSSSCEEEEEESGG-GHHHHHT-----TCSEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHH-HhhhhhhcCCCeEEcCC-ChHHHhC-----CCCEEEE
Confidence            588999889999999999998886  7777887655433322 22222111    11122 4444443     4899998


Q ss_pred             CCCh
Q 024411          156 NVGG  159 (268)
Q Consensus       156 ~~g~  159 (268)
                      +.|.
T Consensus        75 tag~   78 (144)
T d1mlda1          75 PAGV   78 (144)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            8873

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.23  E-value=0.078  Score=34.65  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=31.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      +..++++|.|+ |-+|+-+++.++.+|.+|.++.++
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEee
Confidence            34588999998 999999999999999999999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.069  Score=34.88  Aligned_cols=34  Identities=15%  Similarity=0.044  Sum_probs=30.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++++|.|| |.+|+-+++.++.+|.+|+++.+++
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            368999998 9999999999999999999999763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.22  E-value=0.44  Score=28.79  Aligned_cols=47  Identities=21%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             EEEEecCcchHHHH-HHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCeee
Q 024411           82 CVFISAASGAVGQL-VGQFAKLLGCYVVGSAGSKD-KVDLLKNKFGFDEAF  130 (268)
Q Consensus        82 ~vlI~ga~g~~G~~-~i~l~~~~g~~V~~~~~~~~-~~~~~~~~~g~~~v~  130 (268)
                      +|-++|- ||+|+. ++++++..|+.|...+..+. ..+.++ +.|.....
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~i~~   51 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIPIFV   51 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCCEES
T ss_pred             EEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCeEEe
Confidence            5777887 888975 46888999999999997763 556676 88876433

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.16  E-value=0.62  Score=32.18  Aligned_cols=81  Identities=17%  Similarity=0.063  Sum_probs=52.5

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCC---------eeeecCChhhHHHHHHHHCCCCc
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD--KVDLLKNKFGFD---------EAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~--~~~~~~~~~g~~---------~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .|.|+|+ |.+|.+.+..+..-|.+|+...+..+  ..+... +-...         ..+... . ++.+.+.     ..
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~-~~~~~~~~~~~~~~~~i~~~-~-~~~~~~~-----~a   72 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-AGREHPRLGVKLNGVEIFWP-E-QLEKCLE-----NA   72 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-TTCCBTTTTBCCCSEEEECG-G-GHHHHHT-----TC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh-hhhhhhhhcchhcccccccc-c-cHHHHHh-----cc
Confidence            4789997 99999999999888999999986433  344443 21110         011111 1 4444443     48


Q ss_pred             cEEEeCCChhhHHhHHHhhhc
Q 024411          151 DIYFENVGGKLLDAVLPNMKI  171 (268)
Q Consensus       151 d~v~d~~g~~~~~~~~~~l~~  171 (268)
                      |+++-++....++..++.+.+
T Consensus        73 d~Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          73 EVVLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             SEEEECSCGGGHHHHHHHHTT
T ss_pred             chhhcccchhhhHHHHHhhcc
Confidence            999999998777766666555

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.12  E-value=0.16  Score=36.48  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCh--hhHHHHHHHH
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEE--ADLNAALKRY  145 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~--~~~~~~~~~~  145 (268)
                      ...+..+.++||=+|  .+.|..++.+|+.+  +.+|+.++.+++..+.+++   ..|....+.....  .+....+...
T Consensus        50 ~lv~~~kpk~ILEiG--t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~  127 (214)
T d2cl5a1          50 AVIREYSPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK  127 (214)
T ss_dssp             HHHHHHCCSEEEEEC--CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH
T ss_pred             HHHHhhCCCEEEEEc--cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc
Confidence            334445667899998  45677888888875  5699999999887776652   3465432222221  0222233333


Q ss_pred             CC-CCccEEE-eCCChh-----hHHhHHHhhhcCCEEEE
Q 024411          146 FP-EGIDIYF-ENVGGK-----LLDAVLPNMKIRGRIAA  177 (268)
Q Consensus       146 ~~-~~~d~v~-d~~g~~-----~~~~~~~~l~~~G~~v~  177 (268)
                      .. +.+|+++ |+.-..     .+...+++|+|||.++.
T Consensus       128 ~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         128 YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            22 3799776 533221     24456678999997654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.08  E-value=0.12  Score=34.15  Aligned_cols=38  Identities=13%  Similarity=-0.000  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .+.++++++|.|| |.+|.-++..+...|.+|.++.+++
T Consensus        31 ~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hhccCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence            4567899999998 9999999999999999999999764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.053  Score=42.03  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             EE-EEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           82 CV-FISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        82 ~v-lI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .| ||+||+|-+|..++..+...|++|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46 9999999999999999999999999998743

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.02  E-value=0.087  Score=33.76  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .++++|.|| |.+|.-+++.+..+|.+|.++.+.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            378999998 9999999999999999999998663

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=93.01  E-value=0.17  Score=38.81  Aligned_cols=98  Identities=16%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe--eeecCChhhHHHHHHHHCCCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK---FGFDE--AFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      .+|++||=.++ | .|..++++++ .+.+|+.++.++...+.+++.   .|.+.  .+..+.. ++...+.. .++.||+
T Consensus       144 ~~g~rVLDl~~-g-tG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~-~~~~~~~~-~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFS-Y-AGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF-DLLRRLEK-EGERFDL  218 (318)
T ss_dssp             CCEEEEEEETC-T-TTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHH-HHHHHHHH-TTCCEEE
T ss_pred             hCCCeeeccCC-C-CcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHH-HHhhhhHh-hhcCCCE
Confidence            46889988775 2 3445566664 456999999999988887643   34432  2322222 33333332 1237998


Q ss_pred             EE-eCC--C--h-----------hhHHhHHHhhhcCCEEEEEcc
Q 024411          153 YF-ENV--G--G-----------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       153 v~-d~~--g--~-----------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |+ |.-  +  .           ..+..++++|+|||.++....
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            86 421  1  1           134577888999999888754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.11  Score=39.73  Aligned_cols=97  Identities=21%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             HhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH--HhcCCC---eeeecCChhhHHHHHH
Q 024411           70 GFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLK--NKFGFD---EAFNYKEEADLNAALK  143 (268)
Q Consensus        70 ~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~--~~~g~~---~v~~~~~~~~~~~~~~  143 (268)
                      |+.+...+.++++||-+|+ | .|..++.+|+ .|+ +|++++.++......+  .+.+..   .+++.+.. ++     
T Consensus        26 ai~~~~~~~~~~~VLDiGc-G-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~-~l-----   96 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGC-G-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-EV-----   96 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TS-----
T ss_pred             HHHhccccCCcCEEEEECC-C-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH-Hh-----
Confidence            3444445678999999996 3 5666666665 476 8999998875432221  133332   23332221 11     


Q ss_pred             HHCC-CCccEEEe-CCC----hh----h-HHhHHHhhhcCCEEE
Q 024411          144 RYFP-EGIDIYFE-NVG----GK----L-LDAVLPNMKIRGRIA  176 (268)
Q Consensus       144 ~~~~-~~~d~v~d-~~g----~~----~-~~~~~~~l~~~G~~v  176 (268)
                       ..+ +.+|+|+. ..+    ++    . +....+.|+|+|+++
T Consensus        97 -~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          97 -HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             -CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             -cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence             012 37999874 222    11    2 223445799999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.96  E-value=0.054  Score=40.93  Aligned_cols=33  Identities=21%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      +++|+|+|| |.-|+.++..+...|.+|.++..+
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            478999998 999999999999999999999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.92  E-value=0.89  Score=31.14  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC-CEEEEEeC-C-HHHHHHHHHhcCCCeeeecCCh-hhHHH-------HHHHHCCCCc
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG-CYVVGSAG-S-KDKVDLLKNKFGFDEAFNYKEE-ADLNA-------ALKRYFPEGI  150 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g-~~V~~~~~-~-~~~~~~~~~~~g~~~v~~~~~~-~~~~~-------~~~~~~~~~~  150 (268)
                      +|.|.|- |-+|..+.+.+...+ .+++.+.. + ......+. .++.+......+. ..+..       .+.+.. .++
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~v   79 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMAL-KKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEA   79 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHH-HTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTC
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHH-hcCCceEecccccceeecccCcccCCChhHhh-cCC
Confidence            6889985 999999999887665 47766643 2 23444554 5554432211110 00000       000100 159


Q ss_pred             cEEEeCCCh-hhHHhHHHhhhcCCEEEEEccc
Q 024411          151 DIYFENVGG-KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       151 d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      |+|+||+|. .....+-.++..+-+.|..+..
T Consensus        80 DvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          80 DIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             CEEEEccCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            999999997 6777788888888888877553

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.89  Score=31.07  Aligned_cols=97  Identities=15%  Similarity=0.071  Sum_probs=54.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCC-eeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFD-EAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+.++.+||=.++  |.|...+.. ...|++|+.++.+++..+.+++   ..+.. .+...+.. .+.... ....+.||
T Consensus        38 ~~~~g~~vLDl~~--G~G~~~i~a-~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d-~~~~~~-~~~~~~fD  112 (171)
T d1ws6a1          38 RYPRRGRFLDPFA--GSGAVGLEA-ASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE-VFLPEA-KAQGERFT  112 (171)
T ss_dssp             HCTTCCEEEEETC--SSCHHHHHH-HHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH-HHHHHH-HHTTCCEE
T ss_pred             cccCCCeEEEecc--ccchhhhhh-hhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehh-cccccc-cccCCccc
Confidence            4677788877654  233344443 3468999999999988777653   34553 34433322 332222 22234799


Q ss_pred             EEE-eCC---Ch-hhHHhHH--HhhhcCCEEEE
Q 024411          152 IYF-ENV---GG-KLLDAVL--PNMKIRGRIAA  177 (268)
Q Consensus       152 ~v~-d~~---g~-~~~~~~~--~~l~~~G~~v~  177 (268)
                      +|+ |.-   +. ..+...+  ..++++|.++.
T Consensus       113 ~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             eeEEccccccCHHHHHHHHHHcCCcCCCeEEEE
Confidence            886 432   21 3333333  35778887654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.058  Score=36.47  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=30.3

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      -.++++||.|| |.+|..-+..+...|++|++++.
T Consensus        11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            36789999998 99999999999999999999963

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=92.69  E-value=0.081  Score=39.72  Aligned_cols=62  Identities=8%  Similarity=0.176  Sum_probs=38.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|||+||+|-+|..++..+...|. ++.++....       .    ...|..+.+.+.+.++..   ++|+|+.+++
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~-------~----~~~Dl~~~~~~~~~i~~~---~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSK-------E----FCGDFSNPKGVAETVRKL---RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCS-------S----SCCCTTCHHHHHHHHHHH---CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCc-------c----ccCcCCCHHHHHHHHHHc---CCCEEEEecc
Confidence            489999999999999988877774 455543311       1    112333321333334332   5899999886

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.075  Score=41.19  Aligned_cols=31  Identities=19%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSA  111 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~  111 (268)
                      ++|||+||+|-+|..++..+...|.+|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            6899999999999999999999999999985

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.51  E-value=0.18  Score=36.97  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      -.+.+|+|.|- |.+|..+++++...|++|+.++.+
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            47899999996 999999999999999999988743

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=92.43  E-value=0.066  Score=36.21  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=50.4

