Citrus Sinensis ID: 024419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSRITKVET
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcHHHHHHHHHHHHHcHHHHHHHcccccHHEEEEEccccccccccccEEEEEEEcccccEEEccccccHHcccccHHcEEEEcccccccEcEEEcccccccEEEccccc
Coil and Loop (DISEMBL)
MAAEAEEmslkdkgneffkAGNYLKAAALYTQAikqdpsnptlfsNRAAAFLHLVKLNKALAdaettislnpqwekgyfrkgCILEAMEQYDDALSAFQTALqynpqsaeVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKsemsekygaeECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLdkektdtekyapivnvdkafesphthgscfQFLRQYAddsfssaaclvapksiisypqvykpiclersritkvet
Flexible Loop (DISEMBL)
maaeaeemslkdkgNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAettislnpqwekgYFRKGCILEAMEQYDDALSAFQTALQynpqsaevsrkIKRVSqlakdkkraqevenirsnvdmvQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKswhetskvdaKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPksiisypqvykpiclersritkvet
Low Complexity Region (SEG)
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSRITKVET
Disordered region (IsUnstruct)
****************FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY*************************************************KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLER********
Disordered Region (DISOPRED)
****A*E***KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR*********************************************HVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSRIT****
Disordered Region (DISEMBL)
**********KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY*************************EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSRITKVET
Disordered Region (DISPRO)
**A*AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVYKPICLERSRITKVET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q43468	569	Heat shock protein STI OS	no	no	0.421	0.198	0.403	2e-18
O54981	543	Stress-induced-phosphopro	yes	no	0.395	0.195	0.420	4e-17
Q3ZBZ8	543	Stress-induced-phosphopro	yes	no	0.388	0.191	0.420	7e-17
P31948	543	Stress-induced-phosphopro	yes	no	0.388	0.191	0.420	7e-17
Q4R8N7	543	Stress-induced-phosphopro	N/A	no	0.388	0.191	0.420	8e-17
O35814	543	Stress-induced-phosphopro	yes	no	0.361	0.178	0.420	8e-17
Q60864	543	Stress-induced-phosphopro	yes	no	0.361	0.178	0.420	9e-17
Q54DA8	564	Protein STIP1 homolog OS=	yes	no	0.518	0.246	0.347	3e-15
Q54IP0	539	DnaJ homolog subfamily C	no	no	0.402	0.200	0.348	1e-14
Q9H6T3	665	RNA polymerase II-associa	no	no	0.399	0.160	0.336	1e-14

>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           ++KGNE FK   Y +A   YT+AIK++P +   +SNRAA +  L  + + L DAE  I L
Sbjct: 385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIEL 444

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
           +P + KGY RKG +  +M++YD AL  ++  L+++P + E+   I+R V Q+ K
Sbjct: 445 DPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINK 498

Glycine max (taxid: 3847)

>sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 65/107 (60%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL+ +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELDSSCKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Cricetulus griseus (taxid: 10029)

>sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Bos taurus (taxid: 9913)

>sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Homo sapiens (taxid: 9606)

>sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Macaca fascicularis (taxid: 9541)

>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Rattus norvegicus (taxid: 10116)

>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 470

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Mus musculus (taxid: 10090)

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 25/164 (15%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KG E FK G + +A   + +AI+++P + T++SNR+AA+  L++   A+ DA+  I L
Sbjct: 383 KNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIEL 442

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAEVSRKI------------ 115
            P + KGY RKG  L AM +Y  AL  +   L+    NP+  ++SRK             
Sbjct: 443 EPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLT 502

Query: 116 --KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 157
             +R+ Q AKD     E++ I S+  M Q L     +MSE   A
Sbjct: 503 DEERLQQAAKDP----EIQKILSDPIMNQIL----KDMSENPAA 538

Dictyostelium discoideum (taxid: 44689)

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 4/112 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADA 64
           S K +GNE+F++ NY  A   +T+A+  DP     N  L+SNRAAA +HL ++++A+ D 
Sbjct: 237 SKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDC 296

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
            + ++++P + K Y R+       E Y+DA+  ++ A   +P++ E+ R IK
Sbjct: 297 TSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIK 348

Dictyostelium discoideum (taxid: 44689)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 68/113 (60%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    
Sbjct: 134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLA 193

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           ++LN  + K Y R+G    A+++ ++A   ++  L+  P + E + +++++SQ
Sbjct: 194 VALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQ 246

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
449455294	331	PREDICTED: RNA polymerase II-associated	0.925	0.749	0.846	1e-123
255552073	330	heat shock protein 70 (HSP70)-interactin	0.932	0.757	0.828	1e-121
224099829	334	predicted protein [Populus trichocarpa]	0.929	0.745	0.827	1e-121
224111122	334	predicted protein [Populus trichocarpa]	0.929	0.745	0.819	1e-121
297737096	329	unnamed protein product [Vitis vinifera]	0.944	0.768	0.806	1e-120
225432762	330	PREDICTED: serine/threonine-protein phos	0.944	0.766	0.806	1e-120
147769544	329	hypothetical protein VITISV_011488 [Viti	0.944	0.768	0.802	1e-120
449516834	338	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.925	0.733	0.819	1e-119
356537369	325	PREDICTED: RNA polymerase II-associated	0.947	0.781	0.783	1e-118
15219673	328	tetratricopeptide repeat-containing prot	0.932	0.762	0.792	1e-117

>gi|449455294|ref|XP_004145388.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/248 (84%), Positives = 228/248 (91%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLKDKGNEFFKAGNYLKAAALYTQAIK DPSN  L+SNRAAAFLHLVKLNKALADAE 
Sbjct: 18  EPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEM 77

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI L+PQWEKGYFRKGCILEAME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKK
Sbjct: 78  TIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKK 137

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD 186
           RAQEVE  RSN+DM +HLD+ KSE+SEKYG+EECWK +FSF+VETME AV+SWHETS VD
Sbjct: 138 RAQEVEKKRSNIDMTKHLDKLKSELSEKYGSEECWKDIFSFLVETMEAAVRSWHETSNVD 197

Query: 187 AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSI 246
           AKVY+LLD EKTDTEKYAP+VN+DKAFESPHTH  CFQFLR+YA+DS S AACLV PKS+
Sbjct: 198 AKVYYLLDNEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSL 257

Query: 247 ISYPQVYK 254
           ISYPQV+K
Sbjct: 258 ISYPQVWK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552073|ref|XP_002517081.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223543716|gb|EEF45244.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/250 (82%), Positives = 232/250 (92%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
            EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADA
Sbjct: 15  GEEVSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADA 74

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
           E TI+LNPQWEKGYFRKGC+LEAME+YDDA +AFQTAL+YNPQS+EVSRKIKR+SQLAK+
Sbjct: 75  EMTITLNPQWEKGYFRKGCVLEAMERYDDASAAFQTALKYNPQSSEVSRKIKRISQLAKE 134

Query: 125 KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSK 184
           KKRAQEVE++RSNVD+ +H D+ KSEMSEK G+EEC K +FSF+VETME AVKSWHETSK
Sbjct: 135 KKRAQEVESMRSNVDLAKHFDKLKSEMSEKIGSEECLKEIFSFLVETMEMAVKSWHETSK 194

Query: 185 VDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPK 244
           VD +VYFLLDKEKT ++KYAP VN+DKAFESPHTH SCF FLRQYA++SFS AACLVAPK
Sbjct: 195 VDPRVYFLLDKEKTQSDKYAPAVNIDKAFESPHTHSSCFTFLRQYAEESFSKAACLVAPK 254

Query: 245 SIISYPQVYK 254
           SIISYPQV+K
Sbjct: 255 SIISYPQVWK 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099829|ref|XP_002311636.1| predicted protein [Populus trichocarpa] gi|222851456|gb|EEE89003.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/249 (82%), Positives = 232/249 (93%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADAE
Sbjct: 20  EEISLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADAE 79

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
           TTI+LNPQWEKGYFRKGC+LEAMEQYD+AL+ FQ ALQYNP+S EVSRKIKR+SQLAKDK
Sbjct: 80  TTITLNPQWEKGYFRKGCVLEAMEQYDNALATFQIALQYNPRSTEVSRKIKRISQLAKDK 139

Query: 126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV 185
           KRAQEVE++RSNV+M +HL+  KSEMSE  G+EEC+K +FSF+VETMETAVKSWHE SKV
Sbjct: 140 KRAQEVESMRSNVNMEKHLETLKSEMSEMLGSEECFKEMFSFLVETMETAVKSWHEASKV 199

Query: 186 DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKS 245
           D +VYFLLDKEKT T+KYAP+VN+DKAFESPHTHG+CF FLRQYA+DSFS AAC+V PK+
Sbjct: 200 DPRVYFLLDKEKTLTDKYAPVVNIDKAFESPHTHGNCFSFLRQYAEDSFSKAACVVVPKN 259

Query: 246 IISYPQVYK 254
           IISYPQV+K
Sbjct: 260 IISYPQVWK 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111122|ref|XP_002315755.1| predicted protein [Populus trichocarpa] gi|222864795|gb|EEF01926.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/249 (81%), Positives = 229/249 (91%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADAE
Sbjct: 20  EEISLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADAE 79

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
           TTI LNPQWEKGYFRKGC+LE ME+YDDAL+ FQ ALQ+NPQS EVSRKIKR+SQLA+DK
Sbjct: 80  TTIKLNPQWEKGYFRKGCVLEGMERYDDALATFQIALQHNPQSTEVSRKIKRISQLARDK 139

Query: 126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV 185
           KRAQEV+++RSNVDM +HL+  KSEM EK G+EEC+K +FSF+VETMETAVKSWHE SKV
Sbjct: 140 KRAQEVQSMRSNVDMAKHLETLKSEMFEKLGSEECFKDMFSFLVETMETAVKSWHEASKV 199

Query: 186 DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKS 245
           D +VYFLLDKEKT T+KYAP+VN+DKAFESPH+H +CF FLRQYADDSFS AACLV PK+
Sbjct: 200 DPRVYFLLDKEKTQTDKYAPVVNIDKAFESPHSHSNCFSFLRQYADDSFSKAACLVVPKN 259

Query: 246 IISYPQVYK 254
           IISYPQV+K
Sbjct: 260 IISYPQVWK 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737096|emb|CBI26297.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 234/253 (92%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+E+E++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL+SNRAAAFLHLVKL KAL
Sbjct: 11  ASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKAL 70

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           ADAETTI+LNP WEKGYFRKGC+LEAME+YDD+L AF+ AL++NPQS+EVSRKIK+++QL
Sbjct: 71  ADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQL 130

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
           A+DKKR QEVEN RSNVDM +HL+  KSE+SEKYG  E WK +FSF VET+ETA+KSWHE
Sbjct: 131 ARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAEHWKSMFSFTVETIETAIKSWHE 190

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV 241
           TSKVDA+VYFLLDKEKT T+KYAP+VN+DKAFESPHTH SCF FLR YA++SFS AACLV
Sbjct: 191 TSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFSKAACLV 250

Query: 242 APKSIISYPQVYK 254
           APKSIISYPQV+K
Sbjct: 251 APKSIISYPQVWK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432762|ref|XP_002283155.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 234/253 (92%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+E+E++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL+SNRAAAFLHLVKL KAL
Sbjct: 12  ASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKAL 71

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           ADAETTI+LNP WEKGYFRKGC+LEAME+YDD+L AF+ AL++NPQS+EVSRKIK+++QL
Sbjct: 72  ADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQL 131

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
           A+DKKR QEVEN RSNVDM +HL+  KSE+SEKYG  E WK +FSF VET+ETA+KSWHE
Sbjct: 132 ARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAEHWKSMFSFTVETIETAIKSWHE 191

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV 241
           TSKVDA+VYFLLDKEKT T+KYAP+VN+DKAFESPHTH SCF FLR YA++SFS AACLV
Sbjct: 192 TSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFSKAACLV 251

Query: 242 APKSIISYPQVYK 254
           APKSIISYPQV+K
Sbjct: 252 APKSIISYPQVWK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769544|emb|CAN61400.1| hypothetical protein VITISV_011488 [Vitis vinifera]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/253 (80%), Positives = 233/253 (92%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+E+E++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL+SNRAAAFLHLVKL KAL
Sbjct: 11  ASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKAL 70

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           ADAETTI+LNP WEKGYFRKGC+LEAME+YDD+L AF+ AL++NPQS+EVSRKIK+++QL
Sbjct: 71  ADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQL 130

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
           A+DKKR QEVEN RSNVDM +HL+  KSE+SEKYG  E WK +FSF VET+ETA+KSWHE
Sbjct: 131 ARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAELWKSMFSFTVETIETAIKSWHE 190

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV 241
           TSKVDA+VYFLLDKEKT T+KYAP+VN+DKAFESPHTH SCF FLR YA++SF  AACLV
Sbjct: 191 TSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFXKAACLV 250

Query: 242 APKSIISYPQVYK 254
           APKSIISYPQV+K
Sbjct: 251 APKSIISYPQVWK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516834|ref|XP_004165451.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 227/255 (89%), Gaps = 7/255 (2%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLKDKGNEFFKAGNYLKAAALYTQAIK DPSN  L+SNRAAAFLHLVKLNKALADAE 
Sbjct: 18  EPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEM 77

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI L+PQWEKGYFRKGCILEAME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKK
Sbjct: 78  TIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKK 137

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSE-------KYGAEECWKHVFSFVVETMETAVKSW 179
           RAQEVE  RSN+DM +HLD+ KSE+S        KYG+EECWK +FSF+VETME AV+S 
Sbjct: 138 RAQEVEKKRSNIDMTKHLDKLKSELSHSLSIAVXKYGSEECWKDIFSFLVETMEAAVRSX 197

Query: 180 HETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAAC 239
           HETS VDAKVY+LLDKEKTDTEKYAP+VN+DKAFESPHTH  CFQFLR+YA+DS S AAC
Sbjct: 198 HETSNVDAKVYYLLDKEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAAC 257

Query: 240 LVAPKSIISYPQVYK 254
           LV PKS+ISYPQV+K
Sbjct: 258 LVTPKSLISYPQVWK 272

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537369|ref|XP_003537200.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 229/259 (88%), Gaps = 5/259 (1%)

Query: 1   MAAE-----AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV 55
           MAAE       EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTL+SNRAAA L L 
Sbjct: 1   MAAETKEVSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLD 60

Query: 56  KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
           KLNKAL DAE TI L PQWEKGYFRKG ILEAM++YDDAL+AFQ ALQYNPQS EV++KI
Sbjct: 61  KLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVTKKI 120

Query: 116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA 175
           K+++QL KD KRAQEVEN+RSNVDM +HLD FK+EMS KYG EE WK +FSF+VETMETA
Sbjct: 121 KKINQLMKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGLEEGWKDLFSFLVETMETA 180

Query: 176 VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFS 235
           VKSWHETS VDA+VYFLLDKEKTDT+KYAP+VN+DKAFESPHTHG+CF FLRQYA++SFS
Sbjct: 181 VKSWHETSSVDARVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFS 240

Query: 236 SAACLVAPKSIISYPQVYK 254
            AACLV PK+II+YPQV+K
Sbjct: 241 KAACLVTPKNIIAYPQVWK 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219673|ref|NP_171915.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|19423984|gb|AAL87273.1| unknown protein [Arabidopsis thaliana] gi|21281239|gb|AAM45091.1| unknown protein [Arabidopsis thaliana] gi|332189547|gb|AEE27668.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/250 (79%), Positives = 226/250 (90%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TL+SNRAAAFL LVKL+KALADAET
Sbjct: 15  EKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAET 74

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI LNPQWEKGYFRKGC+LEAME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K+K+
Sbjct: 75  TIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQ 134

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD 186
           RAQE+EN+RSNVDM +HL+ FKSEMSE YG EECWK +FSF+VETMETAVKSWHETSKVD
Sbjct: 135 RAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVD 194

Query: 187 AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSI 246
            +VYFLLDKEKT T+KYAP VN+DKAF+SP TH +CF +LRQYA++SFS AACLV PKS 
Sbjct: 195 TRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSS 254

Query: 247 ISYPQVYKPI 256
           ISYPQV+K +
Sbjct: 255 ISYPQVWKGV 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2020240	328	TPR3 "tetratricopeptide repeat	0.940	0.768	0.790	3e-108
FB|FBgn0024352	490	Hop "Hsp70/Hsp90 organizing pr	0.518	0.283	0.395	3e-20
WB|WBGene00019983	320	sti-1 [Caenorhabditis elegans	0.447	0.375	0.388	2.5e-19
TAIR|locus:2026197	571	Hop2 "Hop2" [Arabidopsis thali	0.421	0.197	0.412	5.4e-19
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.522	0.258	0.370	4.6e-18
UNIPROTKB|Q43468	569	STI "Heat shock protein STI" [	0.421	0.198	0.403	6.5e-18
TAIR|locus:2034620	572	Hop1 "Hop1" [Arabidopsis thali	0.421	0.197	0.385	8.5e-18
TAIR|locus:2139109	558	Hop3 "AT4G12400" [Arabidopsis	0.548	0.263	0.346	1.3e-17
UNIPROTKB|Q3ZBZ8	543	STIP1 "Stress-induced-phosphop	0.522	0.257	0.364	7.1e-17
UNIPROTKB|P31948	543	STIP1 "Stress-induced-phosphop	0.481	0.237	0.372	7.1e-17

TAIR|locus:2020240 TPR3 "tetratricopeptide repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 200/253 (79%), Positives = 229/253 (90%)

Query:     4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
             EAE+ SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TL+SNRAAAFL LVKL+KALAD
Sbjct:    13 EAEK-SLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALAD 71

Query:    64 AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
             AETTI LNPQWEKGYFRKGC+LEAME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K
Sbjct:    72 AETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQK 131

Query:   124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183
             +K+RAQE+EN+RSNVDM +HL+ FKSEMSE YG EECWK +FSF+VETMETAVKSWHETS
Sbjct:   132 EKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETS 191

Query:   184 KVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAP 243
             KVD +VYFLLDKEKT T+KYAP VN+DKAF+SP TH +CF +LRQYA++SFS AACLV P
Sbjct:   192 KVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTP 251

Query:   244 KSIISYPQVYKPI 256
             KS ISYPQV+K +
Sbjct:   252 KSSISYPQVWKGV 264

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

FB|FBgn0024352 Hop "Hsp70/Hsp90 organizing protein homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 57/144 (39%), Positives = 88/144 (61%)

Query:     4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
             +AEE   K++GN FFK G+Y  A   YT+AIK++P +P L+SNRAA +  L   +  L D
Sbjct:   309 KAEEE--KEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKD 366

Query:    64 AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
              +T I L+ ++ KGY RKG IL+ M+Q   A +A+Q AL+ +P +AE     ++ S    
Sbjct:   367 CDTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEAIEGYRQCSM--N 424

Query:   124 DKKRAQEV-ENIRSNVDMVQHLDE 146
              ++  QEV +N  S+ ++ Q L +
Sbjct:   425 FQRNPQEVLKNAMSDPEIQQILKD 448

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

WB|WBGene00019983 sti-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/121 (38%), Positives = 74/121 (61%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL D +T I L
Sbjct:   144 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 203

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKDKKRAQ 129
             + ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++  +    +D ++A+
Sbjct:   204 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPEKAK 263

Query:   130 E 130
             E
Sbjct:   264 E 264

GO:0000003 "reproduction" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0051879 "Hsp90 protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0032780 "negative regulation of ATPase activity" evidence=IDA

TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 47/114 (41%), Positives = 73/114 (64%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGN+FFK   Y  A   YT+AIK++P +P  +SNRAA +  L  + + L DAE  I L
Sbjct:   386 REKGNDFFKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIEL 445

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RKG +   M++YD+A+  +Q  L+++P + E+   +KR V Q+ K
Sbjct:   446 DPTFLKGYSRKGAVQFFMKEYDNAMETYQKGLEHDPNNQELLDGVKRCVQQINK 499

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 56/151 (37%), Positives = 89/151 (58%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGN+ F+ G+Y  A   Y++AIK++P +  LFSNRAA +  L++   AL D E  I+L
Sbjct:   363 KNKGNDAFQKGDYPLAMKHYSEAIKRNPYDAKLFSNRAACYTKLLEFQLALKDCEECINL 422

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKD---- 124
             +  + KGY RKG  LEAM+ +  A+  +Q AL+ +  S E +  ++R  VSQ  ++    
Sbjct:   423 DSTFIKGYTRKGAALEAMKDFSKAMDVYQKALELDSNSKEATEGLQRCMVSQAMRNDSPE 482

Query:   125 --KKRAQ---EVENIRSNVDMVQHLDEFKSE 150
               K+RA    EV+ I S+  M   L++ + +
Sbjct:   483 DVKRRAMADPEVQQIMSDPAMRMILEQMQKD 513

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q43468 STI "Heat shock protein STI" [Glycine max (taxid:3847)]

 Score = 226 (84.6 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 46/114 (40%), Positives = 72/114 (63%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGNE FK   Y +A   YT+AIK++P +   +SNRAA +  L  + + L DAE  I L
Sbjct:   385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIEL 444

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RKG +  +M++YD AL  ++  L+++P + E+   I+R V Q+ K
Sbjct:   445 DPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINK 498

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0009408 "response to heat" evidence=IDA

TAIR|locus:2034620 Hop1 "Hop1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 44/114 (38%), Positives = 74/114 (64%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGN+FFK   Y +A   YT+AIK++P++   +SNRAA++  L  + + L DAE  I L
Sbjct:   387 REKGNDFFKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASYTKLGAMPEGLKDAEKCIEL 446

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RK  +   +++YD+A+  +Q  L+++P + E+   +KR V Q+ K
Sbjct:   447 DPTFSKGYSRKAAVQFFLKEYDNAMETYQAGLEHDPSNQELLDGVKRCVQQINK 500

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 52/150 (34%), Positives = 85/150 (56%)

Query:     5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
             AEE   ++KGN FFK   Y +A   Y++AIK++P++   +SNRAA +  L  L + L DA
Sbjct:   369 AEEE--REKGNGFFKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACYTKLGALPEGLKDA 426

Query:    65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             E  I L+P + KGY RKG I   M++YD A+  +Q  L+++P++ E    ++R V Q+ K
Sbjct:   427 EKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQEFLDGVRRCVEQINK 486

Query:   124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153
               +     E ++          E ++ +S+
Sbjct:   487 ASRGDLTPEELKERQAKAMQDPEVQNILSD 516

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 55/151 (36%), Positives = 84/151 (55%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct:   364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKD---- 124
              P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R  ++Q  +     
Sbjct:   424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRCVMAQYNRHDSPE 483

Query:   125 --KKRAQ---EVENIRSNVDMVQHLDEFKSE 150
               K+RA    EV+ I S+  M   L++ + +
Sbjct:   484 DVKRRAMADPEVQQIMSDPAMRLILEQMQKD 514

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P31948 STIP1 "Stress-induced-phosphoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 48/129 (37%), Positives = 71/129 (55%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct:   364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130
              P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E
Sbjct:   424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPE 483

Query:   131 VENIRSNVD 139
                 R+  D
Sbjct:   484 DVKRRAMAD 492

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006950 "response to stress" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VIII0670 hypothetical protein (334 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-22
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-15
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-12
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-05
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	6e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 86.7 bits (215), Expect = 7e-22
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L + GN ++K G+Y +A   Y +A++ DP N   + N AAA+  L K  +AL D E  + 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           L+P   K Y+  G     + +Y++AL A++ AL+ +P 
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           MA + E     DK  E F   ++  A  LYTQAI  DP+N  L+++RA A + L    +A
Sbjct: 1   MAKDLE-----DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEA 55

Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           +ADA   I L+P   K Y RKG     +E+Y  A +A +      P  +  ++ IK   +
Sbjct: 56  VADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115

Query: 121 LAKD 124
              +
Sbjct: 116 KIAE 119

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-VKLNKALADAETTI 68
          LK+ GN  FK G+Y +A   Y +A++ DP N   + N A A+L L     +AL D E  +
Sbjct: 6  LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 69 SLNP 72
           L+P
Sbjct: 66 ELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
             LK+KGN+ ++  ++ KA  LY++AI+  P +P  +SNRAA    L    K + D    
Sbjct: 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAA 186

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAE-VSRKIKRVSQL 121
           + L+P + K   R+    + + +Y DAL    TA        N QSA+ V R +K+ ++ 
Sbjct: 187 LELDPDYSKALNRRANAYDGLGKYADALLDL-TASCIIDGFRNEQSAQAVERLLKKFAES 245

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSE 150
              +    + EN+ S   +  +L  F+ +
Sbjct: 246 KAKEILETKPENLPSVTFVGNYLQSFRPK 274

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 38/94 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG+     GN   A A Y +AI   P+N  +    A   +   +  +A   A+  +   P
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                ++ K  +    + Y+DA    Q AL+  P
Sbjct: 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/113 (22%), Positives = 42/113 (37%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78
           + GN  +A A   +A + +P         A  +L   +L KALA         P   + +
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604

Query: 79  FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
              G    A    + A+S+F+  L   P SA     +     + K+  +A   
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
                 +AG+Y +A A    A+ + P           A L   +L +A A     ++ +
Sbjct: 2  ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 72 PQ 73
          P 
Sbjct: 62 PD 63

Length = 65

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
             + KA  LY + +++DP+NP      A       K  +AL   +  ++  P     Y  
Sbjct: 100 KQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEA 159

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM 140
              +L A E + DAL A+Q AL   P + E + ++ R+         A            
Sbjct: 160 LAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAAR--------LA 211

Query: 141 VQHLDEFKSE 150
            Q+ D F  E
Sbjct: 212 KQYPDLFTPE 221

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           K  +  G     + +YD+AL  ++ AL+ NP 
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTI 68
           L   G      G Y +A  L  +A+K +P +      N    +L L K  +AL   E  +
Sbjct: 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
            L+P   +  +    +L  + +Y++AL A + AL+ +P
Sbjct: 230 ELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           +  +  G     +  YD+AL  ++ AL+ +P 
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           +  +  G     +  Y++AL A++ AL+ +P 
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISLNPQWEKGYFRKG 82
           KA   + +A+K +  +P ++ +RA   LH +K   A A  D + +I L+P +   + + G
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQ--LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440

Query: 83  CILEAMEQYDDALSAFQTALQYNPQSAEV 111
                      +++ F+   +  P++ +V
Sbjct: 441 VTQYKEGSIASSMATFRRCKKNFPEAPDV 469

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK11189	296	lipoprotein NlpI; Provisional	99.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.85
KOG0553	304	consensus TPR repeat-containing protein [General f	99.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.83
PRK15359	144	type III secretion system chaperone protein SscB;	99.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.81
PRK12370	553	invasion protein regulator; Provisional	99.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.79
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
KOG1125	579	consensus TPR repeat-containing protein [General f	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
PRK12370	553	invasion protein regulator; Provisional	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.73
KOG2076	895	consensus RNA polymerase III transcription factor	99.73
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.71
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.7
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.7
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.69
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.67
KOG1125	579	consensus TPR repeat-containing protein [General f	99.67
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.63
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.63
PLN02789	320	farnesyltranstransferase	99.63
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.62
PLN02789	320	farnesyltranstransferase	99.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.62
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.59
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.56
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
KOG4234	271	consensus TPR repeat-containing protein [General f	99.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.53
PRK15331	165	chaperone protein SicA; Provisional	99.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
KOG2076	895	consensus RNA polymerase III transcription factor	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.51
PRK14574	822	hmsH outer membrane protein; Provisional	99.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.47
KOG2003	840	consensus TPR repeat-containing protein [General f	99.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
KOG1129	478	consensus TPR repeat-containing protein [General f	99.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.41
PRK14574	822	hmsH outer membrane protein; Provisional	99.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.4
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.38
PRK10803	263	tol-pal system protein YbgF; Provisional	99.38
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.35
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.33
KOG0553	304	consensus TPR repeat-containing protein [General f	99.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.3
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.23
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.23
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.22
PF13512	142	TPR_18: Tetratricopeptide repeat	99.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.2
PF13371	73	TPR_9: Tetratricopeptide repeat	99.19
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.17
PF12688	120	TPR_5: Tetratrico peptide repeat	99.17
PF13371	73	TPR_9: Tetratricopeptide repeat	99.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.13
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.12
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.11
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.11
PRK11906	458	transcriptional regulator; Provisional	99.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.1
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.07
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.06
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.06
PRK15331	165	chaperone protein SicA; Provisional	99.05
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.04
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.02
KOG4555	175	consensus TPR repeat-containing protein [Function	99.02
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.99
PRK11906	458	transcriptional regulator; Provisional	98.98
PF12688	120	TPR_5: Tetratrico peptide repeat	98.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.91
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.91
PRK10803	263	tol-pal system protein YbgF; Provisional	98.9
PLN03218	1060	maturation of RBCL 1; Provisional	98.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.9
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.88
PLN03218	1060	maturation of RBCL 1; Provisional	98.87
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.87
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.85
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.83
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.82
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.78
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.74
PLN03077	857	Protein ECB2; Provisional	98.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.69
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.69
PF13428	44	TPR_14: Tetratricopeptide repeat	98.64
PF13428	44	TPR_14: Tetratricopeptide repeat	98.63
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.6
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.59
KOG4234	271	consensus TPR repeat-containing protein [General f	98.58
PF13431	34	TPR_17: Tetratricopeptide repeat	98.56
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.55
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.52
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.48
PLN03077	857	Protein ECB2; Provisional	98.47
PF13431	34	TPR_17: Tetratricopeptide repeat	98.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.44
KOG4555	175	consensus TPR repeat-containing protein [Function	98.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.39
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.39
PRK04841	903	transcriptional regulator MalT; Provisional	98.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.36
PRK04841	903	transcriptional regulator MalT; Provisional	98.35
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.27
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.26
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.23
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.18
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.16
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.1
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.08
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.08
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.02
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.0
KOG1310	758	consensus WD40 repeat protein [General function pr	97.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.99
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.92
KOG1586	288	consensus Protein required for fusion of vesicles	97.92
KOG2471	696	consensus TPR repeat-containing protein [General f	97.89
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.88
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.87
KOG1585	308	consensus Protein required for fusion of vesicles	97.86
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.84
KOG1586	288	consensus Protein required for fusion of vesicles	97.83
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.82
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.82
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.74
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.73
PRK10941	269	hypothetical protein; Provisional	97.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.72
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.71
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.71
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.65
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.63
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.61
PRK10941	269	hypothetical protein; Provisional	97.56
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.55
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.55
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.51
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.47
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.42
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.38
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.33
KOG3364	149	consensus Membrane protein involved in organellar	97.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.26
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.15
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.15
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.11
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.08
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.04
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.97
KOG1585	308	consensus Protein required for fusion of vesicles	96.9
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.89
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.88
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.83
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.78
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.75
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.74
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.69
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.59
COG2912	269	Uncharacterized conserved protein [Function unknow	96.53
KOG1258	577	consensus mRNA processing protein [RNA processing	96.51
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.46
KOG2471	696	consensus TPR repeat-containing protein [General f	96.44
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.38
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.27
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.05
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.02
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.0
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.98
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.94
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.93
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.9
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.86
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.78
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.75
COG2912	269	Uncharacterized conserved protein [Function unknow	95.74
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.71
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.7
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.64
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.63
KOG3364	149	consensus Membrane protein involved in organellar	95.61
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.61
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.6
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.59
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.5
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.5
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.48
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.4
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.33
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.31
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.24
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.2
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.17
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.11
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.1
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.89
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.88
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.61
KOG1310	758	consensus WD40 repeat protein [General function pr	94.58
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.58
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.58
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.54
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.42
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.22
COG4455	273	ImpE Protein of avirulence locus involved in tempe	94.2
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.13
COG3947	361	Response regulator containing CheY-like receiver a	94.09
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.98
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.85
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.76
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.62
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.3
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.25
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.99
COG3947	361	Response regulator containing CheY-like receiver a	92.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.75
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.7
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.62
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.54
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.33
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.19
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.15
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.98
KOG1258	577	consensus mRNA processing protein [RNA processing	91.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.9
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	91.6
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.53
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.23
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.06
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.94
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.36
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.31
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.23
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	90.23
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.13
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.87
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.46
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.29
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.45
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.36
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.84
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.43
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.41
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	87.1
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.74
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	86.68
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.47
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.16
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.22
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.95
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	84.94
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	84.76
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.83
KOG3783	546	consensus Uncharacterized conserved protein [Funct	83.78
PF12854	34	PPR_1: PPR repeat	83.54
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.9
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.67
PF12854	34	PPR_1: PPR repeat	82.47
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	82.45
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.3
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.35
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	80.73
smart00299	140	CLH Clathrin heavy chain repeat homology.	80.47
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	80.19
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	80.14

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-28  Score=202.63  Aligned_cols=250  Identities=15%  Similarity=0.196  Sum_probs=159.1

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.-+-+|.++|-++..+|+...||..|.+|++++|...++|+++|.+|..++.++.|+.+|.+|+.+.|+++.++.++|
T Consensus       214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla  293 (966)
T KOG4626|consen  214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLA  293 (966)
T ss_pred             CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceE
Confidence            34444455555555555566666666666666666655566666666665555555555555555555555555555555


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhh-----hhhHH----------------Hh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI-----RSNVD----------------MV  141 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~----------------~~  141 (268)
                      .+|+.+|..+.||.+|++++++.|+.++++.+++..+...|+..+|......     ....+                ..
T Consensus       294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence            5555555555555555555555555555555555555555555555433210     00000                00


Q ss_pred             hhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          142 QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                      ..+-....++.+.+..+....+.++..++.+++|+.+|..++.+.|.          .|-.+|+...|++.|.+++.++|
T Consensus       374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            11111222344456666677788888899999999999999999997          46788899999999999999999


Q ss_pred             cccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccccc
Q 024419          212 AFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVY  253 (268)
Q Consensus       212 ~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~  253 (268)
                      .+...+. ++..+.--|..  |+..|+.|+ +++|+...+|-+..
T Consensus       454 t~AeAhsNLasi~kDsGni~~AI~sY~~aL-klkPDfpdA~cNll  497 (966)
T KOG4626|consen  454 TFAEAHSNLASIYKDSGNIPEAIQSYRTAL-KLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHHHhhHHHHhhccCCcHHHHHHHHHHH-ccCCCCchhhhHHH
Confidence            8744433 56666666655  999999999 99999988886643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.95  E-value=4.4e-28  Score=202.09  Aligned_cols=258  Identities=16%  Similarity=0.189  Sum_probs=209.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|+..-+....|+.+-..|+.++|..+|.+|+..+|..+.+|.++|.++...|+...|+..|++|++++|.+.++|++||
T Consensus       180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG  259 (966)
T KOG4626|consen  180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG  259 (966)
T ss_pred             CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence            57777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHH-----------------
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD-----------------  145 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------  145 (268)
                      .+|...+.|+.|+.+|.+++.+.|++..++-+++-+|..+|..+-|+...+  ..++..+.+.                 
T Consensus       260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk--ral~~~P~F~~Ay~NlanALkd~G~V~  337 (966)
T KOG4626|consen  260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK--RALELQPNFPDAYNNLANALKDKGSVT  337 (966)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH--HHHhcCCCchHHHhHHHHHHHhccchH
Confidence            999999999999999999999999999999999888888888887765432  2222211111                 


Q ss_pred             ----HHHH--HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC
Q 024419          146 ----EFKS--EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       146 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~  209 (268)
                          .+..  .+.....+.....+.++..++.+++|...|.+++++.|.          +|...|++++|+..|+.++.+
T Consensus       338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence                1111  122234444566677777889999999999999999987          578889999999999999999


Q ss_pred             CccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc---cccccccccchh
Q 024419          210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ---VYKPICLERSRI  263 (268)
Q Consensus       210 ~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~---~~~~~~~~~~~~  263 (268)
                      .|.+..... .|..|...|+-  |+..|.+|| .++|.-..+..+   +++.-|..-..|
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QINPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence            998744333 77888888866  999999999 999976655444   344444433333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=5.4e-24  Score=189.69  Aligned_cols=231  Identities=14%  Similarity=0.109  Sum_probs=199.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+.++..+|.+++..|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++..+|+++.+++.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .++...|++++|+..|+++++++|++..++..+|.++...|++++|.....  ..+.           ..+.....+...
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~-----------~~P~~~~~~~~l  473 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKK-----------NFPEAPDVYNYY  473 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------hCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999976632  1111           222333445566


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHH
Q 024419          163 HVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQ  224 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~  224 (268)
                      +.+....+++++|+..|.+++.+.|.                 .+...|++.+|...+++++.++|...... ..+.++.
T Consensus       474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~  553 (615)
T TIGR00990       474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL  553 (615)
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            77788889999999999999998874                 12236899999999999999988664322 2688888


Q ss_pred             HHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          225 FLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       225 ~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ..|++  |...|++|+ ++.+....
T Consensus       554 ~~g~~~eAi~~~e~A~-~l~~~~~e  577 (615)
T TIGR00990       554 QQGDVDEALKLFERAA-ELARTEGE  577 (615)
T ss_pred             HccCHHHHHHHHHHHH-HHhccHHH
Confidence            88888  999999999 98886433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=2.3e-22  Score=179.35  Aligned_cols=100  Identities=29%  Similarity=0.506  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +..+..+|+.++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..+.++++++|++..+++.+|.+|.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            567889999999999999999999999999996 7799999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCC
Q 024419           87 AMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      .+|++++|+..|..++.+++.
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~  226 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGF  226 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            999999999888777665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.3e-23  Score=173.67  Aligned_cols=227  Identities=18%  Similarity=0.233  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------cCCCChHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------------------------QDPSNPTLFSNRAAAFL   52 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------------------------~~p~~~~~~~~~a~~~~   52 (268)
                      ...+.++|..||..++|++|..+|+.+-.                                  .+|+++..|+.+|.||-
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS  432 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS  432 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence            35778999999999999999999998844                                  36777899999999999


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           53 HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        53 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      -+++++.|+++|++|+++||++..+|..+|.=+....++|.|..+|+++|..+|.+..+|+++|.+|.++++++.|+-..
T Consensus       433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f  512 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF  512 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996552


Q ss_pred             hhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhh
Q 024419          133 NIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEK  202 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~  202 (268)
                        ..++.           +.+......+..|.++...++.++|+..+++|+.++|.          +++.++++.+|+..
T Consensus       513 --qkA~~-----------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~  579 (638)
T KOG1126|consen  513 --QKAVE-----------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE  579 (638)
T ss_pred             --Hhhhc-----------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence              12222           23333445577788888899999999999999999986          68899999999999


Q ss_pred             hhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          203 YAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       203 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ++.+..+-|+... ....|..+..+|+.  |+..|.-|. .+||+...
T Consensus       580 LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~-~ldpkg~~  626 (638)
T KOG1126|consen  580 LEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL-DLDPKGAQ  626 (638)
T ss_pred             HHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh-cCCCccch
Confidence            9999999775422 23377888888855  999999999 99998654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2e-21  Score=158.39  Aligned_cols=255  Identities=20%  Similarity=0.317  Sum_probs=182.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+..+..+|+.++.+|+|++||.+|..||.++|+.+..|.+++.||...|+|++-++...++++++|+...++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHH------------------HHHhh--------------C---CC----------------------
Q 024419           85 LEAMEQYDDALSAFQ------------------TALQY--------------N---PQ----------------------  107 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~------------------~~l~~--------------~---p~----------------------  107 (268)
                      +..+|++.+|+....                  +.|..              .   |.                      
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            999999988875221                  11111              0   00                      


Q ss_pred             -C---H------------------------------------------------HHHHHHHHHH-------HHHHHHHHh
Q 024419          108 -S---A------------------------------------------------EVSRKIKRVS-------QLAKDKKRA  128 (268)
Q Consensus       108 -~---~------------------------------------------------~~~~~l~~~~-------~~~~~~~~a  128 (268)
                       +   .                                                .++...|..+       ..+.+++.+
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence             0   0                                                0000000000       011122222


Q ss_pred             HHHHhhh-h-hHHHh----------hhHHHH--HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------
Q 024419          129 QEVENIR-S-NVDMV----------QHLDEF--KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------  188 (268)
Q Consensus       129 ~~~~~~~-~-~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------  188 (268)
                      +.+.... + .+...          .....+  ...+.+...+++..+|.+.+.++++++|+..|.+++.++|.      
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            2221100 0 01000          000111  12345567788899999999999999999999999999998      


Q ss_pred             ----HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCC------Ccccccccccc
Q 024419          189 ----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPK------SIISYPQVYKP  255 (268)
Q Consensus       189 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~------~~~~~~~~~~~  255 (268)
                          ..+..+++..+...|+.++...|.....+. .+.++.-.++|  |.+.|++|+ .+.|.      |+.++  |.++
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai-~LE~~~~~~~v~~~pl--V~Ka  509 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI-ELEPREHLIIVNAAPL--VHKA  509 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH-hhccccccccccchhh--hhhh
Confidence                345667889999999999988776543333 78888888899  999999999 99999      54433  3455


Q ss_pred             cccccch
Q 024419          256 ICLERSR  262 (268)
Q Consensus       256 ~~~~~~~  262 (268)
                      .-..||+
T Consensus       510 ~l~~qwk  516 (606)
T KOG0547|consen  510 LLVLQWK  516 (606)
T ss_pred             Hhhhchh
Confidence            5455555

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.1e-21  Score=155.63  Aligned_cols=222  Identities=18%  Similarity=0.205  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ++++..+|..++..|++..|-+.++.+|+++|.....|..+|.+|...++.++....|.+|..+||.++++|+.+|.+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (268)
                      -+++|++|+..|+++++++|++..++.+++-+...++.++++.....  ..           ..-.+....++...+.+.
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe--e~-----------kkkFP~~~Evy~~fAeiL  472 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE--EA-----------KKKFPNCPEVYNLFAEIL  472 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------HHhCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999998888765521  11           112334445555666678


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHH
Q 024419          167 FVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ  228 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  228 (268)
                      ..++++++|++.|.+++.+.|+                 +....+++..|++.++++++++|....... +++.....++
T Consensus       473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999987                 244668999999999999999986533332 5666666666


Q ss_pred             H--HHHHHHHHhhhhC
Q 024419          229 Y--ADDSFSSAACLVA  242 (268)
Q Consensus       229 ~--a~~~~~ka~~~~~  242 (268)
                      .  |++.|++++ .+.
T Consensus       553 i~eAielFEksa-~lA  567 (606)
T KOG0547|consen  553 IDEAIELFEKSA-QLA  567 (606)
T ss_pred             HHHHHHHHHHHH-HHH
Confidence            6  999999998 554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.8e-22  Score=168.04  Aligned_cols=196  Identities=16%  Similarity=0.197  Sum_probs=176.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+++|...|+++-.+++++.||++|++|+++||..+.+|..+|.-+....+++.|..+|++||..+|++..+|+.+|
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc--hhh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA--EEC  160 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  160 (268)
                      .+|.++++++.|.-.|++|++++|.+..+...+|.++...|..++|..+.               ..++..+..+  ..+
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~---------------~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY---------------EKAIHLDPKNPLCKY  561 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH---------------HHHHhcCCCCchhHH
Confidence            99999999999999999999999999999999999999999999997763               2223333333  345


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          161 WKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       161 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      .++.+.+..+++++|+..++..-++.|+          +|..+|+...|+..|.-|.+++|.-
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            6677888899999999999998888886          5778888899999999999998854

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=2.2e-20  Score=166.74  Aligned_cols=242  Identities=10%  Similarity=0.004  Sum_probs=167.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.+++++..+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.++..+|
T Consensus        72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la  151 (656)
T PRK15174         72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL  151 (656)
T ss_pred             CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            57788888999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH---HHh-----------------h
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV---DMV-----------------Q  142 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-----------------~  142 (268)
                      .++...|++++|+..+++++..+|+++.++..++. +...|++++|..........   ...                 .
T Consensus       152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e  230 (656)
T PRK15174        152 RTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE  230 (656)
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence            99999999999999999998999988888776643 56678888886653210000   000                 0


Q ss_pred             hHHHHHHHh--hhhcCchhhhHHHHHHHHHHHHH----HHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHH
Q 024419          143 HLDEFKSEM--SEKYGAEECWKHVFSFVVETMET----AVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPI  206 (268)
Q Consensus       143 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~  206 (268)
                      .+..+...+  .+.........+..+...+++++    |+..|++++.++|.          ++...|++++|+..++++
T Consensus       231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            000000001  11111222333444445556553    67777777777665          345566777777777777


Q ss_pred             hcCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          207 VNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       207 ~~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      +.++|...... .++.++...|++  |...|++++ ..+|++.
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al-~~~P~~~  352 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA-REKGVTS  352 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCccch
Confidence            77766542211 145555566666  777777777 7777653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=1.2e-19  Score=162.15  Aligned_cols=230  Identities=12%  Similarity=0.059  Sum_probs=170.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK-   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-   81 (268)
                      .|.++.++..+|..+...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++..+|+++.++..+ 
T Consensus       106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~  185 (656)
T PRK15174        106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL  185 (656)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5888999999999999999999999999999999999999999999999999999999999999999998887776554 


Q ss_pred             ---------------------------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           82 ---------------------------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        82 ---------------------------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                                                       +.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence                                             23334444555555555555555555555555555555555544432


Q ss_pred             ----HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhh
Q 024419          129 ----QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD  194 (268)
Q Consensus       129 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~  194 (268)
                          ....  ..           ...+.+.........+.+....+++++|+..+++++.++|.          ++...|
T Consensus       266 ~~~A~~~~--~~-----------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G  332 (656)
T PRK15174        266 KLQAAEHW--RH-----------ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG  332 (656)
T ss_pred             HHHHHHHH--HH-----------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence                1110  00           01122233344556667777889999999999999999887          566889


Q ss_pred             hhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          195 KEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       195 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      ++++|+..|+.++..+|....... .+.++...|++  |...|++++ +.+|++.
T Consensus       333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al-~~~P~~~  386 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI-QARASHL  386 (656)
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhChhhc
Confidence            999999999999999886532222 35567777777  999999999 9999875

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=4.3e-19  Score=144.19  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=112.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      ++..+..++.+|..+...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .++...|++++|++.|+++++++|+++.....+ .+....++.++|...
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~  187 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKEN  187 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHH
Confidence            999999999999999999999999998422111 222334556666554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.85  E-value=2.9e-19  Score=140.34  Aligned_cols=246  Identities=17%  Similarity=0.259  Sum_probs=174.6

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|.+++-.+.+|..++..|++.+|+..|..|++.||++..+++.+|.+|+.+|+-.-|+..+.++|++.|++.-+..+.
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhHHHH---hhhhhHHHhh----------hHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE---NIRSNVDMVQ----------HLD  145 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~----------~~~  145 (268)
                      |.++.++|+++.|...|..+|..+|++.   ++...++.+........+.....   .....+....          .+.
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            9999999999999999999999999664   34444443332222222221111   0000010000          001


Q ss_pred             HHHHH--------------------hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------
Q 024419          146 EFKSE--------------------MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------  188 (268)
Q Consensus       146 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------  188 (268)
                      ..+..                    +..+.....+....+.+-.++.+.++...+..++++|+                 
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            11111                    11122222233333444566777777777777777765                 


Q ss_pred             -------------------------------------------HHHHhhhhhhhHhhhhHHhcCCccccC-ccchhHHHH
Q 024419          189 -------------------------------------------VYFLLDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQ  224 (268)
Q Consensus       189 -------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~  224 (268)
                                                                 ++..-+++.+|++.+..+++++|+.+. ....+.+|.
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence                                                       234556777888888888888776421 122556666


Q ss_pred             HHHHH--HHHHHHHHhhhhCCCCccc
Q 024419          225 FLRQY--ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       225 ~~~~~--a~~~~~ka~~~~~p~~~~~  248 (268)
                      .-.+|  |+.+|++|. +++|+|..+
T Consensus       353 ~dE~YD~AI~dye~A~-e~n~sn~~~  377 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKAL-ELNESNTRA  377 (504)
T ss_pred             hhHHHHHHHHHHHHHH-hcCcccHHH
Confidence            66688  999999999 999998643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=143.69  Aligned_cols=122  Identities=34%  Similarity=0.578  Sum_probs=116.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..++.+...|+.++..++|++|+..|.+||+++|+++..|+++|.+|.++|+++.|++.++.+|.+||.+.++|.+||.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~  126 (268)
                      |..+|++++|++.|+++|+++|+|...+..|..+...+++..
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999988877776555

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=7.4e-19  Score=166.46  Aligned_cols=87  Identities=8%  Similarity=-0.007  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHH
Q 024419          159 ECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLR  227 (268)
Q Consensus       159 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  227 (268)
                      ....+..+...+++++|+..|++++..+|.          ++...|+..+|+..++.++...|....... .+.++...+
T Consensus       606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g  685 (1157)
T PRK11447        606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG  685 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence            344555667789999999999999998886          567889999999999999888775432222 566677777


Q ss_pred             HH--HHHHHHHHhhhhCCCCc
Q 024419          228 QY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       228 ~~--a~~~~~ka~~~~~p~~~  246 (268)
                      ++  |...|++++ ...|++.
T Consensus       686 ~~~eA~~~~~~al-~~~~~~~  705 (1157)
T PRK11447        686 DTAAAQRTFNRLI-PQAKSQP  705 (1157)
T ss_pred             CHHHHHHHHHHHh-hhCccCC
Confidence            77  999999999 8877654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.83  E-value=4.6e-19  Score=164.19  Aligned_cols=226  Identities=15%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      +...+..++..+...|++++|+..+++++...|.+..+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++
T Consensus       566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  645 (899)
T TIGR02917       566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY  645 (899)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (268)
                      ...|++++|+..|+++++.+|++..++..++.++...|++++|..+......             ..+.........+..
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~~  712 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-------------QHPKAALGFELEGDL  712 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------hCcCChHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555443211000             000011112223333


Q ss_pred             HHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHH
Q 024419          166 SFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDS  233 (268)
Q Consensus       166 ~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~  233 (268)
                      ....+++++|+..|.+++...|.         ++...|+..+|.+.++.++...|....... .+.++...|++  |...
T Consensus       713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~  792 (899)
T TIGR02917       713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH  792 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence            44455555555555555554443         233445555555555555554443211111 33333334444  5555


Q ss_pred             HHHHhhhhCCCC
Q 024419          234 FSSAACLVAPKS  245 (268)
Q Consensus       234 ~~ka~~~~~p~~  245 (268)
                      |++++ ..+|++
T Consensus       793 ~~~~~-~~~p~~  803 (899)
T TIGR02917       793 YRTVV-KKAPDN  803 (899)
T ss_pred             HHHHH-HhCCCC
Confidence            55555 555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.83  E-value=1.3e-18  Score=161.29  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=182.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  200 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG  200 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-HHh------------------hh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-DMV------------------QH  143 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~  143 (268)
                      .++...|++++|+..|++++..+|+++.++..++.++...|++++|.......... ...                  ..
T Consensus       201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  280 (899)
T TIGR02917       201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA  280 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999999999999999987653211000 000                  00


Q ss_pred             HHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          144 LDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                      +..+...  ..+.........+......+++++|+..+.+++...|.          ++...|+..+|...+..++...|
T Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  360 (899)
T TIGR02917       281 RETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP  360 (899)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            0000000  01111122233344555566777777777777666554          34566777777777777776655


Q ss_pred             cccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419          212 AFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       212 ~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~  248 (268)
                      .... ....+.++...+++  |.+.|++++ .++|++...
T Consensus       361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~  399 (899)
T TIGR02917       361 DDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELDPENAAA  399 (899)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCHHH
Confidence            4311 11245556666666  888899998 888887543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.82  E-value=9.8e-19  Score=126.75  Aligned_cols=117  Identities=17%  Similarity=0.208  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +..+..+|..+...|++++|+..|++++..+|.+..+|+++|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            33477889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      ..|++++|+..|+++++++|+++..+...+.+....+
T Consensus       104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888866543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.82  E-value=1.5e-18  Score=164.30  Aligned_cols=201  Identities=13%  Similarity=0.079  Sum_probs=107.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--------------H
Q 024419           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK--------------G   77 (268)
Q Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~   77 (268)
                      .+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            34555556666666666666666666666666666666666666666666666666666555421              1


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHhhhHHHHHHH--
Q 024419           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMVQHLDEFKSE--  150 (268)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~--  150 (268)
                      ...+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.........     .....+..+...  
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            1233555555566666666666666666655555555566555555555554432210000     000000000000  


Q ss_pred             ----------------------hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhh
Q 024419          151 ----------------------MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT  198 (268)
Q Consensus       151 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~  198 (268)
                                            ............+......+++++|+..|++++.++|+          +|...|+.++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                  00000011222334455567778888888888877775          4666777778


Q ss_pred             hHhhhhHHhcCCcc
Q 024419          199 DTEKYAPIVNVDKA  212 (268)
Q Consensus       199 a~~~~~~~~~~~~~  212 (268)
                      |+..+++++..+|.
T Consensus       514 A~~~l~~al~~~P~  527 (1157)
T PRK11447        514 ADALMRRLAQQKPN  527 (1157)
T ss_pred             HHHHHHHHHHcCCC
Confidence            88777777776554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=4e-18  Score=144.33  Aligned_cols=240  Identities=13%  Similarity=0.034  Sum_probs=178.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG   82 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la   82 (268)
                      ....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..    ..++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            34556778888999999999999999999999999999999999999999999999999988854322    35688899


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH-------h--------------
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM-------V--------------  141 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~--------------  141 (268)
                      .++...|++++|+..|+++++.+|.+..++..++.++...|++++|.+..........       .              
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999988765332111000       0              


Q ss_pred             ---hhHHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhH
Q 024419          142 ---QHLDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAP  205 (268)
Q Consensus       142 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~  205 (268)
                         .....+...  ..+.........+.++...+++++|+..+++++..+|.           +|...|+.++|...+++
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               000000100  11112223344455566688889999999998877664           45577899999999999


Q ss_pred             HhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          206 IVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ++...|........+..+...+++  |...|++++ ..+|++..
T Consensus       275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~  317 (389)
T PRK11788        275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQL-RRHPSLRG  317 (389)
T ss_pred             HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHH
Confidence            988877653333356666666667  999999999 88998753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.8e-18  Score=139.42  Aligned_cols=165  Identities=14%  Similarity=0.160  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      +...-+|+-|...++.++|+.+|++|++++|+...+|..+|.-|+.+.+...|++.|++|++++|.+..+|+.+|++|.-
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            44556788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF  167 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (268)
                      ++.+.=|+-+|+++++.-|+++..|..||++|..+++.++|+....      .       .......-+..+...+.++.
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------r-------ai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------R-------AILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------H-------HHhccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987742      1       11112223455666677777


Q ss_pred             HHHHHHHHHHhhhhhhhc
Q 024419          168 VVETMETAVKSWHETSKV  185 (268)
Q Consensus       168 ~~~~~~~A~~~~~~~~~~  185 (268)
                      ..++.++|...|++.++.
T Consensus       478 ~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  478 ELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHhHHHHHHHHHHHHHH
Confidence            788888888888887763

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=1.1e-17  Score=147.08  Aligned_cols=230  Identities=14%  Similarity=0.061  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhhCCCCHH
Q 024419            9 SLKDKGNEFFKA---GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNPQWEK   76 (268)
Q Consensus         9 ~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~p~~~~   76 (268)
                      .++.+|...+..   +++++|+..|+++++.+|+++.+|..+|.|+...+         ++++|+..++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            456667655443   45789999999999999999999999999887543         478999999999999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcC
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG  156 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (268)
                      ++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|.....  ..+...+           ...
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~--~Al~l~P-----------~~~  406 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN--ECLKLDP-----------TRA  406 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHhcCC-----------CCh
Confidence            999999999999999999999999999999999999999999999999999976531  1111111           111


Q ss_pred             chhhhHHHHHHHHHHHHHHHHhhhhhhhch-hH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHH
Q 024419          157 AEECWKHVFSFVVETMETAVKSWHETSKVD-AK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQ  224 (268)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~  224 (268)
                      ..........+..+++++|+..+.+++... |.          ++..+|+.++|...+.++....|....... .+..+.
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            111222333455688889999888887653 32          345678889999988887666554211111 222333


Q ss_pred             HHHHH---HHHHHHHHhhhhCCCCccccccc
Q 024419          225 FLRQY---ADDSFSSAACLVAPKSIISYPQV  252 (268)
Q Consensus       225 ~~~~~---a~~~~~ka~~~~~p~~~~~~~~~  252 (268)
                      ..+.-   .+..+.++. ...|.+....+.+
T Consensus       487 ~~g~~a~~~l~~ll~~~-~~~~~~~~~~~~~  516 (553)
T PRK12370        487 QNSERALPTIREFLESE-QRIDNNPGLLPLV  516 (553)
T ss_pred             ccHHHHHHHHHHHHHHh-hHhhcCchHHHHH
Confidence            33322   244444555 4555554444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=9.6e-18  Score=138.64  Aligned_cols=112  Identities=38%  Similarity=0.672  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      .-....|+..+..|+|+.|+.+|..++.++|.+...+.++..||..+|+|++|++.-.+.++++|+++.+|.++|..+..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      +|+|++|+..|.+.|+.+|+|.....++.+++
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999988888876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=4.1e-17  Score=127.67  Aligned_cols=168  Identities=15%  Similarity=0.157  Sum_probs=135.4

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+..+..+|..++..|++++|+..++++++.+|++..++..+|.++..+|++++|+..+++++..+|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            44778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           85 LEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      +...|++++|+..+++++...  |.....+..++.++...|++++|......  .+..           .+.........
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~-----------~~~~~~~~~~l  175 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR--ALQI-----------DPQRPESLLEL  175 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh-----------CcCChHHHHHH
Confidence            999999999999999999854  56677888999999999999988765311  1111           11111223334


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhc
Q 024419          163 HVFSFVVETMETAVKSWHETSKV  185 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~  185 (268)
                      +.+....+++++|+..+++++..
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            44455566666666666655544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=6e-18  Score=140.94  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   89 (268)
                      -+..|..++++|+..+|+-.|+.|++.+|.+.++|..+|.+....++-..||..+++|++++|+|..++..||.+|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhHHHHhhhhhHHHhhhHHHHHHHhh-----hhcCchhhh
Q 024419           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQEVENIRSNVDMVQHLDEFKSEMS-----EKYGAEECW  161 (268)
Q Consensus        90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  161 (268)
                      .-.+|..++.+-+...|.....-.  +......   +.+...          .....+..+..+..     ....++...
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~~s~~~~----------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~  435 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVS--AGENEDFENTKSFLDS----------SHLAHIQELFLEAARQLPTKIDPDVQSG  435 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccc--cCccccccCCcCCCCH----------HHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence            999999999999998875422111  0000000   000000          00000111111111     123456788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhHH---HH-------HhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH-
Q 024419          162 KHVFSFVVETMETAVKSWHETSKVDAKV---YF-------LLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY-  229 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  229 (268)
                      +|+++...+.|++|+.+|+.++...|.-   +.       .-.+..+|+..|.+|+.+.|.++..+. +|.++..+|.| 
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence            8999999999999999999999999982   22       334788999999999999999987665 89999999999 