Q ss_pred             EEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChhhHH
Q 024411           84 FISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLD  163 (268)
Q Consensus        84 lI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  163 (268)
                      =++|+ |.+|..++..++..+..+.+..|+.++.+.+.++.+.. ..+..+.           -...|+||=|+....+.
T Consensus         3 gfIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~~~-----------~~~~DiVil~v~d~~i~   69 (153)
T d2i76a2           3 NFVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK-AATLEKH-----------PELNGVVFVIVPDRYIK   69 (153)
T ss_dssp             EEESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC-CCSSCCC-----------CC---CEEECSCTTTHH
T ss_pred             EEEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc-ccchhhh-----------hccCcEEEEeccchhhh
Confidence            36786 99999988877654434457889999998888444432 2222210           12478999999887777


Q ss_pred             hHHHhhhcCCE-EEEEc
Q 024411          164 AVLPNMKIRGR-IAACG  179 (268)
Q Consensus       164 ~~~~~l~~~G~-~v~~g  179 (268)
                      .....++..++ ++.+.
T Consensus        70 ~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          70 TVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             HHHTTTCCSSCCEEECC
T ss_pred             HHHhhhcccceeeeecc
Confidence            77777765444 44443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.29  Score=36.56  Aligned_cols=72  Identities=10%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             EEEecCcchHHHHHHHHHHHcCC-EEEEEe--CCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCC-CccEEEeCCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGC-YVVGSA--GSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVG  158 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g  158 (268)
                      |||+||+|-+|..++..+...|. +|++++  ....+..... +.......+..   ++.........- .++.++-+++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV-DLNIADYMDKE---DFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH-TSCCSEEEEHH---HHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhccc-ccchhhhccch---HHHHHHhhhhcccchhhhhhhcc
Confidence            89999999999999988888896 788875  2223333333 34333333222   333333332222 5777776553

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.23  Score=37.07  Aligned_cols=104  Identities=9%  Similarity=0.005  Sum_probs=61.2

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHhcCC----C-eeeecCCh--hhHHH
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL-------GCYVVGSAGSKDKVDLLKNKFGF----D-EAFNYKEE--ADLNA  140 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-------g~~V~~~~~~~~~~~~~~~~~g~----~-~v~~~~~~--~~~~~  140 (268)
                      ...++.-+||=+|+  |.|..+..+++.+       +.++++++.++...+.+++.+..    . ..++....  +++..
T Consensus        36 ~~~~~~~~VLDiGc--G~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (280)
T d1jqea_          36 GDTKSEIKILSIGG--GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQS  113 (280)
T ss_dssp             TTTCSEEEEEEETC--TTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHH
T ss_pred             ccCCCCCeEEEEcC--CCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcc
Confidence            33455557998886  3455555555432       23788999998888887743321    1 12222221  12322


Q ss_pred             HHHHHCCC-CccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          141 ALKRYFPE-GIDIYFENVG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       141 ~~~~~~~~-~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ........ .||+|+-...     .  ..+..+.+.|+|+|.++....
T Consensus       114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            33322233 8999976332     2  468899999999998877643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=92.27  E-value=0.038  Score=41.81  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCCeee-ecCChhhHHHHHHHHCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL--GCYVVGSAGSKDKVDLLKNKF---GFDEAF-NYKEEADLNAALKRYFPE  148 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~--g~~V~~~~~~~~~~~~~~~~~---g~~~v~-~~~~~~~~~~~~~~~~~~  148 (268)
                      ..+.+..+||=.|+  |.|..+..+++..  +.+|++++.++...+.+++..   +....+ ..+.. .+      ..++
T Consensus        23 ~~~~~~~~ILDiGc--G~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~------~~~~   93 (281)
T d2gh1a1          23 WKITKPVHIVDYGC--GYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EI------ELND   93 (281)
T ss_dssp             SCCCSCCEEEEETC--TTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TC------CCSS
T ss_pred             hccCCcCEEEEecC--cCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccc-cc------cccC
Confidence            35677889999986  3588888888865  469999999999888877432   222111 11111 11      0123


Q ss_pred             CccEEEeCCC-----h--hhHHhHHHhhhcCCEEEEEc
Q 024411          149 GIDIYFENVG-----G--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       149 ~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      .+|+|+....     .  ..+..+.+.|+|+|.++...
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            7999975432     2  45788999999999988764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=92.22  E-value=0.091  Score=38.08  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=58.7

Q ss_pred             hcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCChhhHHHHHHHHCCCCccE
Q 024411           74 VCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD-EAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        74 ~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      ..+..++.+||=+|+  |.|..+..++ ..|.+|++++.+++..+.+++..... ..+..+.. ++      ...+.||+
T Consensus        15 ~~~~~~~~~VLDiGc--G~G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~-~~------~~~~~fD~   84 (225)
T d2p7ia1          15 FTPFFRPGNLLELGS--FKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLKDGITYIHSRFE-DA------QLPRRYDN   84 (225)
T ss_dssp             HGGGCCSSCEEEESC--TTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGG-GC------CCSSCEEE
T ss_pred             hhhhCCCCcEEEEeC--CCcHHHHHHH-HcCCeEEEEeCcHHHhhhhhccccccccccccccc-cc------cccccccc
Confidence            334455678999986  4476666655 45789999999999999998444322 22222211 11      01237998


Q ss_pred             EEeCC-----Ch--hhHHhHH-HhhhcCCEEEEE
Q 024411          153 YFENV-----GG--KLLDAVL-PNMKIRGRIAAC  178 (268)
Q Consensus       153 v~d~~-----g~--~~~~~~~-~~l~~~G~~v~~  178 (268)
                      |+-.-     ..  ..+.... ++|+|+|.++..
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            87422     12  2345555 578999988765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.13  E-value=0.096  Score=38.16  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      ....++|+|+|| |..|+.++..+..+|.+|.++..+++
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            356789999998 99999999999999999999986553

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.12  E-value=0.029  Score=41.70  Aligned_cols=96  Identities=9%  Similarity=0.050  Sum_probs=59.2

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHCCC-Ccc
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYFPE-GID  151 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~~~-~~d  151 (268)
                      ++++++||=.|+ | .|..+..+++....+|++++.|++..+.+++..   +.. .+.-.... ...   .....+ .||
T Consensus        22 ~~~~~~VLDlGC-G-~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D-~~~---~~~~~~~~fD   95 (252)
T d1ri5a_          22 TKRGDSVLDLGC-G-KGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD-SYG---RHMDLGKEFD   95 (252)
T ss_dssp             CCTTCEEEEETC-T-TTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESC-TTT---SCCCCSSCEE
T ss_pred             CCCcCEEEEecc-c-CcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcc-hhh---hcccccccce
Confidence            578899999997 3 366667777665558999999999888887332   222 22111110 000   001123 799


Q ss_pred             EEEeCCCh-----------hhHHhHHHhhhcCCEEEEE
Q 024411          152 IYFENVGG-----------KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       152 ~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  178 (268)
                      +|+....-           ..+..+.+.|+|+|.++..
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            98753321           1356677889999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.95  E-value=0.11  Score=39.65  Aligned_cols=37  Identities=22%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ...+.++|+|+|| |..|+.++..+...|.+|.++..+
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3455678999998 999999999999999999999865

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.92  E-value=1.2  Score=30.49  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=77.1

Q ss_pred             EEEEecCcchHHHH-HHHHHHHcC--CEEEEE-eCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQL-VGQFAKLLG--CYVVGS-AGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~-~i~l~~~~g--~~V~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      ++.|+|+ |.+|.. -+...+..+  .+++++ ++++++.+.+.++++...++  .   ++.+.+..   ..+|.|+-|+
T Consensus         5 rigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~--~---~~~ell~~---~~id~v~I~t   75 (181)
T d1zh8a1           5 RLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF--D---SYEELLES---GLVDAVDLTL   75 (181)
T ss_dssp             EEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE--S---CHHHHHHS---SCCSEEEECC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee--e---eeeccccc---cccceeeccc
Confidence            6789996 889864 456666543  477765 45566666655477765443  2   34434432   3699999888


Q ss_pred             Ch-hhHHhHHHhhhcCCEEEEEcccccccCCCCccccchHHHHh-cceeeeeEEeccc-ccchHHHHHHHHHHHHcCCce
Q 024411          158 GG-KLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVS-KRLRMEGFIVLDH-YHLYPKFLEMIIPHIKEGKLV  234 (268)
Q Consensus       158 g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~  234 (268)
                      .. .+...+..++..+ +=|.+..+...+   .........+.. ++..+  ....++ ...+...+..+.+++.+|++-
T Consensus        76 p~~~h~~~~~~al~~g-k~V~~EKPl~~~---~~e~~~l~~~~~~~~~~~--~v~~~~R~~~~~~~~~~~~~~i~~G~ig  149 (181)
T d1zh8a1          76 PVELNLPFIEKALRKG-VHVICEKPISTD---VETGKKVVELSEKSEKTV--YIAENFRENSYQKEFEDFYQVVAEGKPN  149 (181)
T ss_dssp             CGGGHHHHHHHHHHTT-CEEEEESSSSSS---HHHHHHHHHHHHHCSSCE--EEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccccccccccccc-hhhhcCCCCcCC---HHHHHHHHHHHHHhCCeE--EEEeeccccccCHHHHHHHHHHHCCCCc
Confidence            87 6777777777775 445554422110   000111122221 22222  122222 223456688888999998774


Q ss_pred             e
Q 024411          235 Y  235 (268)
Q Consensus       235 ~  235 (268)
                      .
T Consensus       150 ~  150 (181)
T d1zh8a1         150 D  150 (181)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=91.82  E-value=0.031  Score=39.41  Aligned_cols=93  Identities=10%  Similarity=-0.008  Sum_probs=54.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH---HHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK---VDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      =+|.|.||+|-+|+-.++++..+-. ++..+.++...   .......+...........       .+....+.|++|-+
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAV-------KDADFSNVDAVFCC   78 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCG-------GGCCGGGCSEEEEC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhh-------hhhhhcccceeeec
Confidence            3689999999999999999998754 77666643321   1111101111000000000       00001258999999


Q ss_pred             CChhhHHhHHHhhhcCCEEEEEcc
Q 024411          157 VGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ............+...+.++....
T Consensus        79 lp~~~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          79 LPHGTTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             CSSSHHHHHHHTSCSSCEEEECSS
T ss_pred             cccchHHHHHHHHHhcCcccccch
Confidence            998666666677778887776543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.80  E-value=0.15  Score=37.17  Aligned_cols=36  Identities=17%  Similarity=0.083  Sum_probs=31.5

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++..++|+|+|| |..|++++..+...|.+|.++.+.
T Consensus         3 ~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           3 MHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence            345568999998 999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.75  E-value=0.13  Score=33.30  Aligned_cols=36  Identities=14%  Similarity=0.031  Sum_probs=31.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      +.+++++|.|| |.+|.-+++.+..+|.+|.++.+++
T Consensus        30 ~~~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            34578999998 9999999999999999999998763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=91.67  E-value=0.31  Score=35.85  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCCc
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      -.+.+..+||=+|+  |.|..+..+++.. +.++++.+. ++..+.+++   +.+....+..... ++    .+..++++
T Consensus        76 ~d~~~~~~VLDvGc--G~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~-D~----~~~~~~~~  147 (253)
T d1tw3a2          76 YDWTNVRHVLDVGG--GKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-DF----FEPLPRKA  147 (253)
T ss_dssp             SCCTTCSEEEEETC--TTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-CT----TSCCSSCE
T ss_pred             cCCccCCEEEEeCC--CCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccc-cc----hhhcccch
Confidence            35677789999984  6688999999887 568888885 444444432   2343221211111 21    11122368


Q ss_pred             cEEEeCC-----Ch----hhHHhHHHhhhcCCEEEEEcc
Q 024411          151 DIYFENV-----GG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       151 d~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |+|+-..     ..    ..+..+.+.|+|+|+++....
T Consensus       148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            9887422     22    246788999999999988754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.45  E-value=0.44  Score=34.24  Aligned_cols=91  Identities=12%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             cEEEEecCcchHHH-HHHHHHHHc-CCEEEEE-eCCHHHHHHHHHhcCCC--eeeecCChhhHHHHHHHHCCC-CccEEE
Q 024411           81 ECVFISAASGAVGQ-LVGQFAKLL-GCYVVGS-AGSKDKVDLLKNKFGFD--EAFNYKEEADLNAALKRYFPE-GIDIYF  154 (268)
Q Consensus        81 ~~vlI~ga~g~~G~-~~i~l~~~~-g~~V~~~-~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~-~~d~v~  154 (268)
                      =+|.|+|+ |.+|. ..+...+.. +.+++++ ++++++.+.+.++++..  .+..++   ++.    ++... .+|.|+
T Consensus        34 iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~---d~~----ell~~~~iD~V~  105 (221)
T d1h6da1          34 FGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS---NFD----KIAKDPKIDAVY  105 (221)
T ss_dssp             EEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS---SGG----GGGGCTTCCEEE
T ss_pred             EEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccC---chh----hhcccccceeee
Confidence            47889997 88886 344444443 6788866 45667766666577764  232233   222    22223 799999


Q ss_pred             eCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          155 ENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       155 d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      -++.. .+...+..++..+ +-|.+..
T Consensus       106 I~tp~~~H~~~~~~al~~g-k~v~~EK  131 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAG-KHVMCEK  131 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEEECS
T ss_pred             eccchhhhhhHHHHhhhcc-hhhhcCC
Confidence            88887 6778888888765 4455543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.44  E-value=0.083  Score=39.73  Aligned_cols=32  Identities=31%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .|+|.|| |..|++++..++..|.+|.++.+.+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4899998 9999999999999999999998764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.28  E-value=0.74  Score=29.69  Aligned_cols=90  Identities=13%  Similarity=-0.011  Sum_probs=59.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCChh-
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGK-  160 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  160 (268)
                      +++|.|. |.+|..+++.++  +.+|++++.++++.+.++ ..|.. ++..+.  .-.+.+++..-..++.++-+.... 
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~-~~~~~-~i~Gd~--~~~~~L~~a~i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVL-RSGAN-FVHGDP--TRVSDLEKANVRGARAVIVNLESDS   74 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHH-HTTCE-EEESCT--TSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred             EEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHH-hcCcc-cccccc--CCHHHHHHhhhhcCcEEEEeccchh
Confidence            5889997 999998888765  446777888888888777 66654 443443  223456554444788888777652 


Q ss_pred             ---hHHhHHHhhhcCCEEEEE
Q 024411          161 ---LLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       161 ---~~~~~~~~l~~~G~~v~~  178 (268)
                         .+-...+.+.|..+++..
T Consensus        75 ~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          75 ETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHHHHHHHCSSSCEEEE
T ss_pred             hhHHHHHHHHHHCCCceEEEE
Confidence               234555667777766655

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.27  E-value=1.2  Score=31.04  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHCCCCc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+++++.++=.  +-|.|-.+-.+++.. +.+|++++++++..+.+++.+   +.. ..++.+-. ++...+.....+.+
T Consensus        20 ~~~~~~~~lD~--t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~-~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          20 KPEDEKIILDC--TVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR-EADFLLKTLGIEKV   96 (192)
T ss_dssp             CCCTTCEEEET--TCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG-GHHHHHHHTTCSCE
T ss_pred             CCCCCCEEEEe--cCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHh-hHHHHHHHcCCCCc
Confidence            56788866433  344454455555554 569999999999988887433   322 23333322 44444444433478


Q ss_pred             cEE-EeCCC-h--------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          151 DIY-FENVG-G--------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       151 d~v-~d~~g-~--------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      |-| +|.-- +              ..+..+.+.|+++|+++.+..
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            866 45311 1              246677788889999887765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.24  E-value=1.6  Score=30.77  Aligned_cols=94  Identities=15%  Similarity=0.073  Sum_probs=59.5

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCC-CCccEEE
Q 024411           80 GECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFP-EGIDIYF  154 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~-~~~d~v~  154 (268)
                      ...||=+|+  |.|..++.+|+.. ..++++++.+......+.+   +.+..++--...  +.. .+.+..+ +.+|.++
T Consensus        30 ~PlvLeIGc--G~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~--Da~-~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          30 NPIHIEVGT--GKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI--DAD-TLTDVFEPGEVKRVY  104 (204)
T ss_dssp             CCEEEEECC--TTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC--CGG-GHHHHCCTTSCCEEE
T ss_pred             CceEEEEEe--cCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhccc--chh-hhhcccCchhhhccc
Confidence            456777785  5688899999876 5699999999887666532   456654322222  111 1223333 3677665


Q ss_pred             eCC-C--------------hhhHHhHHHhhhcCCEEEEE
Q 024411          155 ENV-G--------------GKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       155 d~~-g--------------~~~~~~~~~~l~~~G~~v~~  178 (268)
                      -.. .              ...+..+.+.|+|||.+...
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            322 1              13567888999999998775

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.25  Score=36.25  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=27.0

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC-EEEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC-YVVGSA  111 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~  111 (268)
                      .+|+|.|+ |++|..++..+...|. ++++++
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gvg~i~lvD   61 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGVGNLTLLD   61 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCCeEEEEC
Confidence            58999998 9999999999999999 777766

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.89  Score=31.63  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..++++++.+|.+|+..++...        ..........   ++.+.+++     .|++.-+..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~--------~~~~~~~~~~---~l~ell~~-----sDii~i~~p  105 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENK--------LPLGNATQVQ---HLSDLLNM-----SDVVSLHVP  105 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC--------CCCTTCEECS---CHHHHHHH-----CSEEEECCC
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEeecccccc--------chhhhhhhhh---hHHHHHhh-----ccceeeccc
Confidence            5789999997 99999999999999999999986422        1111111121   45555554     688877665


Q ss_pred             h-h-h----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G-K-L----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~-~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      - + +    =...++.++++..+|.++-
T Consensus       106 lt~~T~~li~~~~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         106 ENPSTKNMMGAKEISLMKPGSLLINASR  133 (188)
T ss_dssp             SSTTTTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             CCcchhhhccHHHHhhCCCCCEEEEcCc
Confidence            2 2 1    2577888888888888755

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.96  E-value=0.17  Score=35.27  Aligned_cols=83  Identities=22%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+++|.|+|. |.+|..++++++.+|.+|++.++++.+        +.....  .   ++.+.++     ..|+++-++.
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~--------~~~~~~--~---~l~ell~-----~sDiv~~~~p  101 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKE--------GPWRFT--N---SLEEALR-----EARAAVCALP  101 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCC--------SSSCCB--S---CSHHHHT-----TCSEEEECCC
T ss_pred             cCceEEEecc-ccccccceeeeeccccccccccccccc--------cceeee--e---chhhhhh-----ccchhhcccc
Confidence            5789999997 999999999999999999999876321        111111  1   3333333     3788887665


Q ss_pred             h--hh----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G--KL----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~--~~----~~~~~~~l~~~G~~v~~g~  180 (268)
                      -  ++    =...++.++++..+|.++.
T Consensus       102 l~~~t~~li~~~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         102 LNKHTRGLVKYQHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             cccccccccccceeeeccccceEEeccc
Confidence            2  21    1567788899999888865

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.82  E-value=0.66  Score=31.79  Aligned_cols=93  Identities=14%  Similarity=0.055  Sum_probs=61.6

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC------eee---ecCChhhHHHHHHHHCCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD------EAF---NYKEEADLNAALKRYFPE  148 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~------~v~---~~~~~~~~~~~~~~~~~~  148 (268)
                      -.|++++|.|-+.-+|.=+..++...|+.|+....... ...   ..+.+      .+-   .+..+ .+.+..++    
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~-~lk~~~~~----   97 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI-QKF---TRGESLKLNKHHVEDLGEYSED-LLKKCSLD----   97 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE-EEE---ESCCCSSCCCCEEEEEEECCHH-HHHHHHHH----
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccc-ccc---ccccceeeeeeccccccccchh-HHhhcccc----
Confidence            46899999999888999999999999999987663311 100   01111      111   12221 34444443    


Q ss_pred             CccEEEeCCChhhHHhHHHhhhcCCEEEEEcc
Q 024411          149 GIDIYFENVGGKLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       149 ~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       .|+++-++|.+.+.---+.+++|..++.+|.
T Consensus        98 -aDIvIsavG~p~~~i~~d~ik~GavvIDvGi  128 (171)
T d1edza1          98 -SDVVITGVPSENYKFPTEYIKEGAVCINFAC  128 (171)
T ss_dssp             -CSEEEECCCCTTCCBCTTTSCTTEEEEECSS
T ss_pred             -CCEEEEccCCCccccChhhcccCceEeeccc
Confidence             8999999998765555567888888888876

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.023  Score=39.18  Aligned_cols=92  Identities=18%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHH---HHHhcCCC--eeeecCChhhHHHHHHHHCCCCccEEEe
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDL---LKNKFGFD--EAFNYKEEADLNAALKRYFPEGIDIYFE  155 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~---~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~~~d~v~d  155 (268)
                      +|.|+|++|-+|+++++++... ++++.....++.....   +.+..+..  .+...+.   +. .    ....+|+++|
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~---~~-~----~~~~~DViID   77 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS---LD-A----VKDDFDVFID   77 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESC---ST-T----TTTSCSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeecc---HH-H----HhcccceEEE
Confidence            5899999999999999988765 5677666533221110   00001110  0111111   00 0    1125899999


Q ss_pred             CCChhhHHhHHHhhhcCCEEEEEccc
Q 024411          156 NVGGKLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      ++..+.....++.....+.=+.+|..
T Consensus        78 Fs~p~~~~~~~~~a~~~~~~~ViGTT  103 (162)
T d1diha1          78 FTRPEGTLNHLAFCRQHGKGMVIGTT  103 (162)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             eccHHHHHHHHHHHHhccceeEEecC
Confidence            99998888888888888877777763

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=90.77  E-value=0.27  Score=36.33  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=60.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      .+....+||=+|  +|.|..+..+++.. +.++++.+. ++..+.+++   +.+....+..... ++.    +..+.++|
T Consensus        78 d~~~~~~vlDvG--~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~-d~~----~~~p~~~D  149 (256)
T d1qzza2          78 DWSAVRHVLDVG--GGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-DFF----KPLPVTAD  149 (256)
T ss_dssp             CCTTCCEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTT----SCCSCCEE
T ss_pred             CCccCCEEEEEC--CCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeee-ecc----ccccccch
Confidence            456778899998  46789999999987 569999985 554544432   3343221111111 111    11223688


Q ss_pred             EEEeCC-----Ch----hhHHhHHHhhhcCCEEEEEcc
Q 024411          152 IYFENV-----GG----KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       152 ~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      +++-..     ..    ..+..+.+.|+|+|+++.+..
T Consensus       150 ~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         150 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            876321     21    246788899999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.59  E-value=0.13  Score=34.42  Aligned_cols=87  Identities=10%  Similarity=-0.022  Sum_probs=48.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHhcCCCee-eecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLG---CYVVGSAGSKDKVDLLKNKFGFDEA-FNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g---~~V~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +|.|.||+|-+|+-+++++..++   .++..+.++...-+... ..+.+.. .+.... .         ..++|++|-+.
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-~~~~~~~~~~~~~~-~---------~~~~d~vf~a~   72 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAESSLRVGDVDSF-D---------FSSVGLAFFAA   72 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETTEEEECEEGGGC-C---------GGGCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-eccccchhccchhh-h---------hccceEEEecC
Confidence            58999999999999999997443   37776664422111111 0011111 111110 0         12589999999