Q ss_pred             -HHHHHHHHhhhhCCC
Q 024419          230 -ADDSFSSAACLVAPK  244 (268)
Q Consensus       230 -a~~~~~ka~~~~~p~  244 (268)
                       |.+.|-.|| .+.++
T Consensus       516 EA~~hlL~AL-~mq~k  530 (579)
T KOG1125|consen  516 EAVKHLLEAL-SMQRK  530 (579)
T ss_pred             HHHHHHHHHH-Hhhhc
Confidence             999999999 99887

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=7.1e-18  Score=137.07  Aligned_cols=211  Identities=14%  Similarity=0.060  Sum_probs=151.3

Q ss_pred             cCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDP----SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      .+..+.++..+.+++...|    ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4567889999999996433    347889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH-HHHHHHHHHHH
Q 024419           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH-VFSFVVETMET  174 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  174 (268)
                      ..|+++++++|++..++..+|.++...|++++|.....  ..+...+             ........ .+....+++++
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~--~al~~~P-------------~~~~~~~~~~l~~~~~~~~~  183 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL--AFYQDDP-------------NDPYRALWLYLAESKLDPKQ  183 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCC-------------CCHHHHHHHHHHHccCCHHH
Confidence            99999999999999999999999999999999976531  1111111             11110000 01223456788


Q ss_pred             HHHhhhhhhhc-hhH------HHHHhhhhhhhHhhhhHHh-------cCCcccc-CccchhHHHHHHHHH--HHHHHHHH
Q 024419          175 AVKSWHETSKV-DAK------VYFLLDKEKTDTEKYAPIV-------NVDKAFE-SPHTHGSCFQFLRQY--ADDSFSSA  237 (268)
Q Consensus       175 A~~~~~~~~~~-~~~------~~~~~~~~~~a~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~--a~~~~~ka  237 (268)
                      |+..+.+.... +|.      +...+|+...+ +.+..+.       .+.|... .....|..+...|++  |...|++|
T Consensus       184 A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        184 AKENLKQRYEKLDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             HHHHHHHHHhhCCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888665433 332      33456665443 2333332       2222111 112256666767777  99999999


Q ss_pred             hhhhCCCCcc
Q 024419          238 ACLVAPKSII  247 (268)
Q Consensus       238 ~~~~~p~~~~  247 (268)
                      + .++|.+..
T Consensus       263 l-~~~~~~~~  271 (296)
T PRK11189        263 L-ANNVYNFV  271 (296)
T ss_pred             H-HhCCchHH
Confidence            9 99986543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=3e-17  Score=138.97  Aligned_cols=205  Identities=14%  Similarity=0.046  Sum_probs=141.5

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKI  115 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l  115 (268)
                      .....+.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345667789999999999999999999999999999999999999999999999999999999854332    3578899


Q ss_pred             HHHHHHHHHHHHhHHHHhhhhh-----HHHhhhH--------------HHHHHHhhhhcCc-------hhhhHHHHHHHH
Q 024419          116 KRVSQLAKDKKRAQEVENIRSN-----VDMVQHL--------------DEFKSEMSEKYGA-------EECWKHVFSFVV  169 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~~~~~~~  169 (268)
                      +.++...|++++|.........     ......+              ..+...+......       .....+......
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            9999999999999765331111     0000000              0000000000000       111223334456


Q ss_pred             HHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccchhHHHHHHHHH--HHHHHH
Q 024419          170 ETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--ADDSFS  235 (268)
Q Consensus       170 ~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--a~~~~~  235 (268)
                      +++++|+..+.++++..|.          ++...|+.++|...+++++..+|....  ....+..+...+++  |...++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7888888888888877765          455778888888888888877664311  11234555555656  888888


Q ss_pred             HHhhhhCCCC
Q 024419          236 SAACLVAPKS  245 (268)
Q Consensus       236 ka~~~~~p~~  245 (268)
                      +++ ...|+.
T Consensus       274 ~~~-~~~p~~  282 (389)
T PRK11788        274 RAL-EEYPGA  282 (389)
T ss_pred             HHH-HhCCCc
Confidence            888 888865

>PRK12370 invasion protein regulator; Provisional

Probab=99.79  E-value=3e-17  Score=144.39  Aligned_cols=221  Identities=11%  Similarity=0.015  Sum_probs=163.0

Q ss_pred             chHhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419            3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   73 (268)
                      .|.++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  370 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI  370 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            477788888888876633         45899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      ++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|.....  ..+...          .+
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~--~~l~~~----------~p  438 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD--ELRSQH----------LQ  438 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH--HHHHhc----------cc
Confidence            999999999999999999999999999999999998877776766777888888866521  111000          01


Q ss_pred             hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc-cCccchhHH
Q 024419          154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF-ESPHTHGSC  222 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~  222 (268)
                      .........+.++...|++++|...+.+.....|.          .|...|  +.+...++.++...... ........+
T Consensus       439 ~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~  516 (553)
T PRK12370        439 DNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV  516 (553)
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH
Confidence            11222344566666789999999999988777765          122223  46666666655542211 112224555


Q ss_pred             HHHHHHH--HHHHHHHHh
Q 024419          223 FQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       223 ~~~~~~~--a~~~~~ka~  238 (268)
                      +...|+-  +.-. +++.
T Consensus       517 ~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        517 LVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             HHHHhhhHHHHHH-HHhh
Confidence            5555533  4444 6665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=9.9e-17  Score=147.34  Aligned_cols=216  Identities=10%  Similarity=-0.057  Sum_probs=93.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~   93 (268)
                      |..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+..|++++..+|++...+..++......|++++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e  594 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL  594 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence            333344444444444444443333322 2234444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHH
Q 024419           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME  173 (268)
Q Consensus        94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (268)
                      |+..|+++++++|+ +.++..++.++...|++++|+....  .           ...+.+.........+.+....++++
T Consensus       595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~--~-----------AL~l~Pd~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR--A-----------ALELEPNNSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH--H-----------HHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            44444444444443 4444444444444444444433310  0           00111112222333333344445555


Q ss_pred             HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhh
Q 024419          174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACL  240 (268)
Q Consensus       174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~  240 (268)
                      +|+..+.+++.++|.          ++..+|+++.|+..+++++.++|..... ...|........+  +.+.+.++. .
T Consensus       661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~-~  739 (987)
T PRK09782        661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW-T  739 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh-h
Confidence            555555555555543          3444455555555555555555443111 1133333333333  445555555 5


Q ss_pred             hCCCC
Q 024419          241 VAPKS  245 (268)
Q Consensus       241 ~~p~~  245 (268)
                      ++|+.
T Consensus       740 ~~~~~  744 (987)
T PRK09782        740 FSFDS  744 (987)
T ss_pred             cCccc
Confidence            55544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.77  E-value=7.7e-17  Score=146.82  Aligned_cols=241  Identities=10%  Similarity=0.088  Sum_probs=182.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++. +..+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-------HHH---------------
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-------VDM---------------  140 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~---------------  140 (268)
                      .++...|++++|+..++++++.+|+++.++..++.++...+..+.|.........       +..               
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            9999999999999999999999999999999999998877777766644321000       000               


Q ss_pred             ---------hhhHHHHHHHhhh--hcCch--hhh------HHHHHHHHHHHHHHHHhhhhhhhch---hH--------HH
Q 024419          141 ---------VQHLDEFKSEMSE--KYGAE--ECW------KHVFSFVVETMETAVKSWHETSKVD---AK--------VY  190 (268)
Q Consensus       141 ---------~~~~~~~~~~~~~--~~~~~--~~~------~~~~~~~~~~~~~A~~~~~~~~~~~---~~--------~~  190 (268)
                               ...+..+...+..  .....  ...      .+. ....+++++|+..|++.+...   |.        +|
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y  282 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY  282 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence                     0001111110100  00000  111      122 345688999999999988774   43        57


Q ss_pred             HHhhhhhhhHhhhhHHhcCCccccCc--cch---hHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          191 FLLDKEKTDTEKYAPIVNVDKAFESP--HTH---GSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       191 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      ..+|+.++|+..|++++..+|.....  ...   ...+...+++  |...++++. ...|...
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~-~~~P~~~  344 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI-NNSPPFL  344 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh-hcCCceE
Confidence            78999999999999999877654111  112   2233444566  899999999 8888653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=4.6e-17  Score=149.48  Aligned_cols=204  Identities=13%  Similarity=0.014  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...++..|..+...|++++|+.+|+++++.+|.+...+..++.....+|++++|+..|++++.++|+ +.++..+|.++.
T Consensus       542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~  620 (987)
T PRK09782        542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR  620 (987)
T ss_pred             cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence            3457788999999999999999999999999999888888888888889999999999999999996 999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (268)
                      +.|++++|+..|++++.++|+++.++..+|.++...|++++|+....  .           ...+.+.........+...
T Consensus       621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~--~-----------AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE--R-----------AHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--H-----------HHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999976531  1           1123344455567778888


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHH
Q 024419          167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQ  224 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  224 (268)
                      ...+++++|+..+++++.+.|+          +.....++..+.+.|.+...+++....+...|..+.
T Consensus       688 ~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~  755 (987)
T PRK09782        688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMST  755 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhh
Confidence            8899999999999999999996          233445667777778888888776653333444333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1e-16  Score=133.22  Aligned_cols=205  Identities=15%  Similarity=0.132  Sum_probs=175.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      -|+.+-.|+..|.-|+..|++.+|..+|.++..+||+.+.+|...|..+.-.|+.++|+.+|.+|-++-|....+.+.+|
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .=|..+++++.|.+.|.+++.+.|++|-++..+|-+....+.+.+|..+.....  ...+   ....+.. .........
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l--~~ik---~~~~e~~-~w~p~~~NL  461 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL--EVIK---SVLNEKI-FWEPTLNNL  461 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH--HHhh---hcccccc-chhHHHHhH
Confidence            999999999999999999999999999999999999999999999987643211  1100   0000000 112223455


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          163 HVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      |....-.+.+++|+..+.+++.+.|.          +|..+|+.+.|++.|.+++.++|..
T Consensus       462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            66677789999999999999999987          6889999999999999999999876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.1e-16  Score=127.72  Aligned_cols=177  Identities=13%  Similarity=0.139  Sum_probs=143.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|....+|..+|.-+...++...|++.|++|++++|.+-++|+++|++|..++-..-|+-.|++|+...|.+...|..||
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG  439 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG  439 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .||.++++.++|+++|.+++.....+..++..||+++..+++.++|....  .+.++....    ..........+..++
T Consensus       440 ~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y--ek~v~~~~~----eg~~~~~t~ka~~fL  513 (559)
T KOG1155|consen  440 ECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY--EKYVEVSEL----EGEIDDETIKARLFL  513 (559)
T ss_pred             HHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHh----hcccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999986653  122222110    000111111222334


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhc
Q 024419          163 HVFSFVVETMETAVKSWHETSKV  185 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~  185 (268)
                      +....-.+++++|-.+....+.-
T Consensus       514 A~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  514 AEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHhhcchHHHHHHHHHHhcC
Confidence            44455566666666655554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.73  E-value=2.6e-16  Score=112.38  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=99.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      +...+.++..|..++..|++++|...|+-+...||.+...|+++|.|+..+|++.+|+..|.+++.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCC
Q 024419           84 ILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      |+...|+.+.|++.|+.++...-
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.73  E-value=3.8e-16  Score=112.36  Aligned_cols=116  Identities=21%  Similarity=0.275  Sum_probs=108.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|.+....+.+|..++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+++.+++.+|
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .++...|++++|+..|+++++++|++.........+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            999999999999999999999999987765444333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.73  E-value=3.7e-15  Score=129.96  Aligned_cols=127  Identities=26%  Similarity=0.294  Sum_probs=121.4

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .....++..|+.++..|++++|..++.++++++|.+..+|..+|.||.++|+.++|...+-.|-.++|.+.+.|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..++|++..|+-+|.++++.+|.+.......+.++...|+...|...
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~  263 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET  263 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence            99999999999999999999999999999999999999998887653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=6.7e-16  Score=128.52  Aligned_cols=242  Identities=16%  Similarity=0.204  Sum_probs=171.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .+.+.+..++..++...+|.+..+..+..++.+|-+...+...-.|+...|+..+=...-.+.+...|+.+-.|+..|.-
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            56778888999999999999999999999998887766554433377777777666666677777777777777777777


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh---------------------HHHhhh
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN---------------------VDMVQH  143 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~  143 (268)
                      |...|++.+|..+|.|+..+||....+|...|..+...++.++|.........                     +..+..
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            77777777777777777777777777777777777777777776543221000                     011111


Q ss_pred             HHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHH
Q 024419          144 LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPI  206 (268)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~  206 (268)
                      +-.....+.+...-+.-..|++.+-.+.+.+|..+|.+++..-+.                 ++..++.+.+|+..|+++
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            101111122222223445566777788999999999988732221                 577889999999999999


Q ss_pred             hcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          207 VNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       207 ~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      +.+.|.....+. .|-++..+|.+  |.+.|.||+ .++|+|+.
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n~~  524 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDNIF  524 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCccHH
Confidence            999887754444 78888889988  999999999 99999954

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.71  E-value=3.1e-15  Score=118.01  Aligned_cols=114  Identities=22%  Similarity=0.304  Sum_probs=102.7

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GY   78 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~   78 (268)
                      ..+..++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            4578899999999999999999999999999999876   68899999999999999999999999999998765   79


Q ss_pred             HHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           79 FRKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        79 ~~la~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      +.+|.++...        |++++|++.|++++..+|++..++..+..+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            9999999886        889999999999999999998776544333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.7e-15  Score=121.88  Aligned_cols=230  Identities=19%  Similarity=0.176  Sum_probs=181.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH----------------------------------HH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR----------------------------------AA   49 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------a~   49 (268)
                      |.+..-+..+|.+++..|++.+|+..|+++..+||.+....-..                                  |.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~  308 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ  308 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence            56777888999999999999999999999999999875443333                                  34


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      ..+...++..|+..-+|+|..+|++..+++..|.++.++|+.++|+-.|+.+..+.|...++|.+|-.+|...+.+.+|.
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            44455567799999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH--HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhh
Q 024419          130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEK  197 (268)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~  197 (268)
                      ...  ...+...+           .......-.|  +....-..-++|.+.+++++.+.|.          ....-|.++
T Consensus       389 ~~A--n~~~~~~~-----------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  389 ALA--NWTIRLFQ-----------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHH--HHHHHHhh-----------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence            542  11111111           1111111111  0111223457788889999999997          355679999


Q ss_pred             hhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          198 TDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       198 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      +++..+++.+...++...+..+|.++...+.+  |.+.|.+|+ .+||+|-.
T Consensus       456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~  506 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKR  506 (564)
T ss_pred             hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchH
Confidence            99999999999888766566688888888888  999999999 99999853

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.71  E-value=4e-15  Score=116.36  Aligned_cols=130  Identities=19%  Similarity=0.208  Sum_probs=121.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQWEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~   80 (268)
                      .|.++..+..+|..+...|++++|+..++++++.+|.+..++.++|.++...|++++|+..+++++...  |.....+..
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999999864  556788999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +|.++...|++++|...+.+++..+|+++.++..++.++...|++++|....
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL  192 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.70  E-value=4.8e-15  Score=110.86  Aligned_cols=126  Identities=19%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +.+...+|..|+..|++..|..-+++||+.||++..+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|.-+.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           87 AMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+|++++|...|++++..  .|..+..+.++|.|....|+.+.|.+..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence            999999999999999964  4566889999999999999999997764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=9.2e-16  Score=125.07  Aligned_cols=194  Identities=18%  Similarity=0.179  Sum_probs=167.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ++.++.+.|++.+.+|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+...+--+++.++++++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (268)
                      ..+.+...|++.+.++..+-|+++.++..|+.+|...|+..+|.....           ..+  ...+..-....|.+.+
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-----------dsy--ryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-----------DSY--RYFPCNIETIEWLAAY  635 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-----------hcc--cccCcchHHHHHHHHH
Confidence            999999999999999999999999999999999999999888865521           001  1222333445677777


Q ss_pred             HHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       166 ~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      +...+-.++++.+|+++.-+.|.          ++...|++.+|++.|+..-...|.
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            88888899999999999888886          566789999999988877665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.70  E-value=1e-15  Score=127.20  Aligned_cols=116  Identities=34%  Similarity=0.556  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+...|..++..|+|++|+..|++++..+|++..+++++|.++..+|++++|+..+++++.++|+++.+|+.+|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      |++++|+..|+++++++|+++.+...++.+...+..
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988776643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.9e-15  Score=132.73  Aligned_cols=236  Identities=14%  Similarity=0.137  Sum_probs=151.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.+.-+++.+|.+.+..|+|..|+.+|.+++.++|.. ++....+|.|+.++++.+.|+..|.++++++|.++.++..|
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL  239 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence            46777777888888888888888888888888887764 46777778888888888888888888888888888888777


Q ss_pred             HHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419           82 GCILEAMEQ---YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE  158 (268)
Q Consensus        82 a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (268)
                      |.+-....+   +..+...+.++...+|.||.++..|+.-+...+++..+..+..-.....   ..       ..-....
T Consensus       240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~-------~~~~aes  309 (1018)
T KOG2002|consen  240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---EN-------KSIKAES  309 (1018)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hh-------hHHHHHH
Confidence            777665543   5667788888888888888888888877777777777755521100000   00       0011222


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHH
Q 024419          159 ECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFL  226 (268)
Q Consensus       159 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~  226 (268)
                      .++.|..+..+|++++|-.+|-.+++.+|+           .|...|+.+.+...|+++....|..... ...|..|...
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            344555556666666666666666666654           3445566666666666666665544111 1144444444


Q ss_pred             H------HHHHHHHHHHhhhhCCCCcccc
Q 024419          227 R------QYADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       227 ~------~~a~~~~~ka~~~~~p~~~~~~  249 (268)
                      +      +-|.....+++ +..|.++.+|
T Consensus       390 ~~~~~~~d~a~~~l~K~~-~~~~~d~~a~  417 (1018)
T KOG2002|consen  390 AKKQEKRDKASNVLGKVL-EQTPVDSEAW  417 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHH-hcccccHHHH
Confidence            2      11666666666 6666665544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=6.2e-16  Score=128.08  Aligned_cols=122  Identities=42%  Similarity=0.687  Sum_probs=116.5

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|.-+......|+.++..|+|..|+..|.++|..+|+++.+|.++|.||.+++++..|+.+.+++++++|+++.+|++.
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK  432 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK  432 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            35666778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      |.++..+.+|++|+++|+++++++|++.++...+.++...+.
T Consensus       433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~  474 (539)
T KOG0548|consen  433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR  474 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.69  E-value=2.2e-15  Score=114.90  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=86.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-EAMEQ--YDDALS   96 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~   96 (268)
                      .++.++++..+++++..+|+++..|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|+.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566777777788888888888888888888888888888888888888888888887887777764 56566  477888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++++++.+|+++.++..+|..+...|++++|+...
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888888888887777777777776653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.68  E-value=5.7e-15  Score=129.75  Aligned_cols=243  Identities=13%  Similarity=0.152  Sum_probs=126.6

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYF   79 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~   79 (268)
                      |.++.++.-+++.++..|+|+.+......++.....   -++.++.+|.+|..+|+|++|..+|.++++.+|++ .-+++
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            445555555555555555555555555555554322   22345555555555555555555555555555555 45555


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH----HHHHhHHHHh-----hhhhHHHh---------
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK----DKKRAQEVEN-----IRSNVDMV---------  141 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~----~~~~a~~~~~-----~~~~~~~~---------  141 (268)
                      ++|..+...|+++.|+.+|+++++..|++.+....||.+|...+    ..+.|..+..     .....+..         
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555554432    1112211100     00000000         


Q ss_pred             ----hhHHHHHHHh-------hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc-----hhH---------------HH
Q 024419          142 ----QHLDEFKSEM-------SEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-----DAK---------------VY  190 (268)
Q Consensus       142 ----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---------------~~  190 (268)
                          ..+..+...+       ..-........+..++..|.+++|..+|..++..     +++               +.
T Consensus       427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence                0000000000       0011122344556677788888888888877654     111               23


Q ss_pred             HHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--HH-HHHHHHHHhhhhCCCCcc
Q 024419          191 FLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR--QY-ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-a~~~~~ka~~~~~p~~~~  247 (268)
                      ..++++..|.+.|..++...|.++..+..-.+.....  .+ |...+..++ ..|..|..
T Consensus       507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l-~~d~~np~  565 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL-NIDSSNPN  565 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH-hcccCCcH
Confidence            3556666777888888888888765554222333222  34 888999999 88887743

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.68  E-value=1.9e-14  Score=131.33  Aligned_cols=238  Identities=13%  Similarity=0.081  Sum_probs=174.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++.-......+....|++++|++.+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..+|.
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~   91 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL   91 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44555666777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH---HHHhhhhcCchhh
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF---KSEMSEKYGAEEC  160 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  160 (268)
                      ++...|++++|+..++++++.+|+++. +..++.++...|+.++|.....  ..+...+.....   ...+....+....
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~--~al~~~P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT--QALPRAPQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence            999999999999999999999999999 9999999999999999876532  111111111000   0111111111100


Q ss_pred             hHHH----------------------H--H-----HHHHHH---HHHHHhhhhhhhc---hhH--------------HHH
Q 024419          161 WKHV----------------------F--S-----FVVETM---ETAVKSWHETSKV---DAK--------------VYF  191 (268)
Q Consensus       161 ~~~~----------------------~--~-----~~~~~~---~~A~~~~~~~~~~---~~~--------------~~~  191 (268)
                      +...                      +  .     ...+++   ++|+..+++.+..   +|.              .+.
T Consensus       169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll  248 (765)
T PRK10049        169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL  248 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence            0000                      0  0     011223   6677777776644   221              134


Q ss_pred             HhhhhhhhHhhhhHHhcCCcc---ccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          192 LLDKEKTDTEKYAPIVNVDKA---FESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       192 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      ..|+.++|+..|++++...+.   ... ...+.++...+++  |+..|++++ ..+|.+.
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l-~~~p~~~  306 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELF-YHPETIA  306 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHh-hcCCCCC
Confidence            667899999999999887532   211 1146677777777  999999999 8888763

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.67  E-value=5.6e-15  Score=110.52  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=122.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~   80 (268)
                      -|+...++..++..|...|+.+.|-+.|++|++++|++++++.|.|.-++.+|++++|...|++|+..  -|.-+.++-+
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN  144 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN  144 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence            47788999999999999999999999999999999999999999999999999999999999999984  3445789999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +|.|..+.|+++.|.+.|+++|+++|+++.....++..+...|++..|..+.
T Consensus       145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999987663

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.67  E-value=1.7e-14  Score=122.24  Aligned_cols=259  Identities=15%  Similarity=0.109  Sum_probs=184.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|.+.+.++......+.+.+++.|...+.++....| ..++|+.-+.....+++.++|+..++.+++..|++...|..+|
T Consensus       614 ~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG  692 (913)
T KOG0495|consen  614 NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG  692 (913)
T ss_pred             CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence            455556666666666777777777777777766544 4467777788888899999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-hHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-NVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      .++.++++.+.|.+.|...++..|+++..|..|+.+....|+..+|..+..... .-.....+..-...+....|.....
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999998888877643111 1111112222222233445555555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhH--------------------------HHHHhhhhhhhHhhhhHHhcCCccccC
Q 024419          162 KHVFSFVVETMETAVKSWHETSKVDAK--------------------------VYFLLDKEKTDTEKYAPIVNVDKAFES  215 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~  215 (268)
                      ...+...++.+..+-..|..++.+.|.                          .++...++++|.+.|.+++.++|++  
T Consensus       773 ~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~--  850 (913)
T KOG0495|consen  773 ELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN--  850 (913)
T ss_pred             HHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--
Confidence            444455555555554555555555543                          4777788999999999999998877  


Q ss_pred             ccchhHHHHHHHHH-----HHHHHHHHhhhhCCCCcccccccccccccccchhhc
Q 024419          216 PHTHGSCFQFLRQY-----ADDSFSSAACLVAPKSIISYPQVYKPICLERSRITK  265 (268)
Q Consensus       216 ~~~~~~~~~~~~~~-----a~~~~~ka~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (268)
                      ++....+|.+--+.     -.+.|.+.. ..+|.+...|.-+-+.+-..+..+.+
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~-~~EP~hG~~W~avSK~i~n~~~t~~e  904 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCE-TAEPTHGELWQAVSKDIKNWRKTPEE  904 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCcHHHHHhhhHHhccCCHHH
Confidence            44444444333222     677888888 88999888888777777666654443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=4.2e-15  Score=124.18  Aligned_cols=173  Identities=16%  Similarity=0.117  Sum_probs=146.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------------   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------   70 (268)
                      .|.++++|..+|.+...+++=..||..++++++++|++..++..+|.+|...|.-.+|..++.+-|..            
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            69999999999999999999999999999999999999999999999999888877777766666544            


Q ss_pred             -----------------------------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           71 -----------------------------NP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        71 -----------------------------~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                                                   +|  .+++++..||.+|...|+|+.|+.+|+.+|..+|++...|..||..+
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                         34  46778888999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          120 QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ....+..+|+..+             .....+.+.+.++.+..|+-...+|.|.+|+++|-.++.+.+.
T Consensus       475 AN~~~s~EAIsAY-------------~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  475 ANGNRSEEAISAY-------------NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cCCcccHHHHHHH-------------HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            7777777775542             1223356677777888888888888888888888888887776

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=4.5e-15  Score=107.59  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419           27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        27 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      ...++++++++|++   +..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46899999999985   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419          107 QSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +++.++..+|.++...|++++|+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~  114 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREA  114 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=7.1e-15  Score=112.12  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=103.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF-LHLVK--LNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      .|.+++.|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|+..++++++.+|+++.+++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            5889999999999999999999999999999999999999999999985 67787  59999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      .+|.++...|++++|+..|+++++++|.+..-.
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            999999999999999999999999998876544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.2e-15  Score=122.62  Aligned_cols=237  Identities=21%  Similarity=0.269  Sum_probs=169.5

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..++....+|..++...+|.+|+..|..|++.+|+++..|.+++.+++..++|+.|.-..++.++++|.....+...+.|
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c  126 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC  126 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence            45777889999999999999999999999999999999999999999999999999999999999999887777777777


Q ss_pred             HHHccCHHHHH----------------------------------------------------HHHHHHHhhCCCCHHHH
Q 024419           85 LEAMEQYDDAL----------------------------------------------------SAFQTALQYNPQSAEVS  112 (268)
Q Consensus        85 ~~~~~~~~~A~----------------------------------------------------~~~~~~l~~~p~~~~~~  112 (268)
                      +..+++..+|.                                                    +.--..+++++.+.+++
T Consensus       127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al  206 (486)
T KOG0550|consen  127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL  206 (486)
T ss_pred             hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence            66666555544                                                    33333444444444444


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH-hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---
Q 024419          113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE-MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---  188 (268)
Q Consensus       113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---  188 (268)
                      ..-|.++....+.+.++....  +.+...+........ .....-......|.-.+-.|.+..|-+.|..++.++|.   
T Consensus       207 ~vrg~~~yy~~~~~ka~~hf~--qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~  284 (486)
T KOG0550|consen  207 YVRGLCLYYNDNADKAINHFQ--QALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK  284 (486)
T ss_pred             HhcccccccccchHHHHHHHh--hhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence            444444444443333332211  111111111000000 00001111233344566689999999999999999997   


Q ss_pred             -----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          189 -----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       189 -----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                                 +...+|+..+|+.++..++.+++.++.+.. .+.|+..++++  |.++|++|+ +...+
T Consensus       285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~-q~~~s  353 (486)
T KOG0550|consen  285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM-QLEKD  353 (486)
T ss_pred             hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc
Confidence                       344789999999999999999998876655 78999999999  999999999 87665

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.63  E-value=7.7e-14  Score=118.07  Aligned_cols=205  Identities=12%  Similarity=0.089  Sum_probs=149.6

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.+.+.+-.+|..+...|+-++|..+.+.++..|+.+...|+-+|.++....+|++|+++|+.|+.+.|+|...+..++.
T Consensus        38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl  117 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL  117 (700)
T ss_pred             CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            67788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhh-hhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      +..++++++.....-.+.+++.|.+...|..++..+...|++..|..+...- +.....+.-..+..      ......+
T Consensus       118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~------se~~Ly~  191 (700)
T KOG1156|consen  118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEH------SELLLYQ  191 (700)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH------HHHHHHH
Confidence            9999999999999999999999999999999999988888888887663211 11110000000000      0011111


Q ss_pred             HHHHHHHHHHHHHHHhhhhh----------hhchhHHHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419          163 HVFSFVVETMETAVKSWHET----------SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFE  214 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  214 (268)
                      .....-.+..++|+++..+.          ......++..+++.++|...|..++..+|+.+
T Consensus       192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~  253 (700)
T KOG1156|consen  192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL  253 (700)
T ss_pred             HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence            11122223344444443321          11112367889999999999999999999773

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.63  E-value=4.4e-14  Score=120.25  Aligned_cols=230  Identities=13%  Similarity=0.140  Sum_probs=166.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----   70 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   70 (268)
                      |.-..+...+|..|..+|+|+.|+..+++++..        .|.-......+|.+|..++++.+|+..|++|+.+     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            556677888999999999999999999999998        5555566667999999999999999999999986     


Q ss_pred             ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHH
Q 024419           71 ---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD  139 (268)
Q Consensus        71 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  139 (268)
                         +|..+.++.+||.+|...|+|++|..++++++++-        |.-...+..++.++...+.+++|..+...  ...
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~--al~  353 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK--ALK  353 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH--HHH
Confidence               55567889999999999999999999999999873        23355677888888888999999877431  111


Q ss_pred             HhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------------------HHHHhhhhhhhHh
Q 024419          140 MVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------------------VYFLLDKEKTDTE  201 (268)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~a~~  201 (268)
                      ...   .............+...+..+..+|++.+|.+.+++++.....                  .|...+++.+|..
T Consensus       354 i~~---~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  354 IYL---DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHH---hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            100   0000111123344556666777889999999999888877643                  3566778888888


Q ss_pred             hhhHHhcCCccccCcc-c-------hhHHHHHHHHH--HHHHHHHHh
Q 024419          202 KYAPIVNVDKAFESPH-T-------HGSCFQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       202 ~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~--a~~~~~ka~  238 (268)
                      .|..+..+.+...... .       ++..|..+|.|  |.+.-++++
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            8888888753332111 1       44455555555  444444444

>PLN02789 farnesyltranstransferase

Probab=99.63  E-value=4.9e-14  Score=114.79  Aligned_cols=118  Identities=16%  Similarity=0.138  Sum_probs=79.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY-   91 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-   91 (268)
                      -.++...+++++|+..+.++++++|.+..+|..+|.++..+| ++++++..+.++++.+|++..+|..++.++...|+. 
T Consensus        44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence            334455566677777777777777777777777777776666 456777777777777777777777777666666653 


Q ss_pred             -HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           92 -DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        92 -~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                       +++++.+.++++.+|+|..+|...+.+....+.++++.+.
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence             5566666677777777777777777777666666666443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.62  E-value=9.1e-14  Score=124.77  Aligned_cols=127  Identities=11%  Similarity=0.044  Sum_probs=114.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--------
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--------   74 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------   74 (268)
                      .|.+..++..++..+...+++++|++..+.+++..|+...+++.+|.++.+.+++..|...  +++..-+.+        
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            4778899999999999999999999999999999999999999999999999988776655  555554444        


Q ss_pred             -----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           75 -----------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        75 -----------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                                 ..+++.+|.||.++|+.++|...|+++++.+|+|+.++.++|..+... +.++|.++.
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence                       489999999999999999999999999999999999999999999988 999998764

>PLN02789 farnesyltranstransferase

Probab=99.62  E-value=1.9e-13  Score=111.41  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=113.6

Q ss_pred             chHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL--NKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      +|.+..++..+|.++...| ++++|+..++++++.+|++..+|.+++.++..+|+.  ++++.++.+++..+|+|..+|.
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence            6889999999999999998 689999999999999999999999999999999874  7889999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      .+|.++...|++++|++.+.++++.+|.|..+|...+.+....
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999886544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.4e-14  Score=114.79  Aligned_cols=122  Identities=25%  Similarity=0.401  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISLN   71 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   71 (268)
                      +......|+.+++.|+|..|+..|++|+..-+..               ..++.|++.|+.++++|..|+..+.++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            5567889999999999999999999998864321               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        72 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      |+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..+......+.+.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877766554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.61  E-value=2.6e-14  Score=126.97  Aligned_cols=130  Identities=12%  Similarity=0.008  Sum_probs=125.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      -|.++++++.+|.+....|++++|...++.+++.+|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|+.++|....
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.60  E-value=1.7e-13  Score=108.32  Aligned_cols=207  Identities=14%  Similarity=0.161  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      -..+......++..|++..||++....|++.|.++..+..++.||...|+...||...+.+-++..++.+.++.++.+++
T Consensus       155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY  234 (504)
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            34556667778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSR---KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ..|+.+.++...+.+|+++|++...+-   .+..+...+...+++++-......+......-...+...+-.-+...-.-
T Consensus       235 ~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c  314 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC  314 (504)
T ss_pred             hhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence            999999999999999999999866544   44444444444444433222222222211111111110000000000000


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      ..+.-.+.+.+|+..+.+++.++|+          +|..-..++.|+.+|+++.+++++.
T Consensus       315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            0122246778888888888888886          4667778889999999999887765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.60  E-value=1.7e-14  Score=116.75  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=37.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH--------------------------------
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA--------------------------------   50 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~--------------------------------   50 (268)
                      +|.++..+..+|......++++.|+..|++++..++.++..+..++.+                                
T Consensus        40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~  119 (280)
T PF13429_consen   40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQL  119 (280)
T ss_dssp             ------------------------------------------------------------------------------H-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            356666666777777777777777777777777666655444444444                                


Q ss_pred             HHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           51 FLHLVKLNKALADAETTISLN--PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        51 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      +...++++++...++++....  |.++..|..+|.++...|++++|+..|+++++++|+++.+...++.++...|+.+++
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~  199 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA  199 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence            444445555555555544332  344555555555555555555555555555555555555555555555444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=9e-15  Score=118.35  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++..+...|.++...|++++|+..|+++++.+|++..++..++.++...|+++++...+.......|.++..+..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            45566777777777777888888888888888888777777777777777777777777777777777777777777777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++..+|++++|+..|+++++.+|+++..+..++.++...|+.++|..+
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~  270 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL  270 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             Hhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888888888888888777888888777888877777777777554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.59  E-value=1.7e-13  Score=104.68  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=116.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|++...+...|...+.+|+|..|+..++++....|++.++|..+|.+|.+.|++++|...|.+++++.|..+.+..++|
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            56667777778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ..+.-.|+++.|...+.++...-+.+..+..+++.+....|++..|+.+.
T Consensus       176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            99999999999999999998888888999999999998999998887763

>TIGR00540 hemY_coli hemY protein

Probab=99.59  E-value=8.5e-13  Score=112.33  Aligned_cols=241  Identities=11%  Similarity=0.000  Sum_probs=182.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCI   84 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~   84 (268)
                      .+......|...+..|+++.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            3555677888999999999999999999999999888999999999999999999999999999999885 566777999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-h----HHHh------hhHHHH------
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-N----VDMV------QHLDEF------  147 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~----~~~~------~~~~~~------  147 (268)
                      +...|+++.|...+++.++..|+++.++..++.++...|+++++.+...... .    ....      .....+      
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998877533111 0    0000      000000      


Q ss_pred             -----HHHhhhh-------cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHH------------HHhhhhhhhHhhh
Q 024419          148 -----KSEMSEK-------YGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVY------------FLLDKEKTDTEKY  203 (268)
Q Consensus       148 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~  203 (268)
                           .......       ........+......+++++|....+++++..|+..            ...++...+.+..
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence                 0001111       112233334456668899999999999998877621            1235567788888


Q ss_pred             hHHhcCCcccc--Cc-cchhHHHHHHHHH--HHHHHH--HHhhhhCCCCcc
Q 024419          204 APIVNVDKAFE--SP-HTHGSCFQFLRQY--ADDSFS--SAACLVAPKSII  247 (268)
Q Consensus       204 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~--a~~~~~--ka~~~~~p~~~~  247 (268)
                      ++++...|...  .. ...|..+...+++  |.+.|+  +++ ...|++..
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~  372 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND  372 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH
Confidence            88888877763  11 1367777777788  999999  577 78887644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.57  E-value=1.9e-13  Score=95.85  Aligned_cols=107  Identities=19%  Similarity=0.245  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFR   80 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~   80 (268)
                      ++.++..|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5688999999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      +|.++...|++++|+..++++++..|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.56  E-value=1.8e-12  Score=109.87  Aligned_cols=240  Identities=12%  Similarity=0.015  Sum_probs=170.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-AAAFLHLVKLNKALADAETTISLNPQWEKG-YFRKGC   83 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~   83 (268)
                      .+...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+..+.|+++.|...+.++.+.+|++..+ ....+.
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~  161 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR  161 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            3456678888999999999999888776664433 4444444 666699999999999999999999998543 445599


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-HH-hhhHHH---------HH----
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-DM-VQHLDE---------FK----  148 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~---------~~----  148 (268)
                      ++...|+++.|+..+++.++.+|+++.++..++.++...|+++++.++....... .. ......         ..    
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998653211110 00 000000         00    


Q ss_pred             -----------HHh---hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HHH--HhhhhhhhHhhhhHHh
Q 024419          149 -----------SEM---SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYF--LLDKEKTDTEKYAPIV  207 (268)
Q Consensus       149 -----------~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~~a~~~~~~~~  207 (268)
                                 ..+   ...........+......++.++|.+..+++++..|+     .+-  ..++..++++..+..+
T Consensus       242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~l  321 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQI  321 (398)
T ss_pred             hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence                       000   0011112223334455678888899988888775544     122  3378888888888888


Q ss_pred             cCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          208 NVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       208 ~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ...|+..... ..|..+...+++  |.+.|++++ +..|++..
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~~~  363 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDAYD  363 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCHHH
Confidence            8877653222 256666666777  999999999 99998753

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.56  E-value=5.4e-13  Score=113.03  Aligned_cols=237  Identities=15%  Similarity=0.167  Sum_probs=176.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |..-..++.++.-.+..++|...+...+..++..|.+++.+-..|..+..+|+-++|....+.++..++.....|..+|.
T Consensus         4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl   83 (700)
T KOG1156|consen    4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL   83 (700)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence            33455889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ++...++|++|+++|..|+.++|+|..+|+-++.+...+++++.......  ..++           +.+.....+....
T Consensus        84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~--~LLq-----------l~~~~ra~w~~~A  150 (700)
T KOG1156|consen   84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN--QLLQ-----------LRPSQRASWIGFA  150 (700)
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH--HHHH-----------hhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999887644321  0011           1111122223333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhch---hH---------------HHHHhhhhhhhHhhhhHHhcCCccc----cCccchhH
Q 024419          164 VFSFVVETMETAVKSWHETSKVD---AK---------------VYFLLDKEKTDTEKYAPIVNVDKAF----ESPHTHGS  221 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~---~~---------------~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~  221 (268)
                      +.....+.+..|.+..+...+..   |.               +..-.|...++.+   ......+..    ......+.
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale---~L~~~e~~i~Dkla~~e~ka~  227 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE---HLLDNEKQIVDKLAFEETKAD  227 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH---HHHhhhhHHHHHHHHhhhHHH
Confidence            44555666666655554432222   11               2223344444443   333333332    12233677


Q ss_pred             HHHHHHHH--HHHHHHHHhhhhCCCCcccccccccccc
Q 024419          222 CFQFLRQY--ADDSFSSAACLVAPKSIISYPQVYKPIC  257 (268)
Q Consensus       222 ~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~~~~~  257 (268)
                      ++..++++  |...|..-+ ..+|+|...|....+..|
T Consensus       228 l~~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  228 LLMKLGQLEEAVKVYRRLL-ERNPDNLDYYEGLEKALG  264 (700)
T ss_pred             HHHHHhhHHhHHHHHHHHH-hhCchhHHHHHHHHHHHH
Confidence            88888888  999999999 999999988766554444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=1.2e-13  Score=99.33  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        28 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      +.+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419          108 SAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ++..+..+|.++...|++++|....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~  108 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKAL  108 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999997653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=6.1e-13  Score=97.55  Aligned_cols=124  Identities=35%  Similarity=0.602  Sum_probs=111.4

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      ..+..+...|+-+|.+|+|++|..-|..||...|..     ..+|.++|.|..+++.++.|+..+.++|+++|.+..++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            346678889999999999999999999999999975     357889999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ++|.+|.++.+|++|++.|+++++.+|....+...+.++-.....-.+.
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999998888887776555544443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=3.3e-12  Score=100.22  Aligned_cols=224  Identities=13%  Similarity=0.113  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCI   84 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~   84 (268)
                      -+-.|..+.-..+.++|++.|...++.+|...++++.+|..+.+.|+.+.||..-+..+ ..|+.     .-+...||.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHH
Confidence            35577888888999999999999999999999999999999999999999999765554 45664     4678999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      |...|-++.|...|....+...--..+...|..+|...++|++|++....-..+  .+.  .    ........++....
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q--~----~~~eIAqfyCELAq  188 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQ--T----YRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCc--c----chhHHHHHHHHHHH
Confidence            999999999999999988766666789999999999999999997653210000  000  0    01111233444444


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccchhHHHHHHHHH--H
Q 024419          165 FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--A  230 (268)
Q Consensus       165 ~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--a  230 (268)
                      ......+.+.|...+.+++..+|+          ++...|++.+|++.++.+++-+|++..  ...+..+|..+|+.  .
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            455566667777777777777765          455666777777777777777776532  22255566666655  4


Q ss_pred             HHHHHHHhhhhCC
Q 024419          231 DDSFSSAACLVAP  243 (268)
Q Consensus       231 ~~~~~ka~~~~~p  243 (268)
                      .....+++ +..+
T Consensus       269 ~~fL~~~~-~~~~  280 (389)
T COG2956         269 LNFLRRAM-ETNT  280 (389)
T ss_pred             HHHHHHHH-HccC
Confidence            55555555 4444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.53  E-value=7.5e-14  Score=110.30  Aligned_cols=228  Identities=18%  Similarity=0.173  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+..+|+.|+++|.|++||.+|.+++..+|.++..+.++|.+|+++..|..|...+..|+.+|.....+|-++|.+-..+
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH
Q 024419           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (268)
                      |+..+|.+.++.+|++.|++.+....++.+..    ..++.-+......  ..+........+      ...-.|.....
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G--~~~A~Q~~~Q~l------~~K~~G~~Fsk  246 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPG--FTPARQGMIQIL------PIKKPGYKFSK  246 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCC--CCccccchhhhc------cccCcchhhhh
Confidence            99999999999999999998776665555532    2222111110000  000000011111      01122333445


Q ss_pred             HHHHHHHHHhhhhhhhchh---------HHHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHH
Q 024419          169 VETMETAVKSWHETSKVDA---------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS  236 (268)
Q Consensus       169 ~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~k  236 (268)
                      .+.++.++.++.+.+....         ..|....+++.++....+++..++....... .+.+-..++..  +...|+-
T Consensus       247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T  326 (536)
T KOG4648|consen  247 KAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQT  326 (536)
T ss_pred             hhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhh
Confidence            6777777777765433222         2466677778888888888877665432222 45555666655  8888888


Q ss_pred             HhhhhCCCCcccc
Q 024419          237 AACLVAPKSIISY  249 (268)
Q Consensus       237 a~~~~~p~~~~~~  249 (268)
                      ++ .+.|.+-.+.
T Consensus       327 ~~-~~~P~~~~~~  338 (536)
T KOG4648|consen  327 AV-KVAPAVETPK  338 (536)
T ss_pred             ee-eeccccccch
Confidence            88 8888765443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.53  E-value=6e-13  Score=95.58  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=101.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      ++..-+..+..|..++..|++++|...|+-....+|.+.+.|+++|.|+..+++|++|+..|..+..++++++.+.+..|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      .|+..+|+.+.|+.+|+.++. .|.+.....
T Consensus       113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            999999999999999999998 566554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.53  E-value=5.9e-13  Score=104.97  Aligned_cols=126  Identities=19%  Similarity=0.237  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCC
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLHL--------VKLNKALADAETTISLNPQW   74 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~   74 (268)
                      ...+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.++...        |++++|++.+++++..+|++
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            3468899999999999999999999999999998876   799999999987        88999999999999999998


Q ss_pred             HHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           75 EKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        75 ~~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..++                 ..+|.++...|++++|+..|++++...|+.   +.++..++.++...|++++|...
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~  225 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA  225 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6442                 467889999999999999999999997765   58999999999999999999765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.51  E-value=3.9e-12  Score=107.85  Aligned_cols=232  Identities=8%  Similarity=0.003  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      +...+......|+++.|..++.++.+.+|++.. .....+.++...|++++|+..++++++.+|+++.++..++.+|...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            344466669999999999999999999998854 4445599999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHH-----HHHHH--HHHhHHH-HhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419           89 EQYDDALSAFQTALQYNPQSAEVSRKIK-RVS-----QLAKD--KKRAQEV-ENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~-----~~~~~--~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (268)
                      |++++|+..+.+..+..+.++.....+- ..+     ...+.  .+..... ..........+.............++..
T Consensus       201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~  280 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD  280 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence            9999999998888877766544322111 111     00000  0011010 0000000001111111111111111111


Q ss_pred             hhHH-----------------HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          160 CWKH-----------------VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       160 ~~~~-----------------~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      ....                 ......++.+++++..++.++.+|+          ++...+++++|.+.+++++...|+
T Consensus       281 ~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~  360 (398)
T PRK10747        281 TAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD  360 (398)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            1111                 1111236777788888887777776          466778999999999999999988


Q ss_pred             ccCccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419          213 FESPHTHGSCFQFLRQY--ADDSFSSAACLVA  242 (268)
Q Consensus       213 ~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~  242 (268)
                      .......+.++...|+-  |...|++++ .+-
T Consensus       361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~  391 (398)
T PRK10747        361 AYDYAWLADALDRLHKPEEAAAMRRDGL-MLT  391 (398)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhh
Confidence            75444577778877766  999999998 653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=1e-13  Score=87.44  Aligned_cols=66  Identities=21%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNP  106 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p  106 (268)
                      +.+|..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3444444444444445555555555555444444444445555544444 34445555555544444

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.51  E-value=7.6e-12  Score=109.69  Aligned_cols=248  Identities=15%  Similarity=0.193  Sum_probs=172.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++.+.|+.++|+...-.|-.++|++.+.|..++....++|++.+|+-+|.+||+.+|.+....+..+
T Consensus       169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers  248 (895)
T KOG2076|consen  169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS  248 (895)
T ss_pred             CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHhHHHHh-hhh---------hHHHh------
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVEN-IRS---------NVDMV------  141 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~---------~~~~~------  141 (268)
                      .+|.++|+...|...|.+++..+|..     ...-...++.+...+.-+.|.+... ...         .+...      
T Consensus       249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~  328 (895)
T KOG2076|consen  249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK  328 (895)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            99999999999999999999999922     1112222333333333333333211 000         00000      


Q ss_pred             --------hhHHHHHH----------------------------HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419          142 --------QHLDEFKS----------------------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV  185 (268)
Q Consensus       142 --------~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  185 (268)
                              ..+.....                            ++..+..-+....+.+.+......+++.++-..-..
T Consensus       329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~  408 (895)
T KOG2076|consen  329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV  408 (895)
T ss_pred             hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence                    00000000                            000000000111222233334444555554433222


Q ss_pred             hh-----------HHHHHhhhhhhhHhhhhHHhcCCcccc--CccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccccc
Q 024419          186 DA-----------KVYFLLDKEKTDTEKYAPIVNVDKAFE--SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYP  250 (268)
Q Consensus       186 ~~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~  250 (268)
                      .|           +.+...|++..|+..+..+....+..-  ....+|.||..++.|  |...|++++ .++|++.++..
T Consensus       409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri  487 (895)
T KOG2076|consen  409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARI  487 (895)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhh
Confidence            22           256678999999999998888754332  344489999999988  999999999 99999988765


Q ss_pred             c
Q 024419          251 Q  251 (268)
Q Consensus       251 ~  251 (268)
                      .
T Consensus       488 ~  488 (895)
T KOG2076|consen  488 T  488 (895)
T ss_pred             h
Confidence            4

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=9.4e-14  Score=87.63  Aligned_cols=67  Identities=27%  Similarity=0.535  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNP   72 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p   72 (268)
                      ++..+..+|..++..|+|++|+..|+++++.+|+++.+++++|.|+..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999998

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.51  E-value=1.1e-12  Score=98.25  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=94.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      .+..+..++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++...|++++|+..+++++..+|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            35677889999999999999999999999999887653   578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccC--------------HHHHHHHHHHHHhhCCCC
Q 024419           80 RKGCILEAMEQ--------------YDDALSAFQTALQYNPQS  108 (268)
Q Consensus        80 ~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~  108 (268)
                      .+|.++...|+              +++|++.+++++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999887              567778888888888876

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.50  E-value=3.4e-12  Score=115.64  Aligned_cols=171  Identities=11%  Similarity=0.037  Sum_probs=134.2

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|..+...+..+...+++|+++.|+..|+++++.+|.++.....+..++...|+.++|+..+++++.-.|........+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            46788999999999999999999999999999999999965545888899999999999999999993334445555555


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++...|++++|++.|+++++.+|+++.++..++.++...++.++|.+...  ......+.              ....
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~--~l~~~dp~--------------~~~~  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT--ELAERDPT--------------VQNY  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--HhcccCcc--------------hHHH
Confidence            8899999999999999999999999999999999898888888888866521  11111111              1111


Q ss_pred             HHH--HHHHHHHHHHHHHhhhhhhhchhH
Q 024419          162 KHV--FSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       162 ~~~--~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ...  +....+...+|++.+++++..+|.
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence            111  122235555599999999999886

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.50  E-value=8.2e-13  Score=88.08  Aligned_cols=99  Identities=34%  Similarity=0.626  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      +++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCC
Q 024419           89 EQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~  107 (268)
                      |+++.|...+.++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.49  E-value=1.8e-12  Score=92.78  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             HHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           33 AIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        33 al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      ...++ ++..+..+.+|..++..|++++|+..|+.+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34567 77889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q 024419          112 SRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       112 ~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +.++|.++...|+.+.|.+.
T Consensus       106 ~~~ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=9.6e-12  Score=94.53  Aligned_cols=122  Identities=14%  Similarity=0.133  Sum_probs=109.0

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.+.+.....|..+...|++++|+++|+..++-||++..++-..-.+...+|+.-+||+.....++..|.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            56677778888999999999999999999999999999888888888888999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      +|...|+|++|.-+++..+-+.|.++..+..++.++..+|..
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~  204 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA  204 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999988877653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.6e-13  Score=110.62  Aligned_cols=224  Identities=13%  Similarity=0.161  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      .-....|..+++..+|..|+..|..|++..|+++..|.+.+.++...++|++|.-..++.++++|..+..+...++++..
T Consensus        50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a  129 (486)
T KOG0550|consen   50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA  129 (486)
T ss_pred             HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence            44667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch-----hhhHHHHHHHHHHHHHHHHhhhhhhhchhH--------
Q 024419          122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE-----ECWKHVFSFVVETMETAVKSWHETSKVDAK--------  188 (268)
Q Consensus       122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------  188 (268)
                      .+...+|.+.....+....+..+......+......+     ...........+++++|+..--..+++++.        
T Consensus       130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr  209 (486)
T KOG0550|consen  130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR  209 (486)
T ss_pred             hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence            9998888766543333333333332222222222112     222233445578888888877777777765        


Q ss_pred             --HHHHhhhhhhhHhhhhHHhcCCccccCcc-------------chhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419          189 --VYFLLDKEKTDTEKYAPIVNVDKAFESPH-------------THGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ  251 (268)
Q Consensus       189 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~  251 (268)
                        +++..++.++++.+|++++.++|+....-             ..|.-...-|.|  |.+.|..|| .++|+|......
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~nak  288 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAK  288 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHH
Confidence              56677888999999999999988652111             123333444555  999999999 999999988888


Q ss_pred             cccccccccchhhcc
Q 024419          252 VYKPICLERSRITKV  266 (268)
Q Consensus       252 ~~~~~~~~~~~~~~~  266 (268)
                      ++.+.+..+.++++.
T Consensus       289 lY~nra~v~~rLgrl  303 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRL  303 (486)
T ss_pred             HHHHhHhhhcccCCc
Confidence            888887777666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=2e-11  Score=92.81  Aligned_cols=170  Identities=15%  Similarity=0.048  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+-...-+....|+.+.|..++++.....|++.++-...|..+..+|++++|++.|+..+.-||.+...+.+.-.+...+
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence            44455566778899999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH
Q 024419           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (268)
                      |+--+|++.+...++..|.+.++|..++.+|...+++++|.-..+      ...-+.++.+.....+++..+..|-    
T Consensus       134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE------E~ll~~P~n~l~f~rlae~~Yt~gg----  203 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE------ELLLIQPFNPLYFQRLAEVLYTQGG----  203 (289)
T ss_pred             CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH------HHHHcCCCcHHHHHHHHHHHHHHhh----
Confidence            999999999999999999999999999999999999999965421      1111122222233334444333332    


Q ss_pred             HHHHHHHHHhhhhhhhchhH
Q 024419          169 VETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       169 ~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .+.++.|.++|.++++++|.
T Consensus       204 ~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  204 AENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHHHHHHHHHHHHHHhChH
Confidence            57788899999999999995

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=2.1e-12  Score=105.74  Aligned_cols=235  Identities=15%  Similarity=0.086  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      -..++-.++++|+++.|++.+.-.-+.+.... .+-.+++..++.+  .++..|..+...++.++-.|+.+..+.|.+-+
T Consensus       422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF  501 (840)
T ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence            35678889999999999999887766665543 3456677666664  47889999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (268)
                      ..|++++|.+.|+.+|.-+..+.++++++|..+..+|+.++|......         +    -.+......+......++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k---------l----h~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK---------L----HAILLNNAEVLVQIANIY  568 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH---------H----HHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999776310         0    011222233445555567


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH---HHHH
Q 024419          167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY---ADDS  233 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~  233 (268)
                      ..+++..+|++.+..+..+-|.          .|...|+-.+|.+++-..-...|+....-.+-..|..-.+|   ++.+
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            7788888899988887666553          45566777777777666666666654333333344444455   9999


Q ss_pred             HHHHhhhhCCCCccccccccccccccc
Q 024419          234 FSSAACLVAPKSIISYPQVYKPICLER  260 (268)
Q Consensus       234 ~~ka~~~~~p~~~~~~~~~~~~~~~~~  260 (268)
                      |++|. -+-|+-..  +|++...|++|
T Consensus       649 ~ekaa-liqp~~~k--wqlmiasc~rr  672 (840)
T KOG2003|consen  649 FEKAA-LIQPNQSK--WQLMIASCFRR  672 (840)
T ss_pred             HHHHH-hcCccHHH--HHHHHHHHHHh
Confidence            99999 88887543  55566666666

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.46  E-value=2.4e-13  Score=89.26  Aligned_cols=82  Identities=23%  Similarity=0.398  Sum_probs=74.2

Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024419           19 KAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS   96 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~   96 (268)
                      .+|+|+.|+..++++++.+|.  +...++.+|.|++++|++++|+..+++ +..+|.++..++.+|.|+..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999999999995  466788899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHH
Q 024419           97 AFQTA  101 (268)
Q Consensus        97 ~~~~~  101 (268)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.45  E-value=6.2e-12  Score=107.27  Aligned_cols=198  Identities=17%  Similarity=0.191  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-------   71 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------   71 (268)
                      +..+...|..|...++|.+|+..|++|+.+        +|.-+.++.++|.+|...|++++|..++++|+.+-       
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~  320 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS  320 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence            344556999999999999999999999987        45557889999999999999999999999999762       


Q ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhh
Q 024419           72 -PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ  142 (268)
Q Consensus        72 -p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (268)
                       |+-...+..++.++..++++++|+..+++++++.        |.-+..+.++|.++..+|++++|.++.+  +.+....
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k--~ai~~~~  398 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK--KAIQILR  398 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHH
Confidence             3446778889999999999999999999999863        2336688999999999999999988742  2222111


Q ss_pred             hHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhH
Q 024419          143 HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAP  205 (268)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~  205 (268)
                      .   .........+.+....+......+.+.+|-..|.++..+.+.                 .|..+|++++|++.-..
T Consensus       399 ~---~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  399 E---LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             h---cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            0   000001111222223333334455555566666665555422                 57788888888887777


Q ss_pred             HhcC
Q 024419          206 IVNV  209 (268)
Q Consensus       206 ~~~~  209 (268)
                      ++..
T Consensus       476 ~~~~  479 (508)
T KOG1840|consen  476 VLNA  479 (508)
T ss_pred             HHHH
Confidence            7754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.45  E-value=6.4e-12  Score=96.09  Aligned_cols=129  Identities=14%  Similarity=0.219  Sum_probs=123.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|.+..+ ...+..+...|+-+.+..+..++...+|.+..++...|......|++.+|+..++++..++|++.++|..+|
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            5777777 889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+|.+.|++++|...|.+++++.|+++.+..+++..+...|+++.|..+.
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998763

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=1.7e-12  Score=102.14  Aligned_cols=217  Identities=17%  Similarity=0.201  Sum_probs=166.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ   90 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~   90 (268)
                      .++|.+|+..|-+.+|...++.+++..| .++.+..++.+|.+..++..|+..|...+...|.++..+...+.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            5689999999999999999999999776 677888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH
Q 024419           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE  170 (268)
Q Consensus        91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (268)
                      +++|.+.|+.+++.+|.|.++.--++.-+..-++.+-|..+..      ...       .+....+...+..+..-+.-+
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR------RiL-------qmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR------RIL-------QMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH------HHH-------HhcCCChHHHhhHHHHHHhhc
Confidence            9999999999999999999888777777777777777765531      111       122233444455555556667