Q ss_pred             ChhhHHhHH-HhhhcCCEEEEEc
Q 024411          158 GGKLLDAVL-PNMKIRGRIAACG  179 (268)
Q Consensus       158 g~~~~~~~~-~~l~~~G~~v~~g  179 (268)
                      +........ .....+.+++..+
T Consensus        73 p~~~s~~~~~~~~~~g~~VID~S   95 (144)
T d2hjsa1          73 AAEVSRAHAERARAAGCSVIDLS   95 (144)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETT
T ss_pred             CcchhhhhccccccCCceEEeec
Confidence            985544444 4444555666543

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.50  E-value=0.29  Score=36.08  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      -.+.+|+|.|- |.+|..+++++...|++|+++..
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence            46789999996 99999999999999999998864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.11  Score=39.48  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      ++|||+||+|-+|..++..+...|..|+++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecC
Confidence            57999999999999999999999998887764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.10  E-value=0.22  Score=35.29  Aligned_cols=85  Identities=22%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      .+.+|.|+|. |.+|..++++++.+|.+|++.++...+        +....+.+.   ++.+.+++     .|++.-++.
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~--------~~~~~~~~~---~l~~l~~~-----~D~v~~~~p  106 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMK--------GDHPDFDYV---SLEDLFKQ-----SDVIDLHVP  106 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS--------SCCTTCEEC---CHHHHHHH-----CSEEEECCC
T ss_pred             cceeeeeeec-ccccccccccccccceeeeccCCccch--------hhhcchhHH---HHHHHHHh-----cccceeeec
Confidence            4689999997 999999999999999999999865321        111112222   44444443     687776654


Q ss_pred             h-hh-----HHhHHHhhhcCCEEEEEcc
Q 024411          159 G-KL-----LDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~-----~~~~~~~l~~~G~~v~~g~  180 (268)
                      . +.     -...+..|+++..+|.++-
T Consensus       107 lt~~T~~li~~~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         107 GIEQNTHIINEAAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             CCGGGTTSBCHHHHHHSCTTEEEEECSC
T ss_pred             ccccccccccHHHhhccCCceEEEeccc
Confidence            2 21     2467778888888888755

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.94  E-value=0.64  Score=36.37  Aligned_cols=89  Identities=21%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCCe--------------eeecCChhhHHHHHHHHCCCCc
Q 024411           89 SGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF---GFDE--------------AFNYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        89 ~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~---g~~~--------------v~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      -++.|...+++++..|+ +|++.+.+++..+.+++.+   +...              .+..... +....+.+ .+..|
T Consensus        53 ~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~-Da~~~~~~-~~~~f  130 (375)
T d2dula1          53 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD-DANRLMAE-RHRYF  130 (375)
T ss_dssp             SCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES-CHHHHHHH-STTCE
T ss_pred             CCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh-hhhhhhHh-hcCcC
Confidence            46678888999998888 8999999999888876432   1110              0111111 23333332 23379


Q ss_pred             cEE-EeCCCh--hhHHhHHHhhhcCCEEEEEc
Q 024411          151 DIY-FENVGG--KLLDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v-~d~~g~--~~~~~~~~~l~~~G~~v~~g  179 (268)
                      |+| +|..|.  +.++.+++.++.+|-+....
T Consensus       131 DvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         131 HFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence            966 799886  67899999999888766553

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.88  E-value=0.21  Score=38.21  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .+.|+|+|| |..|+.++..+...|.+|.++..++
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCC
Confidence            467999998 9999999999998999999999664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.72  E-value=0.37  Score=32.35  Aligned_cols=46  Identities=17%  Similarity=0.016  Sum_probs=37.1

Q ss_pred             HHHHHhhhhcCCCCCcEEEEe--cCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           66 TAYVGFYEVCSPKHGECVFIS--AASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        66 ~a~~~l~~~~~~~~~~~vlI~--ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      |...++.  ....+++.++|.  |+ |-+|+.+++.+..+|.+|.++.+.+
T Consensus        27 t~~d~l~--~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVMD--GKKKIGKRVVILNADT-YFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CHHHHHH--TCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHhc--CccccCCceEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCC
Confidence            5556653  356788888887  54 8899999999999999999999764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.63  E-value=0.25  Score=37.21  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      .+.+|+|.|- |.+|..+++++...|++|+.+..
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            5789999997 99999999999999999998874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.61  E-value=0.19  Score=37.09  Aligned_cols=32  Identities=22%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSK  114 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~  114 (268)
                      .|+|.|| |..|++++.+++..|. +|.+..+++
T Consensus         3 ~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGA-GIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            5899998 9999999999999996 888877653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.37  E-value=0.28  Score=33.52  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCH
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSK  114 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~  114 (268)
                      .|++|+|.|| |..|+.+++.++.++.  +|+++.+.+
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3789999998 9999999999988874  888887554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=1.3  Score=32.96  Aligned_cols=98  Identities=15%  Similarity=0.233  Sum_probs=56.9

Q ss_pred             CCCCCcEEEEec-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeee-ecCChhhHHHHHHHHCCCCc
Q 024411           76 SPKHGECVFISA-ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN---KFGFDEAF-NYKEEADLNAALKRYFPEGI  150 (268)
Q Consensus        76 ~~~~~~~vlI~g-a~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~---~~g~~~v~-~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .++++++||=.. |.|+-...+.++  ..+.+|++.+.+..+...+++   .+|...+. ...+. ...   .....+.|
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l--~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~-~~~---~~~~~~~f  172 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEV--APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR-YPS---QWCGEQQF  172 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHH--CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT-CTH---HHHTTCCE
T ss_pred             CccccceeEeccCccccchhhhhhh--hhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccc-ccc---hhcccccc
Confidence            578899987664 444443333332  223589999999888766542   46775332 22221 111   11223479


Q ss_pred             cEEE-e--CCChhh--------------------------HHhHHHhhhcCCEEEEEc
Q 024411          151 DIYF-E--NVGGKL--------------------------LDAVLPNMKIRGRIAACG  179 (268)
Q Consensus       151 d~v~-d--~~g~~~--------------------------~~~~~~~l~~~G~~v~~g  179 (268)
                      |.|+ |  |+|...                          +..++++++++|++|..-
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            9775 6  555321                          566777888888877654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.07  E-value=0.99  Score=30.00  Aligned_cols=38  Identities=21%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL  120 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~  120 (268)
                      +|-|+|. |.+|...+.-+...|.+|++..+.+.+....
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~   39 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIE   39 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred             EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence            4778886 9999999999999999999887665544433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.05  E-value=0.27  Score=37.42  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++..+|+|+|| |--|+.++..+...|.+|.+...+
T Consensus         3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            45567999998 999999999999999999999854

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.03  E-value=0.16  Score=35.12  Aligned_cols=32  Identities=19%  Similarity=0.020  Sum_probs=27.1

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSA  111 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~  111 (268)
                      .+++|+|.|| |.+|.-++..++.+|.++.++.
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEE
Confidence            5689999998 9999999999999998655544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.65  E-value=0.21  Score=36.43  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=27.7

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      |+|+|| |..|+.++..+...|.+|+++.+++
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            789998 9999999888889999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.63  E-value=0.21  Score=36.68  Aligned_cols=32  Identities=28%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD  115 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~  115 (268)
                      |+|+|| |+.|++++..+...|.+|.++.+++.
T Consensus         7 ViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           7 NIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            789998 99999999999999999999997754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.61  E-value=0.21  Score=35.58  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=27.3

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      |+|+|+ |+.|+.++..+..+|.+|+++...
T Consensus         6 vvVIGg-GpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           6 VVIIGG-GPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEec
Confidence            788898 999999999999999999999854

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.12  Score=38.04  Aligned_cols=46  Identities=11%  Similarity=-0.142  Sum_probs=32.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK  123 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~  123 (268)
                      ...++.+||=+|+ | .|.....+++..+.+|++++-|+...+.+++.
T Consensus        48 ~~~~g~~vLDlGc-G-~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          48 GGLQGDTLIDIGS-G-PTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             TSCCEEEEEESSC-T-TCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCEEEEECC-C-CCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            3567888998887 3 35444445544444899999999998888743

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.23  Score=34.25  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      -|+|+|| |+.|+.++..+...|.+|.++.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEE
Confidence            3789998 99999999999999999999985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.47  E-value=0.2  Score=38.35  Aligned_cols=90  Identities=26%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHCC-
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYFP-  147 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~~-  147 (268)
                      .+.++++||-+|+ | .|..++.+++ .|+ +|++++.++. ...+++   ..+...   ++..+.. ++      ..+ 
T Consensus        30 ~~~~~~~VLDiGc-G-~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~-~~------~~~~   98 (316)
T d1oria_          30 HLFKDKVVLDVGS-G-TGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVE-EV------ELPV   98 (316)
T ss_dssp             HHHTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTT-TC------CCSS
T ss_pred             ccCCcCEEEEEec-C-CcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHH-Hc------cccc
Confidence            3557899999986 3 4766666555 676 8999997754 333221   233322   2222221 11      012 


Q ss_pred             CCccEEEe-CCCh---------hhHHhHHHhhhcCCEEE
Q 024411          148 EGIDIYFE-NVGG---------KLLDAVLPNMKIRGRIA  176 (268)
Q Consensus       148 ~~~d~v~d-~~g~---------~~~~~~~~~l~~~G~~v  176 (268)
                      +.+|+++. ..+.         ..+....+.|+|+|+++
T Consensus        99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            37898864 3321         12345567899999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.12  Score=36.12  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=29.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++..|+|+|| |+.|+.++..+...|.+|+++.+.
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEee
Confidence            3457999998 999999999999999999999754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.39  E-value=1.8  Score=29.46  Aligned_cols=42  Identities=17%  Similarity=0.036  Sum_probs=36.2

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF  126 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~  126 (268)
                      |-|+|. |.+|...+.-+...|.+|++.++++++.+.+. +.+.
T Consensus         4 IGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~-~~~~   45 (178)
T d1pgja2           4 VGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFM-KANA   45 (178)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-HHTT
T ss_pred             EEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HcCC
Confidence            678886 99999999999899999999999999998887 4443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=88.33  E-value=0.52  Score=35.96  Aligned_cols=99  Identities=17%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CC--Ce--eeecCChhhHHHHHHHH-
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKF---GF--DE--AFNYKEEADLNAALKRY-  145 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~---g~--~~--v~~~~~~~~~~~~~~~~-  145 (268)
                      ..+.+|++||-..+  +.|..++.++ ..|+ +|+.++.++...+.+++.+   +.  ..  .+..    +..+.++.. 
T Consensus       140 ~~~~~g~~VLdlf~--~~G~~sl~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~----d~~~~l~~~~  212 (317)
T d2b78a2         140 NGSAAGKTVLNLFS--YTAAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM----DVFDYFKYAR  212 (317)
T ss_dssp             HTTTBTCEEEEETC--TTTHHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES----CHHHHHHHHH
T ss_pred             HHhhCCCceeecCC--CCcHHHHHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc----cHHHHHHHHH
Confidence            34678999987753  2333344433 4576 8999999988877776432   22  21  2222    333333332 


Q ss_pred             -CCCCccEEE-eCCC--h-------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          146 -FPEGIDIYF-ENVG--G-------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       146 -~~~~~d~v~-d~~g--~-------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                       .++.||+|+ |.-.  .             +.+..++++|+|+|.++....
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             123799876 4221  0             245678889999998887643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.20  E-value=0.47  Score=31.93  Aligned_cols=35  Identities=17%  Similarity=-0.001  Sum_probs=29.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS  113 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~  113 (268)
                      .-+++|+|+|| |.+|.-++..+..+|+ .|+++.+.
T Consensus        43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence            34678999998 9999999999999998 67777754

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.86  E-value=0.2  Score=38.67  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=25.4

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCC--EEEEEe
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGC--YVVGSA  111 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~  111 (268)
                      .+|||+||+|-+|..++..+...|.  +|++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            4799999999999999998887776  455554

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.84  E-value=1.4  Score=30.24  Aligned_cols=88  Identities=11%  Similarity=-0.009  Sum_probs=48.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH---HHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK---VDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +|.|.||+|-+|+-+++++..+-. ++..+.++...   .......+-....+...   +......     ..|++|-+.
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~---~~~~~~~-----~~dvvf~a~   74 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEF---DPEKVSK-----NCDVLFTAL   74 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCC---CHHHHHH-----HCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcccccccc---CHhHhcc-----ccceEEEcc
Confidence            588999999999999999987754 77766644321   22111011111122111   2222222     389999999


Q ss_pred             ChhhHHhHHHhhhcCCEEEEE
Q 024411          158 GGKLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G~~v~~  178 (268)
                      +........... .+.+++..
T Consensus        75 p~~~s~~~~~~~-~~~~VIDl   94 (176)
T d1vkna1          75 PAGASYDLVREL-KGVKIIDL   94 (176)
T ss_dssp             STTHHHHHHTTC-CSCEEEES
T ss_pred             ccHHHHHHHHhh-ccceEEec
Confidence            874433333322 34555554

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.27  Score=36.40  Aligned_cols=48  Identities=8%  Similarity=-0.196  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g  125 (268)
                      ....+.++|=+|+ |+ |...+..+.....+|++++-++...+.+++.+.
T Consensus        51 g~~~g~~vLDiGc-G~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          51 GEVSGRTLIDIGS-GP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             SCSCCSEEEEETC-TT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEecc-CC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHh
Confidence            4557889999997 33 444444444556699999999999998874443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.36  Score=37.07  Aligned_cols=90  Identities=27%  Similarity=0.266  Sum_probs=50.4

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH---hcCCCe---eeecCChhhHHHHHHHHCCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKN---KFGFDE---AFNYKEEADLNAALKRYFPE  148 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...++++||-.|+ | .|..+..+++ .|+ +|++++.++ ....+++   +.+...   ++..+.. ++      ..+.
T Consensus        35 ~~~~~~~VLDlGc-G-tG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~-~l------~~~~  103 (328)
T d1g6q1_          35 DLFKDKIVLDVGC-G-TGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLE-DV------HLPF  103 (328)
T ss_dssp             HHHTTCEEEEETC-T-TSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTT-TS------CCSS
T ss_pred             ccCCcCEEEEeCC-C-CCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehh-hc------cCcc
Confidence            4567899999986 3 4666654444 676 899999775 3333321   334322   2322221 11      1123


Q ss_pred             -CccEEEeC-CC----h-h----hHHhHHHhhhcCCEEE
Q 024411          149 -GIDIYFEN-VG----G-K----LLDAVLPNMKIRGRIA  176 (268)
Q Consensus       149 -~~d~v~d~-~g----~-~----~~~~~~~~l~~~G~~v  176 (268)
                       .+|+++.. .+    . .    .+....+.|+|+|+++
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence             79988752 22    1 1    2344457899999874

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=87.45  E-value=4.2  Score=30.03  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeee-ecCCh---------------
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFDEAF-NYKEE---------------  135 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~~v~-~~~~~---------------  135 (268)
                      ..+.++.. ++...+|..|++++..++.+|.+++++..   ++.+.+.++ .+|+.-++ .....               
T Consensus        55 g~~~~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~v~~~~~~~~a~~~~~~~~~~~  132 (292)
T d2bhsa1          55 GEIKPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMR-AYGAELILVTKEQGMEGARDLALEMANRG  132 (292)
T ss_dssp             TSCCTTSE-EEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHH-HTTCEEEEECTTTHHHHHHHHHHHHHHHT
T ss_pred             CCcCCCce-eeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHH-HhCCCcceeecccchHHHHHHHhhccccc
Confidence            44555665 45555699999999999999997776653   556777777 88885322 11110               


Q ss_pred             -----------h-------hHHHHHHHHCCCCccEEEeCCCh-hhH---HhHHHhhhcCCEEEEEcc
Q 024411          136 -----------A-------DLNAALKRYFPEGIDIYFENVGG-KLL---DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       136 -----------~-------~~~~~~~~~~~~~~d~v~d~~g~-~~~---~~~~~~l~~~G~~v~~g~  180 (268)
                                 +       ....++.+..++.+|.++-++|+ ..+   ...++...+..+++.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep  199 (292)
T d2bhsa1         133 EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQP  199 (292)
T ss_dssp             SSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred             cccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEecc
Confidence                       0       01223333344468999988875 443   344445556777766644

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=1.4  Score=28.37  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=48.2

Q ss_pred             CCcEEEEecCcchH-----------HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-Cee-eecCChhhHHHHHHHH
Q 024411           79 HGECVFISAASGAV-----------GQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGF-DEA-FNYKEEADLNAALKRY  145 (268)
Q Consensus        79 ~~~~vlI~ga~g~~-----------G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~-~~v-~~~~~~~~~~~~~~~~  145 (268)
                      ..+.|||+|+ |+.           +.-++..++..|++++.+..+++....   .+.. +++ +..-.. +...++.+.
T Consensus         6 ~~kkvlilGs-Gp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst---d~d~aD~lYfePlt~-e~v~~Ii~~   80 (127)
T d1a9xa3           6 DIKSILILGA-GPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT---DPEMADATYIEPIHW-EVVRKIIEK   80 (127)
T ss_dssp             SCCEEEEECC-CSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG---CGGGSSEEECSCCCH-HHHHHHHHH
T ss_pred             CCCEEEEECC-CcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc---ChhhcceeeeecCCH-HHHHHHHHH
Confidence            4578999996 663           345566667789999999988775432   1222 222 212222 223333322


Q ss_pred             CCCCccEEEeCCCh-hhHHhHHHhhh
Q 024411          146 FPEGIDIYFENVGG-KLLDAVLPNMK  170 (268)
Q Consensus       146 ~~~~~d~v~d~~g~-~~~~~~~~~l~  170 (268)
                        +..|.++-..|+ ..+..+.++.+
T Consensus        81 --E~pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          81 --ERPDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             --HCCSEEECSSSHHHHHHHHHHHHH
T ss_pred             --hCcCCeEEEeeeehHhHHHHHHHH
Confidence              257788888887 44555555443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.82  E-value=0.31  Score=35.54  Aligned_cols=31  Identities=16%  Similarity=0.112  Sum_probs=27.3

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC-EEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC-YVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~  113 (268)
                      .|+|+|| |..|+.++..+...|. +|+++.++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECC
Confidence            4899998 9999999999999997 69998865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.67  E-value=1.7  Score=27.89  Aligned_cols=60  Identities=13%  Similarity=0.203  Sum_probs=45.3

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      ..+++...+.+++.-..-..-+.++++++.+|. ++++...+++..+.++ ++|++.+++..
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~-~~G~d~vi~p~  119 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFE-RLGVDVVVSPE  119 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHH-HTTCSEEECHH
T ss_pred             hhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHH-HCCCCEEECHH
Confidence            445677777776654444556788889999988 7888888888888888 99999888654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.61  E-value=0.32  Score=34.99  Aligned_cols=31  Identities=13%  Similarity=0.161  Sum_probs=27.7

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      |+|+|| |-.|+.++..+...|.+|.++.+++
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            788997 9999999999999999999999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.44  E-value=0.36  Score=34.38  Aligned_cols=30  Identities=27%  Similarity=0.265  Sum_probs=27.4

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++|+|+ |+.|+.++..+..+|.+|.++.+.
T Consensus         8 lvVIG~-GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           8 LLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            788897 999999999999999999999854

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=86.44  E-value=0.64  Score=30.99  Aligned_cols=88  Identities=22%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHc----CCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLL----GCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENV  157 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~----g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~  157 (268)
                      +|.|.||+|-+|+-.++++..+    ..++....++...-. .. .++.......... +. ..+     ..+|++|-|+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk-~~-~~~~~~~~~~~~~-~~-~~~-----~~~DvvF~al   72 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP-AP-NFGKDAGMLHDAF-DI-ESL-----KQLDAVITCQ   72 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB-CC-CSSSCCCBCEETT-CH-HHH-----TTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc-cc-ccCCcceeeeccc-ch-hhh-----ccccEEEEec
Confidence            4889999999999999866432    347766654422111 01 1111111111111 11 111     2589999999


Q ss_pred             ChhhHHhHHHhhhcCC-E--EEEE
Q 024411          158 GGKLLDAVLPNMKIRG-R--IAAC  178 (268)
Q Consensus       158 g~~~~~~~~~~l~~~G-~--~v~~  178 (268)
                      ++..-......+...| +  ++..
T Consensus        73 p~~~s~~~~~~l~~~g~~~~VIDl   96 (147)
T d1mb4a1          73 GGSYTEKVYPALRQAGWKGYWIDA   96 (147)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEES
T ss_pred             CchHHHHHhHHHHHcCCceEEEeC
Confidence            9866555555555444 3  5554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.24  E-value=0.73  Score=29.15  Aligned_cols=34  Identities=9%  Similarity=-0.024  Sum_probs=27.4

Q ss_pred             CcEEEEecCcchHHHHHHHHHHHc---CCEEEEEeCCH
Q 024411           80 GECVFISAASGAVGQLVGQFAKLL---GCYVVGSAGSK  114 (268)
Q Consensus        80 ~~~vlI~ga~g~~G~~~i~l~~~~---g~~V~~~~~~~  114 (268)
                      .++++|.|| |.+|.-+++++..+   |.+|.++.+++
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            478999998 99998888776654   77999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.09  E-value=0.31  Score=36.89  Aligned_cols=32  Identities=22%  Similarity=0.072  Sum_probs=28.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      .|+|+|| |..|++++..++..|.+|.+..+.+
T Consensus         9 dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            5899998 9999999999999999999998654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.08  E-value=0.87  Score=32.01  Aligned_cols=39  Identities=28%  Similarity=0.350  Sum_probs=34.6

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK  121 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~  121 (268)
                      +|.|+|. |-+|+.++..+...|.+|++.+.++++.+.+.
T Consensus         2 kI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            4778887 99999999999899999999999988888776

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.00  E-value=0.37  Score=37.43  Aligned_cols=30  Identities=17%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEE-EEEe
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYV-VGSA  111 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V-~~~~  111 (268)
                      +|||+||+|-+|..++..+...|.+| ++++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d   32 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            58999999999999999998889864 4444

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.41  Score=33.96  Aligned_cols=30  Identities=13%  Similarity=-0.002  Sum_probs=27.4

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      |+|+|| |+.|+.++..+..+|.+|.++.+.
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            789998 999999999999999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=85.96  E-value=0.31  Score=36.22  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      .|+|+|| |..|+.++..+...|.+|+++.++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence            3889998 999999999999999999999865