Q ss_pred             HHHHHHHhhhhhhhchh------HHHH-------HhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--------
Q 024419          171 TMETAVKSWHETSKVDA------KVYF-------LLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--------  229 (268)
Q Consensus       171 ~~~~A~~~~~~~~~~~~------~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  229 (268)
                      +++-++..|.+++....      ++++       ..|+..-|...++.++.-++.      |+..+..++..        
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ------HGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc------hHHHHHhHHHHHhhcCchH
Confidence            78888888888765543      2455       456788888888888876654      45555554433        


Q ss_pred             -HHHHHHHHhhhhCCCCccc
Q 024419          230 -ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       230 -a~~~~~ka~~~~~p~~~~~  248 (268)
                       |...+..|- ...|.-...
T Consensus       447 ~Arsll~~A~-s~~P~m~E~  465 (478)
T KOG1129|consen  447 GARSLLNAAK-SVMPDMAEV  465 (478)
T ss_pred             HHHHHHHHhh-hhCcccccc
Confidence             777777787 888875543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.44  E-value=7.6e-12  Score=93.38  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=86.4

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..+..++..|..+...|++++|+..|++++.+.|++   +.++.++|.++...|++++|+..+++++.++|.+...+..+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l  112 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            456778889999999999999999999998886653   45889999999999999999999999999999988888888


Q ss_pred             HHHHH-------HccCHH-------HHHHHHHHHHhhCCCCH
Q 024419           82 GCILE-------AMEQYD-------DALSAFQTALQYNPQSA  109 (268)
Q Consensus        82 a~~~~-------~~~~~~-------~A~~~~~~~l~~~p~~~  109 (268)
                      |.++.       ..|+++       +|+..|++++..+|.+.
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            88888       666766       55666667777777654

>TIGR00540 hemY_coli hemY protein

Probab=99.44  E-value=2.7e-11  Score=103.15  Aligned_cols=235  Identities=8%  Similarity=-0.020  Sum_probs=153.0

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      |.....+...|.....+|+++.|.+++.++.+..|++. .+....+.++...|++++|...+++.++.+|+++.++..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33455677889999999999999999999999999885 57777899999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HH---HHHHHHHHhH-HHHh----hhhhHHHhhhHHHHHHHhhh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VS---QLAKDKKRAQ-EVEN----IRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~---~~~~~~~~a~-~~~~----~~~~~~~~~~~~~~~~~~~~  153 (268)
                      .++...|++++|.+.+.+.++..+.++.....+.. ..   ...+..+++. .+..    ........+.+.........
T Consensus       195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~  274 (409)
T TIGR00540       195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI  274 (409)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999875544433211111 00   1111111110 0000    00000001111111111111


Q ss_pred             hcCchh----------------------hhHHHHHHHHHHHHHHHHhhhhhhhchhH------------HHHHhhhhhhh
Q 024419          154 KYGAEE----------------------CWKHVFSFVVETMETAVKSWHETSKVDAK------------VYFLLDKEKTD  199 (268)
Q Consensus       154 ~~~~~~----------------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~a  199 (268)
                      ..+...                      ..........++.+.+++.+++.++.+|+            +++..|++++|
T Consensus       275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A  354 (409)
T TIGR00540       275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA  354 (409)
T ss_pred             HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence            111111                      11111111123345556666555555443            46678999999


Q ss_pred             Hhhhh--HHhcCCccccCccchhHHHHHHHHH--HHHHHHHHh
Q 024419          200 TEKYA--PIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       200 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~  238 (268)
                      .++++  .++...|+.......+..+..+|+.  |.+.+++++
T Consensus       355 ~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       355 ADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999  5777777765444577888888866  999999987

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=2.4e-11  Score=108.37  Aligned_cols=141  Identities=7%  Similarity=-0.077  Sum_probs=120.7

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        34 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      ..-.|.+++++.++|.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.++.
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            34478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419          114 KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA  187 (268)
Q Consensus       114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  187 (268)
                      .++.++..+|++++|++.+.            ... ...+.....+...+......|+.++|...|++++....
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~------------~~~-~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFE------------RLS-RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHH------------HHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999987742            010 01223334556667777778888888888888876654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=4.9e-12  Score=99.54  Aligned_cols=198  Identities=11%  Similarity=-0.008  Sum_probs=130.8

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..++.+..++.+|-..++...|+..|.+.+...|.++..+...+.++..++++++|.+.|+.+++.+|.|+++.-.+|..
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            34566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHh-hhhcCchhhhHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM-SEKYGAEECWKH  163 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (268)
                      |+..++.+-|+.+|+++|++--.+++.+.++|.+-...++++-+....           ........ .....++++..+
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf-----------~RAlstat~~~~aaDvWYNlg  402 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF-----------QRALSTATQPGQAADVWYNLG  402 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH-----------HHHHhhccCcchhhhhhhccc
Confidence            777777777777777777777777777777777776666666553221           00011000 122344455555


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH---H-------HHHhhhhhhhHhhhhHHhcCCccc
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK---V-------YFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~---~-------~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      .+....|++.-|..+|+-++.-+++   .       -...|+...|...+..+-...|..
T Consensus       403 ~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  403 FVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             eeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            5555667777777777777666665   1       123466677777777776666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.41  E-value=3.1e-11  Score=99.71  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=119.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |....+.+..+...+..|++++|...++..+...|+|+..+...+.++...++..+|++.+++++.++|+...+++++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      ++.+.|++.+|+..++..+.-+|+++..|..|++.+..+|+..++.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            9999999999999999999999999999999999999998887763

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.41  E-value=6.1e-11  Score=107.65  Aligned_cols=237  Identities=15%  Similarity=0.161  Sum_probs=158.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.....+...|..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence            34455566668899999999999999999999999999999999999999999999999999999999986554 55666


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHH---------H--------------
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD---------M--------------  140 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~--------------  140 (268)
                      ++...++..+|++.++++++.+|++..++..+..+....|-...|.++.......-         .              
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~  257 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT  257 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence            66667788779999999999999999998888888777776666655432111000         0              


Q ss_pred             ----------hhhHHHHHHHhhhhc-Cch----h-----hhHHHHHHHHHHHHHHHHhhhhhhhch---hH--------H
Q 024419          141 ----------VQHLDEFKSEMSEKY-GAE----E-----CWKHVFSFVVETMETAVKSWHETSKVD---AK--------V  189 (268)
Q Consensus       141 ----------~~~~~~~~~~~~~~~-~~~----~-----~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~--------~  189 (268)
                                ...+..+. .+.... ..+    .     .-+-......+++.+++..|+......   |.        .
T Consensus       258 ~~~~~r~~~~d~ala~~~-~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada  336 (822)
T PRK14574        258 RSETERFDIADKALADYQ-NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA  336 (822)
T ss_pred             ccchhhHHHHHHHHHHHH-HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence                      00000000 000000 001    0     111112344778888888887654222   32        5


Q ss_pred             HHHhhhhhhhHhhhhHHhcCCccc-cCccc----hhHHHHHHH--HH--HHHHHHHHhhhhCC
Q 024419          190 YFLLDKEKTDTEKYAPIVNVDKAF-ESPHT----HGSCFQFLR--QY--ADDSFSSAACLVAP  243 (268)
Q Consensus       190 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~--~~--a~~~~~ka~~~~~p  243 (268)
                      |..+++..+|...|+.++.-++.. .....    .+.+|..+.  +|  |....++.. ...|
T Consensus       337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~-~~~p  398 (822)
T PRK14574        337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS-EQTP  398 (822)
T ss_pred             HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH-hcCC
Confidence            788899999999999988765321 11111    344555554  55  777777777 5333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.40  E-value=6.3e-11  Score=100.98  Aligned_cols=205  Identities=14%  Similarity=0.018  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      .+.+..-+.....+++.++|+..++++++..|....+|+.+|.++.++++.+.|.+.|..-++..|..+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            45666777788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH-----------------H
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK-----------------S  149 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~  149 (268)
                      ..|+.-.|...++++.-.+|++...|...-+.....|..+.|..+..  +.++.-+..+.+.                 .
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma--kALQecp~sg~LWaEaI~le~~~~rkTks~D  808 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA--KALQECPSSGLLWAEAIWLEPRPQRKTKSID  808 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence            99999999999999999999999999999999888898888865421  1111111111111                 1


Q ss_pred             Hhhh--hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          150 EMSE--KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       150 ~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      .+..  ....+.+..+.+.+....+++|.+.|.++++++|+          .+...|..++-.+.+.+....+|.+
T Consensus       809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            1111  13334566667888999999999999999999998          2335677788888888888888755

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.39  E-value=1.6e-11  Score=91.57  Aligned_cols=140  Identities=11%  Similarity=0.112  Sum_probs=111.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccC
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQ   90 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~   90 (268)
                      .++-.+.|..+...+...++.++.+  ..+++.+|.++..+|++++|+..|++++.+.|+.   +.++..+|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~   87 (168)
T CHL00033          8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE   87 (168)
T ss_pred             ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence            3455566788888887776666665  6788999999999999999999999999997763   4689999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH
Q 024419           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE  170 (268)
Q Consensus        91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (268)
                      +++|+..+++++.++|.+...+..++.++...+....                                 ..+.+.....
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~---------------------------------~~g~~~~A~~  134 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI---------------------------------EQGDSEIAEA  134 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH---------------------------------HcccHHHHHH
Confidence            9999999999999999999999999998876553211                                 1222233456


Q ss_pred             HHHHHHHhhhhhhhchhH
Q 024419          171 TMETAVKSWHETSKVDAK  188 (268)
Q Consensus       171 ~~~~A~~~~~~~~~~~~~  188 (268)
                      .+++|+..|++++..+|.
T Consensus       135 ~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        135 WFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHHHHHHhCcc
Confidence            677788888888877775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.39  E-value=2.4e-12  Score=80.09  Aligned_cols=63  Identities=29%  Similarity=0.461  Sum_probs=34.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (268)
Q Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   74 (268)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.|+..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.38  E-value=2.5e-12  Score=80.00  Aligned_cols=65  Identities=25%  Similarity=0.422  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           45 SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        45 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.38  E-value=3.4e-11  Score=95.42  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHH
Q 024419            7 EMSLKDKGNEF-FKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYF   79 (268)
Q Consensus         7 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~   79 (268)
                      ....+..|..+ +..|+|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|+++++..|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888876 66799999999999999999998   579999999999999999999999999999887   478999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      .+|.++..+|++++|+..|+++++..|+...+-.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            9999999999999999999999999999876543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.38  E-value=2.2e-10  Score=90.22  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF   79 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~   79 (268)
                      .+..++..|..++..|+|++|++.|++++...|.+..+   .+.+|.+|++.+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            56778899999999999999999999999999988654   4899999999999999999999999999886   57799


Q ss_pred             HHHHHHHHcc---------------C---HHHHHHHHHHHHhhCCCCHH
Q 024419           80 RKGCILEAME---------------Q---YDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        80 ~la~~~~~~~---------------~---~~~A~~~~~~~l~~~p~~~~  110 (268)
                      .+|.++...+               +   ..+|+..|++.++..|+...
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence            9998875554               1   35688999999999998854

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2e-11  Score=95.68  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      +|.+++.|..+|.+++.+|++..|...|.+|+++.|+++..+..+|.+++...   .-.++...+++++..||.++.+.+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            56777777777777777777777777777777777777777777777766553   245777777777777777777777


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      .+|..++..|+|.+|+..++..+...|.+..
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            7777777777777777777777777766544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=5.8e-10  Score=87.81  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=153.1

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      |...++.+.+|+.+.+.|+.+.||.+=+..+. .|+-     ..+...+|.=|+..|=++.|...|........--..+.
T Consensus        66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al  144 (389)
T COG2956          66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL  144 (389)
T ss_pred             chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence            56678889999999999999999998766554 5543     46788899999999999999999998887655556788


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSA-----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      -.|-.+|....+|++|++.-++..++.|..-     ..+..++..+....+.+.|....  .+.           .....
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l--~kA-----------lqa~~  211 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL--KKA-----------LQADK  211 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH--HHH-----------HhhCc
Confidence            9999999999999999999999999988663     34666676666666777765442  111           11233


Q ss_pred             hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      ....+-.-.|.+....|+|+.|++.|+..++.+|.           +|..+|+..........+.+..+.
T Consensus       212 ~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            44555566777788899999999999999999987           588999999999999888887554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.1e-11  Score=98.78  Aligned_cols=195  Identities=11%  Similarity=0.074  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      .+..|+.-|..++..+++..|+.+-.+++..+|.+..++...|.++..+++.++|+-.|+.|..+.|...+.|-.+-.+|
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            35567888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH-HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIK-RVSQL-AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ...|++.+|.-.-..++..-|.+..++..+| .+..- -..-++|..+.+      ..       ..+.+.+-..-....
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e------k~-------L~~~P~Y~~AV~~~A  445 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE------KS-------LKINPIYTPAVNLIA  445 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH------hh-------hccCCccHHHHHHHH
Confidence            9999999999999999999999999999887 33221 122344444321      11       111222222333344


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      .+....+.++.+++..++.+...|+         ++.....+.+|.++|..++.++|..
T Consensus       446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  446 ELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            4556678888888888888877776         4556667788888888888888864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.35  E-value=3.5e-11  Score=90.13  Aligned_cols=121  Identities=15%  Similarity=0.214  Sum_probs=100.7

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      |..+.+++.+|.++...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++..+|++...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3567789999999999999999999999999987763   5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHHH
Q 024419          115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYF  191 (268)
Q Consensus       115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  191 (268)
                      +|.++...++...+...                                 .......+++|+..+.+++..+|..+.
T Consensus       112 lg~~~~~~g~~~~a~~~---------------------------------~~~A~~~~~~A~~~~~~a~~~~p~~~~  155 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGD---------------------------------QDEAEALFDKAAEYWKQAIRLAPNNYI  155 (172)
T ss_pred             HHHHHHHcCChHhHhhC---------------------------------HHHHHHHHHHHHHHHHHHHhhCchhHH
Confidence            99998777766554221                                 112245678888888888888888543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.34  E-value=1.4e-10  Score=89.17  Aligned_cols=107  Identities=21%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY   78 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~   78 (268)
                      ..++.++..|..++..|+|.+|+..|++++...|++   ..+.+.+|.+++..|+++.|+..+++.++..|++   ..++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467899999999999999999999999999999876   4789999999999999999999999999999986   4689


Q ss_pred             HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHH
Q 024419           79 FRKGCILEAME-----------QYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        79 ~~la~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      +.+|.++....           ...+|+..|+..+...|+++.+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            99999977653           3457999999999999988654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.33  E-value=4.7e-11  Score=99.95  Aligned_cols=172  Identities=19%  Similarity=0.112  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH----hhCCCCHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----SLNPQWEKGYFRK   81 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l   81 (268)
                      ..+.....|..+...|++++|+..+++++..+|++..++.. +..+...|++..+.....+++    ..+|....++..+
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            34556677888888888888888888888888888877665 555555555444444444444    4566667777788


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++...|++++|+..++++++++|+++.++..++.++...|++++|......  .+...+..       .......+..
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~--~l~~~~~~-------~~~~~~~~~~  191 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES--WRDTWDCS-------SMLRGHNWWH  191 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh--hhhccCCC-------cchhHHHHHH
Confidence            88999999999999999999999999999999999999999999999776321  11111100       0000112234


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419          162 KHVFSFVVETMETAVKSWHETSKVDA  187 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~~~~~  187 (268)
                      .+.++...|++++|+..+++++...|
T Consensus       192 la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         192 LALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            55667778888888888888765544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=2.2e-11  Score=94.93  Aligned_cols=100  Identities=14%  Similarity=0.239  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      -+-.-|.-.++.++|.+|+..|.+||.++|.++..|.++|.+|.++|+++.|++.++.++.+||....+|.+||.++..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            34455777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhhhHHHhhhH
Q 024419          123 KDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus       123 ~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                      |++.+|++.  +++.++..+..
T Consensus       163 gk~~~A~~a--ykKaLeldP~N  182 (304)
T KOG0553|consen  163 GKYEEAIEA--YKKALELDPDN  182 (304)
T ss_pred             CcHHHHHHH--HHhhhccCCCc
Confidence            999999665  34444444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.30  E-value=2.9e-10  Score=95.23  Aligned_cols=195  Identities=11%  Similarity=-0.046  Sum_probs=149.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      -|+.+.++..+|..+...|+++.|...+.++.+..|.+   .......|.++...|++++|+..+++++..+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            47889999999999999999999999999999888755   456778899999999999999999999999999987776


Q ss_pred             HHHHHHHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419           80 RKGCILEAMEQY----DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY  155 (268)
Q Consensus        80 ~la~~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (268)
                      . +..+...|++    ..+...+......+|.....+..++.++...|++++|.....  ..+.           ..+..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~--~al~-----------~~p~~  147 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR--RALE-----------LNPDD  147 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHh-----------hCCCC
Confidence            5 5555555544    444444444445677778888889999999999999976531  1111           22222


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                      .......+.+....+++++|+..+.+.+...|.              ++...|+.++|...|+.++...+
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            334455666777789999999999988877541              45577999999999999876654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.27  E-value=7.9e-11  Score=101.95  Aligned_cols=125  Identities=19%  Similarity=0.135  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      ..|...|..+...++-++|.-++.++-.++|..+..|+..|.++...|++.+|.+.|..++.+||+++.....+|.++..
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45667888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           88 MEQYDDALS--AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        88 ~~~~~~A~~--~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .|+...|..  .+..+++++|.|+++|+.+|.+....|+.++|.+..
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            999888877  999999999999999999999999999999997764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.25  E-value=9.7e-11  Score=101.40  Aligned_cols=107  Identities=18%  Similarity=0.198  Sum_probs=101.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l   81 (268)
                      |..+..++..|..+...|.+++|.+.|..|+.++|+++.....+|.|+.+.|+..-|..  ....+++++|.+.++|+.+
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999888888  9999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      |.++...|+.+.|.++|..++++++.+|.
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999998864

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=5e-10  Score=87.91  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSA   97 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~   97 (268)
                      .+.+.-+.-++.-+..+|+|+.-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.++....   .-.++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            357788888999999999999999999999999999999999999999999999999999999887754   45678999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           98 FQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        98 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +++++.+||++..+...|+..+...|++.+|...
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~  249 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAA  249 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999999999999999999999999999999765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.23  E-value=4.2e-11  Score=75.15  Aligned_cols=65  Identities=22%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +..|++++|+..|++++..+|++..+++.+|.||.+.|++++|...+++++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34455555555555555555555555555555555555555555555555555555444444333

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.22  E-value=1.6e-09  Score=78.73  Aligned_cols=126  Identities=22%  Similarity=0.184  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF   79 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~   79 (268)
                      .+...+..+......++...+...++..++.+|++   ..+.+.+|.+++..|++++|+..|++++...|+.   ..+.+
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            45566777777778999999999999999999998   5778889999999999999999999999988765   46889


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ++|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|....
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y  141 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAY  141 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999976 3445556788999999999999999997653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.22  E-value=5.8e-11  Score=74.48  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      ++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998888776653

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.22  E-value=1.2e-09  Score=77.07  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=97.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGY   78 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~   78 (268)
                      ..+..++..|...+..|+|.+|++.++.+....|..   ..+.+.+|.+|+..+++++|+..+++-++++|.++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            446789999999999999999999999999998865   57899999999999999999999999999999874   679


Q ss_pred             HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHH
Q 024419           79 FRKGCILEAMEQ---------------YDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        79 ~~la~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      +..|.+++.+..               ..+|...|++.++..|++..+
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999999877               888999999999999988654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=4.2e-10  Score=74.67  Aligned_cols=89  Identities=19%  Similarity=0.320  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHH
Q 024419          123 KDKKRAQEV  131 (268)
Q Consensus       123 ~~~~~a~~~  131 (268)
                      ++++.|...
T Consensus        82 ~~~~~a~~~   90 (100)
T cd00189          82 GKYEEALEA   90 (100)
T ss_pred             HhHHHHHHH
Confidence            999988655

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=9.1e-10  Score=82.15  Aligned_cols=110  Identities=17%  Similarity=0.236  Sum_probs=104.4

Q ss_pred             CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      |.+...+..++++|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|.-+...|+|+.|.+.|...+++||.+--++.+
T Consensus        59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      +|..++.-|+++-|.+.+.+-.+.||++|-
T Consensus       139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             cceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            999999999999999999999999999975

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=7.4e-11  Score=88.95  Aligned_cols=100  Identities=27%  Similarity=0.420  Sum_probs=95.4

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+.-+...|+.++...+|..|+.+|.++|.++|..+..|.+++.||+++.+++.+....+++++++|+.+.+++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhh
Q 024419           85 LEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~  104 (268)
                      +.....|++|+..++++..+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            99999999999999999665

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.19  E-value=1.8e-10  Score=73.27  Aligned_cols=66  Identities=24%  Similarity=0.450  Sum_probs=40.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      .+++.+++|++|++++++++..+|.++..|..+|.|+..+|++++|+..++++++.+|+++.+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666666665554443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=9.8e-10  Score=83.37  Aligned_cols=108  Identities=26%  Similarity=0.382  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSN----------PTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      ...++...|+.++..|+|++|...|+.|+..        .|.+          ...+.|.+.|++..|+|-+++++....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999743        4443          578899999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      |..+|.|..+++..|.++...-+.++|...|.++|+++|.-..+-.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            9999999999999999999999999999999999999998655433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.18  E-value=4.3e-10  Score=93.72  Aligned_cols=89  Identities=12%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      +...|...+..|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHH
Q 024419          124 DKKRAQEVE  132 (268)
Q Consensus       124 ~~~~a~~~~  132 (268)
                      ++++|....
T Consensus        85 ~~~eA~~~~   93 (356)
T PLN03088         85 EYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHH
Confidence            999997663

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.17  E-value=2.2e-09  Score=83.32  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK   81 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l   81 (268)
                      .-.++.|..++..|+|..|...|..-++..|++   +.+++.+|.+++.+|+++.|...|..+++-.|++   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            448999999999999999999999999999986   5899999999999999999999999999998875   6889999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      |.+...+|+.++|..+|+++++..|+...+-..
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999998876543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.17  E-value=1.8e-09  Score=74.85  Aligned_cols=96  Identities=20%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRK   81 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l   81 (268)
                      +++++.|..+-..|+.++|+..|++++...+..   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999975443   578999999999999999999999999999888   77888889


Q ss_pred             HHHHHHccCHHHHHHHHHHHHh
Q 024419           82 GCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999988888764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.16  E-value=3e-10  Score=72.28  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=65.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (268)
Q Consensus        48 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  117 (268)
                      ..+|...+++++|+.++++++.++|+++.++..+|.++..+|++++|+..|+++++..|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999999999999999999999887665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=2.1e-10  Score=98.91  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=118.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++.+...+|.....+++|.++..+++..++++|-....|+++|.|..+.++++.|..+|..++.++|++..+|.+++.+
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            34555566666777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      |...++-.+|...+.++++-+-++..+|.+...+....|.+++|.+..
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            999999999999999999999999999999999999999999997653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.15  E-value=4.7e-09  Score=91.16  Aligned_cols=125  Identities=17%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhh--CC
Q 024419            6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--------KLNKALADAETTISL--NP   72 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~p   72 (268)
                      ++..++.+|..++..++   ...|+.+|++|++.+|+++.++-.++.++....        +...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45667889988887665   889999999999999999999999999887653        244666667776664  77


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..+.+|.-+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|.+.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~  475 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADA  475 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7888999999999999999999999999999999 578999999999999999999665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1.2e-09  Score=76.30  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRK  114 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~  114 (268)
                      +..++.+|..+...|++++|++.|.+++..+|++   ..+++.+|.++...|+++.|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999886   5789999999999999999999999999999886   678999


Q ss_pred             HHHHHHHHHHHHHhHHH
Q 024419          115 IKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       115 l~~~~~~~~~~~~a~~~  131 (268)
                      ++.++...++.++|...
T Consensus        82 ~~~~~~~~~~~~~A~~~   98 (119)
T TIGR02795        82 LGMSLQELGDKEKAKAT   98 (119)
T ss_pred             HHHHHHHhCChHHHHHH
Confidence            99999999999998765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.13  E-value=4e-09  Score=93.97  Aligned_cols=127  Identities=16%  Similarity=0.186  Sum_probs=108.6

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH------------------------------------HHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL------------------------------------FSNRA   48 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------~~~~a   48 (268)
                      .-+.++..+|..|....+...|..+|.+|.++||+++.+                                    |..+|
T Consensus       490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG  569 (1238)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence            345677788888888888888999999999888877533                                    44566


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ..|...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+...-+..+.+....|.+.++
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            66667777788999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHH
Q 024419          129 QEV  131 (268)
Q Consensus       129 ~~~  131 (268)
                      ...
T Consensus       650 ld~  652 (1238)
T KOG1127|consen  650 LDA  652 (1238)
T ss_pred             HHH
Confidence            654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.12  E-value=2.9e-09  Score=92.01  Aligned_cols=165  Identities=21%  Similarity=0.293  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH----------------------------HHHcCChH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA----------------------------FLHLVKLN   58 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~----------------------------~~~~~~~~   58 (268)
                      .+.|-....+|...|+..+|..+..+-++ .|.++..|+.+|.+                            ....++|+
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            45666777788888888888888888888 45555555544433                            34457899


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH
Q 024419           59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV  138 (268)
Q Consensus        59 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  138 (268)
                      ++..+++..++++|-....|+.+|.+..+.++++.|.++|.+++.++|++.++|.+++..+...++..+|-..       
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~-------  575 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK-------  575 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999998888443       


Q ss_pred             HHhhhHHHHHHHhhhhcCchhhhHHH--HHHHHHHHHHHHHhhhhhhhchh
Q 024419          139 DMVQHLDEFKSEMSEKYGAEECWKHV--FSFVVETMETAVKSWHETSKVDA  187 (268)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~  187 (268)
                              +..++..++.....+...  .....+.+++|++.+.+.+.+..
T Consensus       576 --------l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  576 --------LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             --------HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence                    233344445555555543  34457788888888877665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.11  E-value=2.4e-09  Score=77.83  Aligned_cols=96  Identities=24%  Similarity=0.257  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      ...+.+.+|..++..|++++|+..|+.++...|+.   ..+.+.+|.++...|++++|+..++. +.-.+-.+.++..+|
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence            36678889999999999999999999999987655   45788999999999999999999966 334445577888999


Q ss_pred             HHHHHccCHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l  102 (268)
                      .++...|++++|+..|++++
T Consensus       126 di~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.11  E-value=1.2e-08  Score=88.30  Aligned_cols=105  Identities=20%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      +.+.+.-+..++...|++++|++++......-++...++-.+|.++.++|++++|...|+..|..||+|...|..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            46778888999999999999999999998888889999999999999999999999999999999999999999998888


Q ss_pred             HHcc-----CHHHHHHHHHHHHhhCCCCHH
Q 024419           86 EAME-----QYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        86 ~~~~-----~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      ....     +.+.-...|+..-+..|....
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~  112 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDA  112 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccc
Confidence            4433     466667888888888886543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11906 transcriptional regulator; Provisional

Probab=99.10  E-value=3.8e-09  Score=87.93  Aligned_cols=123  Identities=13%  Similarity=0.001  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCC
Q 024419            9 SLKDKGNEFFKAG---NYLKAAALYTQAI---KQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ   73 (268)
Q Consensus         9 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~   73 (268)
                      .++.+|...+..+   ..+.|+.+|.+|+   .++|..+.+|..++.|++..         .+..+|.+..++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4577888887666   4568999999999   99999999999999999876         2356889999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.10  E-value=4.9e-09  Score=87.44  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=106.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~   93 (268)
                      -..+...++++.|++.+++..+.+|+   +...++.++..+++..+|+....++++.+|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34455678999999999999999875   566789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      |+...+++++..|++...|..|+.+|...|+++.|...
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999999999755

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.09  E-value=3.3e-10  Score=93.75  Aligned_cols=119  Identities=30%  Similarity=0.517  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +..+-..++..+..+.|+.|+..|.+|++++|+++..+-+++.++.+.+++..|+..+.++++.+|....+|++.|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      ..+++.+|...|++...+.|+++.+...+..+.....+.
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887766543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=6.3e-09  Score=86.34  Aligned_cols=113  Identities=18%  Similarity=0.133  Sum_probs=101.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|+++..+-..+.+++..++..+|++.+++++..+|.....+.++|.++++.|++++|+..++..+..+|+++..|..||
T Consensus       336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LA  415 (484)
T COG4783         336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA  415 (484)
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHH
Confidence            68888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      .+|..+|+..+|...+-....+.-.-..+...+
T Consensus       416 qay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l  448 (484)
T COG4783         416 QAYAELGNRAEALLARAEGYALAGRLEQAIIFL  448 (484)
T ss_pred             HHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999998877776665554444443333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.07  E-value=3.6e-10  Score=74.04  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             cCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           54 LVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        54 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .|+++.|+..+++++..+|.  +...++.+|.|++..|+|++|+..+++ ...+|.+......+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  466788899999999999999999999 889999999999999999999999999776


Q ss_pred             H
Q 024419          132 E  132 (268)
Q Consensus       132 ~  132 (268)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.06  E-value=8.6e-10  Score=89.63  Aligned_cols=193  Identities=13%  Similarity=0.194  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WE   75 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~   75 (268)
                      -.+.++|+.|+..++|++|+++-..-+.+      .-..+..--++|..+..+|.|++|+.++.+-+.+.-.      ..
T Consensus        56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~  135 (639)
T KOG1130|consen   56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES  135 (639)
T ss_pred             HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence            46788999999999999999875544332      1223455668999999999999999999887765322      36


Q ss_pred             HHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhH
Q 024419           76 KGYFRKGCILEAMEQ--------------------YDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        76 ~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      .+++++|.+|...|+                    ++.|.++|..-|++....      ..++-+||..|..+|++++|+
T Consensus       136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai  215 (639)
T KOG1130|consen  136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI  215 (639)
T ss_pred             HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence            789999999988763                    344556666555553322      346777888888899999997


Q ss_pred             HHHhhhhhHHHhhhHHH--HHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHH
Q 024419          130 EVENIRSNVDMVQHLDE--FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYF  191 (268)
Q Consensus       130 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~  191 (268)
                      ...+.+-.+  +..+..  -........++.       +..++.++.|+++|++.+.+.-.                .|.
T Consensus       216 ~~H~~RL~i--a~efGDrAaeRRA~sNlgN~-------hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt  286 (639)
T KOG1130|consen  216 HFHKLRLEI--AQEFGDRAAERRAHSNLGNC-------HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT  286 (639)
T ss_pred             HHHHHHHHH--HHHhhhHHHHHHhhcccchh-------hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence            764322222  111111  111223333443       55567777788888776544432                355


Q ss_pred             HhhhhhhhHhhhhHHhcC
Q 024419          192 LLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       192 ~~~~~~~a~~~~~~~~~~  209 (268)
                      .+.++.+|+.+..+=+.+
T Consensus       287 ll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  287 LLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            667777777777666655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.06  E-value=1.2e-09  Score=90.85  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=42.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      .|.++.+++++|..++..|+|++|+..|+++++++|++..+   |+++|.||..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45556666666666666666666666666666666666533   666666666666666666666666665

>PRK15331 chaperone protein SicA; Provisional

Probab=99.05  E-value=4e-09  Score=76.03  Aligned_cols=97  Identities=9%  Similarity=-0.024  Sum_probs=91.0

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      +.++..+..+..|.-++..|++++|...|+-....+|.+++.++.||.|+..+++|++|+..|..+..++++++.+.+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            45556688889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHH
Q 024419          116 KRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~~  132 (268)
                      |.++..+|+...|....
T Consensus       112 gqC~l~l~~~~~A~~~f  128 (165)
T PRK15331        112 GQCQLLMRKAAKARQCF  128 (165)
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            99999999999997753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.04  E-value=5e-07  Score=73.40  Aligned_cols=125  Identities=14%  Similarity=0.061  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCIL   85 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~   85 (268)
                      +......|..-+..|+|.+|.....++-+-.+...-.+..-+.+--++|+++.|-.+..++-+..++ ...+...++.+.
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            3445567777888999999999999998888888888888899999999999999999999999544 467788999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ...|+++.|.....++++..|.++.+.....++|...|.+.....+
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~  209 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI  209 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence            9999999999999999999999999999999999999999887665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.04  E-value=1.8e-09  Score=89.73  Aligned_cols=69  Identities=26%  Similarity=0.350  Sum_probs=66.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      .+|+++.+|+++|.+|..+|+|++|+.+|+++|+++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999865   999999999999999999999999998

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-09  Score=88.28  Aligned_cols=230  Identities=15%  Similarity=0.176  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQWEKGY   78 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~   78 (268)
                      .+-..|..+++.|++..-+..|+.|++.-..+.    .+|..+|.+|+-+++|.+|+++-..-|.+      .-..+...
T Consensus        19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence            455678899999999999999999999977663    57889999999999999999876555443      22346677


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHhH---HH----HhhhhhHHHhhhHH
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQ---EV----ENIRSNVDMVQHLD  145 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~a~---~~----~~~~~~~~~~~~~~  145 (268)
                      -+||.++..+|.|++|+.+..+-|.+..      ....+++++|.+|...|.-..-.   +.    .+..+.+.....+-
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy  178 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY  178 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence            8899999999999999999888776543      23568999999998876432211   00    11222222222221


Q ss_pred             HHHHHhh------hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhh
Q 024419          146 EFKSEMS------EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKY  203 (268)
Q Consensus       146 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~  203 (268)
                      .....+.      ...|..+-..|..++.+++++.|+..-+.-+.+...                ++..+|+++.|+++|
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            1111111      123334444455566677777777766655544432                577999999999999


Q ss_pred             hHHhcCCccc-------cCccchhHHHHHHHHH--HHHHHHHHh
Q 024419          204 APIVNVDKAF-------ESPHTHGSCFQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       204 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~--a~~~~~ka~  238 (268)
                      +..+.+....       .+.+.+|..|..+..+  |+.++.+-+
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL  302 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL  302 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            8877652211       1223356666666666  666666655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.03  E-value=8.8e-09  Score=74.99  Aligned_cols=96  Identities=18%  Similarity=0.334  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--
Q 024419           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ--   90 (268)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--   90 (268)
                      |+.|.+.++.....+|.+++.+.+=|.++..+.+          +++|++-|++||.++|+..++++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999998887754          4678999999999999999999999999998753  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           91 ---------YDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        91 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                               |++|.++|+++...+|+|......|...
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     7889999999999999998877766544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.02  E-value=1.5e-08  Score=91.92  Aligned_cols=97  Identities=10%  Similarity=0.016  Sum_probs=86.5

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----
Q 024419           34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA----  109 (268)
Q Consensus        34 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----  109 (268)
                      ...+|.+..+|..+...+...+++++|+..++.+++.+|+.+..|+.+|.++.+.+++.++...  .++...+.+.    
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            3458999999999999999999999999999999999999999999999999999988887655  6666666655    


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHHhHHHH
Q 024419          110 ---------------EVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       110 ---------------~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                                     .+++.+|.+|..+|..++|....
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y  139 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW  139 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence                           89999999999999999997664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.02  E-value=5.5e-08  Score=66.85  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG   82 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la   82 (268)
                      ...+-..|-.+...|+.+.|++.|.+++.+.|..+.+|.+++.++.-+|+.++|++.+++++++.-+.    -.++.+.|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            34556678888899999999999999999999999999999999999999999999999999986543    25789999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      .+|...|+-+.|...|+.+-++-...
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999999998775543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.02  E-value=1.7e-08  Score=91.91  Aligned_cols=123  Identities=14%  Similarity=0.026  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCI   84 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~   84 (268)
                      ..+|..+...+.+.|++++|+..|++..... .-+...+..+..++.+.|++++|...+..+++.. +.+..++..+...
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            4455555555555666666666665554431 1133455555555555555555555555555543 3344455555666


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      |.+.|++++|...|++..+   .+...|..+...+...|+.++|.++.
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf  414 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMF  414 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666666665533   23445666666666666666665553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.01  E-value=1.7e-08  Score=90.13  Aligned_cols=177  Identities=14%  Similarity=-0.006  Sum_probs=106.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  100 (268)
                      ++-+.|...+-+++.++|+-+.++..+|..|+...+...|..+|.+|.++||.++.+.-..+..|....+++.|....-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666555444


Q ss_pred             HHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch--hhhHHHHHHHHHHHHHHH
Q 024419          101 ALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETMETAV  176 (268)
Q Consensus       101 ~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~  176 (268)
                      +-+..|-.  ...|..+|-.+...++..++..               .+...+..+..+.  +...|..+...|++..|+
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~---------------~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al  616 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVC---------------EFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL  616 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHH---------------HHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence            44444432  2334444444444444444422               2233333333333  334445666788899999


Q ss_pred             HhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          177 KSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       177 ~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      +.|.++..++|.          .-...|++..++..+...+.....
T Consensus       617 KvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~  662 (1238)
T KOG1127|consen  617 KVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL  662 (1238)
T ss_pred             HhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            999999888887          233668888888888777765433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=7.4e-09  Score=84.29  Aligned_cols=100  Identities=15%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      .-.+.+++.++.+.++|..|+...+++|..+|+|.-+++.+|.++..+|+|+.|+..|+++++++|.|-.+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HccCHHHH-HHHHHHHHhhCC
Q 024419           87 AMEQYDDA-LSAFQTALQYNP  106 (268)
Q Consensus        87 ~~~~~~~A-~~~~~~~l~~~p  106 (268)
                      +..++.+. .+.|.+.+..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            88877765 788888887654

>PRK11906 transcriptional regulator; Provisional

Probab=98.98  E-value=2.1e-08  Score=83.58  Aligned_cols=108  Identities=9%  Similarity=-0.027  Sum_probs=98.3

Q ss_pred             hHhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419            4 EAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   74 (268)
                      |..+.++..++.+++..         .+..+|.+..++|++++|.++.++..+|.+....++++.|+..|++|+.++|+.
T Consensus       292 p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        292 TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence            55577888888877644         356789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      +.+|+..|.+....|+.++|++.++++++++|....+
T Consensus       372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            9999999999999999999999999999999976544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.94  E-value=2.4e-08  Score=69.32  Aligned_cols=90  Identities=18%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRKI  115 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l  115 (268)
                      .+++++|.++-.+|+.++|+..|++++...+..   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999975543   678999999999999999999999999999898   77788888


Q ss_pred             HHHHHHHHHHHHhHHH
Q 024419          116 KRVSQLAKDKKRAQEV  131 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~  131 (268)
                      +.++...|+.++|...
T Consensus        82 Al~L~~~gr~~eAl~~   97 (120)
T PF12688_consen   82 ALALYNLGRPKEALEW   97 (120)
T ss_pred             HHHHHHCCCHHHHHHH
Confidence            8888899999999665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.93  E-value=3.7e-09  Score=68.15  Aligned_cols=67  Identities=13%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD---P----SNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      |.-+.++..+|.++...|+|++|+++|++++++.   +    ..+.++.++|.|+..+|++++|+..+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455666666666666666666666666666541   1    11345556666666666666666666666553

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.91  E-value=1.7e-09  Score=69.78  Aligned_cols=67  Identities=22%  Similarity=0.368  Sum_probs=57.8

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISL----N---PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      |+-+.++.++|.+|..+|++++|+.+|++++++    .   |..+.++.++|.++...|++++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445678999999999999999999999999976    1   223678999999999999999999999999876

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=3.9e-07  Score=77.46  Aligned_cols=202  Identities=15%  Similarity=0.109  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...++.--+.+..+|+|++|.....+.+...|++..+..-.-.|..+.++|++|+...++-......+. ..+..+.|++
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Y   90 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHH
Confidence            356777778888999999999999999999999999999999999999999999854444332222222 2278999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhh--hhHHH---h--hhHHHHHHHhh-------
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR--SNVDM---V--QHLDEFKSEMS-------  152 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~---~--~~~~~~~~~~~-------  152 (268)
                      ++++.++|+.+++   ..++.+......-+++...++.+++|..++...  ...+.   .  ..+......+.       
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            9999999999998   567777778888899999999999998764321  11110   0  00000000000       


Q ss_pred             ----hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------------------HHHHhhhhhhhHhhh
Q 024419          153 ----EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------------------VYFLLDKEKTDTEKY  203 (268)
Q Consensus       153 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------~~~~~~~~~~a~~~~  203 (268)
                          .+.-...+.........+.|.+|++.++++..+..+                         ++..+|+..+|...|
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                001111233444555678888888888887433321                         456778888888888


Q ss_pred             hHHhcCCcc
Q 024419          204 APIVNVDKA  212 (268)
Q Consensus       204 ~~~~~~~~~  212 (268)
                      ...+..++.
T Consensus       248 ~~~i~~~~~  256 (652)
T KOG2376|consen  248 VDIIKRNPA  256 (652)
T ss_pred             HHHHHhcCC
Confidence            877776553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.90  E-value=4.5e-08  Score=77.76  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q 024419           41 PTLFSNRAAAF-LHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSR  113 (268)
Q Consensus        41 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~  113 (268)
                      ...++..|..+ +..|+|++|+..|++.++..|+.   +.+++.+|.+|+..|++++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46788888876 56799999999999999999998   5899999999999999999999999999998875   78899


Q ss_pred             HHHHHHHHHHHHHHhHHHH
Q 024419          114 KIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       114 ~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+|.++...|+.++|....
T Consensus       222 klg~~~~~~g~~~~A~~~~  240 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVY  240 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            9999999999999997663

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.90  E-value=3.6e-07  Score=85.78  Aligned_cols=126  Identities=15%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFR   80 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~   80 (268)
                      +...+..+...+.+.|++++|++.|.+.....- -+...|..+..+|.+.|++++|.+.+.+....    .|+ ...|..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna  584 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA  584 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence            345566666666677777777777766654321 13556666667777777777777777766542    333 345666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +..+|.+.|++++|.+.|+...+.+ +.+...|..+...+...|++++|..+.
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf  637 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY  637 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            6666777777777777777776665 445666667777777777777776653

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.3e-08  Score=79.19  Aligned_cols=107  Identities=31%  Similarity=0.501  Sum_probs=96.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      ..+..+...|+-+++.++|..|+..|.+.|+..-.    ++..|.|+|.|.+..|+|..|+..+.+++.++|.+..++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            34778899999999999999999999999998543    35789999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      =|.|+..+.++.+|...++..+.++-+...+
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999988876655443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.89  E-value=2.6e-08  Score=83.12  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ++++...++.++...++-.+|+..+.++++..|.+...+..-+..+...++++.|+...++++...|+....|+.|+.+|
T Consensus       199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y  278 (395)
T PF09295_consen  199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY  278 (395)
T ss_pred             CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            35567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      ...|+++.|+..+..+--..+.+...
T Consensus       279 i~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  279 IQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HhcCCHHHHHHHHhcCcCCCCccchh
Confidence            99999999998887665443333333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.88  E-value=1e-07  Score=77.22  Aligned_cols=124  Identities=21%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC----C
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQ----W   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~----~   74 (268)
                      ++.+..-|+.+...|+|++|.+.|.++....-  +    -+..+...+.++.+. ++++|+.+|++++.+-  ..    -
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            45566778888888999999999999976532  1    245677778887666 9999999999999862  12    2


Q ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           75 EKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        75 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~--~----~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..++..+|.+|... |++++|++.|++++++...  .    ...+..++.++...+++++|.++
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~  177 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI  177 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56788999999998 9999999999999987322  1    34667788888888888888665

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.87  E-value=4.9e-07  Score=84.88  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRK   81 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   81 (268)
                      ...+..+...+.+.|++++|.+.+.+....    .| +...|..+..+|.+.|++++|.+.|+++.+.+ +.+...|..+
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL  620 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA  620 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence            457778888888999999999999988753    44 45678888888999999999999999988876 4567788888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ...|.+.|++++|+..|++..+.  .|+ ...+..+...+...|+.++|.++.
T Consensus       621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        621 VNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence            88999999999999999988875  454 567777778888888888887664

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.87  E-value=8.1e-09  Score=82.26  Aligned_cols=207  Identities=6%  Similarity=-0.053  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      +-..|.-|+++|+|++||.||.+++..+|.|+..+.++|.+|.+.+.|..|...+..++.++.....+|.+.+.....+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH-HHHHHHHHhhhhhh-hchhH-HHHHhhhhhhhH
Q 024419          124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV-ETMETAVKSWHETS-KVDAK-VYFLLDKEKTDT  200 (268)
Q Consensus       124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~-~~~~~-~~~~~~~~~~a~  200 (268)
                      ...+|.+-.+  ..+..-+....+.. ........ ....++.... | +..|...--..+ ...+. .+...|.++.++
T Consensus       180 ~~~EAKkD~E--~vL~LEP~~~ELkK-~~a~i~Sl-~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i  254 (536)
T KOG4648|consen  180 NNMEAKKDCE--TVLALEPKNIELKK-SLARINSL-RERKIATKSTPG-FTPARQGMIQILPIKKPGYKFSKKAMRSVPV  254 (536)
T ss_pred             hHHHHHHhHH--HHHhhCcccHHHHH-HHHHhcch-HhhhHHhhcCCC-CCccccchhhhccccCcchhhhhhhccccce
Confidence            8888754321  11111111111110 00001111 0000100000 1 001111111112 11122 355667888888


Q ss_pred             hhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccccccccccccccc
Q 024419          201 EKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVYKPICLER  260 (268)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~~~~~~~~  260 (268)
                      .+|.+-+.-..+...-+.....++.+..|  ++....+++ ..+|.    |+.-+.|.|-++
T Consensus       255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~-~~~~s----~~~~~s~~~~A~  311 (536)
T KOG4648|consen  255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKT-NPKPT----PMPDTSGPPKAE  311 (536)
T ss_pred             eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhc-CCCCC----cCcccCCCchhH
Confidence            77765555432222122235556666666  888888888 77776    344455665554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.87  E-value=5.1e-08  Score=84.79  Aligned_cols=106  Identities=15%  Similarity=0.071  Sum_probs=90.5

Q ss_pred             hHhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419            4 EAEEMSLKDKGNEFFKA--------GNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   73 (268)
                      |+.+.++-.++.++...        ++...+.+...+++..  +|.++.++.-+|..+...|++++|...+++++.++| 
T Consensus       373 P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-  451 (517)
T PRK10153        373 PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-  451 (517)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Confidence            66677777766666443        2345667777776664  788889999999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      +..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus       452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            5889999999999999999999999999999999885

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=4.8e-06  Score=69.45  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...|...|.--..++++..|...|++||..+..+..+|...+.+-++......|...+.+|+.+-|.--..|+.....-.
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44566777777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+|+..-|.+.|++-++..|+ ..+|...-......+..+.|..+.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IY  197 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIY  197 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999996 455655556666666777776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=3.7e-07  Score=73.35  Aligned_cols=177  Identities=15%  Similarity=0.178  Sum_probs=124.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~   93 (268)
                      ..+....+|+.|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|.-+...+..+.+.+.++|.|++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            346778899999999999988766544 6778899999999999999999999998777788999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHH
Q 024419           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME  173 (268)
Q Consensus        94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (268)
                      |.....+    .|+++-..+.+-.+....++.++-..+.                ..+.... .-.....-++++.--|.
T Consensus       110 A~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh----------------~~LqD~~-EdqLSLAsvhYmR~HYQ  168 (557)
T KOG3785|consen  110 AKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFH----------------SSLQDTL-EDQLSLASVHYMRMHYQ  168 (557)
T ss_pred             HHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHH----------------HHHhhhH-HHHHhHHHHHHHHHHHH
Confidence            9766554    5777777666666666666655543331                1111001 11122333466778889


Q ss_pred             HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      +|+..|.+.+.-+|.          +|+.+.=++-+-+...-.+.-.|+
T Consensus       169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence            999999998887876          244444444444444444444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.83  E-value=3e-07  Score=74.29  Aligned_cols=120  Identities=13%  Similarity=-0.047  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      +.+.......++...++++.|.+.++.+.+.++++.-+...-|++....|  ++.+|.-.|+......|..+..+..+|.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            45666667778888889999998888888888777666666666666655  5888888888887777788888888889


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      ++..+|+|++|.+.+++++..+|++++.+.++..+....|..
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999988998888888888887777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.82  E-value=2.7e-07  Score=70.90  Aligned_cols=125  Identities=19%  Similarity=0.229  Sum_probs=99.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHh
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLV-----------KLNKALADAETTIS   69 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~   69 (268)
                      |--..+.+.+|.+++..|+|++|+..+++.+...|++.   .+++.+|.+++.+.           ...+|+..|+..+.
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999875   68999999987653           24589999999999


Q ss_pred             hCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHh
Q 024419           70 LNPQWEKG-----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        70 ~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a  128 (268)
                      ..|+...+                 -+..|..|.+.|.|..|+.-++.+++..|+.+   +++..+...+..+|..+.+
T Consensus       119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            99986321                 24578889999999999999999999999985   4677777888877777644

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=5.2e-08  Score=76.39  Aligned_cols=179  Identities=13%  Similarity=0.162  Sum_probs=129.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      ..+....+|.+||+++..-.+..|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+.+.+|
T Consensus        18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA   97 (459)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence            44578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhh-hhcCchhhhHHHHHHHHHHHH
Q 024419           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS-EKYGAEECWKHVFSFVVETME  173 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (268)
                      +.+......    ++..+...-++       +.|+....  .++   +....+...+. ..-.......+.+.+..+.++
T Consensus        98 LrV~~~~~D----~~~L~~~~lqL-------qaAIkYse--~Dl---~g~rsLveQlp~en~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   98 LRVAFLLLD----NPALHSRVLQL-------QAAIKYSE--GDL---PGSRSLVEQLPSENEADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHHHHhcC----CHHHHHHHHHH-------HHHHhccc--ccC---cchHHHHHhccCCCccchhccchheeeccccHH
Confidence            877766542    33333333222       22222210  001   11111111121 233344555666677788999


Q ss_pred             HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC
Q 024419          174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~  209 (268)
                      .|++.|..+++...-          +++..+++..|++.-...++.
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            999999888766532          466788888888887777664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.4e-06  Score=70.13  Aligned_cols=125  Identities=20%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH--------------HhhCC
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT--------------ISLNP   72 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a--------------l~~~p   72 (268)
                      ...-..+|.+++..|+|++|+..|.-+.+.+.-++..+.++|.|++-+|.|.+|...-.++              .+++.
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            3456778999999999999999999999988888899999999999999998887655444              22221


Q ss_pred             C------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           73 Q------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        73 ~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .            ..+-...+|.+++..-.|++|++.|++++.-+|+.......++.++.++.-++-+.++
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev  207 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV  207 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence            1            1223355677777777888888888888888888777777777777776666555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.78  E-value=8.8e-07  Score=69.87  Aligned_cols=127  Identities=13%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcC---------------C---hHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLV---------------K---LNKALAD   63 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~---------------~---~~~A~~~   63 (268)
                      .-..+.+.+|.+++..++|++|+..+++.++.+|+++   .+++.+|.++...+               +   ..+|+..
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~  146 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD  146 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence            3345678999999999999999999999999999874   67899999875554               1   2578899


Q ss_pred             HHHHHhhCCCCH---HH--------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q 024419           64 AETTISLNPQWE---KG--------------YFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAK  123 (268)
Q Consensus        64 ~~~al~~~p~~~---~~--------------~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~  123 (268)
                      |++.++..|+..   ++              -+..|..|.+.|.|..|+.-++.+++..|+.   ++++..+...+..+|
T Consensus       147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg  226 (243)
T PRK10866        147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ  226 (243)
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence            999999999853   22              2446778999999999999999999999876   567888888888888


Q ss_pred             HHHHhHHH
Q 024419          124 DKKRAQEV  131 (268)
Q Consensus       124 ~~~~a~~~  131 (268)
                      ..++|...
T Consensus       227 ~~~~a~~~  234 (243)
T PRK10866        227 LNAQADKV  234 (243)
T ss_pred             ChHHHHHH
Confidence            88888654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.78  E-value=1.2e-07  Score=82.10  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      .+++.+|.+|...|++++|++..+++|...|..++.|+..|.++...|++.+|.+.++.+-.+|+.+-.+....+.....
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHH
Q 024419          122 AKDKKRAQEVE  132 (268)
Q Consensus       122 ~~~~~~a~~~~  132 (268)
                      .|+.++|.+..
T Consensus       275 a~~~e~A~~~~  285 (517)
T PF12569_consen  275 AGRIEEAEKTA  285 (517)
T ss_pred             CCCHHHHHHHH
Confidence            99999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.77  E-value=3.6e-06  Score=65.13  Aligned_cols=106  Identities=23%  Similarity=0.232  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF   79 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~   79 (268)
                      -+..++..|...++.|+|++|+..|+.+....|.+   ..+...++.++++.+++++|+...++-+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            36688999999999999999999999999998876   47888999999999999999999999999998764   5677


Q ss_pred             HHHHHHHHcc--------CHHHHHHHHHHHHhhCCCCHHH
Q 024419           80 RKGCILEAME--------QYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        80 ~la~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      ..|.+++..-        -...|+..|+..+...|+..-+
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            7888876542        2356788899999999987543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=5.8e-07  Score=76.46  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=122.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|++..++...--++.+.++|++|+...+.-.... .+....+..+.|.+++++.++|+.+++   ..++.........|
T Consensus        42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~A  117 (652)
T KOG2376|consen   42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRA  117 (652)
T ss_pred             CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHH
Confidence            47788888889999999999999995443322211 122333789999999999999999998   55666777888889


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC-------------------------------HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS-------------------------------AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------------------~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .+++++|+|++|...|+..++.+.++                               .+.+++.+-++...|++.+|+++
T Consensus       118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el  197 (652)
T KOG2376|consen  118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL  197 (652)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence            99999999999999999986554433                               23455666666667788888776


Q ss_pred             Hhhhh--hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          132 ENIRS--NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       132 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .....  ..+....-.....++......+......+...+|+..+|.+.|...+..+|.
T Consensus       198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence            43110  0000000000111222233334444555667789999999999988877764

>PLN03077 Protein ECB2; Provisional

Probab=98.72  E-value=1.1e-06  Score=82.11  Aligned_cols=222  Identities=9%  Similarity=-0.050  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHH--------
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYF--------   79 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~--------   79 (268)
                      .+..+...|.+.|++++|.+.|++..+   .+...|..+...|.+.|++++|+..|++.+.. .|+......        
T Consensus       426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~  502 (857)
T PLN03077        426 VANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI  502 (857)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence            445556667777777777777766432   34556777777777777777777777777643 333221111        


Q ss_pred             --------------------------HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419           80 --------------------------RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus        80 --------------------------~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                                                .+-..|.+.|+.++|...|+..    +.+...|..+...+...|+.++|.++..
T Consensus       503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~  578 (857)
T PLN03077        503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFN  578 (857)
T ss_pred             chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence                                      1224556666777776666664    4456667777777777777777766532


Q ss_pred             hhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhh---hchhH---------HHHHhhhhhhhHh
Q 024419          134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAK---------VYFLLDKEKTDTE  201 (268)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~---------~~~~~~~~~~a~~  201 (268)
                      ........+....+..-+            ......+..++|...|+...   .+.|+         .+...|+.++|.+
T Consensus       579 ~M~~~g~~Pd~~T~~~ll------------~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~  646 (857)
T PLN03077        579 RMVESGVNPDEVTFISLL------------CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN  646 (857)
T ss_pred             HHHHcCCCCCcccHHHHH------------HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence            111111111111111000            01112366677777776654   23443         3445677888877


Q ss_pred             hhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419          202 KYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ  251 (268)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~  251 (268)
                      .++.. .+.|+......+-..+...+..  +....++.+ +++|++...|..
T Consensus       647 ~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~-~l~p~~~~~y~l  696 (857)
T PLN03077        647 FINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIF-ELDPNSVGYYIL  696 (857)
T ss_pred             HHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCcchHHH
Confidence            77654 2344321111111111222222  667777888 888887766543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.69  E-value=1.4e-06  Score=79.54  Aligned_cols=236  Identities=8%  Similarity=-0.028  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCIL   85 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~   85 (268)
                      ..+..+...|.+.|++++|...|++.   .+.+..+|..+...|.+.|++++|++.|++....  .| +...+..+..++
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~  335 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF  335 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            34566778899999999999999875   4567889999999999999999999999998764  34 456788889999


Q ss_pred             HHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           86 EAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      ...|++++|.+.+..+++.. +.+..++..+...|...|+.++|..+.......+...-  ......+...+....+...
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~--n~lI~~y~~~G~~~~A~~l  413 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW--NALIAGYGNHGRGTKAVEM  413 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH--HHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999876 66778888899999999999999887542211110000  0000011112222222221


Q ss_pred             HHH---------------------HHHHHHHHHHhhhhhhh---chhH---------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          165 FSF---------------------VVETMETAVKSWHETSK---VDAK---------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       165 ~~~---------------------~~~~~~~A~~~~~~~~~---~~~~---------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                      +..                     ..+..++|.+.|+...+   +.|+         .+...|+.++|.+.++..- ..|
T Consensus       414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p  492 (697)
T PLN03081        414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP  492 (697)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC
Confidence            111                     13456666666665532   2343         3445567777766655431 223


Q ss_pred             cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419          212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ  251 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~  251 (268)
                      ...........+...+++  +...+++.+ .++|++...|..
T Consensus       493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y~~  533 (697)
T PLN03081        493 TVNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNYVV  533 (697)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcchHH
Confidence            221111122222233333  888899999 999998766643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.69  E-value=8.4e-07  Score=71.84  Aligned_cols=124  Identities=14%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCC--CC---
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--SN----PTLFSNRAAAFLHL-VKLNKALADAETTISLNP--QW---   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~---   74 (268)
                      +..+...|.++ ...++++|+++|++|+.+.-  ++    +.++..+|.+|... |++++|++.|++|+.+-.  +.   
T Consensus        75 a~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen   75 AKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence            44555555554 55599999999999998732  22    56889999999999 999999999999998722  11   


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHHHHHHHhHHH
Q 024419           75 -EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----A---EVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~---~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                       ..++..+|.++...|+|++|++.|+++....-++    .   ..+...+.++...|+...|...
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~  218 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA  218 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence             4677899999999999999999999998754322    1   2344555666666777666544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.64  E-value=1.1e-07  Score=53.77  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      ++..+|.+|...|++++|+..|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444444444444444444444444444444444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.63  E-value=1.1e-07  Score=53.72  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      +.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35789999999999999999999999999999999999998753