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.95  E-value=1  Score=30.94  Aligned_cols=90  Identities=13%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCH------HHHHHHHHhc-CCC--eeeecCChhhHHHHHHHHCCCCcc
Q 024411           82 CVFISAASGAVGQLVGQFAKLL-GCYVVGSAGSK------DKVDLLKNKF-GFD--EAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~-g~~V~~~~~~~------~~~~~~~~~~-g~~--~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      +|.|.||+|-+|+-+++++..+ ..++..+..+.      .+.......+ +..  ........ .       .....+|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~d   74 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDV-R-------DFSADVD   74 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCG-G-------GTCTTCC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhh-h-------hhhcccc
Confidence            6899999999999999999988 55765543211      1122211011 111  11111111 0       0112689


Q ss_pred             EEEeCCChhhHHhHHH-hhhcCCEEEEEc
Q 024411          152 IYFENVGGKLLDAVLP-NMKIRGRIAACG  179 (268)
Q Consensus       152 ~v~d~~g~~~~~~~~~-~l~~~G~~v~~g  179 (268)
                      ++|-|.+......... .+..+-+++..+
T Consensus        75 vvf~alp~~~s~~~~~~~~~~~~~vIDlS  103 (179)
T d2g17a1          75 VVFLATAHEVSHDLAPQFLQAGCVVFDLS  103 (179)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             eeeccccchhHHHHhhhhhhcCceeeccc
Confidence            9999999855444444 445555666654

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.65  E-value=2.5  Score=28.29  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFG  125 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g  125 (268)
                      +|+++.|++.+||.|.+++..+...|.++-  .-+++..+.+++.+.
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~--~l~~~t~~~L~~~lp   46 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLA--TLEEKTIEELRSFLP   46 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEEC--CCCHHHHHHHHHHSC
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccC--CCCHHHHHHHHHhCC
Confidence            578899998899999999999999997764  446777777773443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.54  E-value=0.44  Score=34.20  Aligned_cols=31  Identities=23%  Similarity=0.047  Sum_probs=27.7

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      |+|+|+ |+-|+.++..+...|.+|.++.+.+
T Consensus         9 viIIG~-GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGG-GPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            788897 9999999999999999999998543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=85.51  E-value=0.39  Score=35.39  Aligned_cols=31  Identities=6%  Similarity=0.050  Sum_probs=27.7

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      -|+|+|| |.+|++++..+...|.+|+++.+.
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899998 999999998888899999999865

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.49  E-value=0.5  Score=33.46  Aligned_cols=30  Identities=23%  Similarity=0.185  Sum_probs=26.8

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++|+|+ |+.|+.++..+...|.+|.++.+.
T Consensus         6 viVIG~-GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGA-GPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecC
Confidence            678897 999999999999999999999754

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.46  E-value=0.54  Score=36.66  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             EEEEecCcchHHHHHHH-HHHHcCCEEEEEe
Q 024411           82 CVFISAASGAVGQLVGQ-FAKLLGCYVVGSA  111 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~-l~~~~g~~V~~~~  111 (268)
                      +|||+||+|-+|..++. |++..|.+|++++
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            69999999999987665 5567899999986

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.17  E-value=1.3  Score=32.01  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             CCCcEEEEecCcchHHHHHHHHH-HHcCCEEEEEeC
Q 024411           78 KHGECVFISAASGAVGQLVGQFA-KLLGCYVVGSAG  112 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~-~~~g~~V~~~~~  112 (268)
                      -++.+|+|.|- |.+|..+++.+ +..|++|+.++.
T Consensus        29 l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          29 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeec
Confidence            46889999996 99999999987 567999998873

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.95  E-value=0.35  Score=36.53  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK  114 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~  114 (268)
                      -++|+|| |..|+.++..+...|.+|.++..++
T Consensus         3 dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGS-GLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECC-cHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3789998 9999999999988999999998653

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.63  E-value=6.4  Score=29.51  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=65.7

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCCeeeecC------------------
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSA---GSKDKVDLLKNKFGFDEAFNYK------------------  133 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~---~~~~~~~~~~~~~g~~~v~~~~------------------  133 (268)
                      ..++++...+|...+|..|+++...++.+|.+++++.   .++.+.+.++ .+|+.-+....                  
T Consensus        59 g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~-~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~  137 (320)
T d1z7wa1          59 GLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILL-AFGVELVLTDPAKGMKGAIAKAEEILAKT  137 (320)
T ss_dssp             TSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHH-HTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhh-ccCcceEEeeccccccccchhHHHHHHhC
Confidence            4456666677777789999999999999999766665   3455777777 88875332110                  


Q ss_pred             ----------Ch-------hhHHHHHHHHCCCCccEEEeCCCh-hhHH---hHHHhhhcCCEEEEEcc
Q 024411          134 ----------EE-------ADLNAALKRYFPEGIDIYFENVGG-KLLD---AVLPNMKIRGRIAACGM  180 (268)
Q Consensus       134 ----------~~-------~~~~~~~~~~~~~~~d~v~d~~g~-~~~~---~~~~~l~~~G~~v~~g~  180 (268)
                                ..       .....++.+...+.+|.++-++|+ ..+.   ..++...+.-+++.+..
T Consensus       138 ~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~  205 (320)
T d1z7wa1         138 PNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEP  205 (320)
T ss_dssp             TTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccc
Confidence                      00       012223333333468999988886 4443   34444556667766543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=4.2  Score=27.05  Aligned_cols=86  Identities=12%  Similarity=0.065  Sum_probs=53.6

Q ss_pred             EEEEecCcchHHHH-HHHHHHHc-CCEEEEEe-CCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeCCC
Q 024411           82 CVFISAASGAVGQL-VGQFAKLL-GCYVVGSA-GSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG  158 (268)
Q Consensus        82 ~vlI~ga~g~~G~~-~i~l~~~~-g~~V~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  158 (268)
                      +|.|+|. |.+|.- .+..++.. +.++++++ +++++.+.+.+.++... +  +   ++. .+.    ..+|+|+-|+.
T Consensus         3 ri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~-~--~---~~~-~l~----~~~D~V~I~tp   70 (164)
T d1tlta1           3 RIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY-A--D---SLS-SLA----ASCDAVFVHSS   70 (164)
T ss_dssp             EEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB-C--S---SHH-HHH----TTCSEEEECSC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc-c--c---cch-hhh----hhccccccccc
Confidence            5789996 888864 45555544 66887765 44555555444676542 2  1   222 222    24899998888


Q ss_pred             h-hhHHhHHHhhhcCCEEEEEcc
Q 024411          159 G-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       159 ~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      . .+...+..++..+-. |.+..
T Consensus        71 ~~~h~~~~~~al~~gk~-V~~EK   92 (164)
T d1tlta1          71 TASHFDVVSTLLNAGVH-VCVDK   92 (164)
T ss_dssp             TTHHHHHHHHHHHTTCE-EEEES
T ss_pred             chhccccccccccccce-eeccc
Confidence            7 677788888877654 55543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.20  E-value=4.6  Score=30.33  Aligned_cols=98  Identities=19%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             CCCCCcEEEEecC-cchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCChhhHHHHHHHHCCCC
Q 024411           76 SPKHGECVFISAA-SGAVGQLVGQFAKLLG--CYVVGSAGSKDKVDLLKN---KFGFDEAFNYKEEADLNAALKRYFPEG  149 (268)
Q Consensus        76 ~~~~~~~vlI~ga-~g~~G~~~i~l~~~~g--~~V~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .+++|+.||=..| +|+-   +.+++..++  ..+++.+.++.+...+++   .+|...++..... ...  + ....+.
T Consensus       113 ~~~~g~~vlD~CAapGgK---t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d-~~~--~-~~~~~~  185 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGK---TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS-SLH--I-GELNVE  185 (313)
T ss_dssp             CCCTTCEEEECCSSCSHH---HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC-GGG--G-GGGCCC
T ss_pred             cCCccceeeecccchhhh---hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccc-ccc--c-cccccc
Confidence            6789999876654 3332   444555443  479999999988766542   5676655433332 111  1 112236


Q ss_pred             ccEEE-e--CCChh--------------------------hHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYF-E--NVGGK--------------------------LLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~-d--~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ||.|+ |  |+|..                          .+..++++++++|++|..-.
T Consensus       186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            88665 5  44431                          15677888889998776543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=84.14  E-value=1.8  Score=29.38  Aligned_cols=93  Identities=17%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCe--------------ee--------ecCChh
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFDE--------------AF--------NYKEEA  136 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~~--------------v~--------~~~~~~  136 (268)
                      +|-|.|= |-+|.++...+...+.++..+-.   +.+....+. ++.-.+              .+        +.++. 
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLl-kyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-   78 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMF-KYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-   78 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH-HCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHH-hcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-
Confidence            4778885 99999999988888887777753   234555555 442211              01        10111 


Q ss_pred             hHHHHHHHHCCCCccEEEeCCCh-hhHHhHHHhhhcCCEEEEEccc
Q 024411          137 DLNAALKRYFPEGIDIYFENVGG-KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       137 ~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                       -.-.+.+   -++|+|+||+|- .....+..++..+-+-|.+..+
T Consensus        79 -~~i~W~~---~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP  120 (169)
T d1dssg1          79 -ENIPWSK---AGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP  120 (169)
T ss_dssp             -GGCCHHH---HTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             -HHCCccc---cCCCEEEecCceEcCHHHHHHHHhcCCceEeecCC
Confidence             0001111   169999999997 7777888889887766666543

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=7.2  Score=29.71  Aligned_cols=51  Identities=27%  Similarity=0.367  Sum_probs=38.8

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCC
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFD  127 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~  127 (268)
                      ..+++... +|...+|..|.+++..|+.+|.+++++..   ++.+.+.++ .+|+.
T Consensus        92 g~~~~~~~-vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~-~~GA~  145 (355)
T d1jbqa_          92 GTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLR-ALGAE  145 (355)
T ss_dssp             TCSCTTCE-EEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHH-HTTCE
T ss_pred             CCcccCce-EEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHH-hcCCe
Confidence            34556665 44555699999999999999998777753   556788887 88885

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.11  E-value=0.55  Score=33.50  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      -|+|+|+ |+-|+.++..+..+|.+|.++...
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEec
Confidence            3788997 999999999999999999999854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.05  E-value=0.49  Score=35.61  Aligned_cols=30  Identities=20%  Similarity=0.147  Sum_probs=27.0

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      |+|+|+ |..|+.++.-|...|++|+++.+.
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            799997 999999999999999999999854

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=0.52  Score=35.86  Aligned_cols=30  Identities=20%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      |+|+|| |..|+.++..++..|.+|+++.++
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence            788998 999999999999999999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=83.87  E-value=0.41  Score=36.64  Aligned_cols=31  Identities=19%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             EEEEecCcchHHHHHHHHHH-----HcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAK-----LLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~-----~~g~~V~~~~~~  113 (268)
                      -|+|.|| |..|++++.++.     ..|.+|.++.+.
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~   44 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKR   44 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCC
Confidence            3899998 999998887774     468999988864

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.83  E-value=3.8  Score=26.25  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++.+|++.|-+|.-|..-.+.++.+|-+|++-......-+.   ..|. -|+|.     ..+..++.   ++|.-+-+
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~---~~gi-PVf~t-----V~eA~~~~---~~daSvIf   79 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGL-PVFNT-----VKEAKEQT---GATASVIY   79 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTE-EEESS-----HHHHHHHH---CCCEEEEC
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCcc---ccCc-cchhh-----HHHHHHhc---CCcEEEEe
Confidence            5778899999999999999999999999998877733211110   0111 23322     22233322   35666666