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.7e-06  Score=68.08  Aligned_cols=129  Identities=19%  Similarity=0.207  Sum_probs=109.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH----------h---
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----------S---   69 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------~---   69 (268)
                      +|.+--.+..+|.+|+..++|..|.++|++.-.+.|......+..+..+++.+.+..|+.......          +   
T Consensus        40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa  119 (459)
T KOG4340|consen   40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA  119 (459)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            566666889999999999999999999999999999998888888888888888877766443222          1   


Q ss_pred             -----------------hCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           70 -----------------LNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        70 -----------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                                       .-|  +.+....+.|.+.++.|+++.|++-|+.+++..--++-.-++++.++...+++..|..
T Consensus       120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk  199 (459)
T KOG4340|consen  120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK  199 (459)
T ss_pred             HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence                             124  3567788999999999999999999999999999999999999999999999999976


Q ss_pred             H
Q 024419          131 V  131 (268)
Q Consensus       131 ~  131 (268)
                      .
T Consensus       200 ~  200 (459)
T KOG4340|consen  200 H  200 (459)
T ss_pred             H
Confidence            5

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.59  E-value=3.4e-06  Score=61.68  Aligned_cols=69  Identities=22%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           57 LNKALADAETTISLNPQWEKGYFRKGCILEAME----------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      |+.|.+.++.....||.+++.+++.|.++..+.          .+++|+.-|+.+|.++|+...++..+|.++...+..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            678999999999999999999999999988763          457899999999999999999999999998777643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1.6e-06  Score=64.36  Aligned_cols=100  Identities=10%  Similarity=0.157  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      .-+-.-|.-++..|+|.+|.+-|..||.+.|..     ...|.+.|.++.+++.++.|++.+.++++++|.+..++.+.+
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            334556888999999999999999999999975     356888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhhhHHHhhh
Q 024419          117 RVSQLAKDKKRAQEVENIRSNVDMVQH  143 (268)
Q Consensus       117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~  143 (268)
                      .+|..+..++.|.+  .+++.....+.
T Consensus       176 eayek~ek~eeale--DyKki~E~dPs  200 (271)
T KOG4234|consen  176 EAYEKMEKYEEALE--DYKKILESDPS  200 (271)
T ss_pred             HHHHhhhhHHHHHH--HHHHHHHhCcc
Confidence            99999999998843  33444444333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.56  E-value=8.1e-08  Score=50.79  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           64 AETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        64 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.55  E-value=4.7e-08  Score=77.87  Aligned_cols=98  Identities=29%  Similarity=0.461  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      -....+...+..|.++.|++.|..++.++|.+...+..++.++++++++..|+..|..++.++|+....|-..|.+...+
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            34456667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCC
Q 024419           89 EQYDDALSAFQTALQYNP  106 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p  106 (268)
                      |++++|...+..+.+++=
T Consensus       196 g~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hchHHHHHHHHHHHhccc
Confidence            999999999999998864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.54  E-value=1.9e-06  Score=67.29  Aligned_cols=88  Identities=19%  Similarity=0.180  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKR  117 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~  117 (268)
                      .++.|.-++..|+|..|...|..-++.-|+.   +.++|.||.+++.+|+|++|...|..+.+-.|++   ++++..||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999999985   6899999999999999999999999999988876   688999999


Q ss_pred             HHHHHHHHHHhHHH
Q 024419          118 VSQLAKDKKRAQEV  131 (268)
Q Consensus       118 ~~~~~~~~~~a~~~  131 (268)
                      +...+++.++|...
T Consensus       224 ~~~~l~~~d~A~at  237 (262)
T COG1729         224 SLGRLGNTDEACAT  237 (262)
T ss_pred             HHHHhcCHHHHHHH
Confidence            99999999999765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.52  E-value=8e-06  Score=60.02  Aligned_cols=121  Identities=21%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCIL   85 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~   85 (268)
                      .-+.+|+.+...|++.+|...|++++. +.-.+...+..++.+.+..+++..|...+++..+.+|.  .++....+|.++
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            446688888999999999999999886 35577888999999999999999999999999999886  477888889999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      ...|++.+|...|+.++...|+- .+....+..+..+|...++..
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHH
Confidence            99999999999999999988864 444445666666776655543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.51  E-value=2.5e-05  Score=60.16  Aligned_cols=194  Identities=16%  Similarity=0.170  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK--QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC-   83 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-   83 (268)
                      .......+..+...+++..++..+...+.  ..+.....+...|.++...+++..++..+.+++..++.........+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            45667788888888888888888888887  677888888888888888888888888888888887777555666666 


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419           84 ILEAMEQYDDALSAFQTALQYNP---QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (268)
                      ++...|+++.|...+.+++..+|   .........+..+...+..+.+.....  ......+..          ......
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~----------~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE--KALKLNPDD----------DAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH--HHHhhCccc----------chHHHH
Confidence            78888889888888888888777   345555555555556666666654421  111111100          112222


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          161 WKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       161 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      ..+......+.++.++..+..++...|.          .+...+....+...+..++...+.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            3333344444667777777776666653          233555677777777777777664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.51  E-value=6.1e-05  Score=58.00  Aligned_cols=223  Identities=20%  Similarity=0.250  Sum_probs=155.6

Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Q 024419           11 KDKGNEFFK-AGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFRKGCIL   85 (268)
Q Consensus        11 ~~~g~~~~~-~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~   85 (268)
                      ...+..... .+.+..+...+...+...+.  ........+.++...+++..+...+...+.  ..+.....+...|..+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          26 LEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence            333333333 57889999999999999887  488899999999999999999999999997  7888899999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      ...+++..++..+.+++...+.........+. ++...+.++.+.......  +...+.        ...........+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~--------~~~~~~~~~~~~~  175 (291)
T COG0457         106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA--LELDPE--------LNELAEALLALGA  175 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC--------ccchHHHHHHhhh
Confidence            99999999999999999988887665555555 777888888887664322  111110        0000011111111


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCccc-cCccchhHHHHHHHHH--H
Q 024419          165 FSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKAF-ESPHTHGSCFQFLRQY--A  230 (268)
Q Consensus       165 ~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--a  230 (268)
                      .....+.++.++..+.+++...+.           .+...++...+...+..++...+.. ......+..+...+.+  +
T Consensus       176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
T COG0457         176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA  255 (291)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence            133455666677776666555554           3556667889999999999987751 1112233344433334  8


Q ss_pred             HHHHHHHhhhhCCC
Q 024419          231 DDSFSSAACLVAPK  244 (268)
Q Consensus       231 ~~~~~ka~~~~~p~  244 (268)
                      ...+.+++ ..+|.
T Consensus       256 ~~~~~~~~-~~~~~  268 (291)
T COG0457         256 LEALEKAL-ELDPD  268 (291)
T ss_pred             HHHHHHHH-HhCcc
Confidence            88999999 88886

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.49  E-value=1.2e-06  Score=70.80  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419           11 KDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        11 ~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      ...+.+.+..|  ++.+|.-.|++..+..|.++..+..+|.|++.+|+|++|.+.+.+++..+|++++++.+++.+...+
T Consensus       169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~  248 (290)
T PF04733_consen  169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL  248 (290)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence            33444555555  6999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             cCH-HHHHHHHHHHHhhCCCCHHHH
Q 024419           89 EQY-DDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        89 ~~~-~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      |+. +.+.+.+.+....+|+++.+-
T Consensus       249 gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  249 GKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             T-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             CCChhHHHHHHHHHHHhCCCChHHH
Confidence            998 566778888888999987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.48  E-value=3.2e-07  Score=48.66  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   73 (268)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03077 Protein ECB2; Provisional

Probab=98.47  E-value=2.3e-05  Score=73.48  Aligned_cols=213  Identities=8%  Similarity=0.005  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHH----------------------------------HHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSNPTLF----------------------------------SNRAAA   50 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~----------------------------------~~~a~~   50 (268)
                      +...|..+...+...|++++|+..|++.+.. .|+.....                                  ..+-..
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~  533 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL  533 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence            3456778888899999999999999998754 34432222                                  123367


Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      |.+.|+.++|...|+..    +.+...|..+...|...|+.++|++.|++..+.  .|+... +..+-..+...|..++|
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHH
Confidence            88899999999999886    567789999999999999999999999998874  565544 44444556677888888


Q ss_pred             HHHHhhhh-hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhh
Q 024419          129 QEVENIRS-NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKT  198 (268)
Q Consensus       129 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~  198 (268)
                      .++..... .....+....+            ...-....-.|++++|.+.+++. .+.|+         .+..-++.+.
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y------------~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~  675 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHY------------ACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVEL  675 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHH------------HHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHH
Confidence            77643211 11111111111            11111122346677777777764 23343         2345567777


Q ss_pred             hHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHH
Q 024419          199 DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS  236 (268)
Q Consensus       199 a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~k  236 (268)
                      +....+++++++|....... .+..|...|++  +.+..+.
T Consensus       676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence            77778888898886533332 45555556655  4444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.46  E-value=2e-07  Score=49.30  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.7

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH
Q 024419           29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA   62 (268)
Q Consensus        29 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~   62 (268)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.44  E-value=7.3e-05  Score=55.11  Aligned_cols=118  Identities=12%  Similarity=0.058  Sum_probs=99.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNPQWEKGYFRKGCILEAMEQY   91 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~   91 (268)
                      .+....+.=|.+.+.....+.+...|+. .-.+.+|......|++.+|...|++++. +..+++..+..++...+..+++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            3444455557777777777777777754 4567899999999999999999999986 5667889999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           92 DDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        92 ~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..|...+++..+.+|..  +.....++..+..+|.+.+|+..
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa  182 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA  182 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence            99999999999999864  77888899999999999888654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.41  E-value=7e-06  Score=56.68  Aligned_cols=88  Identities=17%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRV  118 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~  118 (268)
                      .+-.-|.+....|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++.+++++++.-+.    ..++.+.|.+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            344568888899999999999999999999999999999999999999999999999999997544    3478888899


Q ss_pred             HHHHHHHHHhHH
Q 024419          119 SQLAKDKKRAQE  130 (268)
Q Consensus       119 ~~~~~~~~~a~~  130 (268)
                      +...|+-+.|..
T Consensus       125 yRl~g~dd~AR~  136 (175)
T KOG4555|consen  125 YRLLGNDDAARA  136 (175)
T ss_pred             HHHhCchHHHHH
Confidence            999988887743

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.40  E-value=6.4e-07  Score=47.48  Aligned_cols=34  Identities=26%  Similarity=0.594  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.39  E-value=1.1e-06  Score=46.57  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   73 (268)
                      +|+.+|.+++.+|++++|+.+|++++.++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.6e-05  Score=63.66  Aligned_cols=122  Identities=19%  Similarity=0.088  Sum_probs=109.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQW---EKGYFRKGCILE   86 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~   86 (268)
                      ...+-.++..|++.+|...+++.++-.|++.-++..--.+++-+|+...-...+++.+-. +|+-   ..++-.++-++.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            345556778899999999999999999999999998889999999999999999999987 7776   556667788888


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ..|-|++|.+.-+++++++|.+..+...++.++...+++.++.++.
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence            9999999999999999999999999999999999999999998774

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.38  E-value=4.5e-05  Score=71.93  Aligned_cols=56  Identities=9%  Similarity=0.011  Sum_probs=33.6

Q ss_pred             HHHHhhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          189 VYFLLDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      ++...|+..+|...+..++..........       ..+..+...|+.  |...+.+|+ .+....
T Consensus       700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al-~la~~~  764 (903)
T PRK04841        700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL-KLANRT  764 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhCcc
Confidence            35566788888888888777522211111       134455555555  888888888 665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1e-06  Score=67.00  Aligned_cols=89  Identities=13%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      +-.-|.+++....|..|+.+|.++|.++|..+..|.+.+.||.+..+++.......++++++|+....++.+|.......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34457788888999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhHHHH
Q 024419          124 DKKRAQEVE  132 (268)
Q Consensus       124 ~~~~a~~~~  132 (268)
                      .++.|+...
T Consensus        93 ~~~eaI~~L  101 (284)
T KOG4642|consen   93 GYDEAIKVL  101 (284)
T ss_pred             cccHHHHHH
Confidence            888887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.35  E-value=9.4e-05  Score=69.80  Aligned_cols=227  Identities=12%  Similarity=-0.000  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E   75 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   75 (268)
                      ......+|..+...|++++|...+++++...|..     ..+...+|.++...|++++|...+++++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3445567888899999999999999999865543     2456788999999999999999999999764321      3


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF  147 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (268)
                      .++..+|.++...|+++.|...+++++.+...        ....+..++.++...|++++|.......  ..........
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a--l~~~~~~~~~  609 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG--LEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh--HHhhhccCch
Confidence            46678899999999999999999999886321        2234557788888889999987653211  1111000000


Q ss_pred             HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCC
Q 024419          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVD  210 (268)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~  210 (268)
                            .........+.+....++++.|...+..+..+.+.                 .+...|+.+.+...........
T Consensus       610 ------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~  683 (903)
T PRK04841        610 ------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE  683 (903)
T ss_pred             ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence                  00011222344455566677776666665443211                 1223456666665554443321


Q ss_pred             cccc-C----ccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419          211 KAFE-S----PHTHGSCFQFLRQY--ADDSFSSAACLVA  242 (268)
Q Consensus       211 ~~~~-~----~~~~~~~~~~~~~~--a~~~~~ka~~~~~  242 (268)
                      +... .    ....+.++...+++  |...+++++ ...
T Consensus       684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al-~~~  721 (903)
T PRK04841        684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELN-ENA  721 (903)
T ss_pred             CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHH
Confidence            1110 0    01234445555666  888899988 653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=1.5e-06  Score=45.97  Aligned_cols=34  Identities=21%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      +.+++.+|.++..+|++++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.33  E-value=2.7e-05  Score=55.16  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VS  112 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~  112 (268)
                      ..+..++.-|...++.|+|++|++.|+......|..   ..+.+.+|.+|+..+++++|+..+++-++++|+++.   ++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356789999999999999999999999999998864   588999999999999999999999999999999864   55


Q ss_pred             HHHHHHHH
Q 024419          113 RKIKRVSQ  120 (268)
Q Consensus       113 ~~l~~~~~  120 (268)
                      +..|.++.
T Consensus        88 Y~~gL~~~   95 (142)
T PF13512_consen   88 YMRGLSYY   95 (142)
T ss_pred             HHHHHHHH
Confidence            55555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=3.9e-05  Score=57.89  Aligned_cols=172  Identities=12%  Similarity=0.028  Sum_probs=113.5

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|+.++++.-+|-.+...|+|+.|.+.|+..+++||+...++.++|..++--|++.-|.+.+.+--+.||+++---..+
T Consensus        94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785          94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999987322222


Q ss_pred             HHHHHHccCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419           82 GCILEAMEQYDDALS-AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (268)
Q Consensus        82 a~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (268)
                      - +-...-+..+|.. ..+++-..+.+ ..-|...+-.   +|+...-.-............       .+...+...+.
T Consensus       174 Y-l~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~e~l~~~~~a~a~~n~-------~~Ae~LTEtyF  241 (297)
T COG4785         174 Y-LNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISEETLMERLKADATDNT-------SLAEHLTETYF  241 (297)
T ss_pred             H-HHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccHHHHHHHHHhhccchH-------HHHHHHHHHHH
Confidence            1 1223345666654 44455444432 2222222221   122111101111111111111       12233445667


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419          161 WKHVFSFVVETMETAVKSWHETSKV  185 (268)
Q Consensus       161 ~~~~~~~~~~~~~~A~~~~~~~~~~  185 (268)
                      +.+..+...|..++|...|+-++..
T Consensus       242 YL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         242 YLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHH
Confidence            7777788888888888888766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.31  E-value=2.8e-05  Score=62.99  Aligned_cols=120  Identities=17%  Similarity=0.178  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---------   73 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------   73 (268)
                      ....+|+.+...+.++++++.|+.|++...++      ..++..+|..+....++++|.-+..+|..+-..         
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            44556777777777777888877777763322      256667777777777888777777777765321         


Q ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHh
Q 024419           74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        74 -~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                       ...+.+.++..+...|+.-+|.++.+.+.++.      |-......-++.+|...|+.+.|
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence             12455667777777777777777777776653      22234455566666666665554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.27  E-value=0.00083  Score=55.17  Aligned_cols=239  Identities=11%  Similarity=0.039  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      -++..-+...-..|+++.|-.+..++-+..++ ...+...++......|++..|.....+++...|.++.+..-.-.+|.
T Consensus       119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~  198 (400)
T COG3071         119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI  198 (400)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            35566677778899999999999999998554 45688889999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH--HHHHHHHHHhHH----HHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAE---VSRKIKRV--SQLAKDKKRAQE----VENIRSNVDMVQHLDEFKSEMSEKYGA  157 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~--~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
                      ..|++........+.-+-.--+.+   -+.+-+..  .....+-..+..    ...........+.+..-...-...++.
T Consensus       199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~  278 (400)
T COG3071         199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD  278 (400)
T ss_pred             HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence            999999888777776654332211   11111111  011111111111    111122222222222222222222232


Q ss_pred             hhhhHHHHHHH-----------------HHHH---HHHHHhhhhhhhchhH-------HHHHhhhhhhhHhhhhHHhcCC
Q 024419          158 EECWKHVFSFV-----------------VETM---ETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVD  210 (268)
Q Consensus       158 ~~~~~~~~~~~-----------------~~~~---~~A~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~  210 (268)
                      ...+..++...                 -++.   .++++.+-+-..-+|.       .++.-+.+.+|.++++.++...
T Consensus       279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~  358 (400)
T COG3071         279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR  358 (400)
T ss_pred             hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            22222221111                 1222   2233333333333343       3445567889999999999998


Q ss_pred             ccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          211 KAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      |+.......+..+..+|+-  |...++.++...-+.+.
T Consensus       359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            8775555688888888855  99999999834344443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.26  E-value=5.1e-05  Score=61.35  Aligned_cols=124  Identities=13%  Similarity=0.062  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      +|....+.....+..+.|...|.+|++..+.+..+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777888888889999999999997777788999999999777 5666669999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++.+.|...|++++..-|...   .+|..........|+.+....+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999877665   57777777777777777665553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.25  E-value=7.9e-05  Score=54.05  Aligned_cols=94  Identities=20%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      .+...|......++.+.++..+.+++.+....                      ..+...++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44556777788899999999999999985332                      13344456666667777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      ++..+|.+-.+|..+-.++...|+...|+..|+++.
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            777777777777777777777777777777766654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.9e-05  Score=58.37  Aligned_cols=121  Identities=21%  Similarity=0.222  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHH-HH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE--KGYFR-KG   82 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~-la   82 (268)
                      ..+.-+..+......|++.+|...+..++...|++..+...++.||...|+.+.|...+...    |...  +.+.. .+
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a  208 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQA  208 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHH
Confidence            34456677888999999999999999999999999999999999999999998887766442    3221  11111 11


Q ss_pred             --HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           83 --CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        83 --~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                        ..+.+.....+ +..+++.+..+|++..+-..++..+...|+.+.|.+.
T Consensus       209 ~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~  258 (304)
T COG3118         209 QIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH  258 (304)
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence              22222222222 2445666777788888888888887777777777654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=0.00027  Score=59.39  Aligned_cols=196  Identities=14%  Similarity=0.107  Sum_probs=143.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           33 AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        33 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      .+..+-.+...|...|.--..++++..|.+.|++||..+..+...|...+.+-.+.+....|...+.+++.+-|..-..|
T Consensus        65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW  144 (677)
T KOG1915|consen   65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence            34445556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH--HHHHHHHHHHHHHHhhhhhhhchhHH-
Q 024419          113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHETSKVDAKV-  189 (268)
Q Consensus       113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~-  189 (268)
                      +........+|+...|..+..      ...       ...+   ....+..  .+..--+..+.|...|++-+-.+|++ 
T Consensus       145 yKY~ymEE~LgNi~gaRqife------rW~-------~w~P---~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~  208 (677)
T KOG1915|consen  145 YKYIYMEEMLGNIAGARQIFE------RWM-------EWEP---DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS  208 (677)
T ss_pred             HHHHHHHHHhcccHHHHHHHH------HHH-------cCCC---cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence            999888889999988876631      111       1111   1112222  23445677888999999998889972 


Q ss_pred             --------HHHhhhhhhhHhhhhHHhcCCccccCccchhHHH----HHHHHH--HHHHHHHHhhhhCCCC
Q 024419          190 --------YFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCF----QFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       190 --------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                              -..-|....+...|+.+++.-.+.......-.++    .....+  |...|.-|+ ..-|++
T Consensus       209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl-d~~pk~  277 (677)
T KOG1915|consen  209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL-DHIPKG  277 (677)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcc
Confidence                    1244778888889999988632211111111122    122233  777788888 777765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.17  E-value=0.00061  Score=59.34  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=80.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---   73 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---   73 (268)
                      +|.+.+.|..+..  +..|+..+-+..|.+|+.. +|..     ...|...|..|...|+.+.|...|+++++.+-.   
T Consensus       345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            4566666666544  4568889999999998864 6643     478999999999999999999999999987543   


Q ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        74 -~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                       -..+|...|..-....+++.|+...+++...
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v  454 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV  454 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence             2678999999989999999999999998755

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.16  E-value=6.9e-05  Score=60.78  Aligned_cols=125  Identities=14%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E   75 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   75 (268)
                      .+++.+++..+...-++.+++.+-.-.+......     ..++..+|.++..++.++++++.|++|+++...+      -
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            3567777777778788888888888877764433     3567779999999999999999999999874432      3


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----------AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .++..+|..+...+++++|.-+..++.++..+.          ..+++.++..+..+|..-.|.+.
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~  228 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMEC  228 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            578889999999999999999999988774322          34566777777788887777665

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.14  E-value=0.0012  Score=57.54  Aligned_cols=126  Identities=9%  Similarity=0.059  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----------   73 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------   73 (268)
                      .-|...|..|...|+.+.|...|+++++..-..    ..+|+.-|..-+...+++.|+++.+.|...-..          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            457889999999999999999999999985433    578999999999999999999999999865211          


Q ss_pred             --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419           74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus        74 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                              ...+|-.++......|-++.....|++++.+.--.|.+..+.+..+..-..++++.+..+
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                    245677788888888999999999999999988889999999988888777888866544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.10  E-value=0.0026  Score=49.63  Aligned_cols=72  Identities=17%  Similarity=0.122  Sum_probs=66.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      .+..|++-|...+..|++++|++.|+.+...+|..   ..+.+.++.++++.+++++|+...++-+.+.|+++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            46789999999999999999999999999998875   5789999999999999999999999999999988653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.09  E-value=0.00016  Score=61.10  Aligned_cols=121  Identities=9%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------------
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-----------------   73 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------------   73 (268)
                      ..+.....+..+.+.-++.-.+||+++|+.+.+|.-+|.-.  .....+|...|+++++....                 
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            34555667889999999999999999999999999887422  33456677777776654210                 


Q ss_pred             --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419           74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus        74 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                              .+.+..++|+|..+.|+.++|++.++..++.+|.  +..++..|..++..++.+.++..+..
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                    1345678999999999999999999999998875  56789999999999999998887743

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.08  E-value=0.00084  Score=55.74  Aligned_cols=117  Identities=14%  Similarity=-0.003  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH---cCChHHHHHHHHHH-HhhCCCCHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLH---LVKLNKALADAETT-ISLNPQWEKGY   78 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~   78 (268)
                      ++...++-..|...++|+.-+...+..-.+    -++...+.+.+|.++-+   .|+.++|+..+..+ ....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            445566667788888898888888887766    45567788888988888   89999999999884 44566778888


Q ss_pred             HHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           79 FRKGCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        79 ~~la~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      ..+|.+|...         ...++|+..|.++.+++|+. ..-.+++.++...|.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            8889888753         24678999999999998644 333344445444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=7.8e-05  Score=57.92  Aligned_cols=106  Identities=19%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----QD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK   76 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   76 (268)
                      +|.++.-...+|...++-|+.+.|..++++.-+    ++  .....+..+.+.+|.-.+++..|...|.+++..||.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            456677778889999999999999999985433    22  234567778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      +-.+.|.|+..+|+..+|++..+.++...|..
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            99999999999999999999999999999865

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.03  E-value=1.1e-05  Score=42.51  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNP   72 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   72 (268)
                      +|+.+|.+|..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00021  Score=55.66  Aligned_cols=123  Identities=13%  Similarity=0.125  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP------QWEKGYFRK   81 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l   81 (268)
                      ..+....++.-.|+|.-....+.+.++.+ |.++.....+|.+-++.|+.+.|...|+.+-+.+.      .+..++.+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44566778888899999999999999998 67888899999999999999999999996554322      345678888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +.+|.-.++|.+|...|.+++..||.++.+...-+.|....|+...|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~  308 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ  308 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999888665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.00  E-value=0.00022  Score=63.99  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      .-....+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+--+-.||..++++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34467789999999999999999999999999999999999999999887777777777888888889999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR  127 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~  127 (268)
                      ..+|++++..+|+ .+....+=.++...+.+.+
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 7777777677766666644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=3.4e-05  Score=65.34  Aligned_cols=107  Identities=27%  Similarity=0.309  Sum_probs=96.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      |..++.++..|+-.+..+....|+..|.++++.-|.....+.+++.++++.   |+.-.|+..+..++.+||....+|+.
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            456777888888888888999999999999999999999999999999875   67789999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      |+.++..++++.+|+++...+....|.+..
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999888888886544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.99  E-value=1.5e-05  Score=42.07  Aligned_cols=33  Identities=36%  Similarity=0.754  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      .+|+.+|.++..+|++++|++.|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999954

...

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00065  Score=54.58  Aligned_cols=91  Identities=11%  Similarity=0.127  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      +.-+-.-|+-|++-.+|..|+.+|.+.|+..   |+ ++..|.++|.+....|+|..|+....+++.++|.+..++.+-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            3456667999999999999999999999874   33 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHH
Q 024419          117 RVSQLAKDKKRAQEV  131 (268)
Q Consensus       117 ~~~~~~~~~~~a~~~  131 (268)
                      .++..++.+..|..+
T Consensus       161 kc~~eLe~~~~a~nw  175 (390)
T KOG0551|consen  161 KCLLELERFAEAVNW  175 (390)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999997777654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0042  Score=47.68  Aligned_cols=124  Identities=15%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQD----P--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E   75 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   75 (268)
                      +.+..-|+.+-..++|..|=..|-++-...    .  +.+..|...+.||.+. ++.+|+.++++++++-.+.      +
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aA  113 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAA  113 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334445555556667777777777765442    1  1256677777777555 8999999999999886543      3


Q ss_pred             HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           76 KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        76 ~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .-+..+|.+|..- .++++|+.+|+++-+.....      -..+...+......+++.+|+.+.
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy  177 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY  177 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466888888876 89999999999987764433      224555666666677888886653

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=5.6e-05  Score=63.51  Aligned_cols=119  Identities=15%  Similarity=0.097  Sum_probs=99.8

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh-h----
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA-IKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTIS-L----   70 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~----   70 (268)
                      +.+.+++.++...+..|+|.+|.+.+... +...|.        ...+|.++|.+++++|.|.-++..|.+|++ .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999987653 233333        335678999999999999999999999996 1    


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           71 ----NP---------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        71 ----~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                          .|         ...+..++.|..+...|+.-.|.++|.++......+|..|.+++.+-....
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence                22         235789999999999999999999999999999999999999999876543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00052  Score=53.52  Aligned_cols=120  Identities=13%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .++.-....++.+..+.+-|....++..+++.+.  .+..+|..+..    .+++..|.-.|+..-...|..+......+
T Consensus       137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A  214 (299)
T KOG3081|consen  137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA  214 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence            3445556677888889999999999999887543  34445554443    24688889999998887788888899999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      .|+..+|+|++|...++.+|..+|++++.+.++-.+-...|.-.++
T Consensus       215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence            9999999999999999999999999999999988887777766544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.87  E-value=1.1e-05  Score=64.70  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      .+..|+++.|++.|..+|.++|.....|...|.++..+++...|+..+..+++++|+...-+...+.....++.|.+|..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999888888888889999998876


Q ss_pred             HHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419          131 VENIRSNVDMVQHLDEFKSEMSEKYGAE  158 (268)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (268)
                      .+.....++..........++....+..
T Consensus       204 dl~~a~kld~dE~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  204 DLALACKLDYDEANSATLKEVFPNAGKI  231 (377)
T ss_pred             HHHHHHhccccHHHHHHHHHhccchhhh
Confidence            6543333444444444444444444433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.007  Score=46.87  Aligned_cols=170  Identities=18%  Similarity=0.094  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEK   76 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   76 (268)
                      ..+..-+..+...++|++|..++.+|.+-..++.      .++-..|.....+..+.++...|+++..+     .|+-+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            3445555666677899999999999997665553      34445677777889999999999999887     355444


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .-...+--.....+.++|+..|++++.+-...      .+.+...+.++...+.+++|-....  +......     ...
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l--Ke~~~~~-----~~~  184 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL--KEGVAAD-----KCD  184 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH--HhhhHHH-----HHh
Confidence            44455555567788999999999998775433      3455566667777777777643310  0000000     001


Q ss_pred             hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 024419          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSK  184 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  184 (268)
                      .+..........-++++...+|..|.++++..-.
T Consensus       185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            1111122233333455667788888888887543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00075  Score=52.64  Aligned_cols=118  Identities=10%  Similarity=0.064  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      -....-|.++...|++++|.....+     ..+.++...--.|+.++.+.+-|....+++..++.+..  +.+||.++..
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~  181 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVK  181 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHH
Confidence            3455567788899999999988766     23456666667788899999999999999998876643  3445544443


Q ss_pred             ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           88 ----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        88 ----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                          .+++.+|.-.|+..-+..|..+....+.+.+...++++++|+.+.
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence                356889999999999988888999999999999999999998764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0035  Score=48.11  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC-----
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHL-VKLNKALADAETTISLNPQW-----   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~-----   74 (268)
                      +-.-+..+...++..+.++|+.++++++++..+-++      .+..+|.+|... .++++||.+|+++-+.-...     
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            333444455556677999999999999998765443      345789888775 89999999999998753321     


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           75 -EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                       -..++..|..-...++|.+|+..|+++....-+|.-.
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence             2456667777788999999999999998877766544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00035  Score=53.83  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQ----------WEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      +.++...|+-+++.|+|.+|...|+.|+..        .|.          ....+.+.+.|+...|+|-+++++...+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            578889999999999999999999998743        343          34678899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419          103 QYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus       103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      ..+|.|..+++..+..+...-+..+|.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~  284 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAK  284 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence            999999999999999877665555553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.82  E-value=0.005  Score=50.81  Aligned_cols=226  Identities=15%  Similarity=0.050  Sum_probs=136.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCILEA   87 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~   87 (268)
                      ...|.+.--.|+-..|..+-.++-++-..+.  -++..-++.-.--|+++.|.+-|+-.+. +|.. .-.+..|-.--..
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            3445566667888888888888876654443  4455557778888999999999987765 4543 2223333334456


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF  167 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (268)
                      .|..+.|+.+-+++-.+.|.-+.++...-......|+|+.|+++............      ............-.....
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~------~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK------DVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch------hhHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999998888888888999999877432221111110      000001111111111122


Q ss_pred             HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--HHHH---H
Q 024419          168 VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR--QYAD---D  232 (268)
Q Consensus       168 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~---~  232 (268)
                      ...+...|...-..++++.|+          .++..|+..++-+..+.+-..+|    ++.....|...+  +-++   +
T Consensus       241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP----HP~ia~lY~~ar~gdta~dRlk  316 (531)
T COG3898         241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP----HPDIALLYVRARSGDTALDRLK  316 (531)
T ss_pred             hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC----ChHHHHHHHHhcCCCcHHHHHH
Confidence            233344455555556666665          46677777777777777777666    233444444433  1133   3


Q ss_pred             HHHHHhhhhCCCCccc
Q 024419          233 SFSSAACLVAPKSIIS  248 (268)
Q Consensus       233 ~~~ka~~~~~p~~~~~  248 (268)
                      ..++.. .+.|+|...
T Consensus       317 Ra~~L~-slk~nnaes  331 (531)
T COG3898         317 RAKKLE-SLKPNNAES  331 (531)
T ss_pred             HHHHHH-hcCccchHH
Confidence            333334 556666543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.74  E-value=0.0003  Score=60.57  Aligned_cols=104  Identities=20%  Similarity=0.214  Sum_probs=93.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           17 FFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        17 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      ....|+...|+.++.+|+...|... ....++|.++.+-|-.-.|-..+.+++.++...+-.++.+|..+..+.+.+.|+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence            3467999999999999999999643 468899999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           96 SAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      +.|+.++.++|+++.+-..|..+..
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999998777766544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00073  Score=57.18  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTAL  102 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l  102 (268)
                      ..-...|++|+...+.++..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. ++.|...|.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456789999999999999999988888888889999999999999999999999999877766665 999999999999


Q ss_pred             hhCCCCHHHHHHHHHH
Q 024419          103 QYNPQSAEVSRKIKRV  118 (268)
Q Consensus       103 ~~~p~~~~~~~~l~~~  118 (268)
                      +.+|+++..|...-+.
T Consensus       168 R~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hcCCCChHHHHHHHHH
Confidence            9999999887655443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.73  E-value=0.002  Score=60.79  Aligned_cols=119  Identities=11%  Similarity=-0.013  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEA   87 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~   87 (268)
                      +..+..+|...+.+++|.++++..++...+...+|...|..++..++-+.|...+.+|++--|.  +....-..|.+-++
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            3444555556666666666666666666556666666666666666666666666666666665  55555566666666


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      .|+.+.+...|+-.+.-+|...+.|.-+...-...+..+.+
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence            66666666666666666666666666555544444433333

>PRK10941 hypothetical protein; Provisional

Probab=97.73  E-value=0.0008  Score=53.70  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      ..+.++=.+|.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|+..++..++..|+++.+..-..++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            55667888999999999999999999999999999999999999999999999999999999999999876654444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.72  E-value=0.00083  Score=58.34  Aligned_cols=106  Identities=14%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~   95 (268)
                      ..+.+.|.+.+....+..|+++-.++..|.++...|+.++|++.|++++......    .-.++.+|.++..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4577899999999999999999999999999999999999999999998644332    356889999999999999999


Q ss_pred             HHHHHHHhhCCCCHH-HHHHHHHHHHHHHHH
Q 024419           96 SAFQTALQYNPQSAE-VSRKIKRVSQLAKDK  125 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~  125 (268)
                      .+|.+..+.+.-... ..+..|-++...++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999997665444 344555666666666

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.71  E-value=0.00081  Score=45.35  Aligned_cols=92  Identities=21%  Similarity=0.345  Sum_probs=60.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCCHHHH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVK-----------LNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      ++..++..|++-+|+++.+..+...+++.   ..+..-|.++..+..           .-.++++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57788999999999999999999988876   444455666654432           1245556666666666665555


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      +.+|.-+.....|+++..-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            55555555555555555555555543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.71  E-value=0.00027  Score=56.21  Aligned_cols=75  Identities=21%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      -.+.|.-..+.|+.++|...|+.|+.++|+++.++..+|......++.-+|-.+|-++|.++|.|.+++.+..+.
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            334455556778888888888888888888888888888887777888888888888888888887776665543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.68  E-value=0.00051  Score=40.04  Aligned_cols=43  Identities=9%  Similarity=0.126  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      +.++.+|..+.++|+|++|..+.+.+|+++|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3567778888888888888888888888888887776544444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.68  E-value=0.00051  Score=49.74  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      ..++..++..+...|++++|+..+++++..+|.+..++..+-.+|..+|+...|+..|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456677888899999999999999999999999999999999999999999999999988854

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.65  E-value=0.00059  Score=59.24  Aligned_cols=101  Identities=12%  Similarity=0.016  Sum_probs=82.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGY   78 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~   78 (268)
                      |..+-.++..|..+...|+.++|++.|++++.....    ..-.++.+|+|+..+++|++|..+|.+.++.+.-. .-..
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~  343 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA  343 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence            677778899999999999999999999998853322    24578899999999999999999999999976543 3345


Q ss_pred             HHHHHHHHHccCH-------HHHHHHHHHHHhh
Q 024419           79 FRKGCILEAMEQY-------DDALSAFQTALQY  104 (268)
Q Consensus        79 ~~la~~~~~~~~~-------~~A~~~~~~~l~~  104 (268)
                      +..|.|+...++.       ++|.+.|.++-.+
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            5668999999999       7777777776544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.65  E-value=0.00011  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.447  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3444555555555555555555555555444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.64  E-value=0.0069  Score=57.44  Aligned_cols=129  Identities=12%  Similarity=-0.025  Sum_probs=97.8

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK   76 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   76 (268)
                      +.|..+-.|...-....+.++.++|.+..++||.. ++...    .+|..+=+....-|.-+.-.+.|++|.+.. +-..
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHH
Confidence            45677777888877888888999999999999874 44433    333333333344456667777888888775 3346


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +|..|..+|...+++++|.+.|+..++.......+|...+..+...++-+.|..+
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence            7888999999999999999999999999888889999999988877776666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.63  E-value=0.00012  Score=38.07  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   73 (268)
                      +++.+|.|+...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.63  E-value=0.0017  Score=52.58  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q 024419            6 EEMSLKDKGNEFFK-AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRK   81 (268)
Q Consensus         6 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l   81 (268)
                      ..+.+...|..-+. .++.+.|..+|+.+++..|.+..+|......+...++.+.|...|++++..-|...   ..|...
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~  113 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF  113 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            45677788888777 67777799999999999999999999999999999999999999999999877654   678888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      ...-...|+.+...+..+++.+..|+....
T Consensus       114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  114 IEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            888888999999999999999999985444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.62  E-value=0.00033  Score=55.74  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=72.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++......|......|+.++|...|..|+.++|+++.++..+|......++.-+|-.+|-+|+.++|.|.+++.+.+..
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34555667777888999999999999999999999999999999999999999999999999999999999998887654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.0017  Score=48.45  Aligned_cols=95  Identities=24%  Similarity=0.190  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCIL   85 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~   85 (268)
                      ...++..+...+++++|+..++.++....+.   .-+-.++|.+...+|++++|+..+.....  +.+ +..-...|.++
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil  169 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence            3455555666666666666666655432221   23444556666666666666555433321  111 12233446666


Q ss_pred             HHccCHHHHHHHHHHHHhhCC
Q 024419           86 EAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      ...|+-++|+..|+++++.++
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         170 LAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             HHcCchHHHHHHHHHHHHccC
Confidence            666666666666666665553

>PRK10941 hypothetical protein; Provisional

Probab=97.56  E-value=0.0019  Score=51.62  Aligned_cols=75  Identities=15%  Similarity=0.118  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      .+.++=..+...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|...++..++..|+.+.+-.-...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            445666788999999999999999999999999999999999999999999999999999999999877654443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.55  E-value=9.1e-05  Score=62.17  Aligned_cols=86  Identities=16%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           46 NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        46 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      .-+.-.+.-+.++.|+..|.++|+++|+++..+-+.+.++.+.++|..|+..+.++++++|....+|..-|.....++.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            44666778899999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHhHHH
Q 024419          126 KRAQEV  131 (268)
Q Consensus       126 ~~a~~~  131 (268)
                      .+|...
T Consensus        89 ~~A~~~   94 (476)
T KOG0376|consen   89 KKALLD   94 (476)
T ss_pred             HHHHHH
Confidence            888654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.55  E-value=0.00019  Score=38.31  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      +.++|.+|..+|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444444444444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.53  E-value=0.0043  Score=45.01  Aligned_cols=110  Identities=13%  Similarity=-0.028  Sum_probs=85.8

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .-...+......-...++.+++...+.-.--+.|+.+.+-..-|+.+...|+|.+|+..++.+..-.|..+.+--.++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            33567788888888889999999999999999999999999999999999999999999999988889898888889999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      +..+|+.+= ..+-..+++..| ++.+...+.
T Consensus        88 L~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~  117 (160)
T PF09613_consen   88 LYALGDPSW-RRYADEVLESGA-DPDARALVR  117 (160)
T ss_pred             HHHcCChHH-HHHHHHHHhcCC-ChHHHHHHH
Confidence            988888641 122333444433 444444333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.51  E-value=0.0029  Score=57.15  Aligned_cols=118  Identities=15%  Similarity=0.045  Sum_probs=95.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |...-+....|.++++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|. -+....+=.
T Consensus        40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFm  118 (932)
T KOG2053|consen   40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFM  118 (932)
T ss_pred             CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence            5556677788999999999999998888877778889999999999999999999999999999999999 888888889


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLA  122 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~  122 (268)
                      +|.+.++|.+--+.--+.-+..|+++.. |..++-+....
T Consensus       119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence            9999988877555555555577887654 44444444333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.47  E-value=0.0016  Score=42.80  Aligned_cols=65  Identities=15%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 024419           60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKD  124 (268)
Q Consensus        60 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~  124 (268)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+.  ..+...+-.+...+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556667777777777777777777777777777777777777777654  4555555555555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.43  E-value=0.0028  Score=41.63  Aligned_cols=66  Identities=17%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCH
Q 024419           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCILEAMEQY   91 (268)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~   91 (268)
                      .+..+++.++.+|++..+.+.+|.++...|++++|++.+-.+++.+|++  ..+.-.+-.++...|.-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            4677889999999999999999999999999999999999999999876  44555555555555543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.42  E-value=0.0003  Score=37.53  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ++..+|.+|...|+|++|+++|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999996644

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.41  E-value=0.019  Score=47.52  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        27 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      ...+++.+..+|.+..+|..+....-..-.            .+.-+..+++||+.+|++...+..+=.+..+..+.+.-
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            346788888999999999988776555432            45668889999999999988888887888888888888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           95 LSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .+-+++++..+|+++..|...-...
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHH
Confidence            8999999999999999887665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.011  Score=53.52  Aligned_cols=187  Identities=13%  Similarity=0.129  Sum_probs=121.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH--------HHHh---hCCCCHHHHHHHHHHHHH
Q 024419           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE--------TTIS---LNPQWEKGYFRKGCILEA   87 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~--------~al~---~~p~~~~~~~~la~~~~~   87 (268)
                      ..|+.+.|..-.+-.     ++-.+|-++|....+.++.+-|.-++-        +|+.   .+|++.+  ...|.+-..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e--akvAvLAie  812 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE--AKVAVLAIE  812 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh--hHHHHHHHH
Confidence            357777776654332     245789999999988888877765542        2222   2444333  346778889


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF  167 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (268)
                      +|..++|...|.+.-        -+-.+..+|+.+|.|++|.++.+....+..               ...++.......
T Consensus       813 LgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---------------r~Tyy~yA~~Le  869 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIHL---------------RNTYYNYAKYLE  869 (1416)
T ss_pred             HhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhccceeh---------------hhhHHHHHHHHH
Confidence            999999999999974        345678899999999999777432222211               122222223344


Q ss_pred             HHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHh
Q 024419          168 VVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       168 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~  238 (268)
                      ..++++.|+++|+++-.-...+..++.++..+++.|-+-.. ++...  .-.|+++...|..  |+..|.+|-
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~-d~~L~--~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR-DESLY--SWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc-chHHH--HHHHHHHhcccchHHHHHHHHHhh
Confidence            56778889999998866555677788888877776643322 33221  1156777777755  777777776

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.38  E-value=0.02  Score=39.20  Aligned_cols=95  Identities=20%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh-------h
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFLHLVKLNKALADAETTIS-------L   70 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~   70 (268)
                      ....|...+..|-|++|..-+++|....-+            ++.++-.++.++..+|+|++++..-.++|.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            345566677889999999999999986322            245677788899999999999888888875       3


Q ss_pred             CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           71 NPQ----WEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        71 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      +.+    ++.+.+..|..+..+|+.++|+..|+.+-+.
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            544    3566788999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.38  E-value=0.00037  Score=35.44  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNP   72 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   72 (268)
                      ++..+|.++..+++++.|+..++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344444444444444444444444444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.12  Score=47.13  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETT----------ISLNPQ----------WEKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      ..|++.|.-+...++.+.|+++|+++          |.-+|.          +...|..+|.-+...|+.+.|+.+|..+
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            56888888888999999999999875          344553          4567777898888999999999999886


Q ss_pred             Hhh---------------------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH
Q 024419          102 LQY---------------------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM  140 (268)
Q Consensus       102 l~~---------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  140 (268)
                      -..                     ...+..+-+.+++-|...|+..+|..+....+.+.+
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsn  998 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSN  998 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            433                     344567888899999999999999877654444333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.26  E-value=0.018  Score=40.35  Aligned_cols=80  Identities=11%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CChHHHHHHHHHHHHcC---ChHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           39 SNPTLFSNRAAAFLHLV---KLNKALADAETTIS-LNPQW-EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      -+....+++++++....   +..+.+..++..++ -+|.. -+..+.+|..+.+.++|+.++.+....++.+|+|..+..
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            35678899999998865   46688999999996 55653 567888999999999999999999999999999988865


Q ss_pred             HHHHH
Q 024419          114 KIKRV  118 (268)
Q Consensus       114 ~l~~~  118 (268)
                      .-..+
T Consensus       110 Lk~~i  114 (149)
T KOG3364|consen  110 LKETI  114 (149)
T ss_pred             HHHHH
Confidence            44444

>smart00028 TPR Tetratricopeptide repeats

Probab=97.26  E-value=0.00062  Score=34.56  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      .++..+|.++..++++++|+..++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.26  E-value=0.0024  Score=53.01  Aligned_cols=93  Identities=18%  Similarity=0.342  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------C----------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------N----------PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      +...-|...+.+++|..|+.-|..+|++..+        .          ..+--.+..||+++++.+-|+.+..+.|-+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            4455677889999999999999999987321        1          123346899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      ||.+...+...|.|+..+.+|.+|...+--+
T Consensus       258 nP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987655444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.25  E-value=0.0024  Score=37.22  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      +.++.+|..++++|+|++|..+.+.+|+++|+|..+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3567778888888888888888888888888887665433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.031  Score=45.46  Aligned_cols=129  Identities=12%  Similarity=0.043  Sum_probs=96.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      |.+.-++.---..++.+|+...-...+++.+-. +|+-   ..+.-.++.++...|-|++|.+..++++++||.+..+..
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            455555555566788899999999999999877 6655   455556788999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++.++...+++.++.+...+.-..=...    .--|-..+..+...+.++.|.++.
T Consensus       214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999999999998887743221100    111223344444556777776664

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.16  E-value=0.029  Score=46.85  Aligned_cols=120  Identities=16%  Similarity=0.173  Sum_probs=98.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--C-C---
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISL--N-P---   72 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p---   72 (268)
                      +...+..+...+....+.|+++.|...+.++...++.    .+.+.+..+......|+..+|+..++..+..  . +   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3456778999999999999999999999999987632    5688888999999999999999999888871  1 1   


Q ss_pred             ----------------------C------CHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           73 ----------------------Q------WEKGYFRKGCILEAM------EQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        73 ----------------------~------~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                                            .      ...++..+|.-....      +..++++..|..+++++|+...+|...|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                  0      135666677666666      888999999999999999999999998888


Q ss_pred             HHHH
Q 024419          119 SQLA  122 (268)
Q Consensus       119 ~~~~  122 (268)
                      +...
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.15  E-value=0.00085  Score=51.20  Aligned_cols=57  Identities=23%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   74 (268)
                      ...++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555555555555555555555555555555555555555555555555555543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.15  E-value=0.0012  Score=52.73  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        29 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      .|.++....|+++..|...+.-..+.+-+.+--..|.++++.+|.|++.|.. .+.-+...++++.+...|.+++..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3455566678999999999888888899999999999999999999999987 456678889999999999999999999


Q ss_pred             CHHHHHHHHH
Q 024419          108 SAEVSRKIKR  117 (268)
Q Consensus       108 ~~~~~~~l~~  117 (268)
                      +|.+|...-.
T Consensus       175 ~p~iw~eyfr  184 (435)
T COG5191         175 SPRIWIEYFR  184 (435)
T ss_pred             CchHHHHHHH
Confidence            9998876544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.11  E-value=0.016  Score=49.55  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      ..+|.++.+.|+.++|++.++..++..|.  +..++.++..|+..++.|.++...+.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            34555555555555555555555555443  2345555555555555555555555553

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.018  Score=45.90  Aligned_cols=131  Identities=10%  Similarity=0.041  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      ...-+.-+.-....|++.+|...+..++...|++..+...++.|+...|+.+.|...+...    |.+...-...+ +..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~-l~a  208 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHG-LQA  208 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHH-HHH
Confidence            3445556777888999999999999999999999999999999999999999987766553    44322222222 111


Q ss_pred             HHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc--hhhhHHHHHHHHHHHHHHHHhhhhhhhch
Q 024419          121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA--EECWKHVFSFVVETMETAVKSWHETSKVD  186 (268)
Q Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  186 (268)
                      .+....+|...-          ....+...+..+..+  .....+..+...++.+.|++++-..+..+
T Consensus       209 ~i~ll~qaa~~~----------~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         209 QIELLEQAAATP----------EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHHHHHHHhcCC----------CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            222223332220          011112222222222  23344455666788888888877666554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.16  Score=43.55  Aligned_cols=131  Identities=13%  Similarity=0.107  Sum_probs=105.0

Q ss_pred             CchHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHH-HcCChHHHHHHHHHHHhhC---C
Q 024419            2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSN---PTLFSNRAAAFL-HLVKLNKALADAETTISLN---P   72 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~---p   72 (268)
                      .+..=+.++..+|..+...|  +...+|.+.+-.+...|.+   +..+..+|.+++ -..+.+.|..+++++..+-   |
T Consensus         2 ~qdAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip   81 (629)
T KOG2300|consen    2 EQDAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP   81 (629)
T ss_pred             chhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence            34455778899999999999  9999999999999988865   466777887654 5789999999999998764   4


Q ss_pred             CC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHHHHhHHHH
Q 024419           73 QW----EKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAE----VSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        73 ~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+    ..+.-.++.+|.... .+..|...+++++++..+++.    ...+|+++.....++..|.+..
T Consensus        82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen   82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            43    345566888888877 788899999999999887764    5677888888888888887763

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.01  Score=52.05  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .+.+.|..+++.++|..+++.|...+..-|.+      +....+++.||..+.+.+.|.+.++.|-+.+|.++-..+..-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45677888999999999999999999987765      355667899999999999999999999999999998888888


Q ss_pred             HHHHHccCHHHHHHHHHHHHhh
Q 024419           83 CILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      .+....+.-++|+.+..+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888999999999888887655

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.97  E-value=0.031  Score=39.97  Aligned_cols=86  Identities=12%  Similarity=-0.077  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...+......-...++..++...+...--+.|+.+.+...-|..+...|+|.+|+..++....-.+..+.+.-.++.|+.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            45566666666778888888888888888889998888888999999999999999998888888888877788888888


Q ss_pred             HccCHH
Q 024419           87 AMEQYD   92 (268)
Q Consensus        87 ~~~~~~   92 (268)
                      .+|+.+
T Consensus        90 al~Dp~   95 (153)
T TIGR02561        90 AKGDAE   95 (153)
T ss_pred             hcCChH
Confidence            888753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.14  Score=39.96  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN  105 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  105 (268)
                      +..+..-+.+|....+|++|..++.++++-..+|      +.++-+.|.+...+..+.++...|+++..+.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4566667888999999999999999999654433      4667778888888999999999999998774

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.89  E-value=0.02  Score=44.30  Aligned_cols=88  Identities=17%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             HcCCHHHHHHHHHHHHhc----C-CC--ChHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC------CHHHH
Q 024419           19 KAGNYLKAAALYTQAIKQ----D-PS--NPTLFSNRAAAFLHLVKLN-------KALADAETTISLNPQ------WEKGY   78 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~----~-p~--~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~~~   78 (268)
                      ....+++|++.|.-|+-.    . +.  -+.+++.+|++|..+|+.+       .|...|.+++.....      ...+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345788999999888753    2 11  2678899999999999954       666666666654322      25778


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      +.+|.+..+.|++++|...|.+++..--
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            8899999999999999999999997643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.88  E-value=0.16  Score=42.76  Aligned_cols=153  Identities=11%  Similarity=-0.033  Sum_probs=98.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------CC------------CC---HHHHHHHHH
Q 024419           33 AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------------NP------------QW---EKGYFRKGC   83 (268)
Q Consensus        33 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~   83 (268)
                      .++.+|-+.+++..++.++..+|+.+.|.+..++||-.              ++            .|   ..+.+....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            35679999999999999999999999999999888632              11            12   245677788


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ-LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      .+.+.|-+..|.+..+-.+.+||. ++-.....-..+. ..++++--+.+.......        ........+.+....
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~--------~~~~~~~~lPn~a~S  183 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK--------CYRNWLSLLPNFAFS  183 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh--------hhhhhhhhCccHHHH
Confidence            888999999999999999999999 6654444433332 334444433332100000        000001112233344


Q ss_pred             HHHHHHHHHHH---------------HHHHHhhhhhhhchhHHHHHh
Q 024419          162 KHVFSFVVETM---------------ETAVKSWHETSKVDAKVYFLL  193 (268)
Q Consensus       162 ~~~~~~~~~~~---------------~~A~~~~~~~~~~~~~~~~~~  193 (268)
                      ..+..+..++-               +.|.....+++...|.+...+
T Consensus       184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L  230 (360)
T PF04910_consen  184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL  230 (360)
T ss_pred             HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence            44444445555               788888888888888854433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0032  Score=51.13  Aligned_cols=118  Identities=24%  Similarity=0.290  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------C--------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-----------S--------NPTLFSNRAAAFLHLVKLNKALADAETTI   68 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al   68 (268)
                      +.....|+..++.++|..|..-|.+++..-.           +        -.....+++.|-+..+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            3445677889999999999999999876411           1        12456678899999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      ..++....+++.++..+....++++|++.++.+....|++..+...+...-....++
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            999999999999999999999999999999999999999998887777665555444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.83  E-value=0.0024  Score=48.85  Aligned_cols=59  Identities=24%  Similarity=0.482  Sum_probs=55.8

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      ...+.++.+.|.+.|.+++.+.|++...|+++|....+.|+++.|...|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45567899999999999999999999999999999999999999999999999999987

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.78  E-value=0.041  Score=48.04  Aligned_cols=108  Identities=13%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           11 KDKGNEF-FKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus        11 ~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      ...+-.| ..+|+.-+|..++..++-.-|...  .++..+|.++.++|...+|--.+.-|+.-.|.....++.+|.++..
T Consensus       216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am  295 (886)
T KOG4507|consen  216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM  295 (886)
T ss_pred             HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence            3344444 356788888888888888766543  4677788888888888888888877777777777778888888888


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .+++.....+|..+.+.+|...........+
T Consensus       296 l~~~N~S~~~ydha~k~~p~f~q~~~q~~~~  326 (886)
T KOG4507|consen  296 LGEYNHSVLCYDHALQARPGFEQAIKQRKHA  326 (886)
T ss_pred             HhhhhhhhhhhhhhhccCcchhHHHHHHHHH
Confidence            8888888888888888888776555544443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.75  E-value=0.082  Score=43.74  Aligned_cols=102  Identities=10%  Similarity=-0.025  Sum_probs=81.2

Q ss_pred             chHhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            3 AEAEEMSLKDKGNEFFKAGN------------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      +|.+.++|..+....-..-.            .+.-+.+|++|++.+|++..++..+-.+..+..+.++..+-+++++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            68888888887765544322            567889999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhh
Q 024419           71 NPQWEKGYFRKGCILEA---MEQYDDALSAFQTALQY  104 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~  104 (268)
                      +|.++..|...-.....   .-.++.....|.+++..
T Consensus        95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99998887665433322   33577778888887754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.74  E-value=0.043  Score=39.93  Aligned_cols=85  Identities=15%  Similarity=0.068  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      ...+..+..+-...++.+.+...+.-.--+.|..+.+-..-|.++...|++.+|+..++.+.+-.|..+.+--.++.++.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45677778888888999999999998889999999999999999999999999999999999999999998888999988


Q ss_pred             HHHHH
Q 024419          121 LAKDK  125 (268)
Q Consensus       121 ~~~~~  125 (268)
                      .+++.
T Consensus        90 ~~~D~   94 (160)
T PF09613_consen   90 ALGDP   94 (160)
T ss_pred             HcCCh
Confidence            77654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.083  Score=41.53  Aligned_cols=113  Identities=22%  Similarity=0.251  Sum_probs=98.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH-HHHH
Q 024419           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DALS   96 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~   96 (268)
                      +...-..|+..-..++.++|.+-.+|..+-.|+..++ +..+-++.+...+.-+|+|..+|..+-.+....|++. .-++
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            4445678999999999999999999999988888764 6777788899999999999999999999999999988 7889


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..+.++..+..|.-+|.....+....+.++.-..+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y  169 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY  169 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999999999998888887765443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.59  E-value=0.05  Score=40.77  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCH----HHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWE----KGY   78 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~   78 (268)
                      .++..+|..+.+.|+++.|++.|.++.......   .+.++++-.+....+++........++-.+-.  .+.    ...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345566666666666666666666655543322   24455555555666666666666555544321  111    122


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHH
Q 024419           79 FRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      ..-|..+...++|..|.+.|-.++
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            333444555566666655555544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.03  Score=44.31  Aligned_cols=77  Identities=23%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      ....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-..-.++
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34445666788899999999999999999999999999999999999999999999999999999998876544444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.51  E-value=0.32  Score=42.68  Aligned_cols=125  Identities=11%  Similarity=-0.001  Sum_probs=105.7

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYFRKGC   83 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~   83 (268)
                      .+...|..-...-...|++....-.|++++--.......|...+.-....|+.+-|-..+..+.++ .|..+..+..-+.
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            345556666666778899999999999999988888999999999999999999999999888886 4667778888888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      .-...|++..|...+++..+--|+...+-..-.......|..+.+.
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            8888999999999999999888998887776667777777776664

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.46  E-value=0.079  Score=35.90  Aligned_cols=82  Identities=22%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 024419           47 RAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQ-----------YDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        47 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      ++.-++..|++-+|++..+..+..++++.   ..+..-|.++..+..           .-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778999999999999999999988765   556667888876542           2358899999999999998888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 024419          113 RKIKRVSQLAKDKKRA  128 (268)
Q Consensus       113 ~~l~~~~~~~~~~~~a  128 (268)
                      +.+|.-+.....++++
T Consensus        82 ~~la~~l~s~~~Ykk~   97 (111)
T PF04781_consen   82 FELASQLGSVKYYKKA   97 (111)
T ss_pred             HHHHHHhhhHHHHHHH
Confidence            8888876666666665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.44  E-value=0.0056  Score=51.98  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC---------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DP---------SNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      .+.++|-+++..|.|.-++.+|.+|+..         .|         .+..++++.|..|...|++-.|.++|.+++..
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999961         11         24588999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 024419           71 NPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~   88 (268)
                      .-.++..|.++|.|.+..
T Consensus       365 fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhcCcHHHHHHHHHHHHH
Confidence            999999999999988753

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.4  Score=41.17  Aligned_cols=190  Identities=15%  Similarity=0.108  Sum_probs=122.2

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC------C--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------
Q 024419           18 FKAGNYLKAAALYTQAIKQDPS------N--------PTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ-------   73 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~~p~------~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-------   73 (268)
                      +..|=|++|.++-++++..-..      .        ...+-++..|-.-.|++.+|++....+...   .|.       
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence            3456677777777777765211      1        234557788889999999999888777654   444       


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SA--EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      .+..++.+|.--...+.++.|...|..+.++-.. +.  .+..+++.+|...++-+.--+..+..........      -
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~------s  439 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL------S  439 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc------h
Confidence            2445666777777788999999999999876443 22  3344566666665544333222111111100000      0


Q ss_pred             hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      -...-+.+.+..|.+.+.++++.+|.....+.++....                ++..+|+..++.+-.+.++.+.+..
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            11113456677888889999999999988887766532                4667888889988888888885544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.11  Score=45.29  Aligned_cols=105  Identities=19%  Similarity=0.059  Sum_probs=72.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET-TISLNPQWEKGYFRK------GCILE   86 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~   86 (268)
                      .-.+...++...+......++..+|.+..+..++|.+....|....+...+.. +....|++......+      |....
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK  153 (620)
T ss_pred             HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence            44445556677777777777888888888888887777776666665555544 777777776555444      66666


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .+++..++.....++..+.|.++.+...+...
T Consensus       154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         154 LLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            77777777777788888888776665555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.27  E-value=0.013  Score=31.93  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35566666666666666666666666554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.16  E-value=0.11  Score=43.39  Aligned_cols=102  Identities=15%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC---------------------------------ChHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPS---------------------------------NPTLFSNRAAAF   51 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~---------------------------------~~~~~~~~a~~~   51 (268)
                      .+...+..+..+...|+..+|+..++..+.. ...                                 .+.++..+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999998881 110                                 124556666666


Q ss_pred             HHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-----------------HHHHHHHHHHHhhCCC
Q 024419           52 LHL------VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY-----------------DDALSAFQTALQYNPQ  107 (268)
Q Consensus        52 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------~~A~~~~~~~l~~~p~  107 (268)
                      ...      +..++++..|.++++.+|....+|+.+|..+...-+.                 ..|+..|-+++...|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666      7888999999999999999999999999887765221                 2366777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.05  E-value=0.43  Score=35.94  Aligned_cols=87  Identities=18%  Similarity=0.088  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-AEVSRKIKRV  118 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~  118 (268)
                      +-+.++..+...+++++|+..++.++....+.   .-+-.++|.+..++|++++|+..+...-  +++. +..-...|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhH
Confidence            34567788888899999999988888654332   3456788889999999998887776542  2222 2234556777


Q ss_pred             HHHHHHHHHhHHH
Q 024419          119 SQLAKDKKRAQEV  131 (268)
Q Consensus       119 ~~~~~~~~~a~~~  131 (268)
                      +...|+.++|..-
T Consensus       169 ll~kg~k~~Ar~a  181 (207)
T COG2976         169 LLAKGDKQEARAA  181 (207)
T ss_pred             HHHcCchHHHHHH
Confidence            7777777777554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.02  E-value=0.015  Score=46.65  Aligned_cols=77  Identities=10%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN-RAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      |.++..|...+......|.|.+--..|.++++.+|.+++.|.. -+.-+...++.+.+...|.+++..||+++..|..
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            4566777788888888889999999999999999999999987 4456778899999999999999999999887654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.00  E-value=0.53  Score=44.48  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=82.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLV-------KLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      .+.+...+.|+.|+..|++.-.-.|..   .++.+..|.....+-       .+++|+..|++... .|.-+--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            456677788999999999999999875   467888888876652       46677777766533 4566777899999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      +|..+|++++-+++|.-+++..|.+|.+-..--.+
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL  595 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence            99999999999999999999999998765544433

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.98  E-value=0.071  Score=45.65  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      +.+...|........+.+.+.+--..|.+++..+|+++++|..-|.=.+..+. .+.|...+.++|+.+|+++..|..
T Consensus       102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            34566777777777777889999999999999999999999999887777765 999999999999999999877643

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.94  E-value=0.21  Score=47.67  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=100.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAA------LYTQA-IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-------   70 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   70 (268)
                      .++......|......|.+.+|.+      .+.+. -...|..+..+..++..+.+++++++|+..-.++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            567778888999999999998888      44422 2346788899999999999999999999998887654       


Q ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           71 -NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        71 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                       .|+....+.+++...+..++...|+..+.+++.+        .|.-.....+++.++...+.++.|....
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~l 1080 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYL 1080 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHH
Confidence             3455778889998888889999999988888765        4555556677888877778888886663

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.93  E-value=0.22  Score=44.57  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhh
Q 024419            6 EEMSLKDKGNEFFKA-----GNYLKAAALYTQAIK-----QDPSNPTLFSNRAAAFLHLV-----KLNKALADAETTISL   70 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~-----~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~   70 (268)
                      +..+...+|.+++.-     +|.+.|+.+|..+..     ..-..+.+.+.+|.+|.+..     ++..|...|.++-..
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            344455555555433     577777777777765     11124456667777777643     556677777777665


Q ss_pred             CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           71 NPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      .  ++.+.+.+|.++....   ++..|.++|..+...  .+..+.+.++.++..
T Consensus       323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            3  4456667777766554   456677777766533  455666666666544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.90  E-value=0.14  Score=32.34  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHcCChHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR---AAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---a~~~~~~~~~~~A~~~~~~a   67 (268)
                      +......|.-++.+.+.++|+..++++++..++...-+..+   ..+|...|+|.+++...-+-
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677777777777777777777777766655444433   34556666666666554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.89  Score=42.82  Aligned_cols=102  Identities=12%  Similarity=0.029  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD   92 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~   92 (268)
                      .|.+....+-|++|...|.+-    .-+..+..-+   -...++.+.|.+..+++     +.+.+|-++|.+..+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            455666666777777776552    1122222111   12344555555555444     44678888888888888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +|++.|-++     +++..+...-++....|.|++-..+
T Consensus      1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred             HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence            888888765     5667777777777777777766554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.78  E-value=0.029  Score=30.46  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ   36 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   36 (268)
                      +.++..+|..+...|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467899999999999999999999999986

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.75  E-value=0.076  Score=47.81  Aligned_cols=118  Identities=25%  Similarity=0.414  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      +......|+.+++.+++.+|.--|..++.+-|.+    +....+.+.|++.+  ++|..++....-++...|....+++.
T Consensus        53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~  132 (748)
T KOG4151|consen   53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK  132 (748)
T ss_pred             HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence            4556778899999999999988899999888843    56677788887765  68999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      .+.+|...+.++-|+....-....+|.+..+...+.++......
T Consensus       133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~  176 (748)
T KOG4151|consen  133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLEL  176 (748)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhh
Confidence            99999999999999999888888999997776655555544433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.13  Score=40.77  Aligned_cols=71  Identities=13%  Similarity=0.158  Sum_probs=62.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      ++=..+...++++.|..+.++.+.++|.++.-+--+|.+|.++|-+..|++.+...+..-|+.+.+-.-.+
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            34446678899999999999999999999999999999999999999999999999999999876654433

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.2  Score=39.44  Aligned_cols=112  Identities=12%  Similarity=0.139  Sum_probs=88.7

Q ss_pred             chHhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKA-GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      +|.+-..|.-+-.++... .+..+-++++...++.+|++-.+|+.+-.+....|++. .-++..+.++..+.+|.-+|-.
T Consensus        73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh  152 (318)
T KOG0530|consen   73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH  152 (318)
T ss_pred             CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence            444444554444444433 35778899999999999999999999999999999888 7788889999999999989888


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      +-.+...-+.+++-+.+....|+.|-.|-.+|..
T Consensus       153 RqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~  186 (318)
T KOG0530|consen  153 RQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ  186 (318)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence            8888888888999888888888887766555543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.70  E-value=0.051  Score=28.80  Aligned_cols=31  Identities=10%  Similarity=0.122  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHH--HHHHHhhCCC
Q 024419           77 GYFRKGCILEAMEQYDDALSA--FQTALQYNPQ  107 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~--~~~~l~~~p~  107 (268)
                      .++.+|..+...|++++|+..  |.-+..++|.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344455555555555555555  2244444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.64  E-value=1.1  Score=37.57  Aligned_cols=98  Identities=16%  Similarity=0.049  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ++-.....+......|++++|..-|+-.+. +|.. .-.+-.+-..-...|..+-|+.+-+.+-...|.-..++...=..
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            344566778888999999999999998776 5533 22333344445678999999999999999999998888777777


Q ss_pred             HHHccCHHHHHHHHHHHHhh
Q 024419           85 LEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ....|+++.|++..+...+.
T Consensus       198 r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHH
Confidence            88999999999988876543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.27  Score=41.24  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=83.3

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----CHH
Q 024419           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISLNPQWEKGYFRKGCILEAME----QYD   92 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~   92 (268)
                      ++.-.++-+.+...+++.+|++..+|+.+.+++.+.+.  +..=+..++++++.||.|..+|...=-+.....    ...
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            33457788899999999999999999999999998764  678899999999999999887766554444432    356


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           93 DALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      +-+++..+++.-++.|..+|..-..+..
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            6788999999999999999988777765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.61  E-value=0.22  Score=35.02  Aligned_cols=74  Identities=11%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            7 EMSLKDKGNEFFKAG---NYLKAAALYTQAIK-QDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      .+..++++..+....   +..+-+.+++..++ ..|. ..+..+.++..+++.++|+.++.+.+..++..|+|..+.-.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            456678888887665   45678999999996 5554 35678889999999999999999999999999999876543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.61  E-value=0.76  Score=37.32  Aligned_cols=108  Identities=18%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHH
Q 024419            9 SLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQW-EKGYF   79 (268)
Q Consensus         9 ~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~   79 (268)
                      +...+|..+..    ..+..+|+..|+.  ..+..++.+.+.+|.+|..    ..+..+|...|+++....-.. ..+.+
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~  152 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY  152 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            34444444443    2356667776663  3344556666667766665    336667777777776653222 23356


Q ss_pred             HHHHHHHHcc-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           80 RKGCILEAME-------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        80 ~la~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      .+|.+|..-.       +...|+..|.++-...  ++.+...+|.++.
T Consensus       153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~  198 (292)
T COG0790         153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE  198 (292)
T ss_pred             HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            6666665531       2225666666665554  5566666665553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.60  E-value=0.031  Score=30.01  Aligned_cols=28  Identities=14%  Similarity=0.259  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      ++..+|.+-+..++|++|+..|++++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444445555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.59  E-value=1.2  Score=37.50  Aligned_cols=83  Identities=12%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEA---MEQYDDALSAFQT-ALQYNPQSAEV  111 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~  111 (268)
                      ++++..++=.+|....+|+.-++..+..-.+    -++.+.+.+.+|-++.+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4677888888999999999999999888777    45567888899999999   9999999999999 55567788999


Q ss_pred             HHHHHHHHHHH
Q 024419          112 SRKIKRVSQLA  122 (268)
Q Consensus       112 ~~~l~~~~~~~  122 (268)
                      +..+|.++...
T Consensus       220 ~gL~GRIyKD~  230 (374)
T PF13281_consen  220 LGLLGRIYKDL  230 (374)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.59  E-value=0.28  Score=35.25  Aligned_cols=84  Identities=15%  Similarity=0.047  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      ..+.....+-...++.+++...+.-.--+.|+.+.+-..-|.++...|++.+|+..++...+-.|..+..--.++.++..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            45556666666789999999999888889999999999999999999999999999999998888888888888888888


Q ss_pred             HHHH
Q 024419          122 AKDK  125 (268)
Q Consensus       122 ~~~~  125 (268)
                      +++.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            7654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.50  E-value=0.085  Score=34.95  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419           17 FFKAGNYLKAAALYTQAIKQDPSN---------PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus        17 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      ....|+|..|++.+.+.......+         ..+..++|.++...|++++|+..+++++.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356677777777777666543221         234455555555566666666666655554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.50  E-value=1.1  Score=36.36  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCC---C-------hHHHHHHHHHHHHcCChH---HHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAG-NYLKAAALYTQAIKQ----DPS---N-------PTLFSNRAAAFLHLVKLN---KALADAETTI   68 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~---~-------~~~~~~~a~~~~~~~~~~---~A~~~~~~al   68 (268)
                      ++.+++.|......+ ++++|+..++++.++    .+.   +       ..++..++.+|...+.++   +|....+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            456788999999999 999999999999887    221   1       356778899999988765   4444555555


Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      ...|+.+.++...=.+....++.+.+.+.+.+.+..-+
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            56788777774444555558889999999999887644

It is also involved in sporulation [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.48  E-value=0.13  Score=41.34  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      |..=+...+++++.  ....++..++..+...|+++.+++.+++.+..+|.+-..|..+-.+|...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            55555555555543  2456788888888888888888899988888888888888888888888888888888888876


Q ss_pred             hh
Q 024419          103 QY  104 (268)
Q Consensus       103 ~~  104 (268)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            64

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.48  E-value=0.071  Score=28.24  Aligned_cols=30  Identities=17%  Similarity=0.084  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHH--HHHHHhhCC
Q 024419           43 LFSNRAAAFLHLVKLNKALAD--AETTISLNP   72 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p   72 (268)
                      .++.+|..+..+|++++|+..  |+-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555  334444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.47  E-value=0.086  Score=42.46  Aligned_cols=62  Identities=16%  Similarity=0.067  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      |..+|.+|+.+.|.++..++.+|.++...|+.=.|+=+|-+++-....++.+.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666665544445566666655555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.40  E-value=0.61  Score=39.78  Aligned_cols=123  Identities=15%  Similarity=0.004  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH--HHHHH---------hhCCC-
Q 024419            7 EMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD--AETTI---------SLNPQ-   73 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~--~~~al---------~~~p~-   73 (268)
                      +.-+..-|..+...|. -++|+..++.+++..|.+...-..  .+.+-...|.+|+..  +-+.+         .+.|- 
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence            4456677888889887 789999999999999887643221  122223334444321  11111         22332 


Q ss_pred             --CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           74 --WEKGYFRKG--CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        74 --~~~~~~~la--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                        +.+.-..++  .-++..|+|.++..+-.-..+++| .+.+++.+|-+......+++|-.+.
T Consensus       457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l  518 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL  518 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence              334444454  446779999999999999999999 8999999999999999999997764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.33  E-value=0.038  Score=29.64  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ++|..||.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.71  Score=37.03  Aligned_cols=122  Identities=15%  Similarity=0.074  Sum_probs=80.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc----CC----CChHHHHHHHHHHHHcCChHH----------H---------HHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQ----DP----SNPTLFSNRAAAFLHLVKLNK----------A---------LAD   63 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p----~~~~~~~~~a~~~~~~~~~~~----------A---------~~~   63 (268)
                      ..+|+...+.+++++|+..|.+.+..    +.    ....+..+++..|..+|++..          +         .+.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            67888899999999999999999976    22    124577889999999998642          1         222


Q ss_pred             HHHHHhhCCC---CH------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 024419           64 AETTISLNPQ---WE------------------------KGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAE  110 (268)
Q Consensus        64 ~~~al~~~p~---~~------------------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~  110 (268)
                      .+..++.-|.   +.                        ..-..+..++++.|+|.+|+......+.-      .|+-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            2333333332   21                        11133667788889999998777666532      244456


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHH
Q 024419          111 VSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       111 ~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ++..-..++...++..++....
T Consensus       167 vhllESKvyh~irnv~KskaSL  188 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASL  188 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHH
Confidence            6777777777777776665443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.24  E-value=0.15  Score=33.75  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419           50 AFLHLVKLNKALADAETTISLNPQ---------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                      -..+.|+|..|++.+.+.......         ...+...+|.++...|++++|+..++.++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            346789999999988888765332         245678899999999999999999999998754

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.20  E-value=0.59  Score=41.88  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            9 SLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         9 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      +...+|.+|....     ++..|..+|.++-...  ++.+.+.+|.|+..-.   +...|..+|..|.+.  .++.+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            5667888888743     7889999999998774  6778888999988766   678999999999775  57889999


Q ss_pred             HHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           81 KGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        81 la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      +|.||..-    .+.+.|...++++-+..  ++.+...++..+..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~  408 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY  408 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence            99999764    57899999999999887  55555556655543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.17  E-value=0.34  Score=46.33  Aligned_cols=129  Identities=20%  Similarity=0.197  Sum_probs=104.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   70 (268)
                      .|..+..+..++..+...+++++|+..-.++.-+        .|+....+.+++...+..++...|...+.++..+    
T Consensus       969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen  969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence            5677888999999999999999999998887654        2455678899999999999999999999988765    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        71 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                          .|.-+....+++.++...++++.|+.+.+.|+.++..        +...+..++++....+.+..|...
T Consensus      1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred             cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence                5666677788999999999999999999999986432        345677777777777777776544

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.11  E-value=0.12  Score=41.60  Aligned_cols=62  Identities=13%  Similarity=0.070  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        60 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      |+.+|.+|+.+.|.+..+|.++|.+....|+.=.|+-+|-+++......+.+..+|..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765568888999888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.10  E-value=1.7  Score=37.99  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           31 TQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        31 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ++-++.+|.+..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|..........++|+.-...|.++|..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            445666777777777666555444 6777777777777777777777776666666777777766666666643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.08  E-value=0.43  Score=35.77  Aligned_cols=64  Identities=8%  Similarity=-0.011  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ..++..+|.-|.+.|+.+.|++.|.++......   ..+.++.+-.+....+++........++-.+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356778888888888888888888887765432   2566777777777778887777777766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.89  E-value=0.48  Score=36.67  Aligned_cols=78  Identities=13%  Similarity=-0.026  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419            6 EEMSLKDKGNEFFKAGNY-------LKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNP   72 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   72 (268)
                      -+..+..+|..+...|+-       ..|++.|.+++.....      ...+.+.+|.+.++.|++++|+..|.+++...-
T Consensus       117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            466778899999999984       4566666666655432      247888899999999999999999999998643


Q ss_pred             CCH-HHHHHHHH
Q 024419           73 QWE-KGYFRKGC   83 (268)
Q Consensus        73 ~~~-~~~~~la~   83 (268)
                      ... .....+|.
T Consensus       197 ~s~~~~l~~~AR  208 (214)
T PF09986_consen  197 ASKEPKLKDMAR  208 (214)
T ss_pred             CCCcHHHHHHHH
Confidence            332 34455544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.88  E-value=2.4  Score=36.98  Aligned_cols=92  Identities=11%  Similarity=-0.088  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+..+-..+.++..++-......+.+... .+.-++..++.||... ..++=...+++.++.+=++...-..|+..|.+ 
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-  144 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-  144 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence            34444444444445555555666666643 4556777788888777 45666777787777777777666677766666 


Q ss_pred             cCHHHHHHHHHHHHh
Q 024419           89 EQYDDALSAFQTALQ  103 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~  103 (268)
                      ++-+.+...|.+++.
T Consensus       145 ik~sk~a~~f~Ka~y  159 (711)
T COG1747         145 IKKSKAAEFFGKALY  159 (711)
T ss_pred             hchhhHHHHHHHHHH
Confidence            777777788887764

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.61  E-value=0.59  Score=29.55  Aligned_cols=56  Identities=11%  Similarity=0.025  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHccCHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF---RKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~   99 (268)
                      ....|.-++..++.++|+..++++++..++...-+.   .+..+|...|+|++++++-.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666677777777777766655543333   33445556666666654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.58  E-value=0.2  Score=43.37  Aligned_cols=81  Identities=16%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        52 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      +..+....|+..|.+++...|.....+.+.+.++.+.   |+.-.|+.....+++++|....+|+.|+.++..++.+.+|
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            3345678999999999999999999999999888875   4566788889999999999999999999999999999998


Q ss_pred             HHHH
Q 024419          129 QEVE  132 (268)
Q Consensus       129 ~~~~  132 (268)
                      ....
T Consensus       465 l~~~  468 (758)
T KOG1310|consen  465 LSCH  468 (758)
T ss_pred             hhhH
Confidence            7653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=1.6  Score=38.58  Aligned_cols=105  Identities=20%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSN--RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT-  100 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-  100 (268)
                      .-++..+..-+.++|.++.++..  +...+...+....+......++..+|.+..++..+|.+....|....+...+.. 
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33677777777788888877544  477788889999999999999999999999999999998888887777666655 


Q ss_pred             HHhhCCCCHHHHHHH------HHHHHHHHHHHHh
Q 024419          101 ALQYNPQSAEVSRKI------KRVSQLAKDKKRA  128 (268)
Q Consensus       101 ~l~~~p~~~~~~~~l------~~~~~~~~~~~~a  128 (268)
                      +....|++......+      ++....++...++
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA  161 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence            889999998877766      4444444444444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.58  E-value=0.79  Score=34.80  Aligned_cols=74  Identities=11%  Similarity=0.057  Sum_probs=53.2

Q ss_pred             cCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHh
Q 024419           54 LVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        54 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ...-+.|...|-++-... -+.++..+.+|..|. ..+.++|+..+.++|++.+.    |++++..|+.++..+++++.|
T Consensus       119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            334466777665554322 145777777776554 77888899999999987543    488889999999988888877

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.54  E-value=0.24  Score=41.68  Aligned_cols=84  Identities=15%  Similarity=-0.013  Sum_probs=69.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCC--------C-----CH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           47 RAAAFLHLVKLNKALADAETTISLNP--------Q-----WE-----KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        47 ~a~~~~~~~~~~~A~~~~~~al~~~p--------~-----~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      =|..++++++|..|...|+.+|++..        .     ++     ..--.+..||..+++.+.|+..-.+.+-++|..
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            35567788889999888888887632        1     11     233568899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHH
Q 024419          109 AEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      ...+...+.+...+..|.+|..
T Consensus       262 frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.5  Score=42.02  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      ++.+-|.-.+++.+|..+++.|...+..-|.      ++.....++.||..+.+.+.|.++++.|-+.+|.++-.-....
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            4445677788999999999999999987654      3677888999999999999999999999999999987766666


Q ss_pred             HHHHHHHHHHHhHH
Q 024419          117 RVSQLAKDKKRAQE  130 (268)
Q Consensus       117 ~~~~~~~~~~~a~~  130 (268)
                      .+....+..++|..
T Consensus       436 ~~~~~E~~Se~AL~  449 (872)
T KOG4814|consen  436 QSFLAEDKSEEALT  449 (872)
T ss_pred             HHHHHhcchHHHHH
Confidence            66666666666654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.32  E-value=4.5  Score=37.66  Aligned_cols=124  Identities=13%  Similarity=-0.017  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--N-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--   74 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--   74 (268)
                      ++.-....+.....+.++.+|..+..++-..-|.  .       +..--..|.+....|++++|++..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3455677888899999999999999988776443  1       2445567888899999999999999999987764  


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHH--HHHHHHHHHHHHHHHHhH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNP----QSAEV--SRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~--~~~l~~~~~~~~~~~~a~  129 (268)
                         +.++..+|.+..-.|++++|......+.+...    -...+  ....+.+...+|+...++
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~  557 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE  557 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence               46678889999999999999999998887733    22333  334455666667444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.22  E-value=2.4  Score=34.33  Aligned_cols=112  Identities=15%  Similarity=0.074  Sum_probs=79.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC----CCC----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 024419           17 FFKAGNYLKAAALYTQAIKQD----PSN----PTLFSNRAAAFLHLV-KLNKALADAETTISL----NP---Q-------   73 (268)
Q Consensus        17 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~-------   73 (268)
                      ...+|+++.|..++.++-...    |+.    ...+++.|......+ +++.|+..++++.++    .+   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987654    433    467888999999999 999999999999887    22   1       


Q ss_pred             CHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           74 WEKGYFRKGCILEAMEQYDD---ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~---A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ...++..++.++...+.++.   |....+.+-...|+.+..+..--.+....+..+.+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~  140 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEY  140 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHH
Confidence            13567778889988887654   55555556566788777774444444443333333

It is also involved in sporulation [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=94.20  E-value=0.67  Score=35.68  Aligned_cols=63  Identities=19%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      ....+.+.++.++|+...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345678889999999999999999999999999999999999999999999999999999863

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.13  E-value=0.094  Score=25.39  Aligned_cols=17  Identities=24%  Similarity=0.053  Sum_probs=6.5

Q ss_pred             HHHHHHHHcCChHHHHH
Q 024419           46 NRAAAFLHLVKLNKALA   62 (268)
Q Consensus        46 ~~a~~~~~~~~~~~A~~   62 (268)
                      .+|.++...|++++|..
T Consensus         6 ~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    6 ALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            33333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.09  E-value=0.27  Score=39.36  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      ..+...+..|...|.+.+|++..+++++++|-+-..+..+-.++..+|+--.+++.|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445567777888888888888888888888888888888888888888777777766654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.04  E-value=4.8  Score=36.93  Aligned_cols=124  Identities=12%  Similarity=0.033  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 024419          111 VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVY  190 (268)
Q Consensus       111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  190 (268)
                      .|..-|.++..+.++++|.+........-....+..+.  ...........-|.....+++++.|+.+|-.+-.+-..+-
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa--fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA--FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh--CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            34455556666666677766654444444333333221  1112223333444455567788888877766543333222


Q ss_pred             HH--hhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHH
Q 024419          191 FL--LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSS  236 (268)
Q Consensus       191 ~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~k  236 (268)
                      -.  ..++.+|+......-+...........+..|...+.|  |.+.|.+
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence            22  2244444443333333222221122244445555555  4444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.00  E-value=1  Score=40.96  Aligned_cols=60  Identities=28%  Similarity=0.287  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAET------TISL----NPQW-EKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      ..|-.-|.++.+..++++|+++|++      ++++    -|.. ...--.+|.-+.+.|+++.|+.+|-.+
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea  732 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA  732 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence            3455567788888889999998864      4444    2332 233345677888889999888877655

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.98  E-value=0.097  Score=25.33  Aligned_cols=24  Identities=17%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~   99 (268)
                      .+.+.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999988775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.85  E-value=0.53  Score=37.87  Aligned_cols=74  Identities=8%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +..=+...+++++.  ....++..++..+...|+++.++..+++.+..+|.+..+|..+...+...|....|+..+
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y  210 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY  210 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence            34444444444442  457789999999999999999999999999999999999999999999999998887664

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.76  E-value=0.3  Score=34.99  Aligned_cols=48  Identities=21%  Similarity=0.081  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   89 (268)
                      +.....+...+..|++.-|......++..+|++..+...++.++.++|
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            333444444444455555555555555555555545444454444444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.62  E-value=1.2  Score=37.54  Aligned_cols=114  Identities=14%  Similarity=0.099  Sum_probs=91.4

Q ss_pred             CchHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----hHHHHHHHHHHHhhCCCCH
Q 024419            2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----LNKALADAETTISLNPQWE   75 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----~~~A~~~~~~al~~~p~~~   75 (268)
                      .+|+.-.+|..+..++.+++  ++..-++..+++++.||.|-.+|..+=.+......    ..+=++...++|.-|+.|.
T Consensus       104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY  183 (421)
T ss_pred             hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence            36788889999999998876  47899999999999999999999887666655433    5667888899999999999


Q ss_pred             HHHHHHHHHHHH------ccC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           76 KGYFRKGCILEA------MEQ------YDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        76 ~~~~~la~~~~~------~~~------~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      .+|.....++..      .|.      ...-++.-..++-.+|++..+|...
T Consensus       184 saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  184 SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            999998887773      231      3345677788888999998887753

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.30  E-value=1.9  Score=29.84  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             HHHHHHH--HHHHcCChHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           43 LFSNRAA--AFLHLVKLNKALADAETTISLNPQ------------WEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        43 ~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      +|+.++.  -.+.-|-|++|...++++....-.            +.-+|-.|+.++..+|+|++++..-.++|
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4444443  345568899999999999876322            24567778889999999999988877776

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.25  E-value=3.6  Score=32.96  Aligned_cols=50  Identities=4%  Similarity=0.080  Sum_probs=35.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419           20 AGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      ..+.++|+.-|++++++.|..+    .++-.+-.+++++++|++..+.|++.+.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3467778888888888777654    3555666777777777777777776654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.99  E-value=6  Score=34.85  Aligned_cols=117  Identities=11%  Similarity=-0.046  Sum_probs=86.3

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-   80 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-   80 (268)
                      .+|-+..+|..+..-+..+ -+++..+.|++.+...|.++++|.......+...+|+.-...|.+||..-- +.+.|.. 
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY   92 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY   92 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence            3688899999998887776 999999999999999999999999999999999999999999999987532 2444432 


Q ss_pred             HHHHHHHccCHHHHHHH----HHHHHh---hCCCCHHHHHHHHHHHH
Q 024419           81 KGCILEAMEQYDDALSA----FQTALQ---YNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~----~~~~l~---~~p~~~~~~~~l~~~~~  120 (268)
                      +..+....++...+.+.    |+=++.   .++....+|......+.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~  139 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE  139 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            33444445554444333    333332   36666777776666544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.92  E-value=0.62  Score=37.43  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .+...+..|...|.+.+|++..+++++++|-+...+..+..++...|+.-.+...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~kh  335 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKH  335 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence            3455677888999999999999999999999999999999999999886666544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.75  E-value=2.6  Score=35.54  Aligned_cols=101  Identities=15%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQ-----WEKGYFRK   81 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l   81 (268)
                      +++.....+.+.|-+..|.+..+-.+.+||. |+ .+++.+-....+.++++--+..++........     -+..-+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            5667778888999999999999999999998 65 35555556667778888777777776553221     23456778


Q ss_pred             HHHHHHccCH---------------HHHHHHHHHHHhhCCCCH
Q 024419           82 GCILEAMEQY---------------DDALSAFQTALQYNPQSA  109 (268)
Q Consensus        82 a~~~~~~~~~---------------~~A~~~~~~~l~~~p~~~  109 (268)
                      +.+++..++-               +.|...+.+|+...|.-.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            8888888888               899999999999988543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.70  E-value=5  Score=33.14  Aligned_cols=95  Identities=9%  Similarity=-0.024  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------------------
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------------------   71 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------   71 (268)
                      -..+-.......+..+-|..-..|++++|..+.++..++.--  ..-..+|...++++++.-                  
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d  264 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE  264 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence            345556667778888899999999999999999998887432  233456666776666531                  


Q ss_pred             -----CCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419           72 -----PQWE--KGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (268)
Q Consensus        72 -----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  106 (268)
                           ..++  ....++++|-.++|+..+|++.++...+-.|
T Consensus       265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                 1122  2345689999999999999999999888777

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.62  E-value=0.45  Score=23.79  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=16.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           90 QYDDALSAFQTALQYNPQSAEVSRKIKR  117 (268)
Q Consensus        90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~  117 (268)
                      +++.+...|++++...|.++..|.....
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4555566666666666666665554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.54  E-value=4.2  Score=32.95  Aligned_cols=103  Identities=13%  Similarity=0.037  Sum_probs=78.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGYFRKGCILEA----   87 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----   87 (268)
                      .....+++..|+..+..+-..  .+......++.+|..-    .+..+|+..|+.+  .+..++.+.+.+|.+|..    
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCc
Confidence            345778999999999998873  3347888889988875    4688899999944  455678899999999988    


Q ss_pred             ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLA  122 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~  122 (268)
                      ..+..+|...|+++.+..-.. ..+...++..+..-
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g  161 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG  161 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence            458999999999998874433 34466777766553

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.33  E-value=1.5  Score=37.83  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      .....|+.-.|-+...-++...|.++..-...+.+...+|.|++|.....-+-.+-..-..+...+-.....+|+++.|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            34566888888888888888888888888888888888888888877765544432222333344444555666666666


Q ss_pred             HHHHHHHhhCCCCHHHH
Q 024419           96 SAFQTALQYNPQSAEVS  112 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~~~  112 (268)
                      ..-.-.+.-.-+++++.
T Consensus       378 s~a~~~l~~eie~~ei~  394 (831)
T PRK15180        378 STAEMMLSNEIEDEEVL  394 (831)
T ss_pred             HHHHHHhccccCChhhe
Confidence            66666665544444443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.19  E-value=8  Score=34.35  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             cCCHHHHHHHHHHHHhc------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC----------
Q 024419           20 AGNYLKAAALYTQAIKQ------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NP----------   72 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p----------   72 (268)
                      ...|++|-..|.-++..            .|.+...+..++.+...+|+.+-|....+++|-.     +|          
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45678888888877765            4556788999999999999999888887777632     22          


Q ss_pred             ------CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024419           73 ------QW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ  120 (268)
Q Consensus        73 ------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~  120 (268)
                            .|   ..+.+..-..+.+.|-+..|.+.++-.++++|. +|.+...+-.++.
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A  388 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA  388 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence                  22   223344445566779999999999999999998 8877666666554

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.15  E-value=0.47  Score=23.71  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=14.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 024419           22 NYLKAAALYTQAIKQDPSNPTLFSNRA   48 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~~a   48 (268)
                      +++.|...|++++...|.++.+|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            445555555555555555555554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.98  E-value=0.63  Score=40.08  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |..+.-....+.+....|+|+.|......+-..-.....+..-+-.-...+|++++|.....-.+.-.-..+++..--|.
T Consensus       320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~  399 (831)
T PRK15180        320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG  399 (831)
T ss_pred             CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence            44455556678888899999999998877766544444444445566778999999999988888776677777766677


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      .-.++|-+++|...+++.+.++|..
T Consensus       400 sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        400 SADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             cHHHHhHHHHHHHHHHHHhccCChh
Confidence            7788899999999999999998854

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.94  E-value=8  Score=34.39  Aligned_cols=109  Identities=15%  Similarity=0.005  Sum_probs=47.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH---HHHHHHhh--CCC-CHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA---DAETTISL--NPQ-WEKGYFRKGCI   84 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~---~~~~al~~--~p~-~~~~~~~la~~   84 (268)
                      ...+..--.+|++..|...+++..+..|+...+-........+.|+.+.+..   .+.....-  ++. ....+...+..
T Consensus       370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL  449 (577)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence            3333344444555555555555555555555544444445555555554442   11111110  111 12223333322


Q ss_pred             -HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           85 -LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        85 -~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                       +.-.++.+.|...+.+++...|.+...+..+..+.
T Consensus       450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~  485 (577)
T KOG1258|consen  450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFE  485 (577)
T ss_pred             HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence             22234555555555555555555555555444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.90  E-value=3.3  Score=31.56  Aligned_cols=72  Identities=14%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHH
Q 024419           22 NYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      .-++|...|-++-. .|  ++++..+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++...|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            34556666654332 23  45677777777665 77889999999999988543    5889999999999999998873

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=91.60  E-value=5.8  Score=35.49  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=72.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      ..+-+++..+.+....+.-+.-...+....+..+..+-..++.++|-.+|++.+..+|+  +.++..|..+.+.|-..+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   93 (578)
T PRK15490         16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA   93 (578)
T ss_pred             HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence            34445667778887877777666677788888999999999999999999999999999  6788999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 024419           95 LSAFQTALQYNPQ  107 (268)
Q Consensus        95 ~~~~~~~l~~~p~  107 (268)
                      ...++   ++.|.
T Consensus        94 ~~~~~---~~~~~  103 (578)
T PRK15490         94 QLILK---KVSNG  103 (578)
T ss_pred             HHHHH---HhCcc
Confidence            88877   44454

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.53  E-value=0.44  Score=40.45  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHH-------H-hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETT-------I-SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~a-------l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      +...+.+++.-+|+|..|++..+..       . +.-+-++..++..|-+|..+++|.+|+..|..++-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888899999998876433       1 11234677889999999999999999999998873

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.25  E-value=21  Score=37.32  Aligned_cols=84  Identities=21%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHc
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG-CILEAM   88 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~   88 (268)
                      +.+.-......|++..|..+|+++++.+|+....+...-.+....|.++..+.+.+-...-.++..+-+..+| .+-+..
T Consensus      1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence            3444555667899999999999999999998877777777778888888887776666655555444444443 233444


Q ss_pred             cCHHH
Q 024419           89 EQYDD   93 (268)
Q Consensus        89 ~~~~~   93 (268)
                      ++++.
T Consensus      1532 ~qwD~ 1536 (2382)
T KOG0890|consen 1532 SQWDL 1536 (2382)
T ss_pred             cchhh
Confidence            44443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.23  E-value=6.3  Score=35.95  Aligned_cols=27  Identities=15%  Similarity=0.325  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      -.++..+|..+..+..+++|.++|.+.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356777777777777777777777665

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.06  E-value=0.52  Score=40.00  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      ++..+.+++...|||..|++..+.. ++         .+-+..+++..|-||+.+++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999997653 22         223467899999999999999999999998875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.94  E-value=3.9  Score=32.45  Aligned_cols=77  Identities=18%  Similarity=0.072  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHccCH
Q 024419           24 LKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q----WEKGYFRKGCILEAMEQY   91 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~   91 (268)
                      ...|+.+++|.......      ..+...+|.-|+..|++++|++.|+.+...--  .    ...+...+..|....|+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~  234 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            34555555555543221      23444566677777777777777776654321  1    134455566666666666


Q ss_pred             HHHHHHHHH
Q 024419           92 DDALSAFQT  100 (268)
Q Consensus        92 ~~A~~~~~~  100 (268)
                      ++.+.+.-+
T Consensus       235 ~~~l~~~le  243 (247)
T PF11817_consen  235 EDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHH
Confidence            665554433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.76  E-value=2.8  Score=26.35  Aligned_cols=16  Identities=13%  Similarity=0.333  Sum_probs=6.8

Q ss_pred             HHHHHHHHhhCCCCHH
Q 024419           95 LSAFQTALQYNPQSAE  110 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~  110 (268)
                      ++.+.+++...|+++.
T Consensus        33 Ie~L~q~~~~~pD~~~   48 (75)
T cd02682          33 IEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHhCCChHH
Confidence            3334444444444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.36  E-value=9.2  Score=35.53  Aligned_cols=162  Identities=14%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccC
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYFRKGCILEAMEQ   90 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~   90 (268)
                      .-..+++...|+-|+...+. ...++.. ..++...|.-++..|++++|...|-++|.. +|..+--.+      ....+
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~  412 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR  412 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH
Confidence            34456667777777776544 2223322 457777888888999999999999888863 443321111      11112


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh----hHHHhhhHHHH--------HHHhhhhcCch
Q 024419           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS----NVDMVQHLDEF--------KSEMSEKYGAE  158 (268)
Q Consensus        91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~  158 (268)
                      ..+=..+++...+..-.+..--..|-.+|..+++.++-.++.....    ..+....+..+        ...+...++.-
T Consensus       413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h  492 (933)
T KOG2114|consen  413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH  492 (933)
T ss_pred             HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence            2222233333333333333333344555666655555444322111    00111111000        01122233443


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhh
Q 024419          159 ECWKHVFSFVVETMETAVKSWHE  181 (268)
Q Consensus       159 ~~~~~~~~~~~~~~~~A~~~~~~  181 (268)
                      .....++...+++|++|+.++..
T Consensus       493 e~vl~ille~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  493 EWVLDILLEDLHNYEEALRYISS  515 (933)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhc
Confidence            44455566678888888888764

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.31  E-value=4.1  Score=31.54  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH
Q 024419           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRKIKRV  118 (268)
Q Consensus        49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~  118 (268)
                      ..+.+.+..++|+...+.-++.+|.+......+-.++.-.|+|++|..-++-+-++.|+...   .|..+-.+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34667889999999999999999999999989999999999999999999999999998743   44444444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.26  E-value=0.78  Score=25.49  Aligned_cols=25  Identities=8%  Similarity=0.122  Sum_probs=21.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      +.+|.+|..+|+.+.|.+.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5688889999999999988888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.23  E-value=5  Score=34.90  Aligned_cols=100  Identities=12%  Similarity=-0.007  Sum_probs=47.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      .....++++++..+.... ++-|.- ..-...++..+.++|-++.|+...        .+++..+.||   .+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence            345667777766666411 122222 233445555666677666665542        3344455444   355666666


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+..+     ..+++..|..||......|+.+-|++..
T Consensus       338 ~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~  370 (443)
T PF04053_consen  338 LEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECY  370 (443)
T ss_dssp             HHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred             HHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44322     2235666777777666666666665553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.23  E-value=18  Score=34.79  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      +.+.+|..+|.+..+.|...+|++.|-++     +++..|...-.+-.+.|.|++=+.++..+-+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            45789999999999999999999999765     67778888888999999999999988888765

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.17  E-value=18  Score=37.75  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=88.5

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CC----------
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQ----------   73 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~----------   73 (268)
                      .-++.|.+.|.+....|.++-|-...-.|.+..  -+.+...+|..+.+.|+-..|+..+++.+..+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            447789999999999999999999998888776  57889999999999999999999999999664 22          


Q ss_pred             C------HHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           74 W------EKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        74 ~------~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      .      ..+....+.-....++++  +-+..|..+.+.+|.....++.+|..+.+.
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence            1      122333333333445543  346889999999998888888888655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.13  E-value=15  Score=33.70  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      .++.++|..+.....|++|.++|...-.        .-+...|++....|++-    +.....-|++...+-.+|..+..
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~s  864 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTS  864 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHh
Confidence            3555556666655666666666544321        12344555555555442    22333346666677777777777


Q ss_pred             ccCHHHHHHHHHH
Q 024419           88 MEQYDDALSAFQT  100 (268)
Q Consensus        88 ~~~~~~A~~~~~~  100 (268)
                      .|.-++|.+.|-+
T Consensus       865 vGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  865 VGMCDQAVEAYLR  877 (1189)
T ss_pred             hchHHHHHHHHHh
Confidence            7777777766655

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.87  E-value=6.7  Score=29.29  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C--HHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--W--EKGYFRKGC   83 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~la~   83 (268)
                      -+.-+..+-..+..++|+.-|...-+..-.+  .-+.+..|.+..+.|+-..|+..|..+-.-.|-  -  -.+...-|.
T Consensus        61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~  140 (221)
T COG4649          61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY  140 (221)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence            3555666777788888888888777665544  345677788888888888888888877665432  1  234556667


Q ss_pred             HHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419           84 ILEAMEQYDDALSAFQTAL-QYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                      ++...|-|++-..-.+..- ..+|-...+...||....+.|++.+|.....
T Consensus       141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~  191 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV  191 (221)
T ss_pred             HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence            7777888877654444432 3345556677777777777788887776543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.46  E-value=17  Score=33.26  Aligned_cols=108  Identities=16%  Similarity=0.041  Sum_probs=76.7

Q ss_pred             chHhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCC--h----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 024419            3 AEAEEMSLKDKGNEFF-KAGNYLKAAALYTQAIKQDPSN--P----TLFSNRAAAFLHLVKLNKALADAETTISLNPQ--   73 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~--~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--   73 (268)
                      +-.++...+.+|.+++ ...+++.|..++++++.+...+  .    .+.+.++.++.+.+... |....+++++.-..  
T Consensus        55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~  133 (608)
T PF10345_consen   55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG  133 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence            4467888899999998 7789999999999998886442  2    33445678888887777 99999999886443  


Q ss_pred             --CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhC--CCCHHH
Q 024419           74 --WEKGYFRKG--CILEAMEQYDDALSAFQTALQYN--PQSAEV  111 (268)
Q Consensus        74 --~~~~~~~la--~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~  111 (268)
                        .....+++-  ......+++..|++.++.+....  +.++.+
T Consensus       134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence              222223332  22323379999999999998876  455443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.29  E-value=1.1  Score=24.92  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHh
Q 024419           45 SNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus        45 ~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      +.+|.+|..+|+.+.|.+.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.24  E-value=2.3  Score=30.52  Aligned_cols=55  Identities=9%  Similarity=0.021  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      -.+.....+......|++.-|.+....++..+|+|..+....+.++..++...+.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            3455566777777888899999999999999999998888888888888766543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.45  E-value=16  Score=31.84  Aligned_cols=94  Identities=17%  Similarity=0.037  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   89 (268)
                      ....+..+.++|-.+.|+..-        +++...+.+|   .+.|+.+.|.+..+     ..+++.-|.+||......|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence            344556666777777777653        3456666665   78999998887642     2347789999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR  127 (268)
Q Consensus        90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~  127 (268)
                      +++-|.++|+++-        -+..|.-++...|+.+.
T Consensus       362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREK  391 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred             CHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence            9999999999873        22334444555554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.36  E-value=11  Score=32.02  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPS-NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKG   77 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~   77 (268)
                      ..++-....+...|+...--..+...+..     +.. .+...+.+=.+|...+.|++|-....++.--    +...+..
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY  249 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY  249 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence            34455555566666655555555444432     222 2344555677888889999998887776521    1234567


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      .+.+|.+..-+++|..|.++|..++...|.+.
T Consensus       250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            78899999999999999999999999999843

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.84  E-value=17  Score=31.46  Aligned_cols=98  Identities=13%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      -..+...|.++.+++++.+|...|.+..+.-.+++     +++.++-.--+-+++.+.-....-..-+..|..+....-.
T Consensus         6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~   85 (549)
T PF07079_consen    6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK   85 (549)
T ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            34567889999999999999999999987655442     4555555555667777777777777777788888888888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      |...++.++|.+|++.+..-...
T Consensus        86 ~L~~Y~~k~~~kal~~ls~w~~~  108 (549)
T PF07079_consen   86 ALVAYKQKEYRKALQALSVWKEQ  108 (549)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhh
Confidence            99999999999999988877655

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.43  E-value=7  Score=33.17  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC-CHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQ-WEK   76 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~-~~~   76 (268)
                      .++..+|..|..-|+++.|+..|.++-....+.   ...+.+.-.+-..+|+|..-.....+|...-       +. .+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            467789999999999999999999977765543   3567777778888999988777777776541       11 234


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRV  118 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~  118 (268)
                      +...-|.+...+++|..|..+|-.+..-        .|.+..++-.+..+
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL  280 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL  280 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence            5555677777888999998888776432        35556666655443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.41  E-value=6.4  Score=37.60  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            8 MSLKDKGNEFFKA-------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         8 ~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      ++.+..|-++..+       ..+++|+..|++.-. .|.-+--|.+.|.+|.++|++++-++++.-|++..|.++..-..
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (932)
T PRK13184        513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL  591 (932)
T ss_pred             HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence            3555555555432       257788888877443 56677789999999999999999999999999999988754333


Q ss_pred             HHHHHHHc-----cCHHHHHHHHHHHHhhCCCCHH
Q 024419           81 KGCILEAM-----EQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        81 la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      .-.+-.++     .+-..|....--++...|....
T Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (932)
T PRK13184        592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS  626 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            32222222     2234466667777777776543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=87.10  E-value=0.66  Score=38.20  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      .+.+.+-+..+++..|+..-..++..++....+++.++..+....++++|++.+..+....|++....-.+..+-.
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            4466677788888889888888888899999999999999999999999999999999999998766554444433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.74  E-value=5.7  Score=31.52  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI   68 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al   68 (268)
                      .....+|..++..|+|++|+.+|+.+....-..      ..++..+..|+...|+.+..+...-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345789999999999999999999997654332      4677788999999999998887665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=86.68  E-value=12  Score=30.33  Aligned_cols=114  Identities=14%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH---HHcCCh----HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAF---LHLVKL----NKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      ....+...++|++=.+.+.+..+...+  ..+..+..+...   +.+...    ..-...++.-++..|+..-++..+|.
T Consensus         6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~   85 (277)
T PF13226_consen    6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM   85 (277)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence            456678889999999999888765333  122112222211   122211    13556666677889999999988888


Q ss_pred             HHHHcc----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024419           84 ILEAME----------------------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (268)
Q Consensus        84 ~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~  126 (268)
                      .+....                      -.+.|...+.+++.++|....+...+-.+-...|+.+
T Consensus        86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~  150 (277)
T PF13226_consen   86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD  150 (277)
T ss_pred             HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence            877542                      3467889999999999999999988887776666544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.47  E-value=2.6  Score=25.91  Aligned_cols=29  Identities=41%  Similarity=0.529  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~   35 (268)
                      +..+...|...-..|++++|+.+|.+++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33445555555556666666666555543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.16  E-value=6.4  Score=24.76  Aligned_cols=11  Identities=9%  Similarity=0.093  Sum_probs=5.1

Q ss_pred             HHHhhCCCCHH
Q 024419           66 TTISLNPQWEK   76 (268)
Q Consensus        66 ~al~~~p~~~~   76 (268)
                      +++...|+.+.
T Consensus        38 q~~~~~pD~~~   48 (75)
T cd02682          38 QIVKNYPDSPT   48 (75)
T ss_pred             HHHHhCCChHH
Confidence            33344555544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.22  E-value=28  Score=31.81  Aligned_cols=91  Identities=20%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-------------------hHHHHHHHHHHHHcCChHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSN-------------------PTLFSNRAAAFLHLVKLNKALA   62 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~~a~~~~~~~~~~~A~~   62 (268)
                      .++--|......+..+.|.+++.++++.-       |..                   ..+.+..+.+.+-.+++..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            34445666677777767777777776541       111                   1334567888889999999999


Q ss_pred             HHHHHHhhC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419           63 DAETTISLN---PQ------WEKGYFRKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        63 ~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~   99 (268)
                      ....+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            888777653   22      36778889999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.95  E-value=35  Score=32.19  Aligned_cols=122  Identities=18%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CC--H
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNP----QW--E   75 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~--~   75 (268)
                      ++..-.+|.+....|++++|++..+.++..-|.+     ..+....|.+..-.|++++|......+.+..-    ..  .
T Consensus       458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~  537 (894)
T COG2909         458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL  537 (894)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            3444567788889999999999999999987765     46788899999999999999999999888732    22  2


Q ss_pred             HHHHHHHHHHHHccC--HHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           76 KGYFRKGCILEAMEQ--YDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        76 ~~~~~la~~~~~~~~--~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      .+....+.++..+|+  +++....|...-..    .|-+.......+.++...-..+.+
T Consensus       538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~  596 (894)
T COG2909         538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLA  596 (894)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh
Confidence            344556788888884  33334444443322    344444444444444433334443

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.94  E-value=2.5  Score=26.63  Aligned_cols=14  Identities=7%  Similarity=0.024  Sum_probs=5.8

Q ss_pred             CChHHHHHHHHHHH
Q 024419           55 VKLNKALADAETTI   68 (268)
Q Consensus        55 ~~~~~A~~~~~~al   68 (268)
                      |++++|+..|..++
T Consensus        20 gny~eA~~lY~~al   33 (75)
T cd02680          20 GNAEEAIELYTEAV   33 (75)
T ss_pred             hhHHHHHHHHHHHH
Confidence            44444444444433

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=84.76  E-value=9.6  Score=32.22  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419           59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        59 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (268)
                      +|+..++.++..+|.|....+.+..+|...|-.+.|...|.
T Consensus       201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~  241 (365)
T PF09797_consen  201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE  241 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44444444555555555555555555555555554444443

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.83  E-value=10  Score=26.45  Aligned_cols=56  Identities=16%  Similarity=0.061  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADA   64 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   64 (268)
                      -+..+|+..++.+++-.++-.|++|+.+..+-               +..-.++|..+..+|+.+-.++++
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYL   73 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYL   73 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHH
Confidence            35567888888888888888888888752110               123445666666666666655555

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.78  E-value=30  Score=30.64  Aligned_cols=66  Identities=8%  Similarity=0.009  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC-CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCC
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISL------NPQ-WEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQS  108 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~  108 (268)
                      -++.+|.++..+|+...|..+|..+++.      +|- .|.+++.+|..++.++. ..++...+.+|-....+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            4566799999999999999999888732      111 36789999999999988 888999988887766443

>PF12854 PPR_1: PPR repeat

Probab=83.54  E-value=3.6  Score=21.18  Aligned_cols=26  Identities=4%  Similarity=0.116  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      ...|..+-..|.+.|+.++|++.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34455555555566666666555543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.90  E-value=29  Score=29.62  Aligned_cols=62  Identities=15%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHH--HHHcCChHHHHHHHHHHHhh
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAA--FLHLVKLNKALADAETTISL   70 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~--~~~~~~~~~A~~~~~~al~~   70 (268)
                      .....+..++..++|..|...++.....-|.+.  ..+..++.+  +....++.+|.+.+++.+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            456788889999999999999999998533333  345555444  45678999999999988775

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.67  E-value=3.3  Score=26.15  Aligned_cols=17  Identities=24%  Similarity=0.376  Sum_probs=9.6

Q ss_pred             HccCHHHHHHHHHHHHh
Q 024419           87 AMEQYDDALSAFQTALQ  103 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~  103 (268)
                      ..|+|++|+.+|..+++
T Consensus        18 ~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          18 QEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            45566666655555553

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12854 PPR_1: PPR repeat

Probab=82.47  E-value=4.9  Score=20.65  Aligned_cols=27  Identities=15%  Similarity=-0.066  Sum_probs=22.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~  100 (268)
                      +...|..+-..+-+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            455788888999999999999998875

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=82.45  E-value=17  Score=29.16  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYT   31 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~   31 (268)
                      .+++-+...|..+++.|++.+|..+|-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            467778889999999999888887763

; PDB: 3LKU_E 2WPV_G.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.30  E-value=4.3  Score=25.65  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIK   35 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~   35 (268)
                      .+..+|-.+-..|+|++|+.+|..+++
T Consensus         8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           8 QFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            344444445555555555555555443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.35  E-value=5.2  Score=25.31  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAI   34 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al   34 (268)
                      .+...|..+-..|+|++|+.+|.+++
T Consensus         8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai   33 (77)
T cd02683           8 EVLKRAVELDQEGRFQEALVCYQEGI   33 (77)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34444444444455555554444433

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=80.73  E-value=18  Score=25.79  Aligned_cols=55  Identities=5%  Similarity=-0.108  Sum_probs=30.8

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      .....|+-++--+.+....+.+..++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3445566555555555555544556677777777777777777777777776543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=80.47  E-value=18  Score=25.58  Aligned_cols=50  Identities=16%  Similarity=0.200  Sum_probs=38.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE   65 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~   65 (268)
                      ..+...+.....+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus        15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~   64 (140)
T smart00299       15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD   64 (140)
T ss_pred             HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence            3445568899999999999999888888888888888765 4455566655

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.19  E-value=20  Score=29.00  Aligned_cols=96  Identities=8%  Similarity=0.064  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHccCHHHH
Q 024419           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFRKGCIL------EAMEQYDDA   94 (268)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A   94 (268)
                      .+.-+.....+++-+|++-.+|..+-.|+..-  .++..-...-++.+..||.|.-+|...-.+.      ..-..+..-
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e  169 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE  169 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence            35567778889999999999999999988765  6677777788999999999877765544343      333344445


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           95 LSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        95 ~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .++-..++..|+.|..+|...-..
T Consensus       170 ~eytt~~I~tdi~N~SaW~~r~~~  193 (328)
T COG5536         170 LEYTTSLIETDIYNNSAWHHRYIW  193 (328)
T ss_pred             HHhHHHHHhhCCCChHHHHHHHHH
Confidence            666677788899999998876443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.14  E-value=4.4  Score=25.80  Aligned_cols=33  Identities=12%  Similarity=0.315  Sum_probs=18.6

Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419           56 KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        56 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      -|++|.....++|..+               ..|+.++|+.+|++++.
T Consensus         4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~   36 (79)
T cd02679           4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR   36 (79)
T ss_pred             HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence            3455555555555544               34566666666666654

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		1e-19
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-18
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-14
1wao_1	477	Pp5 Structure Length = 477		3e-14
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-13
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		8e-13
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-12
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-10
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-08
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-06
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-05
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		5e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		2e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL D +T I L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
           + ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + +K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76
Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ 
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAE 110
           L P W KGY RK   LE + ++++A   ++  L++   NPQ  E
Sbjct: 67  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA
Sbjct: 6   AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ K 
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123
Query: 125 KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETMETAVKSWHET 182
           K   + +        +V  LD     + ++Y     E  K   SF+ E M+     W++ 
Sbjct: 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQ-----WYKD 178
Query: 183 SK 184
            K
Sbjct: 179 QK 180

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA   I 
Sbjct: 16  LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129
           L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ K K   +
Sbjct: 76  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
Query: 130 EV---ENIRSNVD 139
            +   E+ RS VD
Sbjct: 136 AIAGDEHKRSVVD 148

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AE   LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ D 
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
           E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD    + 
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 70  LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
           L+ Q  K +F  G C LE ME YD+A++  Q A
Sbjct: 67  LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 98

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD    + 
Sbjct: 12  LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 70  LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
           L+ Q  K +F  G C LE ME YD+A++  Q A
Sbjct: 72  LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 103

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           MA   E   LK +GN       Y KA  LYTQA+   P+NP   SNRAAA+    +  KA
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64
Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
             DAE    ++P++ K + R G     M  Y  A  A++  ++
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           + K+ GN ++K G+Y KA   Y +A++ DP+N + + N   A+       KA+   +  +
Sbjct: 11  AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
            L+P   K ++R+G        Y  A+  +Q AL+ +P +A+  + +    Q
Sbjct: 71  ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  L+  G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD 
Sbjct: 4   AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
              I  +P + + Y RK     A+++Y  AL     A
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 18  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 77
Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
               + + P   K   R+    E++  + DA   LS       ++  S E  + R + + 
Sbjct: 78  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 137
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
           +       L+KD+ R  +V  + SN  +      F S +
Sbjct: 138 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 174

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 22  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 81
Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
               + + P   K   R+    E++  + DA   LS       ++  S E  + R + + 
Sbjct: 82  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
           +       L+KD+ R  +V  + SN  +      F S +
Sbjct: 142 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 178

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  L+  G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD 
Sbjct: 139 AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
              I  +P + + Y RK     A+++Y  AL     A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
             + ++  G        YD+A+  +Q AL+ +P +AE  + +    Q
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAET 66
           L+ +GNE FK G+Y  A A YTQA+  D +      L  NRAA  L L   +KA  +A  
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119
            I  +    K  +R+   LE + + D A+   Q  +   P++      ++ +S
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P+
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             + ++  G        YD+A+  +Q AL+ +P+SAE 
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
           +K+KG  +FK G Y++A   Y + +           K+  ++ +     F N A  +L L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
            +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+     +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 115 IKRVSQLAKD 124
           I    + AK+
Sbjct: 391 ISMCQKKAKE 400