Q ss_pred             CCh-hhHHhHHHhhhcCCEEEEE
Q 024411          157 VGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +.. .....+++.+..+=+++.+
T Consensus        80 VPp~~a~dAi~EAi~agI~liV~  102 (130)
T d1euca1          80 VPPPFAAAAINEAIDAEVPLVVC  102 (130)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEE
Confidence            666 4455666666666554443

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.81  E-value=2.3  Score=33.10  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCe
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFDE  128 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~~  128 (268)
                      +++++.+ +|...+|..|.+++..++.+|.+++++..   ++.+.+.++ .+|+.-
T Consensus       140 ~~~~g~~-VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ir-a~GAeV  193 (382)
T d1wkva1         140 RVEKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPR-LLGAQV  193 (382)
T ss_dssp             TSCTTCE-EEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHH-HTTCEE
T ss_pred             ccCCCCE-EEEeCCcHHHHHHHHHHHHcCCCEEEEeecccccccccccc-ccCcce
Confidence            4667765 55566799999999999999998777764   445777777 888853

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.68  E-value=0.52  Score=32.82  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=27.6

Q ss_pred             cEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           81 ECVFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        81 ~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      ..|+|+|| |+.|+.++..+...|.+++++.+
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCCCEEECC
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCcEEEEEe
Confidence            57999998 99999999999999999998874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.63  E-value=1.1  Score=29.98  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHH
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDK  116 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~  116 (268)
                      .++...|.|+|+ |.+|..++.++...+. +++..+.++++
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~   43 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGM   43 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEecccc
Confidence            356678999998 9999988888887775 88888766543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=0.68  Score=32.75  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=26.9

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      ++|+|+ |+.|+.++..+..+|.+|.++...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            678897 999999999999999999999753

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=83.37  E-value=6  Score=29.77  Aligned_cols=111  Identities=21%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             HHHHhhhhcCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeecCCh--------
Q 024411           67 AYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFDEAFNYKEE--------  135 (268)
Q Consensus        67 a~~~l~~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~~v~~~~~~--------  135 (268)
                      |++.+.....-.+...|+ ...+|..|.+++..++..|.+++++..   ++.+.+.++ .+|+.-++.....        
T Consensus        62 a~~~i~~~~~~~~~~~vv-~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~-~~Ga~vi~~~~~~~~~~~~~~  139 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVI-TASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVR-GFGGEVLLHGANFDEAKAKAI  139 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCE-EEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHH-HHSCEEECCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeee-ecccchhHHHHHHhhccccccceeeccccchhHHHHHHH-hcCCEEEEcCcccccchhhhh
Confidence            455554433333444444 444689999999999999997776653   445777777 8888533211110        


Q ss_pred             -----------------------hhHHHHHHHHCCCCccEEEeCCCh-hhH---HhHHHhhhcCCEEEEEcc
Q 024411          136 -----------------------ADLNAALKRYFPEGIDIYFENVGG-KLL---DAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       136 -----------------------~~~~~~~~~~~~~~~d~v~d~~g~-~~~---~~~~~~l~~~G~~v~~g~  180 (268)
                                             .....++.+.. +.+|.++-++|+ ..+   ...++.+.+..+++.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~  210 (331)
T d1tdja1         140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEA  210 (331)
T ss_dssp             HHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             hhhhcCCCccccccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecc
Confidence                                   01112222221 258999988885 433   445555567778777643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.32  E-value=2.4  Score=27.92  Aligned_cols=60  Identities=12%  Similarity=0.049  Sum_probs=47.0

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDKVDLLKNKFGFDEAFNYK  133 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~~~~~~~~~g~~~v~~~~  133 (268)
                      +.+++...+.+++.-..-..-..++..++.++.  ++++...+++..+.++ ++|++.+++..
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-~~Gad~vi~p~  126 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK-MVHPDIILSPQ  126 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHH-TTCCSEEECHH
T ss_pred             HHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHH-HCCCCEEECHH
Confidence            556788888888776555667778888887643  8999988888888898 99999888664

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.19  E-value=1.8  Score=27.59  Aligned_cols=37  Identities=11%  Similarity=0.032  Sum_probs=27.0

Q ss_pred             CcEEEEecCcchH-----------HHHHHHHHHHcCCEEEEEeCCHHHH
Q 024411           80 GECVFISAASGAV-----------GQLVGQFAKLLGCYVVGSAGSKDKV  117 (268)
Q Consensus        80 ~~~vlI~ga~g~~-----------G~~~i~l~~~~g~~V~~~~~~~~~~  117 (268)
                      .+.|||+|+ |+.           +.-++..++..|.+++.+..+++..
T Consensus         4 ~kkvlViGs-Gp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           4 REKIMVLGG-GPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SCEEEEECC-CSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCEEEEECC-CcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            468999996 663           3455666677899999998777643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=83.03  E-value=0.69  Score=32.48  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++.+||=+|+.  .|..+..+     .++++++.|+...+.++ +.+.. .+..+.. ++.     ...+.||+|+..
T Consensus        34 ~~~~~~vLDiGcG--~G~~~~~~-----~~~~giD~s~~~~~~a~-~~~~~-~~~~d~~-~l~-----~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIGVG--TGRFAVPL-----KIKIGVEPSERMAEIAR-KRGVF-VLKGTAE-NLP-----LKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEETCT--TSTTHHHH-----TCCEEEESCHHHHHHHH-HTTCE-EEECBTT-BCC-----SCTTCEEEEEEE
T ss_pred             hCCCCeEEEECCC--Cccccccc-----ceEEEEeCChhhccccc-ccccc-ccccccc-ccc-----cccccccccccc
Confidence            4566789999873  35544444     35789999999999988 54442 3333221 210     112379999764


Q ss_pred             CC-----h--hhHHhHHHhhhcCCEEEEEcc
Q 024411          157 VG-----G--KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       157 ~g-----~--~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ..     .  ..+..+.+.|+|+|+++....
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEec
Confidence            32     2  357889999999999887643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.70  E-value=0.63  Score=32.98  Aligned_cols=29  Identities=21%  Similarity=0.154  Sum_probs=26.4

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      |+|+|+ |+-|+.++..+...|.+|.++..
T Consensus         6 viIIGg-GpAGl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           6 VIVIGA-GPGGYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEec
Confidence            778897 99999999999999999999975

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.41  E-value=2.6  Score=31.75  Aligned_cols=101  Identities=17%  Similarity=0.082  Sum_probs=57.5

Q ss_pred             CCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCChhhHHHHHHHHC--CCC
Q 024411           76 SPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF---GFD-EAFNYKEEADLNAALKRYF--PEG  149 (268)
Q Consensus        76 ~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~~--~~~  149 (268)
                      ...++.+||=..+ + .|...+.++ ..|++|+.++.++...+.+++.+   |.. ..+.+... +..+.++...  ++.
T Consensus       129 ~~~~~~rVLdlf~-~-tG~~sl~aa-~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~-D~~~~l~~~~~~~~~  204 (309)
T d2igta1         129 TADRPLKVLNLFG-Y-TGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE-DAMKFIQREERRGST  204 (309)
T ss_dssp             HSSSCCEEEEETC-T-TCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS-CHHHHHHHHHHHTCC
T ss_pred             hccCCCeEEEecC-C-CcHHHHHHH-hCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC-CHHHhHHHHhhcCCC
Confidence            4567888987764 2 344555554 46889999999999888887432   332 11222222 4444444322  237


Q ss_pred             ccEEE-eCC--C--h------------hhHHhHHHhhhcCCEEEEEcc
Q 024411          150 IDIYF-ENV--G--G------------KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       150 ~d~v~-d~~--g--~------------~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      ||+|+ |.-  +  .            ..+..+..++.++|.++++..
T Consensus       205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            99876 421  1  0            123456677888887655533

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=82.31  E-value=0.63  Score=34.37  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      |+|+|| |-.|+.++.-+...|.+|+++.+.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            789998 999999999888899999999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.05  E-value=0.6  Score=35.38  Aligned_cols=31  Identities=26%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS  113 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~  113 (268)
                      -|+|+|+ |..|+.++.-+...|++|+++...
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899997 999999999999999999999854

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.01  E-value=0.72  Score=28.40  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             ceEEEEecCCCC----------CCCCCCeEEec--cc------cceeEeecCCcce
Q 024411            7 YGVAKVLDSENP----------EFNKGDLVWGM--TG------WEEYSLITAPHLF   44 (268)
Q Consensus         7 ~G~v~~vG~~v~----------~~~~Gd~V~~~--g~------~~~~~~v~~~~~~   44 (268)
                      .|.|++||++.-          .+++||+|+.-  ++      -.+|..++++.++
T Consensus        39 ~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg~~y~ii~e~dIl   94 (99)
T d1p3ha_          39 EGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVL   94 (99)
T ss_dssp             EEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTEEEEEEEGGGEE
T ss_pred             EEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECCEEEEEEEHHHEE
Confidence            689999998642          37899999875  11      1355555555544

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=3.3  Score=27.23  Aligned_cols=70  Identities=19%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             EEEEecCcchHHHHHHHHHH-HcC--CEEEEEeCCHHHHHHHHHhcCCC-----eeeecCChhhHHHHHHHHCCCCccEE
Q 024411           82 CVFISAASGAVGQLVGQFAK-LLG--CYVVGSAGSKDKVDLLKNKFGFD-----EAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~-~~g--~~V~~~~~~~~~~~~~~~~~g~~-----~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      .|.|+|++|.+|..++.+++ ..+  .++...+..+.....+.+-..+.     ..+....  ++. .++     +.|++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~--~~~-~~~-----~aDvv   73 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED--ATP-ALE-----GADVV   73 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSC--CHH-HHT-----TCSEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCC--Ccc-ccC-----CCCEE
Confidence            47899988999988777654 434  37777775543323333111221     1221121  222 332     48999


Q ss_pred             EeCCCh
Q 024411          154 FENVGG  159 (268)
Q Consensus       154 ~d~~g~  159 (268)
                      +-+.|.
T Consensus        74 vitaG~   79 (145)
T d2cmda1          74 LISAGV   79 (145)
T ss_dssp             EECCSC
T ss_pred             EECCCc
Confidence            998884

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.68  E-value=1.1  Score=28.32  Aligned_cols=34  Identities=9%  Similarity=-0.064  Sum_probs=27.4

Q ss_pred             CCcEEEEecCcchHHHHHHHHHHHcC---CEEEEEeCC
Q 024411           79 HGECVFISAASGAVGQLVGQFAKLLG---CYVVGSAGS  113 (268)
Q Consensus        79 ~~~~vlI~ga~g~~G~~~i~l~~~~g---~~V~~~~~~  113 (268)
                      ..++++|.|| |.+|.-++..+..++   .+|+++.++
T Consensus        19 ~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          19 PPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             cCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            4578999998 999998887777665   479988865

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=81.58  E-value=5.5  Score=27.63  Aligned_cols=71  Identities=20%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             hhcCCCCCcEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCcc
Q 024411           73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGID  151 (268)
Q Consensus        73 ~~~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~-~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d  151 (268)
                      ....+ .|++||=.|+ | .|..++. +...|+ +|+.++.+++..+.+++.......++.+-.        + .++.||
T Consensus        43 ~~~dl-~Gk~VLDlGc-G-tG~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~--------~-l~~~fD  109 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGT-G-NGILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS--------E-ISGKYD  109 (197)
T ss_dssp             HHTSS-BTSEEEEETC-T-TCHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGG--------G-CCCCEE
T ss_pred             HcCCC-CCCEEEEeCC-C-CcHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEehh--------h-cCCcce
Confidence            44455 5889999886 3 3555544 444565 899999999988888844433334433221        1 235799