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
           +K+KG  +FK G Y++A   Y + +           K+  ++ +     F N A  +L L
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
            +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 8  MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
          ++LKDKGN+FF+   Y  A   Y  A++    +P  +SN +A ++ +  L K +  +   
Sbjct: 7  LALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDAL 95
          + L P + K   R+    E + ++ DA+
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAM 93

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL   K   AL D    I+L   
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133
           +     ++G +L    + D+A   F+  L+ NP   E   + +  SQL K    A E + 
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVK----ADEXQR 122
Query: 134 IRSNVDMVQHLDEF 147
           +RS     Q LD F
Sbjct: 123 LRS-----QALDAF 131

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL + K   AL D    I L   
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +     ++G +L    + D+A   F+  L+ NP   E
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++  P+N   + N   A+      ++A+   +  + L P 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
             + ++  G        YD+A+  +Q AL+  P +AE  + +    Q
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQ 122

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
          K++GN  FK G Y +A   Y Q I   P NP  +SN+A A + L +  +A+
Sbjct: 8  KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL   K   AL D    I L   
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +     ++G +L    + D+A   F+  L+ NP   E
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL +  N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            ++P +   Y   G  L+ M+    AL  +  A+Q NP  A+    +  +
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           D GN     G   +A A Y +AI+  P+    +SN    F    ++  A+   E  ++L+
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           P +   Y   G +L+    +D A++A+  AL  +P  A V   +  V
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-40
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  144 bits (364), Expect = 2e-43
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL 
Sbjct: 11  KRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ 
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128

Query: 123 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155
           K K   + +        +V  LD     + ++Y
Sbjct: 129 KQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 161

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  141 bits (359), Expect = 4e-43
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +  E  LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D
Sbjct: 3   QVNE--LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
              T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +  
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  141 bits (357), Expect = 1e-42
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             A+E   K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL 
Sbjct: 11  ELAQE--EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           D +T I L+ ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++   +
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  140 bits (356), Expect = 2e-42
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             A    +K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL 
Sbjct: 14  DLALM--VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R     
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131

Query: 123 KD 124
            +
Sbjct: 132 YN 133

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  144 bits (364), Expect = 5e-42
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 10/236 (4%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           +  A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +AL
Sbjct: 1   SPSAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 58

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           AD    + L+ Q  K +F  G     ME YD+A++  Q A     +           +  
Sbjct: 59  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
              KKR   +E  R + +   H    +   +E+    E  +       +      +    
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVD--------KAFESPHTHGSCFQFLRQY 229
            +K D  +  + +      EK       D        +    P    S   + R+ 
Sbjct: 179 EAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKD 234

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  140 bits (354), Expect = 8e-42
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
             E+++  LK +GN       Y KA  LYTQA+   P+NP   SNRAAA+    +  KA 
Sbjct: 8   TPESDK--LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVS 119
            DAE    ++P++ K + R G     M  Y  A  A++  ++      S  + R ++   
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125

Query: 120 QLAKDKKRAQEVE 132
           +  ++  R  E  
Sbjct: 126 RKIEEANRGAEPP 138

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  138 bits (351), Expect = 1e-41
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           +  A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +AL
Sbjct: 6   SPSAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQ 120
           AD    + L+ Q  K +F  G     ME YD+A++  Q A     +        I    +
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123

Query: 121 LAKDKKRAQEVENIR 135
           +AK KKR   +E  R
Sbjct: 124 IAK-KKRWNSIEERR 137

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  136 bits (345), Expect = 8e-41
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           AEAE   LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ 
Sbjct: 10  AEAER--LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K      
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

Query: 123 KD 124
           ++
Sbjct: 128 RE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  135 bits (341), Expect = 2e-40
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           + +AEE   + +G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+
Sbjct: 1   SMKAEE--ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVS 119
           AD    I  +P + + Y RK     A+++Y  AL     A   +    +   +R+I ++ 
Sbjct: 59  ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118

Query: 120 QLAKDKK 126
             A  ++
Sbjct: 119 YKASQQR 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  129 bits (326), Expect = 7e-38
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLN 58
           A+  E+  L+ +GNE FK G+Y  A A YTQA+  D +      L  NRAA  L L   +
Sbjct: 25  ASSVEQ--LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82

Query: 59  KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           KA  +A   I  +    K  +R+   LE + + D A+   Q  +   P++      ++ +
Sbjct: 83  KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142

Query: 119 S 119
           S
Sbjct: 143 S 143

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  117 bits (294), Expect = 3e-33
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
             +A +   K+ GN+ +K  ++  A   Y +A + DP+N T  +N+AA +      NK  
Sbjct: 1   GKQALK--EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR 58

Query: 62  ADAETTISLNPQWE-------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
              E  I +  +         K Y R G      E+Y DA+  +  +L  +  + +V +K
Sbjct: 59  ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK 117

Query: 115 IKRVSQLAKDKKR 127
            ++  ++ K+++R
Sbjct: 118 CQQAEKILKEQER 130

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  124 bits (312), Expect = 6e-33
 Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 19/233 (8%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
              AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL
Sbjct: 3   LKRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
            DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

Query: 122 AK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMET--AVK 177
            K    +RA   +  + +V     ++    E        E  K   SF+ E M+     K
Sbjct: 121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

Query: 178 SWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-----HGSCFQF 225
             H         Y +L + K    K + +V          T     HG   QF
Sbjct: 181 KLHR-----KCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHG---QF 225

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  115 bits (289), Expect = 1e-32
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           ++ E+   K++GN  FK G Y +A   Y Q I   P NP  +SN+A A + L +  +A+ 
Sbjct: 2   SQFEK--QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
             +  +      E    R       +E    A+ + Q  +    +  E   +
Sbjct: 60  MCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDR 110

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  109 bits (275), Expect = 2e-30
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           M   A     KD GN  +K  ++ KA   Y +AI+ DPSN T ++N+AA +    K  + 
Sbjct: 4   MTDAAIA--EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 61  LADAETTISLNPQWE-------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           +   E  + +  +         K   R G   +       A+  F  +L       E+ +
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120

Query: 114 KIKRV 118
           K+K +
Sbjct: 121 KVKEL 125

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  106 bits (267), Expect = 8e-28
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           + +G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD    I  
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +P + + Y RK     A+++Y  AL     A   + +   
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E    K +GN+F+KA  + +A   Y +A +    + T  +NRAAA     +   A++
Sbjct: 5   ADKE----KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIS 59

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE------VSRKIK 116
                +    +    Y         +      L   +  ++Y  +S        +  K++
Sbjct: 60  TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLR 119

Query: 117 RVSQLAKDKKRA 128
              +  K  +  
Sbjct: 120 NAEKELKKAEAE 131

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 13/98 (13%), Positives = 28/98 (28%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             +   K  N  K           +P            +        A+      I   P
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +  +GY  +   L  +  + +A++    A++ +P    
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.3 bits (173), Expect = 2e-14
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K     F + GN         + I+    + T     A     L    K L  AE    +
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYV 134

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           NP+  +    +G        + +A+ A+   ++  P+ A 
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 12/79 (15%), Positives = 31/79 (39%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +     K  ++ +A A   +AI++DP+    +  +A A + + +   AL   +   + + 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 73  QWEKGYFRKGCILEAMEQY 91
           +   G   +       +  
Sbjct: 239 EVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 38  PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA 97
            S           F    + ++A+        L+         +        +Y+ A+S 
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 98  FQTALQYNPQSAE 110
              A++   +   
Sbjct: 61  LNDAVEQGREMRA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 2e-27
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E+    + G +   AG    A + +  A+  DP N   +  RA  FL + K   AL 
Sbjct: 1   ADVEK--HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 58

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D    I+L   +     ++G +L    + D+A   F+  L+ NP   E      ++ +  
Sbjct: 59  DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118

Query: 123 KDKKRAQ 129
           + ++   
Sbjct: 119 EMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADA 64
            L +   E  + G Y  A + Y   +K +PS               F    K  +A+   
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              + + P        +       E YD+A+  ++ A ++N    ++   +++  +L K 
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 125 KKR 127
            ++
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 22/125 (17%), Positives = 51/125 (40%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           E   L+ +  + F   +Y  A     + ++    +  L   RA  F+   +  KA++D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
               L     + +++   +   +  ++ +LS  +  L+ +          K+V +L K  
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

Query: 126 KRAQE 130
           + A+E
Sbjct: 239 ESAEE 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F K G   KA +    A K    N   F   +  +  L     +L++    + L+ 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 73  ------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
                       +           L    +Y DA S +++ ++  P  AE + + 
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR---------------AAAFLHLVKL 57
           +G+   K G   +A   + + +K +PS                       A         
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             A+   +  + +     +    +        +   A+S  + A +    + E
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F   G    A    T+ I            R    L   KL++A  D +  +  NP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 73  QWEKGYFRKGCILEA---------------MEQYDDALSAFQTALQYNPQSAEV 111
             ++    +  +++A                  Y  A++     L+     AE+
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  106 bits (267), Expect = 1e-26
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E+    + G +   AG    A + +  A+  DP N   +  RA  FL + K   AL 
Sbjct: 24  ADVEK--HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV---SRKIKRVS 119
           D    I L   +     ++G +L    + D+A   F+  L+ NP   E      ++ +  
Sbjct: 82  DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141

Query: 120 QLAKDKKRAQEVENIRSNVDMVQHLDE 146
           ++ + + +A            +  LD+
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDK 168

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 99.0 bits (247), Expect = 6e-24
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADA 64
            L +   E  + G Y  A + Y   +K +PS               F    K  +A+   
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              + + P        +       E YD+A+  ++TA ++N    ++   +++  +L K 
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378

Query: 125 KKRA 128
            ++ 
Sbjct: 379 SQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 24/125 (19%), Positives = 53/125 (42%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           E   L+ +    F +G+Y  A A   + ++    +  L   RA  F+   +  KA++D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
               L     + +++   +   +  ++ +LS  +  L+ +          K+V +L K  
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261

Query: 126 KRAQE 130
           + A+E
Sbjct: 262 ESAEE 266

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F K G   KA +    A K    N   F   +  +  L     +L++    + L+ 
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

Query: 73  QWEKGY------------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
             ++ +                  L    +Y DA S +++ ++  P  AE + + 
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---------------FSNRAAAFLHLVKL 57
           +G+   K G   +A   + + +K +PS                     ++A         
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             A+A  +  + +     +    +        +   A+S  + A +    + E
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F   G    A    T+ I+           R    L   KL++A  D +  +  NP
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 73  ---------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                             +    +         Y  A++     L+     AE+
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           AE    S +   + F K    ++A  + ++ ++ +P N     +RA A+L     ++A+ 
Sbjct: 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK-IKRVSQL 121
           D ET    N   ++           ++Q           ++ N +  E+ +   K   Q 
Sbjct: 351 DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410

Query: 122 AKDKKRAQE 130
             D  + +E
Sbjct: 411 HPDNFQNEE 419

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 44  FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
             +            +++AD E            +   G  L A  Q  DALS F  A+ 
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVD 54

Query: 104 YNPQSAE 110
            +P +  
Sbjct: 55  GDPDNYI 61

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  106 bits (266), Expect = 2e-26
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           ++LKDKGN+FF+   Y  A   Y  A++    +P  +SN +A ++ +  L K +  +   
Sbjct: 7   LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAF-QTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           + L P + K   R+    E + ++ DA+      +L  +   A +   ++R        K
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
             ++  +I +       L    ++  +          
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 82.5 bits (204), Expect = 4e-18
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L+  G   F   + L A     +AI+  P     +   A          +     +  + 
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALK 298

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L+      Y+ +G +   ++ YD A   F  A + +P++  
Sbjct: 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.7 bits (202), Expect = 7e-18
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 9/108 (8%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---------LVKLNKALAD 63
                    ++ KA   Y  AI+ +     ++   A              +    +A   
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            E    L+P+ E+       +    E  D+A++ F+ +        E 
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 19/99 (19%), Positives = 42/99 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                    +  +    + +A+K D +N +++ +R      L   ++A  D +    L+P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    Y +  C+     ++DD  + F  A +  P++ EV
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 18/99 (18%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G   F   NY +A   + +A + DP N   +   A       K +             P
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  +       IL     +D AL  +  A++   +   +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                ++   +     L+++A ++ P  P + +  A         +KAL   +  I L  
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 73  QWEKGYFRKGCIL---------EAMEQYDDALSAFQTALQYNPQSAE 110
           + +  Y     ++           +E + +A +  + A + +P+S +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 12  DKGNEFFKA-GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
                F KA   + +      +  K          +             A  D +  I L
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            P+    Y     I+       +  + F  AL+ +  ++ V
Sbjct: 267 FPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 14/119 (11%), Positives = 25/119 (21%), Gaps = 12/119 (10%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH------- 53
              + E +        FF         A Y ++ + D       SN              
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210

Query: 54  -----LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                     + L        L  +        G           A    + A++  P+
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 99.8 bits (249), Expect = 5e-24
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 1/153 (0%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 22  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 81

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA-LQYNPQSAEVSRKIKRVSQLA 122
               + + P   K   R+    E++  + DA+       L  +   A +   ++R     
Sbjct: 82  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141

Query: 123 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155
             K   + +         V   +   +     +
Sbjct: 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 19/99 (19%), Positives = 36/99 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                    N  +    + +A+  +P  P  + +R   +  L     A  D +   SLNP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    Y +  C+L    ++ ++ + F       P   EV
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L   G   F   N L A  L  ++I   P  P  +   A          +     +  + 
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVD 304

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           LNP++   Y+ +G +   ++ Y +A   FQ A   NP++  
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 16/115 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----------------K 56
                   G++  A   Y  A + +     +                            K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            N A+        L+P+ E+       +   ME+ D+A+  F+ +        E 
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.6 bits (181), Expect = 5e-15
 Identities = 17/99 (17%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +F   +Y  A   + +A   +P N   +   A       K  ++ A    T    P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
              +       IL     +D A+  +  A +      ++
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                +K G + ++ A + +   + P+ P + +  A         + A+   +    L  
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 73  QWEKGYFRKGCILE----------------AMEQYDDALSAFQTALQYNPQSAE 110
             EK +   G ++                   E+++ A+     A + +P+S +
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVKLNKALADAETTISLNPQWEK 76
           G+++       Q     PS    ++    NR   F      N+A+   +  I L+P    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 77  GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            Y        +    +  +     AL+  P  ++
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 1/111 (0%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           + +  +E  L            Y    +  T       +                 L  A
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
               + +I+L+P     Y      L   E   +    FQ A+  NP+    
Sbjct: 263 QVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 2/96 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH--LVKLNKALADAETTISL 70
           + +    + NY  A AL + A+++  S        A   L       +  L+       L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                      G          DA    Q ++  +P
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +         +  A  L T+A + DP +       A   L + K+++A+   E +  L  
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             ++    +        +    L A          +   
Sbjct: 494 TMDEKL--QATTFAEAAKIQKRLRADPIISAKMELTLAR 530

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 94.5 bits (235), Expect = 8e-24
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFL 52
            +K++GNEFFK     +A   Y +A+                       +   N A  + 
Sbjct: 40  DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                 KA+  A   + ++    K  ++ G         ++A      A   NP + ++ 
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159

Query: 113 RKIKRVSQLAKDKKRAQ 129
              +      K+ ++  
Sbjct: 160 NSYELCVNKLKEARKKD 176

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 93.2 bits (232), Expect = 8e-24
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAI------------------KQDPSNPTLFSNRAAA 50
           +L+ KGNE F   +Y +A   Y  A+                  + D  N  L++N +  
Sbjct: 13  ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC 72

Query: 51  FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +L++  L++A   +   +      EK  FR+     A  + D+A    +  L+ +P +A 
Sbjct: 73  YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132

Query: 111 VSRKIKRVSQLAKDKKRAQE 130
           V  +  ++    + +K+A  
Sbjct: 133 VVAREMKIVTERRAEKKADS 152

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 92.3 bits (229), Expect = 5e-22
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---------------TLFSNRAAAFLHL 54
           +K++G  +FK G Y +A   Y + +                          N A   L L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209

Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
              + A+      + L+   EKG  R+G    A+  ++ A + FQ  LQ  P +     +
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269

Query: 115 IKRVSQLAKDKKRAQ 129
           +    Q  + +   +
Sbjct: 270 LAVCQQRIRRQLARE 284

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 28/103 (27%), Positives = 44/103 (42%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L    +  F+     ++A   T AIKQ+P     +SN    +    +L +A+      +
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            L P +  GY      L A    + A+ A+ +ALQYNP    V
Sbjct: 95  RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.5 bits (210), Expect = 5e-19
 Identities = 18/100 (18%), Positives = 43/100 (43%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           +  +  ++AG++  A     Q  +Q+P N  +    ++      +L+++   +   I  N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           P   + Y   G + +   Q  +A+  ++ AL+  P   + 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.1 bits (209), Expect = 6e-19
 Identities = 21/98 (21%), Positives = 42/98 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN + + G   +A   Y  A++  P     + N AAA +    +  A+    + +  NP
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G +L+A+ + ++A + +  A++  P  A 
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                  AG+   A   Y  A++ +P    + S+       L +L +A A     I   P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +   +   GC+  A  +   A+  F+ A+  +P   +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 16/98 (16%), Positives = 42/98 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N   + G+  +A   Y  A++  P++    +N A        + +A+      + + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           ++   +     +L+   +  +AL  ++ A++ +P  A+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 27/99 (27%), Positives = 46/99 (46%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN     G   +A A Y +AI+  P+    +SN    F    ++  A+   E  ++L+P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   Y   G +L+    +D A++A+  AL  +P  A V
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.1 bits (196), Expect = 4e-17
 Identities = 20/99 (20%), Positives = 36/99 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
               +++ G    A   Y +AI+  P  P  + N A A      + +A     T + L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                      I       ++A+  ++ AL+  P+ A  
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.4 bits (194), Expect = 8e-17
 Identities = 22/98 (22%), Positives = 40/98 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN   +A  + +A A Y +A+   P++  +  N A  +     ++ A+      I L P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +   Y      L+      +A   + TAL+  P  A+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 18/98 (18%), Positives = 36/98 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F   G    A   + +A+  DP+    + N           ++A+A     +SL+P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                +    C+       D A+  ++ A++  P   +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I ++P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 73  QWEKGYFRKGCILEAME 89
            +   Y   G  L+ M+
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAI------KQDPSNP----------TLFSNRAAAFL 52
            LK+ GN FFK+ N+  A   YT+ +      +    +           +   N  A  L
Sbjct: 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 284

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            +     A+      + ++P   K  +R+    + +++YD AL+  + A +  P+   + 
Sbjct: 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344

Query: 113 RKIKRVSQLAKDKKRAQ 129
            ++ +V Q  K +K  +
Sbjct: 345 AELLKVKQKIKAQKDKE 361

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 18/122 (14%), Positives = 34/122 (27%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L   G   ++AG +  A  ++      D  +   F    A    L    +AL       
Sbjct: 20  QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            ++    +  F        +   D A S F +A               R   + +     
Sbjct: 80  LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139

Query: 129 QE 130
           ++
Sbjct: 140 KD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 7/84 (8%), Positives = 19/84 (22%)

Query: 28  ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87
                                       K + A    +    L+    + +   G   ++
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 88  MEQYDDALSAFQTALQYNPQSAEV 111
           +  Y+ AL ++      +      
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRF 88

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET---TIS 69
             +  FK  NY +A  ++ +   +  ++P +++ RA  +  L K + A  D ET    ++
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                   +   G IL    Q   A+  +Q A+  +    +
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 19/98 (19%), Positives = 33/98 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    K G    A   Y  A+ +D +   ++    + F +      A+   E  I    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K ++  G      ++Y  A S+F   L+  P    
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ F+  GN+  A     + I+   ++P +F     A+ +  +  KA +     + L P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173

Query: 73  QWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAE 110
               GY  +     A     +   A   ++  ++       
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 8/101 (7%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNY---LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   +++   Y    K    Y   +    +    F       +   + + A+   +  + 
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +      Y + G        +  A+   +  ++      +
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTIS 69
            G  ++    Y+KA + + + ++  P+    +  RA A        K   A    E  I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 70  L--------NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +          +  +                 A +A++  L  +P + +
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 3/74 (4%)

Query: 40  NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99
           N  +    A          +A+       +        Y R+      + +YD A    +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 100 T---ALQYNPQSAE 110
           T    +      + 
Sbjct: 62  TYFSKVNATKAKSA 75

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 8/81 (9%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTL--------FSNRAAAFLHLVKLNKALADAETTISL 70
                  A   Y + I+                    A  +       KA A  +  ++L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 71  NPQWEKGYFRKGCILEAMEQY 91
           +P  +K        LE    +
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 80.8 bits (199), Expect = 8e-18
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFL 52
            K  GN  FK     +A   Y  AI     +                      N AA  +
Sbjct: 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI 241

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            L + ++A+      ++   +  K  FR+G     + Q D A   F+ A +Y P    + 
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301

Query: 113 RKIKRVSQLAKDKKRAQ 129
           R+++ +++  K   + Q
Sbjct: 302 RELRALAEQEKALYQKQ 318

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.1 bits (196), Expect = 9e-18
 Identities = 24/110 (21%), Positives = 51/110 (46%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
            +    M+   +     + G+Y KAA  +T+AI+++  +   + N A     + +L +AL
Sbjct: 18  GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           A  +  + L+      Y+  G +    E Y +A   F+ AL+   ++ ++
Sbjct: 78  AFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 23/98 (23%), Positives = 40/98 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN +     Y +A  ++ +A++    N  LF       + L +   AL   +  + LN 
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              +  F+ G  L      D+ALS F    + +P  A+
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 20/98 (20%), Positives = 36/98 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N         +A A Y +A++ D S  T +      ++      +A    E  +    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +    ++  G +L  +EQ   AL   Q A++ N    E
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    K      A     +A++ + ++            +   L++AL+        +P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                ++  G      E  + AL     A+   P    
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G      G   +A + +    +QDP +   F N    + +     KAL   +  I + P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 73  QWEKGYFRKGCILEAMEQY 91
                   K  +      +
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 17/101 (16%), Positives = 38/101 (37%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L  K +  F    ++   A+ T+ ++ DP N  ++    A+     + NK    +   + 
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +P+    +   G     + +  +A   F  +   +PQ   
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 14/98 (14%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                 ++G   K   +    + + P     +      +L + K+++A      + +++P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q+   +           ++D A+SA+ TA +    +  
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 7/113 (6%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIK-------QDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
            G   F   +   A   +  A+         +      ++N   A+  L   + A+    
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
             + L+      +     +    +    A++    +L  +P     S  +KR 
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 15/103 (14%), Positives = 29/103 (28%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL           + L+ A  Y  +I     +  L   +A       +    LA     +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            ++P     Y      L    + +         +  +P+ A  
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 13/99 (13%), Positives = 30/99 (30%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +       +A   ++++   DP     +   A +F    + ++A++   T   L  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                Y   G     +     A    Q++         +
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 15/100 (15%), Positives = 32/100 (32%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             + F   G + +A + YT A +        +       + L  +  A    +++ +L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                    G +         A++ FQ AL    ++    
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA---ETTIS 69
           +G  +    N+ +A   Y +A+  D      F    +  L        L       T   
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +  + +  +       + E        + +++    +S+++
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 12/74 (16%), Positives = 26/74 (35%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ + K   Y  A     Q +    ++  + +  A  +LH      A+     +++++P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 73  QWEKGYFRKGCILE 86
                       LE
Sbjct: 582 NEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
              +   G+Y +A  L T+    + S+   +   A   + L     AL     T      
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 74  WEKG----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            +                   + +G +   +  +D A   ++ AL  + +  E   ++  
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242

Query: 118 VSQLAKDKKRAQ 129
              L  D++   
Sbjct: 243 NHLLTADEEWDL 254

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 19/107 (17%), Positives = 45/107 (42%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           + ++++++ +   F     Y +   L   A++ +P++  L ++    +      + A A+
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
               + L P   + + + G  L    +  +AL A+  AL  NP    
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    K  N  +AA  +    +  P     + +         K   A+        L+P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    +             + AL++ +  L   PQ  ++
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +  + NY  AAA   +A++  P +  L++   A   +  +  +AL      + +NP
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +  +        M QYD A      A+        
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 17/91 (18%), Positives = 28/91 (30%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
           G+ L+    Y                   + L L  L +A    E      P+ E+ +  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            G      E+   A+ A   A   +P+   V
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +      A      A   DP +  + +  A +  +    N ALA     +   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 73  Q---------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           Q                +     +     A  +Y +  +    AL+ NP  A++
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS---------------NRAAAFLHLVKL 57
                    N   A A     +   P    L S               +    F    + 
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +        + +NP   + +   G +      YD A +  + A++  P  A+
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +A   Y +A+  +P    +  N A ++ ++ + + A       I +  
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271

Query: 73  QWEKGYFRK------------GCILEAMEQYDDALSAFQTALQ 103
                                  +L  M + D     +   ++
Sbjct: 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 72.5 bits (179), Expect = 1e-16
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G   + AGNY ++  L+ +AI+ DP     +  +  A  +L +  +A+      I++  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 73  --QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
               +  +  K   L  +E  +      +   +    
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 57.1 bits (139), Expect = 7e-11
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 37  DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96
              NP  +              +++   E  I L+P+  K +  KG  L  +E+Y++A+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 97  AFQTALQYNP 106
            +   +    
Sbjct: 62  CYNYVINVIE 71

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  Q  + Y+ +G +      Y +++  F+ A+Q +P+ ++ 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.4 bits (184), Expect = 2e-16
 Identities = 20/98 (20%), Positives = 38/98 (38%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG    KAG Y +A  L  Q    D  +  +  +   A++    +++     E +++  P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K     G     +++YD A+       + NP +  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.5 bits (179), Expect = 9e-16
 Identities = 18/98 (18%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  + +   Y  A  L  +  + +P N  +      A  +L + ++A+   +  + L P
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K +       E M ++++AL  F+ A + +  ++ 
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.5 bits (179), Expect = 9e-16
 Identities = 20/98 (20%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  + K G   +   L  +++   P N  + +     ++ + K + A+         NP
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                 FR G  L+ + ++D+A+ +F+ AL   P   +
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 7/77 (9%), Positives = 21/77 (27%)

Query: 34  IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93
           +  D      + ++  +     + ++A+   E     +          G         D 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 94  ALSAFQTALQYNPQSAE 110
                + +L   P + +
Sbjct: 61  GTELLERSLADAPDNVK 77

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 6/44 (13%), Positives = 14/44 (31%)

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  +   +  Y  KG       +Y  A+   +     +    +V
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 19/125 (15%), Positives = 41/125 (32%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L       +++G Y  A  ++      D  +   F    A    + + + A+       
Sbjct: 23  QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            ++    +  F     L    +  +A S    A +      E      RVS + +  K  
Sbjct: 83  VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142

Query: 129 QEVEN 133
           +E+++
Sbjct: 143 KEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 11/91 (12%), Positives = 22/91 (24%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
           G             +          + A           A    +    L+    + +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            G   +AM QYD A+ ++      +      
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 74.7 bits (184), Expect = 6e-16
 Identities = 16/99 (16%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +   G    A   ++QA+   P  P +F+            + A    ++ + L+P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   +  +G  L    +   A        Q +P     
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
                         A   Q +      D     L   R   +  L     A  D    ++
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           + P   + +   G  L     +D A  AF + L+ +P    
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 22  NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGY 78
           +  +A  +  Q  ++       ++       ++     + +  ADA    SL     +  
Sbjct: 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 79  FRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           F  G    ++   D A + F+ A+  N  +  
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +AGN+  A   +   ++ DP+      NR  A  +  +   A  D       +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        + +++   A    +   + + +   
Sbjct: 143 NDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 12/84 (14%), Positives = 22/84 (26%)

Query: 16  EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
              +     +  A  T                   +L L  L+ A A  +  ++ N    
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249

Query: 76  KGYFRKGCILEAMEQYDDALSAFQ 99
             +      L  + Q  D L+   
Sbjct: 250 VEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 48  AAAFLHLVKLNKALADAE----TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
           A      ++    LA  E    +    + +  +  + +G + +++     A + F  AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 104 YNPQSAEV 111
             P   EV
Sbjct: 72  IRPDMPEV 79

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
            G  +   G+   A AL+  A+  +  N             L +    LA+++
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 16/99 (16%), Positives = 32/99 (32%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    + G+   A  L+  A++QDP +   +           +   A++     + L P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             +                  A    +  L+Y P  A +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 23/115 (20%), Positives = 46/115 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F  +G Y KA   +T A+   P++  L++   A   +  +  +A+A     + L P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
            + +  +  G     +  + +A+  F  AL    +S     +   +S+      R
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISL 70
                     +L+   L+  A++ DP++  P +       F    + +KA+      +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            P     + + G  L    Q ++A++A++ AL+  P    
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 9e-13
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVK 56
           + AE EEM+ +D     + +      +A Y +  + +  NP              L    
Sbjct: 20  LQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L  A+   E  +  +P+  + +   G      EQ   A+SA +  L+  P +   
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +    L A +   + ++  P N T     A +F +     +A       +   P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 73  QWEKGYFRKGCI---------------LEAMEQYDDALSAFQTALQYNPQSAE 110
            +                         L +   + +    F  A++ +P S +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 15/98 (15%), Positives = 23/98 (23%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q            +A+E     L     A    PQ   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV 311

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 13/98 (13%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q            +A+E     L     A    P+   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 13/98 (13%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +            +A+E     L     A    PQ   
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 15/98 (15%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                           +  QA    P      ++       L  + + L        L P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q        G   +A+E     L     A    PQ   
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 12/99 (12%), Positives = 22/99 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +            +A+E     L     A    P+    
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 14/101 (13%), Positives = 23/101 (22%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P      ++       L  +   L        
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L P+        G   +A+E     L     A    PQ   
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 16/101 (15%), Positives = 25/101 (24%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   G          +   +  QA    P      ++       L  + + L        
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L PQ        G   +A+E     L     A    PQ   
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 7/128 (5%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   G          +   +  QA    P      ++       L  + + L        
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLA 122
           L P+        G   +A+E     L     A    P+            + ++ V +L 
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432

Query: 123 KDKKRAQE 130
               +A  
Sbjct: 433 PVLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.8 bits (171), Expect = 9e-14
 Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++ +     L  + + L        L P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
           Q        G   +A+E     L     A    PQ            + ++ V +L    
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 126 KRA 128
            +A
Sbjct: 368 CQA 370

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.1 bits (164), Expect = 7e-13
 Identities = 16/94 (17%), Positives = 23/94 (24%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           Q        G    A+E     LS    AL    
Sbjct: 444 QQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 7/127 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G        +    AL    +   P      ++       L  + + L        L P
Sbjct: 44  RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
           Q            +A+E     L     A    P+            + ++ V  L    
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 126 KRAQEVE 132
            +A  + 
Sbjct: 164 CQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 13/100 (13%), Positives = 21/100 (21%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
                          A  L    ++ D       + R              A     ++L
Sbjct: 8   HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            P+            +A+E     L     A    PQ   
Sbjct: 68  TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 14/104 (13%), Positives = 30/104 (28%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +     +F+  G   +A   +      D  N       AA +    +  +A        +
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L        F  G     ++    A   F+  +Q++       +
Sbjct: 99  LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 9/105 (8%), Positives = 26/105 (24%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
            +++ +  +      + + + A                 + A  F +  ++ +A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
               +            I +  EQ+  A   +  A          
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAI---------------KQDPSNPTLFSNRAAA 50
           +   +K+KG  +FK G Y++A   Y + +                 +      F N A  
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 51  FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +L L +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+  
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 111 VSRKIKRVSQLAKDKKRAQ 129
              +I    + AK+     
Sbjct: 387 ARLQISMCQKKAKEHNERD 405

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 74.5 bits (182), Expect = 2e-15
 Identities = 30/102 (29%), Positives = 47/102 (46%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL +  N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            ++P +   Y   G  L+ M+    AL  +  A+Q NP  A+
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 40/98 (40%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            +   + G   +A   Y +AI+  P+    +SN       +  +  AL      I +NP 
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +   +     I +      +A+++++TAL+  P   + 
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 39/101 (38%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN   +  +   A   YT+AI+ +P+     SN A+       + +A+A   T + L P
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
            +   Y      L+ +  + D     +  +       E +R
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 11/75 (14%), Positives = 32/75 (42%)

Query: 37  DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96
            P++    +N A        + +A+      + + P++   +     +L+   +  +AL 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 97  AFQTALQYNPQSAEV 111
            ++ A++ +P  A+ 
Sbjct: 65  HYKEAIRISPTFADA 79

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +       +   ++     L +  +++DP + +         + L K N+    +   + 
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 70  LNPQWEKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQSAE 110
           L P     +F  GC    +  + + A      A         
Sbjct: 85  LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.2 bits (162), Expect = 9e-13
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIK---------QDPSNPTLFSNRAAAFLHLVKLNKALAD 63
            G   F+ G +  A   +  A++                L +N       L K  +AL  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
               + L PQ    Y   G I   M  +++A+  F TAL            +   
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 14/102 (13%), Positives = 26/102 (25%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ F     + +A A Y  A +               +        A       +S+ P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
           +        G +     ++  A   F  AL+           
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 13  KGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
            G  +   G+  + A    ++A   + +    +     +F    + ++A+A   T   L 
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                     G           A   F  AL   P+   V
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 8/91 (8%), Positives = 25/91 (27%), Gaps = 1/91 (1%)

Query: 21  GNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79
           G+Y K +  +  +++     N  +  + A    +              +  +P       
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                L  + + ++        +   P +  
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 15/86 (17%), Positives = 26/86 (30%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+   K   Y +A   + QA+   P N + +S        +     A+    T + L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAF 98
                    G  +E      +A    
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G +  K G+          AI QDP +   +               A+   +  + L P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
              K                DA  A +  ++ NP+               +R+S+   D 
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 126 KRAQEVEN 133
              + V+ 
Sbjct: 191 SVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F  +G + +A   +  A+   P + +L++   A   +  +  +A+      + + P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +  +  G     +  Y +A+S F TAL    +S  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 5/115 (4%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVK 56
           M AE EEM+ +       +        +   +       NP              L    
Sbjct: 22  MQAEWEEMA-RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGD 80

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L   +   E  I  +P   + +   G      E    A+ A Q  L+  P + + 
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETT 67
            +        +        LY +A  Q+    +P L +     F    + N+A+      
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +++ P+    + R G  L   ++ ++A+ A+  AL+  P    
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
               +    +   A       IKQ+P    L  N+  +     +++K+  D+     +  
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 73  QWEK------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +                 G +     +++ A+ AF  AL   P+   
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +A   YT+A++  P       N   + ++L    +A+++  T +SL  
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 73  QWEKGYFRKGCI------------LEAMEQYDDA-------LSAFQTALQYNP 106
           +                       L  M+Q +         L     A   +P
Sbjct: 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 8   MSLKD------KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           MSL +      +G       ++  A   ++        +  +  N    +  L  + +A 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAE 57

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                +I+ +      YF++G +    E+YD A+   + AL    
Sbjct: 58  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 16/113 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +    N  +A   +T++I +D      +  R   +    K + A+ D +  +    
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

Query: 73  ----------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109
                              +  +    +    E++  A      A     +  
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 32/131 (24%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTL----------------FSNRAAAFLHLVK 56
           +G  +++   Y  A     +A+ Q   N  +                  N A  +    +
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
             KA        S+  +                  D A+        Y P    V R  +
Sbjct: 137 WKKAEEQLALATSMKSEPRHSK------------IDKAMECVWKQKLYEPVVIPVGRLFR 184

Query: 117 ----RVSQLAK 123
               +V+QLAK
Sbjct: 185 PNERQVAQLAK 195

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 68.6 bits (169), Expect = 6e-15
 Identities = 26/98 (26%), Positives = 51/98 (52%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              + ++  G        YD+A+  +Q AL+ +P +AE
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 51.6 bits (125), Expect = 8e-09
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 37  DPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           DP N    + N   A+      ++A+   +  + L+P   + ++  G        YD+A+
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 96  SAFQTALQYNPQSAE 110
             +Q AL+ +P +AE
Sbjct: 64  EYYQKALELDPNNAE 78

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 73  QWEKGYFRKGCIL 85
              +     G   
Sbjct: 109 NNAEAKQNLGNAK 121

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 26/98 (26%), Positives = 52/98 (53%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +  + ++  G        YD+A+  +Q AL+ +P+SAE
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
           +  + ++  G        YD+A+  +Q AL+ +P+S
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 44  FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
           + N   A+      ++A+   +  + L+P+  + ++  G        YD+A+  +Q AL+
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 104 YNPQSAE 110
            +P+SAE
Sbjct: 64  LDPRSAE 70

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL-NKALADAETTI 68
           L+         G    A  +Y + ++ +  N          +    +   K L      +
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
           S   + +   +R G       +Y+ A ++ Q  +   P S E  + + ++ ++ K+  R
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 16/115 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSN----------------PTLFSNRAAAFLHLVK 56
           K +   +AG   +A + + Q I  +                     L +  A A+     
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +KA    +  +   P           +     Q  DAL  ++  LQ    +   
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 1/130 (0%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
            +E       +    + K  NY KA   Y + +++ P+N       A   +   +   AL
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 62  ADAETTISLNPQWEKGYFRKGCIL-EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
              E  + L           G       EQ    L      L    +      +      
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168

Query: 121 LAKDKKRAQE 130
                ++A+ 
Sbjct: 169 FTTRYEKARN 178

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 16/82 (19%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK----------------GCILEAME 89
            + +A +   +  +A++    TI+LN    + Y+                      +   
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 90  QYDDALSAFQTALQYNPQSAEV 111
            YD A   ++  LQ  P + + 
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDC 90

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 70.3 bits (172), Expect = 6e-14
 Identities = 13/92 (14%), Positives = 32/92 (34%)

Query: 20  AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79
             +  +       A++  P +   +   A A L +          +  ++L+P   +   
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           R G +    +++ +A    Q A    P+   +
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            +     G+         + +   P +P   +          +  +A    +      P+
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                   G  LE   Q + A +A+  A Q  P+   +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 1/108 (0%)

Query: 26  AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85
                   + Q   N  L       +    + + AL      +  +P +   +   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 86  EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133
           +       A  A+++ L       +     K +    +   R   +E+
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVV-KELQVFLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +       E  ++         F  G      EQ+D AL   + AL ++P  + 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 13/102 (12%), Positives = 23/102 (22%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++              +   +  QA    P      ++       L  + + L       
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH 287

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            L P         G   +A+E     L     A    P    
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.0 bits (163), Expect = 9e-13
 Identities = 12/101 (11%), Positives = 22/101 (21%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P+     ++       L  + + L        
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L P             +A+E     L     A    P    
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV 295

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 12/103 (11%), Positives = 22/103 (21%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++              +   +  QA    P      ++       L  + + L       
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            L P             +A+E     L     A    P     
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 12/102 (11%), Positives = 22/102 (21%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++   G          +   +  QA    P      ++       L  + + L       
Sbjct: 533 AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 592

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            L               +A+E     L     A    P    
Sbjct: 593 GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 14/103 (13%), Positives = 25/103 (24%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++   G          +   +  QA    P      ++       L  + + L      
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQA 354

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L P         G   +A+E     L     A    P    
Sbjct: 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 397

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 2e-11
 Identities = 12/98 (12%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P+     ++       L  + + L        L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A     +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVV 702

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 11/103 (10%), Positives = 23/103 (22%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++              +   +  QA    P      ++       L  + + L      
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L  +            +A+E     L     A    P    
Sbjct: 694 HGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 12/98 (12%), Positives = 20/98 (20%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A         
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 13/98 (13%), Positives = 21/98 (21%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA           ++       L  + + L        L P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A    P    
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 12/98 (12%), Positives = 20/98 (20%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA           ++       L  + + L        L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+E     L     A    P    
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 13/98 (13%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A    P    
Sbjct: 394 DQVVAIASNG-GKQALETVQRLLPVLCQAHGLTPDQVV 430

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 10/98 (10%), Positives = 19/98 (19%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  Q     P+     ++       L  + + L        L P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+      L     A    P    
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 12/98 (12%), Positives = 20/98 (20%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+E     L          P    
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 25/103 (24%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + +  +G        +    AL    +   P+     ++       L  + + L      
Sbjct: 159 VKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQA 218

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L P             +A+E     L     A    P    
Sbjct: 219 HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 13/95 (13%), Positives = 21/95 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                    G   +A+E     L     A    P 
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 13/90 (14%), Positives = 21/90 (23%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
               +   +  QA    P      ++       L  + + L     T  L P        
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                +A+E     L     A    P    
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVV 498

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 10/102 (9%), Positives = 19/102 (18%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P      ++       L  + + L        
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L P             +A+E     L                
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 12/86 (13%), Positives = 19/86 (22%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84
            A  L    ++ D       + R              A     ++L P            
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 85  LEAMEQYDDALSAFQTALQYNPQSAE 110
            +A+E     L     A    P    
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVV 227

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 13/121 (10%), Positives = 27/121 (22%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++   G          +   +  QA    P+     ++       L  + + L      
Sbjct: 736 VAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQD 795

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
             L               +A+E     L     A                  Q  +  +R
Sbjct: 796 HGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQR 855

Query: 128 A 128
            
Sbjct: 856 L 856

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 8/101 (7%), Positives = 18/101 (17%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  Q      +     ++       L  + + L        
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L               +A+E     L          P    
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G + +  G Y  A  L+ +A+K++P +P      A   L L  +N AL + +T ++  P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 73  QWEKGYFRKGCILEAME-----------QYDDALSAFQTALQYNPQSAE 110
           ++  GY        A+              + ALS  + A + NP+ A 
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 65.6 bits (161), Expect = 5e-13
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +   G   KA A   QA+  +   P + S  A  +L + +L++ALA     +   P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +      R    L    + ++A  A      ++ 
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           +   +     G   +A ++   A + +P    L   R   +  L + +KA A  +  ++L
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
               E        +  +M + D+AL+ +  AL+  P+  +
Sbjct: 148 EDTPE-IRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-----------KLNKAL 61
                 K G    A       + + P     +   + A++ L             L +AL
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +  +    +NP++   + ++G +   + + D A ++ + AL    
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 11/73 (15%), Positives = 22/73 (30%)

Query: 38  PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA 97
            +              L + + AL   E  +  NPQ  +  +        +   + AL  
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 98  FQTALQYNPQSAE 110
            +T +   P+   
Sbjct: 62  GKTLVARTPRYLG 74

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 15/99 (15%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    K  N  +AA  +    +++P     + +         K   A+        L+P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    +             + AL++ +  L   PQ  ++
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 37  DPSNPTLFS----NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92
           + +NP ++         + L L  L +A    E      P+ E+ +   G      E+  
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68

Query: 93  DALSAFQTALQYNPQSAEV 111
            A+ A   A   +P+   V
Sbjct: 69  LAIIALNHARMLDPKDIAV 87

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 13/97 (13%), Positives = 30/97 (30%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G    +     +A   + ++++ + + P++    A       +   A    +       Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             +       + +  E  D A S      +  P S E
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           G   ++   Y +A     +A +    P    +F N     L + K  +A    E ++ LN
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
                       +L    +Y  A   +    Q   Q+A       R++++ +D+  A   
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231

Query: 132 EN 133
             
Sbjct: 232 GL 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 9/87 (10%), Positives = 25/87 (28%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84
                  +  K        +      +L      +A       + ++P     +     +
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80

Query: 85  LEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   +   A   ++ AL  + ++A V
Sbjct: 81  FQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G  + + GN  +A     +A++ DPS+    +  A  F   ++   A  +    ++ + +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQ--YNPQSAE 110
             +     G  L   ++Y++A      A Q    P+ + 
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISL 70
           G  +    +Y  +   Y QA++    N  L++  A    +        +  A  +  ++L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130
           +                   Y  A+  +Q  +  N      ++ ++ ++  AK  +R  +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM-AKLLQRRSD 169

Query: 131 VEN 133
           +E+
Sbjct: 170 LEH 172

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 3/113 (2%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A  AE    +D  ++F    N           I+ +P N   ++     +L     + +L
Sbjct: 5   AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSL 64

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQY---DDALSAFQTALQYNPQSAEV 111
                 + L  +  + Y     +L             +    AL  +      
Sbjct: 65  LAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.0 bits (139), Expect = 1e-10
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 23/145 (15%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------------LFSNRAAAFL 52
                          AG Y +AAA   +A++   + P               +  A A  
Sbjct: 9   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68

Query: 53  HLVKLNKALADAETTISLNP-----------QWEKGYFRKGCILEAMEQYDDALSAFQTA 101
            L   ++AL  A+  +                W    + +   L+ + +  +A+  F+  
Sbjct: 69  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128

Query: 102 LQYNPQSAEVSRKIKRVSQLAKDKK 126
           ++   +    +   +R+ ++A D+ 
Sbjct: 129 VEMIEERKGETPGKERMMEVAIDRI 153

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 16/75 (21%), Positives = 33/75 (44%)

Query: 36  QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           +DP +P      A   L     ++ALA  E  +  +P +   Y+  G + E +++ DDA+
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 96  SAFQTALQYNPQSAE 110
             +   ++   +   
Sbjct: 62  DTYAQGIEVAREEGT 76

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 1/87 (1%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK-ALADAETTISLNPQWEKGYF 79
               K      + +            +  A       +  A       + L P+  + + 
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNP 106
           + G +         A + F  AL +  
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL--------HLVKLNKALADA 64
             +    + + + +      A++ D  +   +     A+L        +     +AL+  
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244

Query: 65  ETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                ++ +       +  +  + +  E Y +AL  F  A   +P   E
Sbjct: 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 21  GNYLKAAALYTQAIKQD---PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
               +A + Y QA K D    SNP L  NRA    +     +AL       +L+P W + 
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137
             R+  +LE + +    L +         QS   S +   +      + ++   + +   
Sbjct: 295 QQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLE 354

Query: 138 VDMVQHLDE 146
           +  +  L  
Sbjct: 355 LKPLSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS--------NRAAAFLHLVKLNKALADA 64
            G  ++K G+   A   ++ A+    +  +L +           +   H   +  ++  A
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 65  ETTISLNPQWEKGYFRKGCIL--------EAMEQYDDALSAFQTALQYNPQSA 109
           +  + ++    + ++  G           +  +    ALSA+  A + + +++
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 56  KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DALSAFQTALQYNPQSAEV 111
           ++ K L   E  +       +    KG  L     Y  +A      A++  P+  E 
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
             E+ +  +Y +A A    A+K DP N   +  RA  + +L   +KA       +S+ P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 74  WEKGYFRKGCIL-EAMEQYDDALSAFQTALQ--YNPQSAEV 111
             +     G  L   + +  ++++ F  AL     P     
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
           +     ++ A + +A+  DP+ PT      N+        +   A A  + +++  PQ+ 
Sbjct: 89  RLNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
             +           Q  DA   F+             
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105
             A  ++      +A A  E  +  +P+ E  +  +  I + ++  D A  +F+ AL   
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72

Query: 106 PQSAEV 111
           P SAE+
Sbjct: 73  PDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG    K G +  A A   +++   P  P  F   A   +   +L  A    +   S   
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             +      G   +  +   +A +A++   Q       
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPY 214

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLNPQW 74
                  +A   + +A+++ P NP   S  A A   L        A+      I LNP  
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

Query: 75  EKGYFRKGCILEAM----EQYDDALSAFQTALQYNPQSAEV 111
           +         L  M    E+  +     + AL+  P   +V
Sbjct: 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 19/120 (15%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------- 56
           L+     + +     KA  L  +A++  P+N  L       +   V              
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 57  ------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                 +  A+A  +     N    +       +    +QY++A   FQ           
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
               +   L  +A+++ P    +  + A  +    + +KA+   +  +   P     + +
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 81  KGCIL-------------------EAMEQYDDALSAFQTALQYNPQSAEV 111
            GC                     + +E    A++  + A + N     V
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 23  YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP---QWEKGYF 79
              A A   +A + + +   + S  A+      +  +A    +   S        +  + 
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375

Query: 80  RKGCILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
           R G      M+  D A+  F   ++ N +S E  +   ++ ++AK
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADA 64
                  G    A     +A +          +  +   + N A  + H+ +L+      
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 65  ETTISLNPQWEKG--------YFRKGCIL--EAMEQYDDALSAFQTALQYNPQSAEVSRK 114
           +    +  ++              +G         Q + A   F+ AL+  P++ E +  
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 115 IKRVSQLAKDKKRAQE 130
           +   S    +   +Q 
Sbjct: 178 LAIASYRLDNWPPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
           ++     KA   + + +K +  +               KL K    A+  +S N    + 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKS-------REKEKMKDKLQKI---AKMRLSKNGADSEA 432

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                 + E  E+   A    +  L+    
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSL 462

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 8  MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAET 66
          M       E    G+   A     + ++ +P      +     A+  L    KAL + ++
Sbjct: 1  MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 67 TISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           I LNP       RK  +++ +  Y+  +
Sbjct: 61 AIELNPDSPALQARKM-VMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104
                 ++   +  AL   E  +   P   ++ Y+  G     +  +  AL+ +Q+A++ 
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 105 NPQSAEV 111
           NP S  +
Sbjct: 65  NPDSPAL 71

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLN 71
                 +     +A  L   AI+ + +N T++  R      L K L++ +      I   
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           P+  + +  +  ++E +      L      L  + 
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 15/157 (9%), Positives = 49/157 (31%), Gaps = 10/157 (6%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +        +  +        + QD  N   + +R          +  L   +  +  + 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 73  QWEKGYFRKGCILEAMEQYDD------ALSAFQTALQYNPQSAEV---SRKIKRVSQLAK 123
           +    + ++  ++     Y+D       +      ++  P +       + I +   L+K
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291

Query: 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160
                 ++ +++ +     +L  F  ++ E     +C
Sbjct: 292 YPNLLNQLLDLQPSHSSP-YLIAFLVDIYEDMLENQC 327

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 9/80 (11%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 33  AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-Y 91
            I        ++    A      +  +A       I LN      +  +  +L+++++  
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 92  DDALSAFQTALQYNPQSAEV 111
            + ++     ++  P++ +V
Sbjct: 149 HEEMNYITAIIEEQPKNYQV 168

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.5 bits (117), Expect = 5e-08
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 37  DPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           DP N    + N   A+      ++A+   +  + L+P   + ++  G        YD+A+
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 96  SAFQTALQYNPQSAE 110
             +Q AL+ +P +AE
Sbjct: 64  EYYQKALELDPNNAE 78

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 73 QWEKGYFRKGCIL 85
             +     G   
Sbjct: 75 NNAEAKQNLGNAK 87

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 3/96 (3%)

Query: 21  GNYLKAAALYTQAIK---QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
           G   +A   Y +AI    Q       +    + F  L +  KA A     +   P  +  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
                 +L  + +Y+  +      +        +  
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G+ F   G Y KA A+    +KQ P++  L    A    +L +  + +      I+    
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 74  WEK-GYFRKGCILEAMEQYDDAL 95
            E    +++     A+  Y D L
Sbjct: 94  DETIQSYKQ-----AILFYADKL 111

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 24  LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83
           L         + +  +   ++  +A + L   K +++     T I L   W   Y   G 
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGK 318

Query: 84  ILEAMEQYDDALSAFQTALQYNP 106
           + E      +A  A+ TA    P
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRP 341

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 10/99 (10%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN----------KALADAETT 67
               +  +A+ L  + ++  P      + +A   +     +              D   T
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +         Y  K        + D++  A  T +    
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 17/117 (14%), Positives = 26/117 (22%), Gaps = 3/117 (2%)

Query: 17  FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQW 74
             K      A     +   QD          A   L     KL  A    +         
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199

Query: 75  EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLAKDKKRAQE 130
                 +     A  +++ A    Q AL  +    E     +     L K  +    
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 2/129 (1%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+  E+  L  + +E  + G + +A  +      +  S   +   +A   L   +   A 
Sbjct: 3   ASPDEQ--LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
               T                  L         L   +  L  NP + E++ ++      
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 122 AKDKKRAQE 130
               + A E
Sbjct: 121 VGRDEEALE 129

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNK 59
           EA  + L  +G    K+G+     + +  A++    +      ++S    A+ +L    K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 60  ALADAETTISLNPQWE------KGYFRKGCILEAMEQYDDALSAFQTALQ 103
           AL      ++L           K     G  L+ +  +D+A+   Q  L 
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKL 57
           +A    + L  +G    K+G+     + +  A++    +      ++S    A+ +L   
Sbjct: 2   SASC--LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 58  NKALA------DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
            KAL           TI       K     G  L+ +  +D+A+   Q  L 
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.88
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.88
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.87
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.85
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.82
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.79
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.78
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.76
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.76
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.76
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.75
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.75
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.75
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.74
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.73
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.72
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.7
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.68
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.67
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.67
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.56
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.55
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.55
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.52
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.51
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.5
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.44
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.41
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.37
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.3
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.29
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.22
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.15
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.11
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.03
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.01
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.01
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.0
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.0
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.88
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.74
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.59
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.48
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.41
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.24
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.1
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.52
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.25
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.12
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.04
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.76
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.64
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.62
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.08
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.16
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.02
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.85
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.13
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.31
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.44
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.36
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.26
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.52
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.3
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	85.22
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.28
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	82.0
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	81.89
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	81.56
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	80.59

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=3e-26  Score=177.54  Aligned_cols=171  Identities=19%  Similarity=0.273  Sum_probs=150.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhh
Q 024419           84 ILEAM-----------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS  152 (268)
Q Consensus        84 ~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (268)
                      ++...           |++++|+..|+++++++|+++.++..+|.++...|++++|+.....  .+.           +.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~--al~-----------~~  148 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ--ALA-----------LE  148 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--HHH-----------HC
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH--HHh-----------cc
Confidence            99999           9999999999999999999999999999999999999999766321  111           11


Q ss_pred             hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                       .........+.++...+++++|+..|++++.++|.
T Consensus       149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence             22233456666777788888999988888888876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=2.6e-26  Score=192.53  Aligned_cols=128  Identities=18%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++.++..+|.++...|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  143 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN  143 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44555555666666666666666666666666666665566666666666666666666666666666666556666666


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++...|++++|+..|+++++.+|++..++..+|.++...|++++|...
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  191 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH  191 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666666666666666666666666665555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=4e-26  Score=190.79  Aligned_cols=230  Identities=10%  Similarity=-0.036  Sum_probs=186.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.++.++..+|.++...|++++|+..|++++.++|++..+|+++|.++..+|+ +++|+.+|++++.++|+++.+|+.+
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            688899999999999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++..+|++++|+..|+++++++|++..+|..+|.++..+|++++|+...  ...+.           +.+.....+..
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~--~~al~-----------l~P~~~~a~~~  239 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLK-----------EDVRNNSVWNQ  239 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHH-----------HCTTCHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH--HHHHH-----------hCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999986653  11122           22223334444


Q ss_pred             HHHHHHH-HHHHHHH-----HHhhhhhhhchhH---H-------HHHhh--hhhhhHhhhhHHhcCCccccCc-cchhHH
Q 024419          162 KHVFSFV-VETMETA-----VKSWHETSKVDAK---V-------YFLLD--KEKTDTEKYAPIVNVDKAFESP-HTHGSC  222 (268)
Q Consensus       162 ~~~~~~~-~~~~~~A-----~~~~~~~~~~~~~---~-------~~~~~--~~~~a~~~~~~~~~~~~~~~~~-~~~~~~  222 (268)
                      ++.+... .+..++|     +..|.+++.++|.   +       +...|  +..++++.+..+ ..+|..... ...+.+
T Consensus       240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~  318 (382)
T 2h6f_A          240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI  318 (382)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence            5554444 3333455     6889999999997   2       22334  578888888887 666654211 226667


Q ss_pred             HHHHH---------HH--HHHHHHHH-hhhhCCCCcc
Q 024419          223 FQFLR---------QY--ADDSFSSA-ACLVAPKSII  247 (268)
Q Consensus       223 ~~~~~---------~~--a~~~~~ka-~~~~~p~~~~  247 (268)
                      +..++         .+  |.+.|+++ + ++||....
T Consensus       319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~  354 (382)
T 2h6f_A          319 YEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKE  354 (382)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHH
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHH
Confidence            76663         24  99999999 9 99998653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=9.5e-27  Score=193.54  Aligned_cols=241  Identities=14%  Similarity=0.133  Sum_probs=193.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhh
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI----------KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK  154 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (268)
                      +...|++++|+..|+++++++|++..++..+          +.++...|++++|.....  ..+.           ..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~-----------~~p~  209 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL--EAAH-----------QNGD  209 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH--HHHH-----------HSCS
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH--HHHH-----------hCcC
Confidence            9999999999999999999999877666555          888888999999976632  1111           1112


Q ss_pred             --cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhH
Q 024419          155 --YGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGS  221 (268)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  221 (268)
                        ....+...+.++...+++++|+..|++++.++|.          ++...|++++|+..|++++.++|..... ...|.
T Consensus       210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence              2234456677788899999999999999999886          5778899999999999999998875322 22777


Q ss_pred             HHHHHHHH--HHHHHHHHhhhhCCCCccc--------ccccccccccc
Q 024419          222 CFQFLRQY--ADDSFSSAACLVAPKSIIS--------YPQVYKPICLE  259 (268)
Q Consensus       222 ~~~~~~~~--a~~~~~ka~~~~~p~~~~~--------~~~~~~~~~~~  259 (268)
                      ++...|++  |...|++++ .++|++...        ...+|...+..
T Consensus       290 ~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  336 (365)
T 4eqf_A          290 SCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIA  336 (365)
T ss_dssp             HHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHH
Confidence            88888877  999999999 999885432        34566655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=6.4e-26  Score=190.14  Aligned_cols=246  Identities=15%  Similarity=0.149  Sum_probs=166.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++..+|+++.++..+|
T Consensus        97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  176 (388)
T 1w3b_A           97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG  176 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            36666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-----HHHh--------------hh
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-----VDMV--------------QH  143 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--------------~~  143 (268)
                      .++...|++++|+..|+++++++|++..++..+|.++...+++++|.........     ....              ..
T Consensus       177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  256 (388)
T 1w3b_A          177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence            7777777777777777777777777777777777777777666666543211000     0000              00


Q ss_pred             HHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          144 LDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                      +..+...  ..+.....+...+......+++++|+..|++++.+.|.          ++...|++++|+..+++++.+.|
T Consensus       257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  336 (388)
T 1w3b_A          257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP  336 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            0011111  11222233445556667788888899999888888775          45677888899999999988877


Q ss_pred             cccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          212 AFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       212 ~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      ...... ..+.++...|++  |...|++++ +++|++..++
T Consensus       337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~a~  376 (388)
T 1w3b_A          337 EFAAAHSNLASVLQQQGKLQEALMHYKEAI-RISPTFADAY  376 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH-TTCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHH
Confidence            642222 255666666666  899999999 8998865433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.93  E-value=4.3e-25  Score=183.32  Aligned_cols=244  Identities=14%  Similarity=0.124  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSR----------------KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ..|++++|+..|++++..+|++...+.                .++.++ ..|++++|.....  ..+.           
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~--~a~~-----------  209 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL--AAVR-----------  209 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH--HHHH-----------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH--HHHH-----------
Confidence            999999999999999999999887765                456666 8888888876632  1111           


Q ss_pred             hhhh--cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-c
Q 024419          151 MSEK--YGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-H  217 (268)
Q Consensus       151 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~  217 (268)
                      ..+.  ........+.++...+++++|+..+.+++.++|.          ++...|++++|+..|++++.++|..... .
T Consensus       210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (368)
T 1fch_A          210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  289 (368)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            1122  2233455666777889999999999999998886          5678899999999999999998765322 2


Q ss_pred             chhHHHHHHHHH--HHHHHHHHhhhhCCCCcc-------cccccccccccccchhhc
Q 024419          218 THGSCFQFLRQY--ADDSFSSAACLVAPKSII-------SYPQVYKPICLERSRITK  265 (268)
Q Consensus       218 ~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  265 (268)
                      ..|.++...+++  |...|++++ .+.|++..       ....+|...|..-..+++
T Consensus       290 ~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          290 NLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            277788888888  999999999 99998722       224566666555444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=7.3e-25  Score=180.70  Aligned_cols=240  Identities=18%  Similarity=0.240  Sum_probs=172.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|+++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHHHHHHHhHHHHhhhhh-----HHHhh---
Q 024419           86 EAMEQYDDALSAFQTALQYNP---QSAEVSRKI------------KRVSQLAKDKKRAQEVENIRSN-----VDMVQ---  142 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-----~~~~~---  142 (268)
                      ...|++++|+..|+++++.+|   +++.++..+            +.++...|++++|.........     .....   
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   899988888            5677777777777655321100     00000   


Q ss_pred             -----------hHHHHHHHh--hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------------
Q 024419          143 -----------HLDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------------  188 (268)
Q Consensus       143 -----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------  188 (268)
                                 .+..+...+  .+.........+.++...+++++|+..+++++...|.                     
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence                       000000001  1111222334444555566666666666666666554                     


Q ss_pred             -HHHHhhhhhhhHhhhhHHhcCCccccCc-----cchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          189 -VYFLLDKEKTDTEKYAPIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       189 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                       .+...|++++|+..+++++...|.....     ...+.++...+++  |...|++++ .++|++.
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~  306 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNV  306 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccH
Confidence             1344566777777777777665543110     0134455555555  777777777 7777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.93  E-value=2.8e-24  Score=152.04  Aligned_cols=117  Identities=38%  Similarity=0.643  Sum_probs=114.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..++++.++|..++..|+|++|+..|+++++.+|.++.+|.++|.|+..+|++++|+..|+++++++|+++.+|+.+|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .++..+|++++|+..|+++++++|+++.++..++.++
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999988764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=178.03  Aligned_cols=244  Identities=13%  Similarity=0.083  Sum_probs=163.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            34556677777788888888888888888888888777777777777778888888888888888888877777888888


Q ss_pred             HHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHh--------------hh
Q 024419           84 ILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMV--------------QH  143 (268)
Q Consensus        84 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~--------------~~  143 (268)
                      ++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|..........     ...              ..
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence            887777 7778888888888888877777778888777777777776543211000     000              00


Q ss_pred             HHHHHHHh--hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---------hH----------HHHHhhhhhhhHhh
Q 024419          144 LDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AK----------VYFLLDKEKTDTEK  202 (268)
Q Consensus       144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~----------~~~~~~~~~~a~~~  202 (268)
                      ...+...+  .+.........+.++...+++++|+..+++++.+.         |.          ++...|++++|+..
T Consensus       179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            00011111  11122233444555666777788888887777665         21          45667788888888


Q ss_pred             hhHHhcCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419          203 YAPIVNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       203 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~  248 (268)
                      +++++.++|...... ..+.++...+++  |.+.|++++ .++|++..+
T Consensus       259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~  306 (330)
T 3hym_B          259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFS  306 (330)
T ss_dssp             HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHH
T ss_pred             HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHH
Confidence            888888766542222 266677777766  888888888 888877543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=176.95  Aligned_cols=217  Identities=9%  Similarity=0.043  Sum_probs=151.4

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        30 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      ....+...|.++.++..+|.+++..|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   90 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP   90 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence            44556677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHhHHHHhhhhh-----HHHhh--------------hHHHHHH--HhhhhcCchhhhHHHHHH
Q 024419          110 EVSRKIKRVSQLAK-DKKRAQEVENIRSN-----VDMVQ--------------HLDEFKS--EMSEKYGAEECWKHVFSF  167 (268)
Q Consensus       110 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-----~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~  167 (268)
                      .++..+|.++...| ++++|.........     .....              .+..+..  ...+.........+..+.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999 89988765321110     00000              0001111  111222333444555566


Q ss_pred             HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcccc----------CccchhHHHHHHH
Q 024419          168 VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFE----------SPHTHGSCFQFLR  227 (268)
Q Consensus       168 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  227 (268)
                      ..+++++|+..+++++...|.          ++...|++++|...+++++.+.+...          .....+.++...+
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            677777777777777777665          45567777788888877777642210          1112455556666


Q ss_pred             HH--HHHHHHHHhhhhCCCCcc
Q 024419          228 QY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       228 ~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ++  |...|++++ .++|++..
T Consensus       251 ~~~~A~~~~~~a~-~~~~~~~~  271 (330)
T 3hym_B          251 KYAEALDYHRQAL-VLIPQNAS  271 (330)
T ss_dssp             CHHHHHHHHHHHH-HHSTTCSH
T ss_pred             CHHHHHHHHHHHH-hhCccchH
Confidence            66  888888888 88887644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=3.1e-24  Score=182.90  Aligned_cols=130  Identities=23%  Similarity=0.325  Sum_probs=119.5

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHH------------HHHHHHHHHHHhHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIK------------RVSQLAKDKKRAQEV  131 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~------------~~~~~~~~~~~a~~~  131 (268)
                      |.++...|++++|+..|+++++.+|++.   .++..++            .++...|++++|...
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999998   8877764            446667777777654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=1e-23  Score=158.67  Aligned_cols=171  Identities=16%  Similarity=0.188  Sum_probs=153.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+.+++..+|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      +...++++.|+..+.+++.++|++..++..+|.++...|++++|+....  ..+           .+.+.....+...|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~~l-----------~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE--KTI-----------SIKPGFIRAYQSIGL  149 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH--HHH-----------HhcchhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999976631  111           122333445666777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhH
Q 024419          165 FSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       165 ~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .+..++++++|+..|+++++++|+
T Consensus       150 ~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCcc
Confidence            788889999999999999998887

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=1.1e-24  Score=173.46  Aligned_cols=229  Identities=15%  Similarity=0.116  Sum_probs=181.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRK   81 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l   81 (268)
                      +++.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999999999999999999 4443    4569999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|.......  +...+           .....+..
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~~-----------~~~~~~~~  147 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ--IRPTT-----------TDPKVFYE  147 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG--CCSSC-----------CCHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH--hhcCC-----------CcHHHHHH
Confidence            999999999999999999999999999999999999999999999997764211  11111           11122333


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhh---hhhhHhhhhHHhcCC---cccc------Cccch
Q 024419          162 KHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDK---EKTDTEKYAPIVNVD---KAFE------SPHTH  219 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~---~~~a~~~~~~~~~~~---~~~~------~~~~~  219 (268)
                      .+...+..+++++|+..|++++.++|.          ++..+++   .++|+..|++++.+.   |...      .....
T Consensus       148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  227 (272)
T 3u4t_A          148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI  227 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            442233345899999999999999886          3556677   778999999999884   3210      11115


Q ss_pred             hHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          220 GSCFQFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       220 ~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      |.++...+++  |.+.|++++ +++|+|..+.
T Consensus       228 ~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~  258 (272)
T 3u4t_A          228 AYYYTINRDKVKADAAWKNIL-ALDPTNKKAI  258 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-hcCccHHHHH
Confidence            5566666666  999999999 9999986433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=1.3e-23  Score=173.12  Aligned_cols=243  Identities=12%  Similarity=0.065  Sum_probs=145.1

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP---QWEKGYFR   80 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~   80 (268)
                      |.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|   ++..++..
T Consensus        34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            445556666666666666666666666666666666666666666666666666666666666666665   55544444


Q ss_pred             H------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-----hHHHhhh
Q 024419           81 K------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-----NVDMVQH  143 (268)
Q Consensus        81 l------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~  143 (268)
                      +            |.++...|++++|+..++++++.+|+++.++..++.++...|++++|........     .......
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  193 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK  193 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4            4555555555555555555555555555555555555555555555543321100     0000000


Q ss_pred             H--------------HHHHHHhhhhcCch--------------hhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------
Q 024419          144 L--------------DEFKSEMSEKYGAE--------------ECWKHVFSFVVETMETAVKSWHETSKVDAK-------  188 (268)
Q Consensus       144 ~--------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------  188 (268)
                      +              ..+...+.......              ....+......+++++|+..+.+++...|.       
T Consensus       194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  273 (359)
T 3ieg_A          194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR  273 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence            0              00000000000000              112244566788999999999998887765       


Q ss_pred             -------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          189 -------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       189 -------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                             ++...|++++|+..++.++.++|..... ...|.++...|++  |...|++++ +++|++..
T Consensus       274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~  341 (359)
T 3ieg_A          274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ-EHNENDQQ  341 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCChH
Confidence                   4667899999999999999998765322 2277788888888  999999999 99999854

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.1e-24  Score=166.77  Aligned_cols=221  Identities=15%  Similarity=0.188  Sum_probs=182.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------H
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------E   75 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~   75 (268)
                      .+..++.+..+|..++..|++++|+..|+++++.+ .++.++..+|.++..+|++++|+..+++++.++|++       +
T Consensus         1 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A            1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence            36789999999999999999999999999999999 999999999999999999999999999999999877       7


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY  155 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (268)
                      .++..+|.++...|++++|+..|+++++++|+        +.++...+++++|.....  ..+..           .+..
T Consensus        80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~--~~~~~-----------~~~~  138 (258)
T 3uq3_A           80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAE--AEAYV-----------NPEK  138 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHH--HHHHC-----------CHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHH--HHHHc-----------Ccch
Confidence            99999999999999999999999999999997        344555666666654421  11111           1112


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHH
Q 024419          156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQ  224 (268)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~  224 (268)
                      ...+...+......+++++|+..+++++..+|.          ++...|++++|+..++.++.++|...... ..+.++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            234455666777789999999999999988886          57788999999999999999988653222 2677777


Q ss_pred             HHHHH--HHHHHHHHhhhhC------CCCc
Q 024419          225 FLRQY--ADDSFSSAACLVA------PKSI  246 (268)
Q Consensus       225 ~~~~~--a~~~~~ka~~~~~------p~~~  246 (268)
                      ..+++  |...|++++ +++      |++.
T Consensus       219 ~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~  247 (258)
T 3uq3_A          219 AVKEYASALETLDAAR-TKDAEVNNGSSAR  247 (258)
T ss_dssp             HTTCHHHHHHHHHHHH-HHHHHHHTTTTHH
T ss_pred             HHhhHHHHHHHHHHHH-HhChhhcCCCchH
Confidence            77877  999999999 999      7664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.92  E-value=5.1e-23  Score=158.24  Aligned_cols=171  Identities=12%  Similarity=0.059  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH----------------HHHHHHHcCChHHHHHHHHHHHh
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN----------------RAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.+++.                +|.++..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        70 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...+..+.+.............+       
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-------  155 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-------  155 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-------
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-------
Confidence            9999999999999999999999999999999999999999999999999877765443322211111111000       


Q ss_pred             HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                           ........|......+++++|+..|++++.++|.
T Consensus       156 -----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          156 -----MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             -----HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             -----hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                 0012234555666678888888888888888886

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.92  E-value=6.6e-24  Score=190.19  Aligned_cols=174  Identities=20%  Similarity=0.244  Sum_probs=154.6

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      +.|.+++++.++|.++..+|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++..+|++++|++.|+++++++|++..++..+|.++..+|++++|+....  +.+           .+.+.....+..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~--~Al-----------~l~P~~~~a~~~  150 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR--TAL-----------KLKPDFPDAYCN  150 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH-----------HhCCCChHHHhh
Confidence            9999999999999999999999999999999999999999999999976631  111           223334445566


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          162 KHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .+..+..++++++|.+.+++++.+.|+
T Consensus       151 L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          151 LAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            667777788888888888888887776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=4.2e-23  Score=160.62  Aligned_cols=130  Identities=19%  Similarity=0.208  Sum_probs=123.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ++.++..++.+|..++..|++++|+..|+++++.+| .+..+++++|.|+..+|++++|+..|++++..+|+++.++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            456679999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHhHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSA-------EVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      |.++..+|++++|+..|+++++++|+++       .++..+|.++...|++++|+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  140 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY  140 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence            9999999999999999999999999999       66999999999999999997764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.91  E-value=6.3e-24  Score=173.16  Aligned_cols=227  Identities=10%  Similarity=0.104  Sum_probs=187.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI--------------KR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      +...|++++|+..++++++.+|.+...+..+              +. ++...|++++|.....  ..+.          
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~----------  166 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH--AALE----------  166 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH--HHHH----------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH--HHHh----------
Confidence            9999999999999999999999998888777              65 5777888888866531  1111          


Q ss_pred             HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC-ccc
Q 024419          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES-PHT  218 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~  218 (268)
                       ..+.........+..+...+++++|+..+.+++..+|.          ++...|++++|+..+++++...|.... ...
T Consensus       167 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  245 (327)
T 3cv0_A          167 -MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN  245 (327)
T ss_dssp             -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence             11222334455566677789999999999999988875          566889999999999999999876422 222


Q ss_pred             hhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          219 HGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       219 ~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      .+.++...+++  |.+.|++++ .++|++
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~-~~~~~~  273 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAI-YMQVGG  273 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHHTTS
T ss_pred             HHHHHHHhccHHHHHHHHHHHH-HhCCcc
Confidence            67777777777  999999999 999983

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=4.3e-23  Score=175.81  Aligned_cols=243  Identities=12%  Similarity=0.073  Sum_probs=177.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~   79 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|++++..+|++.   .++.
T Consensus        56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  135 (450)
T 2y4t_A           56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS  135 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999999999999999988   7766


Q ss_pred             HH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-----HHHhh
Q 024419           80 RK------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-----VDMVQ  142 (268)
Q Consensus        80 ~l------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~  142 (268)
                      .+            |.++...|++++|+..|+++++.+|.++.++..++.++...|++++|.........     .....
T Consensus       136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  215 (450)
T 2y4t_A          136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY  215 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            55            66699999999999999999999999999999999999999999888765321110     00000


Q ss_pred             h--------------HHHHHHHhhhhcCch--hhhH------------HHHHHHHHHHHHHHHhhhhhhhchhH------
Q 024419          143 H--------------LDEFKSEMSEKYGAE--ECWK------------HVFSFVVETMETAVKSWHETSKVDAK------  188 (268)
Q Consensus       143 ~--------------~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~A~~~~~~~~~~~~~------  188 (268)
                      .              +..+...+.......  ....            +......+++++|+..|.+++.+.|.      
T Consensus       216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  295 (450)
T 2y4t_A          216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV  295 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH
Confidence            0              001111111111111  1111            34455567777777777777766654      


Q ss_pred             --------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          189 --------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       189 --------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                              ++...|++++|+..+++++.++|..... ...+.++...+++  |...|++++ +++|++.
T Consensus       296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~  363 (450)
T 2y4t_A          296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ-EHNENDQ  363 (450)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCcchH
Confidence                    3445677777888887777776654211 2256666666666  888888888 7888764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=2.3e-22  Score=174.95  Aligned_cols=227  Identities=15%  Similarity=0.167  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +.++..+|..+...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            557889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (268)
                      ..|++++|+..|+++++.+|+++.++..++.++...|++++|.....  ..+           ...+.....+...+.+.
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~-----------~~~~~~~~~~~~l~~~~  388 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN--ETK-----------LKFPTLPEVPTFFAEIL  388 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCTHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH-----------HhCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999977632  111           12233344556667778


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH----------------HHHHh----------hhhhhhHhhhhHHhcCCccccCcc-ch
Q 024419          167 FVVETMETAVKSWHETSKVDAK----------------VYFLL----------DKEKTDTEKYAPIVNVDKAFESPH-TH  219 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~-~~  219 (268)
                      ...+++++|+..|.+++.+.|.                ++...          |++++|+..+++++.++|...... ..
T Consensus       389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  468 (537)
T 3fp2_A          389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL  468 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            8889999999999999998886                24445          999999999999999988653222 26


Q ss_pred             hHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419          220 GSCFQFLRQY--ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       220 ~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~  248 (268)
                      +.++...|++  |.+.|++++ .++|++...
T Consensus       469 ~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~  498 (537)
T 3fp2_A          469 AQLKLQMEKIDEAIELFEDSA-ILARTMDEK  498 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-HHC--CHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHH-HhCCCcHHH
Confidence            7777888877  999999999 999987554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=8.4e-23  Score=169.68  Aligned_cols=198  Identities=11%  Similarity=0.065  Sum_probs=166.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK-   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-   81 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.++|++..++..+ 
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            4778899999999999999999999999999999999999999999999999999999999999999999876666555 


Q ss_pred             ---------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           82 ---------GCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        82 ---------a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                               |.++...|++++|+..|+++++++|+  ++.++..+|.++...|++++|.....  ..+.           
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~-----------  241 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN--AALT-----------  241 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------
Confidence                     99999999999999999999999999  89999999999999999999977632  1111           


Q ss_pred             hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      ..+.....+...+..+...+++++|+..|++++.++|.          ++..+|++.+|+..|++++.+.|..
T Consensus       242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            12223334566677788889999999999999999886          5778899999999999999997764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=2.4e-22  Score=155.50  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=134.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhC
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-----------VKLNKALADAETTISLN   71 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~   71 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+           |++++|+..|+++++++
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            5888999999999999999999999999999999999999999999999999           99999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHh
Q 024419           72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM  151 (268)
Q Consensus        72 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  151 (268)
                      |+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|.....  ..+.           +
T Consensus       115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~-----------~  180 (217)
T 2pl2_A          115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA--KALE-----------Q  180 (217)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------H
T ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------h
Confidence            9999999999999999999999999999999999 999999999999999999999976531  1111           2


Q ss_pred             hhhcCchhhhHHHHHHHHHHHHHHHHhhhhh
Q 024419          152 SEKYGAEECWKHVFSFVVETMETAVKSWHET  182 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  182 (268)
                      .+.........+.+....+++++|+..++++
T Consensus       181 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          181 APKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             STTCHHHHHHHHHHHTC--------------
T ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            2233334455556666678888888877765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=8.3e-23  Score=170.74  Aligned_cols=199  Identities=10%  Similarity=0.044  Sum_probs=158.0

Q ss_pred             chHhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.++.+++.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|++..+|+.+
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l  206 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  206 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence            58899999999999999997 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHhHH---HHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQE---VENIRSNVDMVQHLDEFKSEMSEKYGA  157 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
                      |.++..+|++++|+.+|+++++++|++..+|..+|.++.. .+..++|..   +..+...+...+           ....
T Consensus       207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----------~~~~  275 (382)
T 2h6f_A          207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----------HNES  275 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----------TCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----------CCHH
Confidence            9999999999999999999999999999999999999988 444355531   111122222222           2222


Q ss_pred             hhhhHHHHHHHHH--HHHHHHHhhhhhhhchhH----------HHHHhh--------h-hhhhHhhhhHH-hcCCccc
Q 024419          158 EECWKHVFSFVVE--TMETAVKSWHETSKVDAK----------VYFLLD--------K-EKTDTEKYAPI-VNVDKAF  213 (268)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~----------~~~~~~--------~-~~~a~~~~~~~-~~~~~~~  213 (268)
                      .+..++.+....+  ++++|+..+.+. +.+|.          +|..+|        + .++|+..|+++ +.++|..
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r  352 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR  352 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence            3333333333333  567777777766 56654          344443        2 48899999999 8998854

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=5.3e-21  Score=152.21  Aligned_cols=210  Identities=15%  Similarity=0.117  Sum_probs=151.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|.++.++..+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .++...|++++|+..|+++++++|++......++.. ...|++++|.....  ..+...+           .. ......
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~--~~~~~~~-----------~~-~~~~~~  183 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK--QHFEKSD-----------KE-QWGWNI  183 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH--HHHHHSC-----------CC-STHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH--HHHhcCC-----------cc-hHHHHH
Confidence            999999999999999999999999988766655544 45577777765531  0111000           00 011112


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHH
Q 024419          163 HVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQ  228 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (268)
                      .......+..++|+..+.+++...|.              ++...|++++|...|++++.++|..  ....+.++..+++
T Consensus       184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~  261 (275)
T 1xnf_A          184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSL  261 (275)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHH
Confidence            22222334445666677666665552              4556677777777777777777643  1223444454444


Q ss_pred             H
Q 024419          229 Y  229 (268)
Q Consensus       229 ~  229 (268)
                      +
T Consensus       262 ~  262 (275)
T 1xnf_A          262 L  262 (275)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=1.1e-22  Score=177.06  Aligned_cols=103  Identities=28%  Similarity=0.513  Sum_probs=92.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+..++.+|..++..|++++|+..|++++..+|+++.++..+|.|+..+|++++|+..|++++.++|+++.+++.+|.+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  102 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCC
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      +...|++++|+..|+ ++..+|+.
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999988774 66555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=3.9e-22  Score=175.82  Aligned_cols=245  Identities=13%  Similarity=0.110  Sum_probs=165.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            56788889999999999999999999999998888888888888888888888888888888888888888888888888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHhh--------------hH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMVQ--------------HL  144 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--------------~~  144 (268)
                      +|...|++++|+..|+++++++|++..+|..++.++...|++++|.+........     ....              ..
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888888888888888888888888888888888888776653211000     0000              00


Q ss_pred             HHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch------hH-----------HHHHhhhhhhhHhhhhH
Q 024419          145 DEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD------AK-----------VYFLLDKEKTDTEKYAP  205 (268)
Q Consensus       145 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~-----------~~~~~~~~~~a~~~~~~  205 (268)
                      ..+...  ..+.....+...+..+...+++++|+..|++++...      |.           ++...|++++|...+++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            000000  011111223333444555667777777777776652      21           35566777777777777


Q ss_pred             HhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          206 IVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       206 ~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      ++.++|.... ....+.++...|++  |.+.|++++ +++|++..++
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~  587 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMAS  587 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCChHHH
Confidence            7777664321 12255566666666  777777777 7777765433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-22  Score=175.06  Aligned_cols=231  Identities=13%  Similarity=0.064  Sum_probs=199.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  312 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence            778899999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ++...|++++|+..|+++++.+|+++.++..++.++...|++++|......  .+           ...+.........+
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~-----------~~~~~~~~~~~~la  379 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE--AK-----------RKFPEAPEVPNFFA  379 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH--HH-----------HHSTTCSHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH--HH-----------HHcccCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999766321  11           12233444556667


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH---hhhhhhhHhhhhHHhcCCccccCc-cchhHHH
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK----------------VYFL---LDKEKTDTEKYAPIVNVDKAFESP-HTHGSCF  223 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~  223 (268)
                      ..+...+++++|+..+.+++.+.|.                ++..   .|++++|+..+++++.++|..... ...+.++
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  459 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK  459 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            7788889999999999999887775                3456   899999999999999998765322 2267777


Q ss_pred             HHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          224 QFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       224 ~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      ...|++  |...|++++ .++|++...+
T Consensus       460 ~~~g~~~~A~~~~~~a~-~~~~~~~~~~  486 (514)
T 2gw1_A          460 LQQEDIDEAITLFEESA-DLARTMEEKL  486 (514)
T ss_dssp             HHTTCHHHHHHHHHHHH-HHCSSHHHHH
T ss_pred             HHhcCHHHHHHHHHHHH-HhccccHHHH
Confidence            777877  999999999 9999975543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=8.9e-22  Score=173.56  Aligned_cols=239  Identities=10%  Similarity=0.021  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+..++..+...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|++++..+|++..++..++.++...
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  352 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES  352 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence            3444577888899999999999999988 789999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-----hHHHhhh--------------HHHHHH
Q 024419           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-----NVDMVQH--------------LDEFKS  149 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~--------------~~~~~~  149 (268)
                      |++++|+..+++++..+|++..++..++.++...|++++|........     .......              +..+..
T Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  432 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT  432 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987643211     1111000              011111


Q ss_pred             --HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCC------c
Q 024419          150 --EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVD------K  211 (268)
Q Consensus       150 --~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~------~  211 (268)
                        ...+.....+...+..+...+++++|+..|++++...|.          ++...|+.++|++.+++++.+.      |
T Consensus       433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p  512 (597)
T 2xpi_A          433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE  512 (597)
T ss_dssp             HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence              111122333444555666688888888888888877664          4667788889999998888873      3


Q ss_pred             cc--cCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          212 AF--ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       212 ~~--~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      ..  ......+.++...|++  |.+.|++++ +++|++...+
T Consensus       513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~  553 (597)
T 2xpi_A          513 KPWAATWANLGHAYRKLKMYDAAIDALNQGL-LLSTNDANVH  553 (597)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCChHHH
Confidence            21  1112255566666666  999999999 8888875433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.7e-22  Score=170.89  Aligned_cols=238  Identities=18%  Similarity=0.280  Sum_probs=173.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      ...+++++.+|..++..|+|++|+..|++++..+| ++.++..+|.|+...|++++|+..++++++.+|+++.+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35788999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCC-------------------------------------------------------
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQS-------------------------------------------------------  108 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~-------------------------------------------------------  108 (268)
                      ++...|++++|+..|++++..+|.+                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999999998754                                                       


Q ss_pred             ------------------------HHHHHHHHHHHHH---HHHHHHhHHHHhhhhh-----HHHhhhHHHHHHHhhhhcC
Q 024419          109 ------------------------AEVSRKIKRVSQL---AKDKKRAQEVENIRSN-----VDMVQHLDEFKSEMSEKYG  156 (268)
Q Consensus       109 ------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  156 (268)
                                              ..++..++.+...   .|++++|.........     +...+...    .......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  237 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE----KLKEKLA  237 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH----HHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc----ccChHHH
Confidence                                    3444444444443   5666666554211110     00000000    0001222


Q ss_pred             chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHH
Q 024419          157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFL  226 (268)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~  226 (268)
                      ..+...+......+++++|+..+++++...|.         ++...|++.+|+..+++++..+|...... ..+.++...
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence            33444555666677888888888887776663         45566788888888888888766542222 155555555


Q ss_pred             HHH--HHHHHHHHhhhhCCCCcc
Q 024419          227 RQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       227 ~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      +++  |...|++++ .++|++..
T Consensus       318 ~~~~~A~~~~~~~~-~~~~~~~~  339 (514)
T 2gw1_A          318 QNYDQAGKDFDKAK-ELDPENIF  339 (514)
T ss_dssp             TCTTHHHHHHHHHH-HTCSSCSH
T ss_pred             CCHHHHHHHHHHHH-HhChhhHH
Confidence            656  888888888 88877644

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=5.9e-22  Score=170.61  Aligned_cols=172  Identities=12%  Similarity=0.114  Sum_probs=149.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.++..++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.+|..+|++++|+.+|+++++++|+ ..++..+
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            456788999999999999999 99999999999999999999999999999999999999999999999999 7999999


Q ss_pred             HHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHhHHHHhhhhhHHHhhhH
Q 024419           82 GCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA--------KDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus        82 a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                      |.++...         |++++|+..|+++++++|+++.+|..+|.++...        +++++|.....  ..+.     
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~--~al~-----  249 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA--QAEK-----  249 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHHH-----
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH--HHHH-----
Confidence            9999999         9999999999999999999999999999999998        88888866531  1111     


Q ss_pred             HHHHHHhhh---hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          145 DEFKSEMSE---KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       145 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                            +.+   .....+...+.++...+++++|+..|++++.++|.
T Consensus       250 ------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          250 ------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             ------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                  122   33444566667777788888888888888888876

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=2.2e-22  Score=166.93  Aligned_cols=222  Identities=12%  Similarity=0.079  Sum_probs=182.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH---
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF---   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---   79 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++.   
T Consensus        94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  173 (368)
T 1fch_A           94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  173 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999877765   


Q ss_pred             -------------HHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419           80 -------------RKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus        80 -------------~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                                   .+|.++ ..|++++|+..|+++++.+|+  ++.++..+|.++...|++++|.....  ..+.     
T Consensus       174 ~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~-----  245 (368)
T 1fch_A          174 EGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT--AALS-----  245 (368)
T ss_dssp             ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----
T ss_pred             HHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----
Confidence                         567776 999999999999999999999  89999999999999999999977632  1111     


Q ss_pred             HHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419          145 DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFE  214 (268)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~  214 (268)
                            +.+.....+...+.++...+++++|+..|++++.++|.          ++...|++++|...+++++.+.|...
T Consensus       246 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          246 ------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             ------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             ------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence                  12222334566677788889999999999999998886          57788999999999999999877541


Q ss_pred             ------------CccchhHHHHHHHHH--HHHHHHHHh
Q 024419          215 ------------SPHTHGSCFQFLRQY--ADDSFSSAA  238 (268)
Q Consensus       215 ------------~~~~~~~~~~~~~~~--a~~~~~ka~  238 (268)
                                  .....+.++..+|++  |...+.+++
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                        111144555555544  555555555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=4.7e-21  Score=147.75  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=142.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419           83 CILEAM-EQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (268)
Q Consensus        83 ~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (268)
                      .++... |++++|+..++++++  .+|.+..++..+|.++...|++++|.....  ..+.           ..+......
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~  150 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLA-----------AQPQFPPAF  150 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HSTTCHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------hCCCCchHH
Confidence            999999 999999999999999  677778999999999999999999976632  1111           111112223


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419          160 CWKHVFSFVVETMETAVKSWHETSKVDA  187 (268)
Q Consensus       160 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~  187 (268)
                      ...+......+++++|+..+++++...|
T Consensus       151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          151 KELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3344445555666666666666655544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=4.8e-21  Score=152.07  Aligned_cols=181  Identities=13%  Similarity=0.151  Sum_probs=140.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EK   76 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~   76 (268)
                      .|.++..++.+|..++..|+|++|+..|+++++.+|++   ..+++.+|.|+..+|++++|+..|++++..+|++   +.
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            46778999999999999999999999999999999999   8999999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH
Q 024419           77 GYFRKGCILEA--------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK  148 (268)
Q Consensus        77 ~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (268)
                      +++.+|.++..        .|++++|+..|+++++.+|+++.+...+..+....+...                      
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~----------------------  148 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA----------------------  148 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH----------------------
Confidence            89999999999        999999999999999999999876644433322211111                      


Q ss_pred             HHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------HHHHh----------hhhhhhHhhhhH
Q 024419          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------VYFLL----------DKEKTDTEKYAP  205 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~----------~~~~~a~~~~~~  205 (268)
                              ......+.++...+++++|+..|++++...|.             +|..+          |++++|+..|++
T Consensus       149 --------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~  220 (261)
T 3qky_A          149 --------RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER  220 (261)
T ss_dssp             --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence                    01233444555567777777777777666654             23333          555666666666


Q ss_pred             HhcCCccc
Q 024419          206 IVNVDKAF  213 (268)
Q Consensus       206 ~~~~~~~~  213 (268)
                      ++...|..
T Consensus       221 ~~~~~p~~  228 (261)
T 3qky_A          221 LLQIFPDS  228 (261)
T ss_dssp             HHHHCTTC
T ss_pred             HHHHCCCC
Confidence            66665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=6.2e-22  Score=154.77  Aligned_cols=206  Identities=17%  Similarity=0.226  Sum_probs=139.0

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      +...|++++|+..++++++.+|+++.++..++.++...|++++|.....  ..+..           ...........+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~~-----------~~~~~~~~~~l~~  167 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ--RAVEL-----------NENDTEARFQFGM  167 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHH-----------CTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHh-----------CCccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999976631  11111           1111112223333


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhh
Q 024419          165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLV  241 (268)
Q Consensus       165 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~  241 (268)
                      +....+++++|+..                        ++.++...|.... ....+.++...+++  |...|++++ .+
T Consensus       168 ~~~~~~~~~~A~~~------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~  222 (243)
T 2q7f_A          168 CLANEGMLDEALSQ------------------------FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI-DI  222 (243)
T ss_dssp             HHHHHTCCHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH-HH
T ss_pred             HHHHcCCHHHHHHH------------------------HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-cc
Confidence            34444444444444                        4444444332211 11245555555555  777888888 78


Q ss_pred             CCCCccc
Q 024419          242 APKSIIS  248 (268)
Q Consensus       242 ~p~~~~~  248 (268)
                      +|++..+
T Consensus       223 ~p~~~~~  229 (243)
T 2q7f_A          223 QPDHMLA  229 (243)
T ss_dssp             CTTCHHH
T ss_pred             CcchHHH
Confidence            8876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=2.9e-21  Score=152.04  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=123.2

Q ss_pred             chHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.+ +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            3554 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      |.++...|++++|+..+++++.  .+|.+..++..++.++...|++++|...
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY  163 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999  8899999999999999999999999766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=9.6e-23  Score=166.09  Aligned_cols=228  Identities=12%  Similarity=0.085  Sum_probs=181.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK-   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-   81 (268)
                      .|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+ 
T Consensus        51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  130 (327)
T 3cv0_A           51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL  130 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence            4677889999999999999999999999999999999999999999999999999999999999999999998888777 


Q ss_pred             -------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419           82 -------------GC-ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF  147 (268)
Q Consensus        82 -------------a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (268)
                                   |. ++...|++++|+..++++++.+|+++.++..++.++...|++++|.....  ..+.        
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~~~~--------  200 (327)
T 3cv0_A          131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR--RAVE--------  200 (327)
T ss_dssp             ---------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH--------
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHH--------
Confidence                         76 78899999999999999999999999999999999999999999977632  1111        


Q ss_pred             HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--
Q 024419          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--  215 (268)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--  215 (268)
                         ..+.........+.+....+++++|+..+.+++...|.          ++...|++++|...+++++.+.|....  
T Consensus       201 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  277 (327)
T 3cv0_A          201 ---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT  277 (327)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred             ---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence               11222234455666777789999999999999988875          577889999999999999999776211  


Q ss_pred             -----------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          216 -----------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       216 -----------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                                 ....+.++..++++  |...+++++ ...|+
T Consensus       278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~  318 (327)
T 3cv0_A          278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV-EPFAK  318 (327)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS-HHHHH
T ss_pred             ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hhcch
Confidence                       11134444444544  666666666 55443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.88  E-value=5.2e-22  Score=144.65  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++..++.+|.+++..|+|++|+++|+++++++|+++.+|..+|.+|..+|++++|+.+|+++++++|+++.+++.+|
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  106 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA  106 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45667777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSA-FQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      .++...|++++|... ++++++++|+++.++...+.++...
T Consensus       107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A          107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            888888888776655 4788888888888877777765443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.9e-21  Score=163.74  Aligned_cols=242  Identities=14%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             HhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            5 AEEMSLKDKGNEFFKA--GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---LVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      ..+..+..+|.++...  ++|++|+++|+++++++|+++.++..+|.++..   .++.++|++.++++++++|+++.++.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~  213 (472)
T 4g1t_A          134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV  213 (472)
T ss_dssp             CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence            3456666677666543  467777777777777777777777777766443   34445555566666555555555555


Q ss_pred             HHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-------------------
Q 024419           80 RKGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-------------------  136 (268)
Q Consensus        80 ~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------------  136 (268)
                      .+|..+...    +++++|+..+++++..+|+++.++..+|.++...|++++|........                   
T Consensus       214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            554443332    344455555555555555555555555555555555544443221000                   


Q ss_pred             ---------------------hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------H
Q 024419          137 ---------------------NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------V  189 (268)
Q Consensus       137 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~  189 (268)
                                           ..+.....-.....+.+.........+..+...+++++|+..|.+++.+.|.      +
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~  373 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL  373 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence                                 0000000001111233445556667778888889999999999999877653      1


Q ss_pred             --------HHHhhhhhhhHhhhhHHhcCCcccc-------------------------CccchhHHHHHHHHH--HHHHH
Q 024419          190 --------YFLLDKEKTDTEKYAPIVNVDKAFE-------------------------SPHTHGSCFQFLRQY--ADDSF  234 (268)
Q Consensus       190 --------~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~--a~~~~  234 (268)
                              ....|+.++|+..|.+++.+.|...                         .....|.++...|++  |.+.|
T Consensus       374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y  453 (472)
T 4g1t_A          374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS  453 (472)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                    2245778889999999988865431                         111256677777777  99999


Q ss_pred             HHHhhhhCCCCcc
Q 024419          235 SSAACLVAPKSII  247 (268)
Q Consensus       235 ~ka~~~~~p~~~~  247 (268)
                      ++|+ ++.|.+..
T Consensus       454 ~kAL-e~~~~~p~  465 (472)
T 4g1t_A          454 ERGL-ESGSLIPS  465 (472)
T ss_dssp             -------------
T ss_pred             HHHH-hcCCCCCc
Confidence            9999 88887643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=6.2e-22  Score=157.63  Aligned_cols=221  Identities=14%  Similarity=0.078  Sum_probs=174.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQD----PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   89 (268)
                      +..+...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            334455689999999999999983    5678899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH
Q 024419           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV  169 (268)
Q Consensus        90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (268)
                      ++++|+..|+++++++|+++.++..+|.++...|++++|.....  ..+...+..           ........ .....
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~-----------~~~~~~~~-~~~~~  157 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL--AFYQDDPND-----------PFRSLWLY-LAEQK  157 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTC-----------HHHHHHHH-HHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCCC-----------hHHHHHHH-HHHHh
Confidence            99999999999999999999999999999999999999977632  111111111           11111112 22456


Q ss_pred             HHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccc-----cCccchhHHHHHHHHH--HHHH
Q 024419          170 ETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSCFQFLRQY--ADDS  233 (268)
Q Consensus       170 ~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--a~~~  233 (268)
                      +++++|+..+.+++...|.         .+...++..+|+..+..++...+..     ......|.++...+++  |...
T Consensus       158 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  237 (275)
T 1xnf_A          158 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL  237 (275)
T ss_dssp             HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence            8899999999888877664         3445567788999999998886642     1122366777777777  9999


Q ss_pred             HHHHhhhhCCCCcccc
Q 024419          234 FSSAACLVAPKSIISY  249 (268)
Q Consensus       234 ~~ka~~~~~p~~~~~~  249 (268)
                      |++++ .++|++...+
T Consensus       238 ~~~al-~~~p~~~~~~  252 (275)
T 1xnf_A          238 FKLAV-ANNVHNFVEH  252 (275)
T ss_dssp             HHHHH-TTCCTTCHHH
T ss_pred             HHHHH-hCCchhHHHH
Confidence            99999 9999875544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.87  E-value=2.5e-21  Score=140.89  Aligned_cols=107  Identities=13%  Similarity=0.088  Sum_probs=104.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.+++.+|..++..|++++|+..|++++..+|+++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+.+|
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      .++..+|++++|+..|++++++.|+.+
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.87  E-value=5.1e-21  Score=152.81  Aligned_cols=222  Identities=16%  Similarity=0.173  Sum_probs=179.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      .|.++.+++.+|..+...|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+..|+++++.+  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            578899999999999999999999999999998  8889999999999999    999999999999999986  89999


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        79 ~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      +.+|.++..    .+++++|+..|+++++.  +++.++..+|.++..    .+++++|.......  +.           
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a--~~-----------  142 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA--CD-----------  142 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH--HH-----------
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH--Hh-----------
Confidence            999999999    99999999999999987  489999999999998    89999997663211  11           


Q ss_pred             hhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH----hhhhhhhHhhhhHHhcCCcccc
Q 024419          151 MSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL----LDKEKTDTEKYAPIVNVDKAFE  214 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~----~~~~~~a~~~~~~~~~~~~~~~  214 (268)
                        ..........+.++..    .+++++|+..|++++...+.        +|..    .+++++|+..|++++..++.. 
T Consensus       143 --~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~-  219 (273)
T 1ouv_A          143 --LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGG-  219 (273)
T ss_dssp             --TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHH-
T ss_pred             --cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHH-
Confidence              1112223344444544    67889999999998776543        4556    889999999999999986622 


Q ss_pred             CccchhHHHHH----HHHH--HHHHHHHHhhhhCCCCcc
Q 024419          215 SPHTHGSCFQF----LRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       215 ~~~~~~~~~~~----~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      .....+.++..    .+++  |.+.|++|+ ++.|++..
T Consensus       220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~  257 (273)
T 1ouv_A          220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGAC  257 (273)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHH
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHH
Confidence            12225666665    5566  999999999 99998654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.87  E-value=4.6e-21  Score=144.04  Aligned_cols=170  Identities=11%  Similarity=0.127  Sum_probs=125.4

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (268)
Q Consensus        38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  117 (268)
                      ++++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++..+|+++.++..++.
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhh
Q 024419          118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEK  197 (268)
Q Consensus       118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  197 (268)
                      ++...++++.+.....  ..           ..+.+.........+.++...+++++|+..|+                 
T Consensus        82 ~~~~~~~~~~a~~~~~--~a-----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~-----------------  131 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQ--RA-----------IALNTVYADAYYKLGLVYDSMGEHDKAIEAYE-----------------  131 (184)
T ss_dssp             HHHHTTCHHHHHHHHH--HH-----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred             HHHHcCCHHHHHHHHH--HH-----------HHhCccchHHHHHHHHHHHHhCCchhHHHHHH-----------------
Confidence            9998888888865521  00           11112222223333444444444555555544                 


Q ss_pred             hhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          198 TDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       198 ~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                             +++.++|..... ...|.++...|++  |.+.|++|+ +++|++
T Consensus       132 -------~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~  174 (184)
T 3vtx_A          132 -------KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL-EKEEKK  174 (184)
T ss_dssp             -------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTHHH
T ss_pred             -------HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-hCCccC
Confidence                   444444433211 2256666667766  888888888 888776

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.9e-21  Score=133.95  Aligned_cols=118  Identities=27%  Similarity=0.466  Sum_probs=113.4

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.|+..+|++++|+..|++++.++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQL  121 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~  121 (268)
                      ++..+|++++|+..|+++++++      |++..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      9999999888877643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=160.88  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=104.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN---   71 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---   71 (268)
                      +..+..+..+|.++...|++++|+++|++|+++         +|....+|.++|.+|..+|++++|+..+++++.+.   
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            344667888999999999999999999999986         67778899999999999999999999999999873   


Q ss_pred             -----CCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           72 -----PQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        72 -----p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                           +..+.++..+|.++...  ++|++|+++|+++++++|+++.++..++.+....+.+
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence                 45678888888877765  4799999999999999999999999999887666544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=5.6e-21  Score=152.01  Aligned_cols=197  Identities=8%  Similarity=0.062  Sum_probs=153.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      .|.++.++..+|.++...|++++|+..++++++ .|.+    ..++..+|.++...|++++|+..|+++++.+|.++.++
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence            456677899999999999999999999999999 4444    34599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE  158 (268)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (268)
                      ..+|.++...|++++|+..|+++++++|+++.++..+|......+++++|.....  ..+...           +.....
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~-----------p~~~~~  178 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV--KVLELK-----------PNIYIG  178 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHS-----------TTCHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC-----------ccchHH
Confidence            9999999999999999999999999999999999999944444558888866532  111111           111222


Q ss_pred             hhhHHHHHHHHHH---HHHHHHhhhhhhhch---h---------------HHHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          159 ECWKHVFSFVVET---METAVKSWHETSKVD---A---------------KVYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       159 ~~~~~~~~~~~~~---~~~A~~~~~~~~~~~---~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      ....+......+.   +++|+..+++++.+.   |               .+|...|++++|+..+++++.++|..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  254 (272)
T 3u4t_A          179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN  254 (272)
T ss_dssp             HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence            3334444444444   445555555554443   1               15668899999999999999999865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.86  E-value=2.7e-20  Score=135.23  Aligned_cols=121  Identities=14%  Similarity=0.096  Sum_probs=112.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.+++.+|..++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      .++..+|++++|+..|+++++++|+++........+...+.
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999998876555544444333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.85  E-value=3.8e-20  Score=133.42  Aligned_cols=123  Identities=15%  Similarity=0.100  Sum_probs=114.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.+...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.+++.+|
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  125 (268)
                      .++..+|++++|+..|+++++++|+++........+...++..
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987766666655544443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=5.5e-20  Score=158.37  Aligned_cols=194  Identities=12%  Similarity=0.117  Sum_probs=163.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL-NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  100 (268)
                      .+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|..+|.++...|++++|+..|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            377888889998999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHH---------HHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH--
Q 024419          101 ALQYNPQSAEVSRKIKRVSQLA---------KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV--  169 (268)
Q Consensus       101 ~l~~~p~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  169 (268)
                      +++++|+ ..++..+|.++...         |++++|.....  ..+.           +.+.....+...+..+...  
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~--~al~-----------~~p~~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK--LAVQ-----------MDVLDGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH--HHHH-----------HCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH--HHHH-----------hCCCCHHHHHHHHHHHHHHHH
Confidence            9999999 79999999999999         99999976631  1111           2233344556666667777  


Q ss_pred             ------HHHHHHHHhhhhhhhchh---H----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHHHHH
Q 024419          170 ------ETMETAVKSWHETSKVDA---K----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY  229 (268)
Q Consensus       170 ------~~~~~A~~~~~~~~~~~~---~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  229 (268)
                            +++++|+..|++++.++|   .          +|..+|++++|+..|++++.++|...... ..+.++..++++
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                  999999999999999998   4          57788999999999999999998763222 255566666655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=3.4e-19  Score=144.98  Aligned_cols=209  Identities=11%  Similarity=0.031  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKL-------NKALADAETTIS-LNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~   88 (268)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH--H
Q 024419           89 EQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV--F  165 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  165 (268)
                      |++++|+..|+++++++|.++. +|..++.++...|++++|......  .             +.........+.+.  +
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a-------------~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK--A-------------REDARTRHHVYVTAALM  177 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH--H-------------HTSTTCCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH--H-------------HhcCCCCHHHHHHHHHH
Confidence            9999999999999999999987 999999999999999998766321  1             11111112122222  2


Q ss_pred             HHH-HHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC---Ccc-cc-CccchhHHHHHHHHH
Q 024419          166 SFV-VETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV---DKA-FE-SPHTHGSCFQFLRQY  229 (268)
Q Consensus       166 ~~~-~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~  229 (268)
                      ... .+++++|+..|+++++.+|.          ++...|+.++|...|++++..   +|. .. .....+.+....|.+
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            221 47899999999999999886          345678999999999999995   432 11 111134455555655


Q ss_pred             --HHHHHHHHhhhhCCCCccc
Q 024419          230 --ADDSFSSAACLVAPKSIIS  248 (268)
Q Consensus       230 --a~~~~~ka~~~~~p~~~~~  248 (268)
                        +...+++++ +..|++...
T Consensus       258 ~~a~~~~~~a~-~~~p~~~~~  277 (308)
T 2ond_A          258 ASILKVEKRRF-TAFREEYEG  277 (308)
T ss_dssp             HHHHHHHHHHH-HHTTTTTSS
T ss_pred             HHHHHHHHHHH-HHccccccc
Confidence              999999999 999987643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=1.3e-19  Score=141.48  Aligned_cols=173  Identities=14%  Similarity=0.102  Sum_probs=145.1

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .++...|++++|+..++++++.+|+++.++..++.++...|++++|.....  ..+.           ............
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~~~l  199 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA--AVTE-----------QDPGHADAFYNA  199 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH--HHHH-----------HCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------hCcccHHHHHHH
Confidence            999999999999999999999999999999999999999999999976632  1111           111122233444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          163 HVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      +.++...+++++|+..+++++.++|.
T Consensus       200 a~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          200 GVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHccCcc
Confidence            44555556666666666666666554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.85  E-value=2.5e-19  Score=139.15  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GYF   79 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~   79 (268)
                      .+..++.+|..++..|+|++|+..|++++...|++.   .+++.+|.++..+|++++|+..|+++++.+|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467899999999999999999999999999999874   78999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHh
Q 024419           80 RKGCILEA------------------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV  141 (268)
Q Consensus        80 ~la~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  141 (268)
                      .+|.++..                  .|++++|+..|+++++.+|+++.++..+..+....+....              
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~--------------  148 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK--------------  148 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH--------------
Confidence            99999886                  5799999999999999999998766543332221111100              


Q ss_pred             hhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------HHHHhhhhhhhHhhhhHHhc
Q 024419          142 QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------VYFLLDKEKTDTEKYAPIVN  208 (268)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~  208 (268)
                                      .....+.++...+++++|+..|+++++..|+             ++..+|+.++|+..++.+..
T Consensus       149 ----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          149 ----------------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             ----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                            1123344555667777777777777776654             34455666666666665555


Q ss_pred             CCccc
Q 024419          209 VDKAF  213 (268)
Q Consensus       209 ~~~~~  213 (268)
                      ..|..
T Consensus       213 ~~~~~  217 (225)
T 2yhc_A          213 NSSNT  217 (225)
T ss_dssp             CCSCC
T ss_pred             hCCCc
Confidence            55544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.84  E-value=7.5e-20  Score=129.31  Aligned_cols=112  Identities=26%  Similarity=0.391  Sum_probs=102.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK   76 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~   76 (268)
                      ++.+.++.++|+.++..|+|++|+.+|+++++++|+++.+|.++|.||..+|++++|+..|+++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999998876       35


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      ++.++|.++..+|++++|++.|+++++.+|+ ++....+.
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            8999999999999999999999999999885 55544443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.2e-19  Score=135.46  Aligned_cols=172  Identities=16%  Similarity=0.141  Sum_probs=144.1

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      +..+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ++...|++++|+..++++++.+|+++.++..++.++...|++++|.....  ..+.           ..+.........+
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~~~la  151 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK--IALG-----------LRPNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCTTCHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH--HHHh-----------cCccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999976632  1111           1111222334444


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .+....+++++|+..+.+++.+.|.
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4555566677777777766666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.84  E-value=1.4e-19  Score=152.34  Aligned_cols=234  Identities=16%  Similarity=0.221  Sum_probs=184.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQ   73 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~   73 (268)
                      +..+..+..+|..++..|++++|+..|+++++.+|++.    .++..+|.++...|++++|+..+++++.+      +|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            56778889999999999999999999999999999986    58999999999999999999999999998      577


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH-----------------HHHhHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKD-----------------KKRAQE  130 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~a~~  130 (268)
                      ...++..+|.++...|++++|+..|++++++      .|....++..+|.++...|+                 +++|..
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            7899999999999999999999999999998      56677899999999999999                 888866


Q ss_pred             HHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhh
Q 024419          131 VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLD  194 (268)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~  194 (268)
                      ....  .+.......     ........+...+.++...+++++|+..+.+++.+.+.                ++...|
T Consensus       205 ~~~~--al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (411)
T 4a1s_A          205 FYQE--NLKLMRDLG-----DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG  277 (411)
T ss_dssp             HHHH--HHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHH--HHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence            5321  111111100     00112234455666777788899999999988877764                466788


Q ss_pred             hhhhhHhhhhHHhcCCccccCc-------cchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          195 KEKTDTEKYAPIVNVDKAFESP-------HTHGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       195 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      ++++|+..++.++.+.+.....       ...+.++...+++  |...|++++ .+.++.
T Consensus       278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~  336 (411)
T 4a1s_A          278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-AIAQEL  336 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHC
Confidence            9999999999999886543111       1245555666666  999999999 776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.84  E-value=1.7e-19  Score=140.18  Aligned_cols=203  Identities=12%  Similarity=0.106  Sum_probs=154.1

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      .+.++..++.+|.++...|++++|+..|++++.++| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            356779999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HH
Q 024419          116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VY  190 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~  190 (268)
                      |.++...|++++|.....  ..+...+....    ........+...|......+++++|+..|++++.++|.     ++
T Consensus        83 ~~~~~~~~~~~~A~~~~~--~al~~~p~~~~----~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  156 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLT--EGIKAVPGNAT----IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHH--HHHHHSTTCHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHH--HHHHHCCCcHH----HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence            999999999999976632  22222222111    11122345666777788899999999999999999887     34


Q ss_pred             HHhhhhhhh--HhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419          191 FLLDKEKTD--TEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       191 ~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~  247 (268)
                      ..+|.....  ...+..+..+.+... ....+......+.|  |...|++|+ +++|++..
T Consensus       157 ~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~-~l~p~~~~  215 (228)
T 4i17_A          157 YSLGVLFYNNGADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAV-TLSPNRTE  215 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHH
Confidence            444443322  222355555543321 11133344455566  999999999 99999854

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.84  E-value=1.9e-20  Score=135.20  Aligned_cols=118  Identities=17%  Similarity=0.239  Sum_probs=109.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHHcCChHHHHHHHHHHHhh--
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPT-----LFSNRAAAFLHLVKLNKALADAETTISL--   70 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~--   70 (268)
                      ..+..+..+|..++..|+|++|+..|+++++++|+       +..     +|.++|.|+..+|++++|+.+|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            45778899999999999999999999999999999       444     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           71 -----NPQWEKGY----FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        71 -----~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                           +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                 99999999    99999999999999999999999999999988877777665444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=3.7e-21  Score=140.13  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=109.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD   92 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~   92 (268)
                      +|.++...|++++|+..+++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            67788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      +|+..|+++++++|+++.++..+|.++...+++++|..
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            99999999999999999999999999999998876543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.84  E-value=1.6e-19  Score=133.29  Aligned_cols=116  Identities=31%  Similarity=0.406  Sum_probs=109.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .+.++..++.+|..++..|+|++|+..|+++++.+|+++.+++++|.||..+|++++|+..|++++.++|+++.+|+.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .++..+|++++|+..|+++++++|++..++...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            999999999999999999999999998866555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.84  E-value=7.1e-20  Score=134.87  Aligned_cols=124  Identities=27%  Similarity=0.395  Sum_probs=115.0

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------------------DPSNPTLFSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      ..+..+..+|..++..|+|++|+..|++++..                  +|.+..+++++|.||..+|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45788999999999999999999999999999                  777789999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHh
Q 024419           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~a  128 (268)
                      ++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...++.+....+...+.
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 7788888887776655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=1.9e-20  Score=167.90  Aligned_cols=164  Identities=11%  Similarity=0.157  Sum_probs=144.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      -.|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------
Q 024419          116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------  188 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------  188 (268)
                      |.++..+|++++|++...  +.+           .+.+.....+...+.++..++++++|+..|+++++++|+       
T Consensus        84 g~~l~~~g~~~~A~~~~~--kAl-----------~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~  150 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYT--RAI-----------QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN  150 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH--HHH-----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence            999999999999976631  111           233445556677888888999999999999999999996       


Q ss_pred             ---HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          189 ---VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       189 ---~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                         ++..+|++++|.+.+++++.+.+.
T Consensus       151 L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          151 LAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence               567889999999999999987543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.83  E-value=6.7e-20  Score=153.59  Aligned_cols=232  Identities=17%  Similarity=0.241  Sum_probs=167.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW   74 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~   74 (268)
                      ..+.++..+|..++..|++++|+..|+++++..|.+    ..++..+|.++...|++++|+..+++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            456788999999999999999999999999999998    468999999999999999999999999987      4455


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHHh
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKRA  128 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~a  128 (268)
                      +.++..+|.++...|++++|+..+++++++.|..      ..++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            7899999999999999999999999999987754      4589999999999999                    8888


Q ss_pred             HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL  192 (268)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~  192 (268)
                      .......  +.......     ............+.++...+++++|+..+.+++.+.+.                ++..
T Consensus       167 ~~~~~~a--l~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          167 VDFYEEN--LSLVTALG-----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHH--HHHHHHTT-----CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHhcc-----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            7653211  11100000     00111223344455566667777777777776665543                3556


Q ss_pred             hhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          193 LDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       193 ~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      .|++++|+..+++++.+.+......       ..|.++...+++  |...|++++ .+.|+
T Consensus       240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~  299 (406)
T 3sf4_A          240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQE  299 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHh
Confidence            6777777777777776644321111       134444444455  777777777 66544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.83  E-value=6.8e-19  Score=143.25  Aligned_cols=234  Identities=17%  Similarity=0.243  Sum_probs=180.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQ   73 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~   73 (268)
                      +.....++..|..++..|++++|+..|+++++.+|++    ..++..+|.++...|++++|+..+++++.+      .|.
T Consensus         2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (338)
T 3ro2_A            2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   81 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence            4567789999999999999999999999999999998    478899999999999999999999999987      455


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKR  127 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~  127 (268)
                      .+.++..+|.++...|++++|+..+++++++.|..      ..++..+|.++...|+                    +++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            67899999999999999999999999999987654      3489999999999999                    888


Q ss_pred             hHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHH
Q 024419          128 AQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYF  191 (268)
Q Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~  191 (268)
                      |......  .+.......     ............+..+...+++++|+..+.+++.+.+.                ++.
T Consensus       162 A~~~~~~--a~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  234 (338)
T 3ro2_A          162 AVDLYEE--NLSLVTALG-----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI  234 (338)
T ss_dssp             HHHHHHH--HHHHHHHHT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            8665321  111111100     01111224455566677788899999999988877654                466


Q ss_pred             HhhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          192 LLDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       192 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      ..|++++|...++.++.+.+......       ..+.++...+++  |...|++++ .+.|..
T Consensus       235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~  296 (338)
T 3ro2_A          235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQEL  296 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhc
Confidence            88999999999999998755432111       145555566666  999999999 776643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.83  E-value=3.2e-19  Score=143.29  Aligned_cols=106  Identities=31%  Similarity=0.479  Sum_probs=102.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      ++..+|++++|+..|+++++++|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999774

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.83  E-value=6.3e-19  Score=145.18  Aligned_cols=128  Identities=21%  Similarity=0.317  Sum_probs=123.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      .|..+.++..+|..++..|++++|+..|++++.++|.+               ..++.++|.|+..+|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999               699999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      +.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988854

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=5.2e-20  Score=148.82  Aligned_cols=237  Identities=12%  Similarity=0.064  Sum_probs=171.5

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---   70 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---   70 (268)
                      ..|..+.++..+|..+...|++++|+..++++++.        +|....++..+|.++...|++++|+..+++++.+   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999995        6777899999999999999999999999999987   