Q ss_pred             EEEeC
Q 024411          152 IYFEN  156 (268)
Q Consensus       152 ~v~d~  156 (268)
                      +|+-.
T Consensus       110 ~Vi~N  114 (197)
T d1ne2a_         110 TWIMN  114 (197)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88854

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.46  E-value=8.5  Score=28.59  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=36.6

Q ss_pred             cCCCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCe
Q 024411           75 CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAG---SKDKVDLLKNKFGFDE  128 (268)
Q Consensus        75 ~~~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~---~~~~~~~~~~~~g~~~  128 (268)
                      ..+.+++.|+ ...+|.-|+++...++..|.+++++..   ++.+.+.++ .+|+..
T Consensus        56 g~~~~~~~vv-~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v  110 (310)
T d1y7la1          56 GTLTKGKEIV-DATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLC-GLGVNL  110 (310)
T ss_dssp             TSSCTTCEEE-ESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEE
T ss_pred             CCCCCCceee-eecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHH-HhCCce
Confidence            4456676555 455699999999999999996665542   344666666 777753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.43  E-value=2.4  Score=30.61  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHH-HcCCEEEEEeCC
Q 024411           78 KHGECVFISAASGAVGQLVGQFAK-LLGCYVVGSAGS  113 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~-~~g~~V~~~~~~  113 (268)
                      -.+.+|+|.|- |.+|..+++++. ..|++|+.+..+
T Consensus        30 l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            46899999997 999999999775 579999988754

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=1.8  Score=26.38  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             cceEEEEecCCCC---------CCCCCCeEEec---cc------cceeEeecCCccee
Q 024411            6 GYGVAKVLDSENP---------EFNKGDLVWGM---TG------WEEYSLITAPHLFK   45 (268)
Q Consensus         6 ~~G~v~~vG~~v~---------~~~~Gd~V~~~---g~------~~~~~~v~~~~~~~   45 (268)
                      -.|.|.+||++..         .+++||+|+.-   |+      -.+|..++++.+..
T Consensus        36 ~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg~~y~ii~e~dIla   93 (97)
T d1aono_          36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILA   93 (97)
T ss_dssp             CEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSSCEEEEEETTTEEE
T ss_pred             eeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECCEEEEEEEHHHEEE
Confidence            4689999997653         38999999874   21      12566666555443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.37  E-value=2.2  Score=28.23  Aligned_cols=38  Identities=24%  Similarity=0.143  Sum_probs=30.9

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHcCC--EEEEEeCCHHH
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLLGC--YVVGSAGSKDK  116 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~g~--~V~~~~~~~~~  116 (268)
                      ..+..|.|+|+ |.+|..++..+...+.  ++...+..+++
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            34568999997 9999998888887775  88888877765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.24  E-value=0.62  Score=33.38  Aligned_cols=29  Identities=17%  Similarity=0.044  Sum_probs=26.6

Q ss_pred             EEEecCcchHHHHHHHHHHHcCCEEEEEeC
Q 024411           83 VFISAASGAVGQLVGQFAKLLGCYVVGSAG  112 (268)
Q Consensus        83 vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~  112 (268)
                      |+|+|| |+-|+.++..+...|.+|.++..
T Consensus         6 viVIG~-GpaGl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           6 LIIIGG-GSGGLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEECC-SHHHHHHHHHHGGGCCCEEEECC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCeEEEEec
Confidence            788997 99999999999999999999974

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=81.24  E-value=7.3  Score=27.69  Aligned_cols=93  Identities=12%  Similarity=-0.008  Sum_probs=56.2

Q ss_pred             cEEEEecCcch----HHHHHHHHHHHc--CCEEEEEe-CCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEE
Q 024411           81 ECVFISAASGA----VGQLVGQFAKLL--GCYVVGSA-GSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIY  153 (268)
Q Consensus        81 ~~vlI~ga~g~----~G~~~i~l~~~~--g~~V~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v  153 (268)
                      =+|.|+|. |.    ++..-+...+..  ++++++++ ++.++.+.+.++++....-.++   ++.+.+.+   ..+|+|
T Consensus        17 irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~---~~iD~V   89 (237)
T d2nvwa1          17 IRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD---SLESFAQY---KDIDMI   89 (237)
T ss_dssp             EEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES---CHHHHHHC---TTCSEE
T ss_pred             eEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeec---chhhcccc---ccccee
Confidence            46889997 44    333333334433  56888664 5555655555477765433343   33333321   369999


Q ss_pred             EeCCCh-hhHHhHHHhhhcC-----CEEEEEcc
Q 024411          154 FENVGG-KLLDAVLPNMKIR-----GRIAACGM  180 (268)
Q Consensus       154 ~d~~g~-~~~~~~~~~l~~~-----G~~v~~g~  180 (268)
                      +.|+.. .+.+.+..+|..+     ++-|.+.-
T Consensus        90 ~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EK  122 (237)
T d2nvwa1          90 VVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEW  122 (237)
T ss_dssp             EECSCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred             eccCCCcchhhHHHHHHHhcccccCCceEEEec
Confidence            999987 6777888888765     45566654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=81.11  E-value=5.9  Score=26.68  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHhcCCC-----eeeecCCh----------hhHHHHHHH
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGCYVVGSAGS--KDKVDLLKNKFGFD-----EAFNYKEE----------ADLNAALKR  144 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~--~~~~~~~~~~~g~~-----~v~~~~~~----------~~~~~~~~~  144 (268)
                      +|.|.|= |-+|..+.+.+...+.++.++-..  .+....+. ++.-.     ..+...+.          -.......+
T Consensus         2 kigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl-~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           2 KVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLL-KYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhhee-ecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            4788886 999999999888888888776532  23444444 33221     00100000          000000111


Q ss_pred             HC-CC-CccEEEeCCCh-hhHHhHHHhhhcCCEEEEEcc
Q 024411          145 YF-PE-GIDIYFENVGG-KLLDAVLPNMKIRGRIAACGM  180 (268)
Q Consensus       145 ~~-~~-~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  180 (268)
                      .. .. ++|+|+||+|. ...+.+..++..+-+-|.+..
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSA  118 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA  118 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeeecc
Confidence            11 12 79999999997 677788888887765555543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.67  E-value=0.23  Score=37.82  Aligned_cols=24  Identities=8%  Similarity=0.105  Sum_probs=21.4

Q ss_pred             EEEEecCcchHHHHHHHHHHHcCC
Q 024411           82 CVFISAASGAVGQLVGQFAKLLGC  105 (268)
Q Consensus        82 ~vlI~ga~g~~G~~~i~l~~~~g~  105 (268)
                      +|||+||+|-+|..++..+...|.
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~   25 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAY   25 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC
Confidence            589999999999999998887765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.56  E-value=3.5  Score=31.11  Aligned_cols=90  Identities=10%  Similarity=0.044  Sum_probs=59.1

Q ss_pred             CCCcEEEEecCcchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHh---cCCCeeeecCChhhHHHHHHHHCCCCccE
Q 024411           78 KHGECVFISAASGAVGQLVGQFAKLL-GC-YVVGSAGSKDKVDLLKNK---FGFDEAFNYKEEADLNAALKRYFPEGIDI  152 (268)
Q Consensus        78 ~~~~~vlI~ga~g~~G~~~i~l~~~~-g~-~V~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~~~~~~d~  152 (268)
                      +..+++.|+|+ |..+..-++.+... .. +|.+..+++++.+.+.+.   .+.....  +.    .+.+     .+.|+
T Consensus       123 ~~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~--~~----~~a~-----~~aDi  190 (320)
T d1omoa_         123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASV--QP----AEEA-----SRCDV  190 (320)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEE--CC----HHHH-----TSSSE
T ss_pred             CCccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCcccc--ch----hhhh-----ccccE
Confidence            45578899996 99998877776654 44 899999998876554322   2332222  11    1122     24899


Q ss_pred             EEeCCCh--hhHHhHHHhhhcCCEEEEEccc
Q 024411          153 YFENVGG--KLLDAVLPNMKIRGRIAACGMI  181 (268)
Q Consensus       153 v~d~~g~--~~~~~~~~~l~~~G~~v~~g~~  181 (268)
                      |+-|+..  +.+..  +.++++-++..+|..
T Consensus       191 V~taT~s~~P~~~~--~~l~~G~hv~~iGs~  219 (320)
T d1omoa_         191 LVTTTPSRKPVVKA--EWVEEGTHINAIGAD  219 (320)
T ss_dssp             EEECCCCSSCCBCG--GGCCTTCEEEECSCC
T ss_pred             EEEeccCcccccch--hhcCCCCeEeecCCc
Confidence            9998876  33332  458999999998874

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=80.06  E-value=5.1  Score=25.20  Aligned_cols=90  Identities=17%  Similarity=0.192  Sum_probs=57.8

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++.+|++.|-+|.-|..-.+..+.+|-+|++-......-+.   ..|. -++|     ...+.+++.   ++|.-+-+
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~---~~gi-PVf~-----sV~eAv~~~---~~~~SvIf   70 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT---HLGL-PVFN-----TVREAVAAT---GATASVIY   70 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEE---ETTE-EEES-----SHHHHHHHH---CCCEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcc---cCCC-chhh-----HHHHHHHHh---CCCeEEEe
Confidence            4567899999999999999999999999998877743211110   1111 2443     333344432   35666666


Q ss_pred             CCh-hhHHhHHHhhhcCCEEEEE
Q 024411          157 VGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +.. .....+++.+..+=+++.+
T Consensus        71 VPp~~a~dA~~EAi~agI~~iV~   93 (119)
T d2nu7a1          71 VPAPFCKDSILEAIDAGIKLIIT   93 (119)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             ccHHHHHHHHHHHHHCCCCEEEE
Confidence            776 4566777888777555544

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.04  E-value=5.2  Score=25.25  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCChhhHHHHHHHHCCCCccEEEeC
Q 024411           77 PKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFEN  156 (268)
Q Consensus        77 ~~~~~~vlI~ga~g~~G~~~i~l~~~~g~~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~v~d~  156 (268)
                      +.++.+|++.|-+|..|..-.+.++.+|-+|++-......-+.   -.+ --+||     ...+.+++ +  ++|.-+=+
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~---~~g-iPVf~-----tV~eAv~~-~--~~d~SvIf   71 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME---VLG-VPVYD-----TVKEAVAH-H--EVDASIIF   71 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETT-EEEES-----SHHHHHHH-S--CCSEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcE---EEC-CchHh-----hHHHHHHh-c--CCeEEEEe
Confidence            4567799999999999999999999999998887743221110   011 12443     23334443 3  47777777


Q ss_pred             CCh-hhHHhHHHhhhcCCEEEEE
Q 024411          157 VGG-KLLDAVLPNMKIRGRIAAC  178 (268)
Q Consensus       157 ~g~-~~~~~~~~~l~~~G~~v~~  178 (268)
                      +.. .....+++.+..+-+++.+
T Consensus        72 VPp~~a~dAi~EAi~agI~liv~   94 (121)
T d1oi7a1          72 VPAPAAADAALEAAHAGIPLIVL   94 (121)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             eCHHHHHHHHHHHHhCCCcEEEE
Confidence            887 5567778888877666554