Q ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 024419           71 -----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN  137 (268)
Q Consensus        71 -----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  137 (268)
                           +|....++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|.......  
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--  179 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA--  179 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence                 45668899999999999999999999999999884        566778999999999999999997764211  


Q ss_pred             HHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHH-------------------------HHH
Q 024419          138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV-------------------------YFL  192 (268)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------~~~  192 (268)
                      +......   ...............+.++...+++++|+..+.+++.+.|..                         +..
T Consensus       180 ~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          180 LEIYQTK---LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHT---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHH---hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            1110000   000011122334555667778899999999999998776541                         112


Q ss_pred             hhhhhhhHhhhhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          193 LDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       193 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      .+...++...+..++...|.... ....+.++...|++  |.+.|++|+ ++.|+
T Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~~  310 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM-RSRKQ  310 (311)
T ss_dssp             -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHC-
T ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhhc
Confidence            23334444444444444443211 12266777777777  999999999 88875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.2e-19  Score=139.60  Aligned_cols=125  Identities=14%  Similarity=0.158  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNP------   72 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------   72 (268)
                      ++.++..+|.++...|++++|+..++++++.+|++       +.++..+|.++...|++++|+..|++++.++|      
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  116 (258)
T 3uq3_A           37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT  116 (258)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence            46788999999999999999999999999999877       79999999999999999999999999999555      


Q ss_pred             --------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           73 --------------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        73 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                                          .++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|..
T Consensus       117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence                                4444555555555555555555555555555555555555555555555555555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.81  E-value=9.5e-19  Score=124.76  Aligned_cols=123  Identities=27%  Similarity=0.431  Sum_probs=113.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.|+..+|++++|+..+++++.++|+++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAKDK  125 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~  125 (268)
                      .++...|++++|+..|+++++++|+     +..+...+..+.......
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998     777877777776554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=1.1e-18  Score=137.30  Aligned_cols=130  Identities=14%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~   80 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++.  .+|.+..++..
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            3667889999999999999999999999999999999999999999999999999999999999999  88999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +|.++...|++++|+..++++++.+|.++.++..++.++...|++++|....
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997663

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=8.6e-19  Score=141.49  Aligned_cols=222  Identities=9%  Similarity=-0.052  Sum_probs=169.3

Q ss_pred             hHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHH
Q 024419            4 EAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR   80 (268)
Q Consensus         4 ~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~   80 (268)
                      |.+ .++...++..++..|++++|+..++.   .+|.+..++..++..+...+++++|++.+++++..  +|+++.+++.
T Consensus        30 p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~  106 (291)
T 3mkr_A           30 PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM  106 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence            444 45667789999999999999988866   25666778888999999999999999999999876  6999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (268)
                      +|.++...|++++|+..+++     |+++.++..++.++..+|++++|......  .+...+..           .....
T Consensus       107 la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~--~~~~~p~~-----------~~~~l  168 (291)
T 3mkr_A          107 AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKK--MQDQDEDA-----------TLTQL  168 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHCTTC-----------HHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHH--HHhhCcCc-----------HHHHH
Confidence            99999999999999999988     89999999999999999999999776321  11111110           00011


Q ss_pred             hHHHHHH--HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHHH
Q 024419          161 WKHVFSF--VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLR  227 (268)
Q Consensus       161 ~~~~~~~--~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  227 (268)
                      ..+.+..  ..+++++|+..|++++..+|.          ++..+|++++|...+++++.++|...... ..+.++...|
T Consensus       169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            1111111  237899999999999888775          46688999999999999999988763222 2555666666


Q ss_pred             HH---HHHHHHHHhhhhCCCCcc
Q 024419          228 QY---ADDSFSSAACLVAPKSII  247 (268)
Q Consensus       228 ~~---a~~~~~ka~~~~~p~~~~  247 (268)
                      ++   +...+++++ +++|++..
T Consensus       249 ~~~eaa~~~~~~~~-~~~P~~~~  270 (291)
T 3mkr_A          249 KPPEVTNRYLSQLK-DAHRSHPF  270 (291)
T ss_dssp             CCHHHHHHHHHHHH-HHCTTCHH
T ss_pred             CCHHHHHHHHHHHH-HhCCCChH
Confidence            55   467889999 99999854

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.81  E-value=1.8e-18  Score=121.58  Aligned_cols=122  Identities=30%  Similarity=0.498  Sum_probs=117.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++..+..+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      .++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999877664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=7.3e-19  Score=124.29  Aligned_cols=122  Identities=37%  Similarity=0.609  Sum_probs=116.9

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|..+.+++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      |.++...|++++|+..|+++++.+|++..++..++.++...+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999886554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.81  E-value=8.7e-18  Score=123.41  Aligned_cols=128  Identities=30%  Similarity=0.490  Sum_probs=119.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..+..+..+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE  132 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~  132 (268)
                      +...|++++|+..|+++++++|++..++..++.+  +...|++++|....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~  140 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  140 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999988555554  66778888886653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.81  E-value=3.3e-18  Score=130.08  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=119.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      +..+..+..+|..++..|+|++|+..|++++...|.++                .++.++|.|+..+|++++|+.+++++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999887                89999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      +.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus       115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988887765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=2.4e-19  Score=160.83  Aligned_cols=168  Identities=11%  Similarity=-0.008  Sum_probs=145.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAI--------KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      |.++.+.+..|   ...|++++|++.|++++        +.+|++..+++.+|.++..+|++++|+..|+++++.+|++.
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            45555666655   78899999999999999        99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY  155 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (268)
                      .+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +...  ...+           .+.+..
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~--~~al-----------~~~P~~  533 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY--QTVW-----------STNDGV  533 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH--HHHH-----------HHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH--HHHH-----------HhCCch
Confidence            9999999999999999999999999999999999999999999999998877 5542  1111           123334


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ...+..++..+...+++++|+..|+++++++|.
T Consensus       534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            445677788888899999999999999999987

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=3.3e-18  Score=139.10  Aligned_cols=198  Identities=10%  Similarity=-0.050  Sum_probs=160.5

Q ss_pred             chHhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFK-------AGNY-------LKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      .|.++..|+..|..+..       .|++       ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            47889999999999874       5885       999999999999 79999999999999999999999999999999


Q ss_pred             HhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHhHHHHhhhhhHHHhhhHH
Q 024419           68 ISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLD  145 (268)
Q Consensus        68 l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~  145 (268)
                      ++++|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+.++|..+..  ..+..     
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~--~al~~-----  198 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLKK-----  198 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH--HHHHH-----
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh-----
Confidence            999999987 999999999999999999999999999999998888877666433 477777765531  11111     


Q ss_pred             HHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc---hhH-----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---DAK-----------VYFLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------~~~~~~~~~~a~~~~~~~~~~~~  211 (268)
                            .+.....+...+.+....+++++|+..|++++..   .|+           .....|+.+.+...+++++...|
T Consensus       199 ------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          199 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             ------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence                  1122233344444555678899999999999884   443           23467899999999999999988


Q ss_pred             cc
Q 024419          212 AF  213 (268)
Q Consensus       212 ~~  213 (268)
                      ..
T Consensus       273 ~~  274 (308)
T 2ond_A          273 EE  274 (308)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=6.3e-18  Score=130.10  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHh--hCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-VKLNKALADAETTIS--LNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~   79 (268)
                      .|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..+++++.  .+|.+..++.
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            3667889999999999999999999999999999999999999999999999 999999999999999  6777789999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|....
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  170 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF  170 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997663

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.80  E-value=2.4e-18  Score=147.44  Aligned_cols=129  Identities=25%  Similarity=0.416  Sum_probs=119.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      .|..+..+..+|..++..|+|++|+..|+++++++|.+               ..+|+++|.||.++|++++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            36778899999999999999999999999999999998               699999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998887543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.80  E-value=1.3e-18  Score=121.88  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      ..|++++|+..|+++++++|++..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999998754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=2.8e-17  Score=132.57  Aligned_cols=210  Identities=10%  Similarity=-0.003  Sum_probs=164.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      |....++..++..+...+++++|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+
T Consensus        62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l  136 (291)
T 3mkr_A           62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMT  136 (291)
T ss_dssp             CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHH
T ss_pred             ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHH
Confidence            446788899999999999999999999999976  699999999999999999999999999998     8999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (268)
                      |.++..+|++++|+..|+++++.+|++.......+.  +....|++++|.....  ..+           ...+.....+
T Consensus       137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~--~~l-----------~~~p~~~~~~  203 (291)
T 3mkr_A          137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ--EMA-----------DKCSPTLLLL  203 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHH--HHH-----------HHSCCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHH--HHH-----------HhCCCcHHHH
Confidence            999999999999999999999999998755443332  2223377888866531  111           1122333445


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhh-hHhhhhHHhcCCccccCccchhHHHHHHHH
Q 024419          160 CWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVDKAFESPHTHGSCFQFLRQ  228 (268)
Q Consensus       160 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (268)
                      ...+......+++++|...+++++.++|.          ++..+|+..+ +...+++++.++|..      ..+..   .
T Consensus       204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~------~~~~d---~  274 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH------PFIKE---Y  274 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHH---H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC------hHHHH---H
Confidence            66777888899999999999999999986          4557788766 567889999999865      11111   1


Q ss_pred             H-HHHHHHHHhhh
Q 024419          229 Y-ADDSFSSAACL  240 (268)
Q Consensus       229 ~-a~~~~~ka~~~  240 (268)
                      . ....|++++.+
T Consensus       275 ~~~~~~fd~~~~~  287 (291)
T 3mkr_A          275 RAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            2 67777777633

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.79  E-value=3.8e-19  Score=148.87  Aligned_cols=226  Identities=10%  Similarity=0.054  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK   76 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~   76 (268)
                      ++.+|..++..|++++|+..|++++++      .+..+.++..+|.+|..+|++++|+..+++++.+.+.       .+.
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            344999999999999999999999997      2235689999999999999999999999999998443       356


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ++..+|.++...|++++|+..|++++++.|...      .++..+|.++...|++++|.....  ..+......      
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~--~al~~~~~~------  257 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK--RAIAVFEES------  257 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhh------
Confidence            899999999999999999999999999866443      589999999999999999977642  111110000      


Q ss_pred             hh-hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------HHHHhhh---hhhhHhhhhHHhcCCc
Q 024419          151 MS-EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDK---EKTDTEKYAPIVNVDK  211 (268)
Q Consensus       151 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~---~~~a~~~~~~~~~~~~  211 (268)
                      .. ..........+.++...+++++|+..+++++.+.+.               ++...|+   ..+|+..+++.-....
T Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~  337 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD  337 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence            00 122334556677778889999999999999888543               2223344   5555555554421111


Q ss_pred             cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      ........|.++...|++  |...|++|+ .+..+
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al-~~~~~  371 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVE-QVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHH
Confidence            111112266677777777  999999999 77654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.79  E-value=1.1e-17  Score=115.43  Aligned_cols=114  Identities=32%  Similarity=0.574  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      .+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      ...|++++|+..++++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999888774

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=1.8e-18  Score=139.70  Aligned_cols=167  Identities=14%  Similarity=0.087  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EK   76 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~   76 (268)
                      .+...|.++...|++++|+..|.+++.+.+.      .+.++.++|.+|..+|++++|+.+|++++.+.|..      ..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4566678888999999999999999998542      26789999999999999999999999999998754      56


Q ss_pred             HHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           77 GYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        77 ~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      ++..+|.+|... |++++|+.+|++++++.|.+      ..++..+|.++..+|++++|.....  ..+.          
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~----------  186 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS--KLIK----------  186 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH----------
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHH----------
Confidence            899999999996 99999999999999998865      5678999999999999999976632  1111          


Q ss_pred             HhhhhcCc-------hhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          150 EMSEKYGA-------EECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       150 ~~~~~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                       +.+....       .+...+..+...+++++|+..|++++.++|.
T Consensus       187 -~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          187 -SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             -TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             -HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence             1111111       2234455566677777777777777777775

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=142.04  Aligned_cols=230  Identities=11%  Similarity=0.144  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------   74 (268)
                      +..+..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+..+++++.+.|..      
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            578899999999999999999999999987      45567899999999999999999999999999986643      


Q ss_pred             HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ..++..+|.++...|+                    +++|+..+++++.+      .|....++..++.++...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            4589999999999999                    99999999999877      334466899999999999999999


Q ss_pred             HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL  192 (268)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~  192 (268)
                      .....  ..+...+....     ...........+.++...+++++|+..+.+++.+.+.                ++..
T Consensus       203 ~~~~~--~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          203 VIAHE--QRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             HHHHH--HHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            77642  11111111100     0011224455666777789999999999988877654                4678


Q ss_pred             hhhhhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          193 LDKEKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       193 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      .|++++|...+++++.+.+....       ....+.++...|++  |...|++++ .+.++
T Consensus       276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~  335 (338)
T 3ro2_A          276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISRE  335 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HC---
T ss_pred             hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHh
Confidence            89999999999999988554321       12256666777777  999999999 77664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1.8e-19  Score=131.04  Aligned_cols=110  Identities=11%  Similarity=-0.020  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      +-.+-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            33344567788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419          103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +++|+++.++..+|.++..+|++++|....
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~  127 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECF  127 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999997663

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=1.6e-18  Score=155.51  Aligned_cols=129  Identities=14%  Similarity=-0.002  Sum_probs=125.2

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.+++.+|.++...|++++|+..|+++++.+|++..+|+++|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            37788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++...|++++ +..|+++++++|++..++..+|.++...|++++|....
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999 99999999999999999999999999999999997664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=1.9e-18  Score=145.46  Aligned_cols=230  Identities=13%  Similarity=0.147  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~   74 (268)
                      +.++..+|.+++..|++++|+..|+++++.      +|....++..+|.++..+|++++|+..+++++.+      .|..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence            468999999999999999999999999998      5777899999999999999999999999999998      5667


Q ss_pred             HHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           75 EKGYFRKGCILEAMEQ-----------------YDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ..++..+|.++...|+                 +++|+..+++++++.      |....++..+|.++...|++++|...
T Consensus       166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH  245 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            8899999999999999                 999999999998874      33456899999999999999999776


Q ss_pred             HhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhh
Q 024419          132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDK  195 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~  195 (268)
                      ..  ..+...+....     ...........+.++...+++++|+..+.+++.+.+.                ++...|+
T Consensus       246 ~~--~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (411)
T 4a1s_A          246 HQ--ERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE  318 (411)
T ss_dssp             HH--HHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HH--HHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            42  11111111100     0001124455666677788889999999888877763                4678899


Q ss_pred             hhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          196 EKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       196 ~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      +++|...+++++.+.+....       ....+.++...|++  |...|++|+ .+.+.
T Consensus       319 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~  375 (411)
T 4a1s_A          319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL-QLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCH
T ss_pred             HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHhh
Confidence            99999999999988554321       12255666666666  999999999 87664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.78  E-value=4.3e-18  Score=142.54  Aligned_cols=231  Identities=11%  Similarity=0.140  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------   74 (268)
                      +..+..+|.+++..|++++|+.++++++..      .|..+.++..+|.++..+|++++|+..+++++.+.|..      
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            578999999999999999999999999887      34557899999999999999999999999999987653      


Q ss_pred             HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ..++..+|.++...|+                    +++|+..+++++.+      .|....++..+|.++...|++++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            5689999999999999                    99999999999987      344467899999999999999999


Q ss_pred             HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL  192 (268)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~  192 (268)
                      .....  ..+...+....     ...........+.++...+++++|+..+.+++.+.|.                ++..
T Consensus       207 ~~~~~--~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          207 VIAHE--QRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             HHHHH--HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            77632  11111111000     0011124555666777788999999999988877664                4668


Q ss_pred             hhhhhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          193 LDKEKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       193 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      .|++++|...++.++.+.+....       ....+.++...|++  |...|++++ .+.+..
T Consensus       280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~  340 (406)
T 3sf4_A          280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISREV  340 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHT
T ss_pred             hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHh
Confidence            89999999999999988544321       12256666777777  999999999 775543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.78  E-value=2.4e-17  Score=131.37  Aligned_cols=189  Identities=15%  Similarity=0.159  Sum_probs=158.7

Q ss_pred             hHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 024419            4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      |.++.+++.+|.++..    .+++++|+..|+++++.+  ++.+++.+|.+|..    .+++++|+..|++++..+  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            5567889999999999    999999999999999985  89999999999999    999999999999999984  89


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419           76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEF  147 (268)
Q Consensus        76 ~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (268)
                      .+++.+|.+|..    .+++++|+..|+++++.+  ++.++..+|.++..    .+++++|.......            
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a------------  176 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKA------------  176 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------
Confidence            999999999999    999999999999999976  68899999999988    88888887663211            


Q ss_pred             HHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH----hhhhhhhHhhhhHHhcCCc
Q 024419          148 KSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL----LDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~----~~~~~~a~~~~~~~~~~~~  211 (268)
                         +...........+.++..    .+++++|+..|+++++..|.        +|..    .++.++|+..|++++.++|
T Consensus       177 ---~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          177 ---CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             ---HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ---HHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence               111122334455556666    78999999999999887764        3555    7899999999999999877


Q ss_pred             cc
Q 024419          212 AF  213 (268)
Q Consensus       212 ~~  213 (268)
                      ..
T Consensus       254 ~~  255 (273)
T 1ouv_A          254 KG  255 (273)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=1.2e-17  Score=132.46  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLH--------LVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      +.+++.+|.+++..|++++|+..|+++++.+|++   ..+++.+|.++..        +|++++|+..|++++..+|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            8899999999999999999999999999998865   5789999999999        9999999999999999999986


Q ss_pred             HHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHH
Q 024419           76 KGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        76 ~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~  124 (268)
                      .+.                 +.+|.+|...|++++|+..|+++++.+|+   .+.++..+|.++..+|.
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  200 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE  200 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence            665                 88999999999999999999999999998   46789999999877743

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=1.7e-17  Score=127.31  Aligned_cols=161  Identities=11%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHH
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR----------------KGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      .++..++..|.++...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|++++
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999                9999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH--HHHHHHHhhh
Q 024419          103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE--TMETAVKSWH  180 (268)
Q Consensus       103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~  180 (268)
                      +++|+++.++..+|.++...|++++|.....  ..+.           +.+.....+...|.++...+  ....+...+.
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~-----------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYE--KILQ-----------LEADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999999999976631  1111           22233334445555444333  3444556666


Q ss_pred             hhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          181 ETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       181 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      +++...|.         .+..+|++++|+..|++++.++|.
T Consensus       149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            65554443         223345555555555555555553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.78  E-value=6.6e-19  Score=131.53  Aligned_cols=129  Identities=12%  Similarity=0.027  Sum_probs=112.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            5677778999999999999999999999999999999999999999999999999999999999999999 887776666


Q ss_pred             HHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .+.. ..++..+|+..++++++.+|+++.++..+|.++...|++++|....
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5533 3344456899999999999999999999999999999999997663

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=3.4e-18  Score=120.58  Aligned_cols=100  Identities=11%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           32 QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        32 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      ++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q 024419          112 SRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       112 ~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +..+|.++..+|++++|...
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRA  103 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.77  E-value=3.8e-17  Score=113.77  Aligned_cols=117  Identities=23%  Similarity=0.453  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      .+..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      ...|++++|+..++++++.+|+++.++..++.++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=5.8e-18  Score=136.38  Aligned_cols=167  Identities=13%  Similarity=0.054  Sum_probs=138.8

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.+.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999988877888888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc--Cchhhh
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY--GAEECW  161 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  161 (268)
                      .+...++.++|+..|++++..+|+++.++..+|.++...|++++|.....  ..+.           ..+..  ......
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~--~~l~-----------~~p~~~~~~a~~~  260 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF--GHLR-----------XDLTAADGQTRXT  260 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCTTGGGGHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH--HHHh-----------cccccccchHHHH
Confidence            89999999999999999999999999999999999999999999976531  1111           11122  223344


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Q 024419          162 KHVFSFVVETMETAVKSWHETS  183 (268)
Q Consensus       162 ~~~~~~~~~~~~~A~~~~~~~~  183 (268)
                      .+.+....++.++|+..|++++
T Consensus       261 l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          261 FQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHH
Confidence            4444555566666666666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.3e-17  Score=118.73  Aligned_cols=117  Identities=30%  Similarity=0.449  Sum_probs=111.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      .|.++..++.+|..++..|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            35678999999999999999999999999999999998   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .+|.++...|++++|+..|+++++++|++..++..++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.76  E-value=2.8e-17  Score=115.51  Aligned_cols=120  Identities=25%  Similarity=0.381  Sum_probs=112.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK   76 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~   76 (268)
                      |..+..+..+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998877       89


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      +++.+|.++...|++++|+..|+++++..| ++.....++.+....+.
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 68888888888766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.76  E-value=3.1e-17  Score=115.57  Aligned_cols=113  Identities=15%  Similarity=0.164  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK   81 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l   81 (268)
                      ++++.+|..++..|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4678999999999999999999999999999998   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      |.++...|++++|+..|+++++.+|+++.+......+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999887766655543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.76  E-value=5.9e-17  Score=120.69  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=124.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++...|++++|+..++++++.+|+++.++..++.++...|++++|....
T Consensus       118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A          118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997663

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.76  E-value=3.3e-17  Score=136.52  Aligned_cols=127  Identities=23%  Similarity=0.384  Sum_probs=120.3

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTI   68 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   68 (268)
                      ..+..+..+|..++..|+|++|+..|+++++                .+|.+..++.++|.|+..+|++++|+.++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3467789999999999999999999999999                788889999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888877543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.75  E-value=1.6e-18  Score=149.26  Aligned_cols=130  Identities=30%  Similarity=0.481  Sum_probs=121.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .+..+.++..+|..++..|++++|++.|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhHHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE  132 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~  132 (268)
                      .++..+|++++|+..|+++++++|++..++..++.+  +...+++++|.+..
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~  133 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  133 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999988  77779999997764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.75  E-value=8.9e-17  Score=113.28  Aligned_cols=124  Identities=23%  Similarity=0.405  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      .++..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .|++++|+..+++++...|.++.++..++.++...|++++|...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  125 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY  125 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence            99999999999999999999999999999999999999998665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.75  E-value=4.9e-17  Score=129.27  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=120.4

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   70 (268)
                      .|..+.++..+|.++...|++++|+..|++++..        +|....++..+|.++...|++++|+..|++++.+    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999987        4666789999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        71 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                          +|....++..+|.++...|++++|+..+++++++        +|....++..+|.++...|++++|....
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                5777899999999999999999999999999999        7777889999999999999999997763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.75  E-value=1.7e-17  Score=133.91  Aligned_cols=188  Identities=13%  Similarity=-0.011  Sum_probs=140.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC---
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHL-VKLNKALADAETTISLNPQW---   74 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---   74 (268)
                      ..+.++..+|.++...|++++|+.+|++++++.|..      ..++.++|.+|... |++++|+.+|++++.+.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            347899999999999999999999999999998754      46899999999996 99999999999999998864   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                         ..++..+|.++..+|++++|+..|++++++.|++..       ++..+|.++...|++++|......  .+...+..
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--al~l~p~~  232 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE--GQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG--GGCC----
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhhCCCC
Confidence               567999999999999999999999999999998754       678999999999999999766421  12111111


Q ss_pred             HHHHHHhhhhcCchhhhHHHHH--HHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhH
Q 024419          145 DEFKSEMSEKYGAEECWKHVFS--FVVETMETAVKSWHETSKVDAKVYFLLDKEKTDT  200 (268)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~  200 (268)
                      .....      ...........  ...+.+++|+..|.+++.++|..-..+-+..+.+
T Consensus       233 ~~~~~------~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          233 ADSRE------SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             -----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             CCcHH------HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            10000      00000000000  1235688888888888888887555555555444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.74  E-value=4.7e-17  Score=136.10  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=150.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--   74 (268)
                      +..+.++..+|.++...|++++|+.++++++++.+..       +.++.++|.+|..+|++++|+..|++++.+.|..  
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            4567899999999999999999999999999985443       4689999999999999999999999999886543  


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419           75 ----EKGYFRKGCILEAMEQYDDALSAFQTALQ-----YN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus        75 ----~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                          ..++.++|.+|...|++++|+..|+++++     .+ |..+.++..+|.++...|++++|.......  +......
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~~~~  297 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG--MAYSQKA  297 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHc
Confidence                36899999999999999999999999999     46 888899999999999999999997764321  1111110


Q ss_pred             H--HHHHHhhhhcCchhhhHHHHHHHH---HHHHHHHHhhhhhhhchh----------HHHHHhhhhhhhHhhhhHHhcC
Q 024419          145 D--EFKSEMSEKYGAEECWKHVFSFVV---ETMETAVKSWHETSKVDA----------KVYFLLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       145 ~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~  209 (268)
                      .  ..... .       ...+.++...   ..+++|+..+++.. ..|          .+|...|++++|...+++++.+
T Consensus       298 ~~~~~~~~-~-------~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          298 GDVIYLSE-F-------EFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             TCHHHHHH-H-------HHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHH-H-------HHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            0  00000 0       0111111112   33677777776652 222          2678899999999999999988


Q ss_pred             Cccc
Q 024419          210 DKAF  213 (268)
Q Consensus       210 ~~~~  213 (268)
                      ....
T Consensus       369 ~~~i  372 (383)
T 3ulq_A          369 RQLI  372 (383)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            5443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.74  E-value=2.2e-17  Score=119.71  Aligned_cols=106  Identities=10%  Similarity=0.003  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN  105 (268)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  105 (268)
                      +-..|++++..+|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419          106 PQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       106 p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      |+++.++..+|.++...|++++|...
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~  111 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESG  111 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.74  E-value=3.4e-17  Score=143.97  Aligned_cols=127  Identities=11%  Similarity=0.083  Sum_probs=78.7

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.++.++..+|.++...|++++|++.|+++++.+|++..++.++|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   99 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH   99 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQE  130 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~  130 (268)
                      ++...|++++|++.|+++++++|++..++..++.++...   |++++|.+
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            666666666666666666666666666666666666555   55555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.73  E-value=1.6e-16  Score=121.80  Aligned_cols=125  Identities=21%  Similarity=0.259  Sum_probs=117.3

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      ..++..++.+|..++..|++++|+..|++++  +| ++.+++++|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            3566788999999999999999999999996  44 78999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHhHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSA----------------EVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++...|++++|+..|++++++.|++.                .++..+|.++...|++++|...
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  143 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ  143 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999999999999998877                9999999999999999999765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.73  E-value=1.5e-16  Score=139.98  Aligned_cols=113  Identities=13%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (268)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419          100 TALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       100 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ++++++|+++.++..+|.++...|++++|.+..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  114 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAY  114 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999997664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.72  E-value=2.7e-17  Score=137.44  Aligned_cols=225  Identities=14%  Similarity=0.084  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDP------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WE   75 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~   75 (268)
                      .++.+|..++..|++++|+..|++++++.+      ..+.++.++|.+|..+|++++|+..+++++.+.+.       .+
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            567899999999999999999999998743      34678999999999999999999999999987543       25


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .++..+|.++...|++++|++.|++++++.+.      ...++..+|.++...|++++|.....  ..+.....      
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~--~al~~~~~------  254 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSRE------  254 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHH------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHh------
Confidence            67889999999999999999999999987432      24688999999999999999977642  11111110      


Q ss_pred             HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------HHHHhhh---hhhhHhhhhHHhcCCc
Q 024419          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDK---EKTDTEKYAPIVNVDK  211 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~---~~~a~~~~~~~~~~~~  211 (268)
                      ...+.........+.++...+++++|+..+++++.+.+.               .+...++   ..+|+..++.......
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~  334 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY  334 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH
Confidence            011112334556677788889999999999999887543               1222333   4555555444211111


Q ss_pred             cccCccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419          212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVA  242 (268)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~  242 (268)
                      ........|.++...+++  |.+.|++++ ++.
T Consensus       335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al-~~~  366 (378)
T 3q15_A          335 IEACARSAAAVFESSCHFEQAAAFYRKVL-KAQ  366 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHH
Confidence            111112256667777777  999999998 653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.72  E-value=2.5e-16  Score=117.32  Aligned_cols=108  Identities=13%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCCHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA-FLHLVKL--NKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++  ++|+..+++++..+|+++.+++.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            44555666666666666666666666666666666666666666666 5566665  66666666666666666666666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (268)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  111 (268)
                      +|.++...|++++|+..|+++++++|+++..
T Consensus       121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            6666666666666666666666666655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.72  E-value=3.9e-17  Score=111.63  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~   80 (268)
                      .|.++..+..+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-cCHHHHHHHHHHHHhhCCCCH
Q 024419           81 KGCILEAM-EQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        81 la~~~~~~-~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      +|.++... |++++|++.+++++..+|+++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.72  E-value=5.4e-17  Score=116.84  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=90.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----------NKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      -+.+.|++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++|+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3456799999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cc-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           88 ME-----------QYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        88 ~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      +|           ++++|+++|+++++++|++......+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            85           899999999999999999976655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.72  E-value=5.8e-16  Score=124.98  Aligned_cols=227  Identities=14%  Similarity=0.091  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +-.............|.+ ++|+..+.++|.++|.+..+|+.++.++..++  .+++++..+.+++..+|++..+|..++
T Consensus        31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~  110 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ  110 (306)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            334555666666777777 68999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHH----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419           83 CIL----EAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--RAQEVENIRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        83 ~~~----~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      .++    ...   +++++++..+.++++.+|.|..+|...+.+....+.++  ++.+..  ...+..           ..
T Consensus       111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~--~~~i~~-----------d~  177 (306)
T 3dra_A          111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV--DKVIDT-----------DL  177 (306)
T ss_dssp             HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH--HHHHHH-----------CT
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH--HHHHHh-----------CC
Confidence            999    777   78999999999999999999999999999998888766  443331  111111           11


Q ss_pred             hcCchhhhHHHHHHHHH------HHHHHHHhhhhhhhchhH----------HHHHhhhhhh-hHhhhhHHhcCCcccc-C
Q 024419          154 KYGAEECWKHVFSFVVE------TMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVDKAFE-S  215 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~~~------~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~-a~~~~~~~~~~~~~~~-~  215 (268)
                      ....++..++.+....+      .++++++.+.+++..+|.          ++...|+... ....+.+++.+++... +
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s  257 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS  257 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence            11222233333222222      388999999999999997          2334444333 4445566666541100 0


Q ss_pred             cc---chhHHHHHHHHH--HHHHHHHHhhh-hCCCCc
Q 024419          216 PH---THGSCFQFLRQY--ADDSFSSAACL-VAPKSI  246 (268)
Q Consensus       216 ~~---~~~~~~~~~~~~--a~~~~~ka~~~-~~p~~~  246 (268)
                      ..   ..+.++...+.+  |.+.|++++ . +||-..
T Consensus       258 ~~al~~la~~~~~~~~~~~A~~~~~~l~-~~~Dpir~  293 (306)
T 3dra_A          258 SFALETLAKIYTQQKKYNESRTVYDLLK-SKYNPIRS  293 (306)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCGGGH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHH-hccChHHH
Confidence            01   133333334444  999999999 6 899753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=1.4e-16  Score=114.54  Aligned_cols=105  Identities=9%  Similarity=-0.008  Sum_probs=98.2

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        28 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419          108 SAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ++.++..+|.++...|++++|....
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~  109 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGF  109 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999997663

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-16  Score=127.72  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=119.1

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN---   71 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---   71 (268)
                      .|..+.++..+|.++...|++++|+.++++++..        +|....++..+|.++...|++++|+..+++++.+.   
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            5677889999999999999999999999999987        45667899999999999999999999999999884   


Q ss_pred             -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           72 -----PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        72 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                           |....++..+|.++...|++++|+..|++++++        +|....++..++.++...|++++|....
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  218 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY  218 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                 556788999999999999999999999999998        7777889999999999999999997764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.70  E-value=4.2e-17  Score=129.64  Aligned_cols=166  Identities=11%  Similarity=0.067  Sum_probs=129.0

Q ss_pred             HHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHH
Q 024419           18 FKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRK   81 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l   81 (268)
                      ...|++++|+.+|+++++.        +|..+.++..+|.++...|++++|+..+++++.+        +|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567888888888888874        3667889999999999999999999999999987        46668899999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      |.++...|++++|+..|++++.+        +|....++..+|.++...|++++|......  .+......   ...-..
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~---~~~~~~  166 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR--ALEIYATR---LGPDDP  166 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH--HHHHHHHH---SCTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHh---cCCCCH
Confidence            99999999999999999999998        577788999999999999999999776421  11110000   000011


Q ss_pred             hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      .........+.++...+++++|+..+.+++.+.+.
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            12234455666778889999999999999887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.70  E-value=1.7e-17  Score=115.26  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             HcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           19 KAGNYLKAAALYTQAIKQ---DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      ..|++++|+..|+++++.   +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHH
Q 024419           96 SAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~~~~~l  115 (268)
                      ..++++++.+|+++.+....
T Consensus        82 ~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHhCCCcHHHHHHH
Confidence            99999999999998765433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.70  E-value=1.9e-14  Score=116.92  Aligned_cols=181  Identities=7%  Similarity=-0.027  Sum_probs=141.3

Q ss_pred             CchHhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHh
Q 024419            2 AAEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTIS   69 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~   69 (268)
                      .+|++..+|..++.++...+.          +++++.++..++..+|++..+|.+++.++...+.  +++++.++.++++
T Consensus        59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~  138 (331)
T 3dss_A           59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  138 (331)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence            478999999999999987766          7899999999999999999999999999999994  8999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------------HHHHHhHHHHhh
Q 024419           70 LNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQSAEVSRKIKRVSQLA--------------KDKKRAQEVENI  134 (268)
Q Consensus        70 ~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~  134 (268)
                      .+|.|..+|...+.+....|. ++++++++.++++.+|.|..+|...+.+....              +.++++.+..  
T Consensus       139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~--  216 (331)
T 3dss_A          139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV--  216 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHH--
T ss_pred             hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHH--
Confidence            999999999999999999999 69999999999999999999999999998877              4555554432  


Q ss_pred             hhhHHHhhhHHHHH---HHhhh-hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          135 RSNVDMVQHLDEFK---SEMSE-KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       135 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ...+...|......   ..+.. ..+....  .  ....+.++++++.+.+.+++.|+
T Consensus       217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~--~--~~~~~~l~~el~~~~elle~~pd  270 (331)
T 3dss_A          217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCEL--S--VEKSTVLQSELESCKELQELEPE  270 (331)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHSSSCGGGC--C--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccCcccc--c--hHHHHHHHHHHHHHHHHHhhCcc
Confidence            22222222221111   11111 1111000  0  22356788888888888888887

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=6.1e-16  Score=119.99  Aligned_cols=127  Identities=12%  Similarity=0.150  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHH------------------cCChHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLH------------------LVKLNKALADA   64 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~   64 (268)
                      ...+++.+|.+++..|++++|+..|+++++.+|++..   +++.+|.++..                  .|++++|+..|
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            3578999999999999999999999999999999874   89999999986                  57899999999


Q ss_pred             HHHHhhCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHH
Q 024419           65 ETTISLNPQWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKD  124 (268)
Q Consensus        65 ~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~  124 (268)
                      +++++.+|++..++                 +.+|.++...|++++|+..|+++++..|+++   .++..++.++..+|+
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  199 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM  199 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence            99999999987554                 6789999999999999999999999999986   679999999999999


Q ss_pred             HHHhHHHH
Q 024419          125 KKRAQEVE  132 (268)
Q Consensus       125 ~~~a~~~~  132 (268)
                      +++|....
T Consensus       200 ~~~A~~~~  207 (225)
T 2yhc_A          200 NAQAEKVA  207 (225)
T ss_dssp             HHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99997663

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.69  E-value=1.3e-15  Score=122.90  Aligned_cols=198  Identities=8%  Similarity=-0.003  Sum_probs=150.4

Q ss_pred             chHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHc---CChHHHHHHHHHHHhhCCC
Q 024419            3 AEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAF----LHL---VKLNKALADAETTISLNPQ   73 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~   73 (268)
                      +|++..++..+|.++...+  ++++++..+..++..+|++..+|+.++.++    ...   +++++++..+.++++.+|+
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk  142 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK  142 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence            6889999999999999999  999999999999999999999999999999    777   8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH------HHHhHHHHhhhhhHHHhhhHH
Q 024419           74 WEKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD------KKRAQEVENIRSNVDMVQHLD  145 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~  145 (268)
                      +..+|..++.++...|.++  ++++.+.++++.+|.|..+|...+.+....+.      ++++.+..  ...+...    
T Consensus       143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~--~~aI~~~----  216 (306)
T 3dra_A          143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV--KDKIVKC----  216 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH--HHHHHHC----
T ss_pred             CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH--HHHHHhC----
Confidence            9999999999999999998  99999999999999999999999998877665      44443331  1111111    


Q ss_pred             HHHHHhhhhcCchhhhHHHHHHHHHHHHH-HHHhhhhhhhch-------------hHHHHHhhhhhhhHhhhhHHhc-CC
Q 024419          146 EFKSEMSEKYGAEECWKHVFSFVVETMET-AVKSWHETSKVD-------------AKVYFLLDKEKTDTEKYAPIVN-VD  210 (268)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~-~~  210 (268)
                             +....++.+++.+....++... ......+.+.+.             .+++...|+.++|++.|+.+.. ++
T Consensus       217 -------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D  289 (306)
T 3dra_A          217 -------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN  289 (306)
T ss_dssp             -------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             -------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence                   1112222222222222222111 222333333322             2256677899999999999986 68


Q ss_pred             ccc
Q 024419          211 KAF  213 (268)
Q Consensus       211 ~~~  213 (268)
                      |..
T Consensus       290 pir  292 (306)
T 3dra_A          290 PIR  292 (306)
T ss_dssp             GGG
T ss_pred             hHH
Confidence            853

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.69  E-value=5.4e-17  Score=133.68  Aligned_cols=125  Identities=21%  Similarity=0.303  Sum_probs=96.5

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHcCChHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      +..+..+..+|..++..|+|++|+..|++++...|.+.                 .+++++|.|+..+|++++|+..|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56788899999999999999999999999999999877                 4999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHh
Q 024419           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRA  128 (268)
Q Consensus        67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~a  128 (268)
                      ++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+.... +..+.+
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999885544 333444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.68  E-value=8.8e-16  Score=114.34  Aligned_cols=116  Identities=12%  Similarity=0.121  Sum_probs=106.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHccCH--H
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LEAMEQY--D   92 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~   92 (268)
                      .+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            356788999999999999999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +|+..|+++++.+|+++.++..+|.++...|++++|...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  137 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL  137 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHH
Confidence            999999999999999999999999999999999999765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.67  E-value=4.1e-16  Score=109.98  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-------H
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV-------S  112 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-------~  112 (268)
                      .+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++...       +
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999987544       4


Q ss_pred             HHHHHHHHHHHHHHHhH
Q 024419          113 RKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus       113 ~~l~~~~~~~~~~~~a~  129 (268)
                      ..+|.++..++++++|+
T Consensus        87 ~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            44444444444444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.67  E-value=2.5e-14  Score=116.21  Aligned_cols=217  Identities=13%  Similarity=0.108  Sum_probs=159.8

Q ss_pred             HHHHHHcCCHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           14 GNEFFKAGNYL-KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus        14 g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .......|++. +|+..+.+++..+|.+..+|+.++.+...++.          +++++..+..++..+|++..+|..++
T Consensus        36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~  115 (331)
T 3dss_A           36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC  115 (331)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33445678775 89999999999999999999999999998876          68999999999999999999999999


Q ss_pred             HHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-HHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419           83 CILEAMEQ--YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (268)
Q Consensus        83 ~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (268)
                      .++...++  +++++..+.++++.+|.|..+|...+.+....+. ++++.+..  ...+.           ..+....++
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~--~~~I~-----------~~p~N~SAW  182 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT--DSLIT-----------RNFSNYSSW  182 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHH-----------HCSCCHHHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH--HHHHH-----------HCCCCHHHH
Confidence            99999994  9999999999999999999999999999888776 45554331  11111           111122222


Q ss_pred             hhHHHHHHHH--------------HHHHHHHHhhhhhhhchhH---HHH----H--------------hhhhhhhHhhhh
Q 024419          160 CWKHVFSFVV--------------ETMETAVKSWHETSKVDAK---VYF----L--------------LDKEKTDTEKYA  204 (268)
Q Consensus       160 ~~~~~~~~~~--------------~~~~~A~~~~~~~~~~~~~---~~~----~--------------~~~~~~a~~~~~  204 (268)
                      ..++.+....              +.++++++.+.+++..+|.   +++    .              ++.++++++.+.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            3333322222              6789999999999999997   111    1              145678888888


Q ss_pred             HHhcCCccccCccc-hhHHHHHH-----HHH--HHHHHHHHhhhhCCCCc
Q 024419          205 PIVNVDKAFESPHT-HGSCFQFL-----RQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       205 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~--a~~~~~ka~~~~~p~~~  246 (268)
                      .+++++|+.  .+. .+.+....     +..  ....+.+.+ ++||...
T Consensus       263 elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~Dp~r~  309 (331)
T 3dss_A          263 ELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRA  309 (331)
T ss_dssp             HHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH-HHCGGGH
T ss_pred             HHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHH-HhCcchh
Confidence            888888865  121 11111111     112  677888888 8898753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.67  E-value=6.2e-16  Score=115.25  Aligned_cols=128  Identities=13%  Similarity=0.054  Sum_probs=114.5

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL-HLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+..+++++..+|+++.+++.+
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            588899999999999999999999999999999999 8877776665533 33455568999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      |.++...|++++|+..|+++++.+|+.  +.++..++.++...|+.++|...
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            999999999999999999999999976  66999999999999999888655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.67  E-value=1.5e-14  Score=126.10  Aligned_cols=208  Identities=11%  Similarity=0.024  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKLN-------KALADAETTIS-LNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~   88 (268)
                      ..|+..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|+++++ ++|++..+|..+|.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79987       99999999997 8999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH-
Q 024419           89 EQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS-  166 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (268)
                      |++++|+..|+++++++|.++ .+|..++.+....|+.++|..+....  +...+           .........+.+. 
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A--l~~~~-----------~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA--REDAR-----------TRHHVYVTAALMEY  401 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCTT-----------CCTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH--HhccC-----------CchHHHHHHHHHHH
Confidence            999999999999999999986 69999999999999999987663211  11100           0011111222222 


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccch---hHHHHHHHHH--
Q 024419          167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTH---GSCFQFLRQY--  229 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~--  229 (268)
                      ...+++++|...|+++++..|+          .+...|+.++|...|++++...|....  ....   ..+....|..  
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~  481 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  481 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            2367889999999999999886          244668999999999999987553210  0011   1122222334  


Q ss_pred             HHHHHHHHhhhhCCCC
Q 024419          230 ADDSFSSAACLVAPKS  245 (268)
Q Consensus       230 a~~~~~ka~~~~~p~~  245 (268)
                      +...+.+++ +..|++
T Consensus       482 ~~~~~~r~~-~~~p~~  496 (530)
T 2ooe_A          482 ILKVEKRRF-TAFREE  496 (530)
T ss_dssp             HHHHHHHHH-HHTHHH
T ss_pred             HHHHHHHHH-HHCchh
Confidence            888888999 888853

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=2.4e-14  Score=114.75  Aligned_cols=191  Identities=12%  Similarity=0.056  Sum_probs=129.8

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (268)
Q Consensus        38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  117 (268)
                      |.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HHHH
Q 024419          118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFL  192 (268)
Q Consensus       118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~  192 (268)
                      ++...|++++|.....  ..+...+       .....+... .+................   ....-++.     ....
T Consensus        81 ~~~~~g~~~~A~~~~~--~al~l~p-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~l~  147 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQ--RAYSLAK-------EQRLNFGDD-IPSALRIAKKKRWNSIEE---RRIHQESELHSYLTRLI  147 (281)
T ss_dssp             HHHHTTCHHHHHHHHH--HHHHHHH-------HTTCCCCSH-HHHHHHHHHHHHHHHHHH---TCCCCCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH--HHHHhCc-------cchhhHHHH-HHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Confidence            9999999999976632  1111111       111111111 111110111111111111   11111111     1224


Q ss_pred             hhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHH-HHH--HHHHHHHHhhhhC
Q 024419          193 LDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL-RQY--ADDSFSSAACLVA  242 (268)
Q Consensus       193 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--a~~~~~ka~~~~~  242 (268)
                      .|+.++|++.++.++.++|....... ....+... +.+  +.+.|.++. +..
T Consensus       148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~-~~~  200 (281)
T 2c2l_A          148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD-EKR  200 (281)
T ss_dssp             HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS-CTT
T ss_pred             HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-ccc
Confidence            68888999999999998875421111 22233333 344  888898888 643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.65  E-value=1.9e-16  Score=130.37  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=124.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCI   84 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~   84 (268)
                      .+++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|++               ..++.++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999999999999999999999999               6999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      +..+|++++|+..|+++++++|+++.++..+|.++..+|++++|.....  ..+.           +.+.........+.
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~--~al~-----------l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ--KVLQ-----------LYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCSSCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------HCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999976631  1111           22222334455555


Q ss_pred             HHHHHHHHHHH-HHhhhhhh
Q 024419          165 FSFVVETMETA-VKSWHETS  183 (268)
Q Consensus       165 ~~~~~~~~~~A-~~~~~~~~  183 (268)
                      +...++++++| ...|.+.+
T Consensus       273 ~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66667777776 33444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=5.6e-15  Score=103.67  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=90.6

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (268)
Q Consensus        38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  117 (268)
                      |.++..+..+|.+++..|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHH
Q 024419          118 VSQLAKDKKRAQEVE  132 (268)
Q Consensus       118 ~~~~~~~~~~a~~~~  132 (268)
                      ++...|++++|....
T Consensus        81 ~~~~~~~~~~A~~~~   95 (126)
T 3upv_A           81 AQIAVKEYASALETL   95 (126)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHH
Confidence            999999999997653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.64  E-value=7.4e-15  Score=122.59  Aligned_cols=198  Identities=10%  Similarity=0.005  Sum_probs=146.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--   73 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--   73 (268)
                      .|..+.++..+|.++...|++++|+.+++++++..+.       .+.++.++|.+|..+|++++|+..|++++.+.+.  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            3567889999999999999999999999999987543       2467889999999999999999999999987431  


Q ss_pred             ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH---h
Q 024419           74 ----WEKGYFRKGCILEAMEQYDDALSAFQTALQ-----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM---V  141 (268)
Q Consensus        74 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~  141 (268)
                          ...++.++|.++...|++++|+..|+++++     .+|..+.++..+|.++...|++++|.........+..   .
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence                256899999999999999999999999999     7888899999999999999999999776421111100   0


Q ss_pred             hhH---HHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---------hHHHHHhhhhhhhHhhhhHHhcC
Q 024419          142 QHL---DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       142 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~  209 (268)
                      +..   ......+....+.           ...+.+|+..+++.....         ..+|...|++++|...|++++.+
T Consensus       297 ~~~~~~~~~l~~ly~~~~~-----------~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          297 KFYKELFLFLQAVYKETVD-----------ERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             SCHHHHHHHHHHHHSSSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            000   0011111111111           133666666665532111         12677889999999999998876


Q ss_pred             Cc
Q 024419          210 DK  211 (268)
Q Consensus       210 ~~  211 (268)
                      ..
T Consensus       366 ~~  367 (378)
T 3q15_A          366 QE  367 (378)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=6.6e-15  Score=112.66  Aligned_cols=104  Identities=13%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE----------   75 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------   75 (268)
                      ++.+++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++...|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            5679999999999999999999999999999999999999999999999999999999999999888876          


Q ss_pred             ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           76 ------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        76 ------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                            .+++.+|.++...|++++|+..|+++++++|++.
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                  9999999999999999999999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=2.6e-14  Score=115.20  Aligned_cols=176  Identities=11%  Similarity=0.008  Sum_probs=134.6

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---   74 (268)
                      |.....+...+..++..|+|++|++.+.++++..|...      ..+..+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            45567788999999999999999999999999988754      346778999999999999999999999876543   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTAL---QYNPQSA----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  144 (268)
                         ..++..+|.+|...|++++|+..|++++   +..|++.    .++..+|.++..+|++++|......  .+..... 
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k--al~~~~~-  228 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK--AIEISCR-  228 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH--HHHHHHh-
Confidence               5689999999999999999999999999   5567653    6899999999999999999776421  1111100 


Q ss_pred             HHHHHHhhhhcCchhhhHHHHHHHHHHHHHH-HHhhhhhhhch
Q 024419          145 DEFKSEMSEKYGAEECWKHVFSFVVETMETA-VKSWHETSKVD  186 (268)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~  186 (268)
                          .......+..+...|..+..++++++| ..++.+++.+.
T Consensus       229 ----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          229 ----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             ----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                000011133445566666777777777 66677776544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.63  E-value=1.6e-15  Score=122.13  Aligned_cols=129  Identities=9%  Similarity=-0.011  Sum_probs=121.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..+++++..+|+....+...+..+...++.++|+..+++++..+|+++.+++.+|
T Consensus       147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            57889999999999999999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      .++...|++++|+..|.++++.+|++  ..++..++.++...|+.++|...
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            99999999999999999999999999  89999999999999988877544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.62  E-value=2.8e-15  Score=121.72  Aligned_cols=172  Identities=15%  Similarity=0.104  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WE   75 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~   75 (268)
                      ..+...|.++...|++++|+..|.+++.+.+..      ..++.++|.+|..+|++++|+.+|++++.+.+.      ..
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345556788999999999999999999986543      568899999999999999999999999988543      24


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      .++..+|.+|.. |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+....  ..+...+....   
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~---  190 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ--KEKSMYKEMEN---  190 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHcCC---
Confidence            678899999988 99999999999999988754      5678899999999999999976632  11111111000   


Q ss_pred             HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                        ...........+..+...+++++|+..|++++ ++|.
T Consensus       191 --~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          191 --YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             --hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence              00001122333444444566666666666666 6554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=1.7e-14  Score=125.67  Aligned_cols=197  Identities=10%  Similarity=-0.029  Sum_probs=152.9

Q ss_pred             chHhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFK-------AGNYL-------KAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      .|.++..|+..|..+..       .|+++       +|+..|+++++ .+|++..+|..+|.++...|++++|+..|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            47788999999999986       79987       99999999997 89999999999999999999999999999999


Q ss_pred             HhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHHHHHHHhHHHHhhhhhHHHhhhHH
Q 024419           68 ISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS-QLAKDKKRAQEVENIRSNVDMVQHLD  145 (268)
Q Consensus        68 l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~  145 (268)
                      +.++|.++ .+|..+|.++...|++++|+..|+++++..|.+...+...+.+. ...|+.++|..+..  ..+...    
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e--~al~~~----  421 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLKKY----  421 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHH----
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHH--HHHHHC----
Confidence            99999985 69999999999999999999999999999998888777666553 34667777766532  111111    


Q ss_pred             HHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---hH----HH-------HHhhhhhhhHhhhhHHhcCCc
Q 024419          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---AK----VY-------FLLDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~-------~~~~~~~~a~~~~~~~~~~~~  211 (268)
                             +.....+...+.+....++.++|...|++++...   |.    ++       ...|+.+.+...+.+++...|
T Consensus       422 -------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          422 -------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             -------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             -------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                   1112222333334445688888999999888753   32    22       244777788888888887766


Q ss_pred             c
Q 024419          212 A  212 (268)
Q Consensus       212 ~  212 (268)
                      .
T Consensus       495 ~  495 (530)
T 2ooe_A          495 E  495 (530)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.61  E-value=7.5e-14  Score=120.51  Aligned_cols=232  Identities=8%  Similarity=0.032  Sum_probs=154.4

Q ss_pred             hHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 024419            4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      +.++++.+.+|..+..    .+++++|+..|+++.+.  +++.+++.+|.+|..    .+++++|+.+|+++...  .++
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  111 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP  111 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            4578889999999998    89999999999999876  678999999999999    99999999999999875  578


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhh---HHHhhhH
Q 024419           76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSN---VDMVQHL  144 (268)
Q Consensus        76 ~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~  144 (268)
                      .+++.+|.+|..    .+++++|+..|+++.+.  +++.++..+|.++..    .+++++|.........   ......+
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L  189 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999998    88999999999999765  688999999999876    5677777655321100   0000001


Q ss_pred             ------------------HHHHHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH--
Q 024419          145 ------------------DEFKSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL--  192 (268)
Q Consensus       145 ------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~--  192 (268)
                                        ..+...............+.++..    .+++++|+..|++++...+.        +|..  
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~  269 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL  269 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence                              111111111111112222333332    45667777777776554332        2333  


Q ss_pred             --hhhhhhhHhhhhHHhcCCccccCccchhHHHHHH-----HHH--HHHHHHHHhhhhCC
Q 024419          193 --LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL-----RQY--ADDSFSSAACLVAP  243 (268)
Q Consensus       193 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--a~~~~~ka~~~~~p  243 (268)
                        .++..+|+..|+++.+.+... .....+.++...     +++  |...|++|+ +..+
T Consensus       270 ~~~~d~~~A~~~~~~a~~~~~~~-a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~~  327 (490)
T 2xm6_A          270 AGAKEPLKALEWYRKSAEQGNSD-GQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQGD  327 (490)
T ss_dssp             TSSCCHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTTC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcCC
Confidence              566777777777777653211 011244444443     444  777777777 6543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=2.7e-14  Score=100.35  Aligned_cols=106  Identities=23%  Similarity=0.459  Sum_probs=101.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.+...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      .++...|++++|+..+++++..+|++
T Consensus       111 ~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          111 NAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=2.7e-14  Score=99.63  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      ..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHH
Q 024419          122 AKDKKRAQEVE  132 (268)
Q Consensus       122 ~~~~~~a~~~~  132 (268)
                      .|++++|....
T Consensus        98 ~g~~~~A~~~~  108 (121)
T 1hxi_A           98 EHNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99999997663

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.60  E-value=3.4e-14  Score=98.01  Aligned_cols=101  Identities=12%  Similarity=0.167  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHHHH
Q 024419          104 YNPQ--SAEVSRKIKRVSQLAKD  124 (268)
Q Consensus       104 ~~p~--~~~~~~~l~~~~~~~~~  124 (268)
                      ++|.  +......+......++.
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            9884  44555555555444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=5.2e-14  Score=103.45  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=91.3

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      ++.++..++.+|.+++..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHH
Q 024419          117 RVSQLAKDKKRAQEV  131 (268)
Q Consensus       117 ~~~~~~~~~~~a~~~  131 (268)
                      .++...|++++|...
T Consensus        87 ~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           87 LARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHccCHHHHHHH
Confidence            999999999999766

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.60  E-value=1.3e-13  Score=119.01  Aligned_cols=229  Identities=11%  Similarity=0.035  Sum_probs=166.8

Q ss_pred             HhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHH
Q 024419            5 AEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEK   76 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~   76 (268)
                      .++.+++.+|..+..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+..|+++...  .++.
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            457788999999999    99999999999999875  588999999999999    88999999999999875  5789


Q ss_pred             HHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhh---HHHh----
Q 024419           77 GYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSN---VDMV----  141 (268)
Q Consensus        77 ~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~----  141 (268)
                      +++.+|.+|..    .+++++|+..|+++++.  +++.++..+|.++..    .+++++|.........   ....    
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  226 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA  226 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999998    88999999999999876  689999999999887    6777777665331110   0000    


Q ss_pred             --------------hhHHHHHHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchh-H-------HHHHh--
Q 024419          142 --------------QHLDEFKSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDA-K-------VYFLL--  193 (268)
Q Consensus       142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~-~-------~~~~~--  193 (268)
                                    .....+...+...........+.++..    .+++++|+..|+++.+... .       +|...  
T Consensus       227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~  306 (490)
T 2xm6_A          227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAE  306 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence                          111111111222222233444555554    6789999999999876543 2       33343  


Q ss_pred             ---hhhhhhHhhhhHHhcCCccccCccchhHHHHHH---HHH--HHHHHHHHhhhh
Q 024419          194 ---DKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL---RQY--ADDSFSSAACLV  241 (268)
Q Consensus       194 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--a~~~~~ka~~~~  241 (268)
                         ++.++|+..|+++++.++.. .....|.++...   .++  |...|++|+ +.
T Consensus       307 g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-~~  360 (490)
T 2xm6_A          307 GVAKNREQAISWYTKSAEQGDAT-AQANLGAIYFRLGSEEEHKKAVEWFRKAA-AK  360 (490)
T ss_dssp             TBCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HT
T ss_pred             CCcCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCcccHHHHHHHHHHHH-HC
Confidence               68999999999999875432 112255555552   256  999999999 76

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.60  E-value=9e-16  Score=104.96  Aligned_cols=95  Identities=24%  Similarity=0.334  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYF   79 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~   79 (268)
                      ++.++..+|..++..|++++|+..|+++++.+|+++.++.++|.|+..+|++++|+..|++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467788888888888888888888888888888888888888888888888888888888888888887      77888


Q ss_pred             HHHHHHHHccCHHHHHHHHHH
Q 024419           80 RKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~  100 (268)
                      .+|.++...|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888877776655544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.59  E-value=2.9e-14  Score=109.47  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=110.6

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      ..++.+++.+|..+...+++++|+..|+++++.  .++.+++++|.+|.. +    ++++|+.+|++++.  +.++.+++
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~   89 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI   89 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence            357889999999999999999999999999875  689999999999998 7    99999999999965  67899999


Q ss_pred             HHHHHHHH----ccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHHHHhHHH
Q 024419           80 RKGCILEA----MEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQL----AKDKKRAQEV  131 (268)
Q Consensus        80 ~la~~~~~----~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~  131 (268)
                      .+|.+|..    .+++++|+..|+++++..|  +++.++..||.++..    .+++++|..+
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            99999998    8999999999999999988  459999999999987    5667777655

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.59  E-value=1.8e-14  Score=119.82  Aligned_cols=223  Identities=13%  Similarity=0.046  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CC
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLN--------PQ   73 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~   73 (268)
                      .++..+|..+...|++++|+..+++++...|...      .++.++|.++...|++++|+..+++++.+.        |.
T Consensus        54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            3556667777777777777777777776654332      235667777777777777777777777653        22


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK  148 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (268)
                      ...++..+|.++...|++++|+..+++++.+.|..     ..++..++.++...|++++|.........+          
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~----------  203 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL----------  203 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence            34556667777777777777777777777766542     345666777777777777765543211000          


Q ss_pred             HHhhhhcCch--h-----hhHHHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHh
Q 024419          149 SEMSEKYGAE--E-----CWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIV  207 (268)
Q Consensus       149 ~~~~~~~~~~--~-----~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~  207 (268)
                         ....+..  .     .....+....+++++|...+.+++...|.              ++...|+..+|...++.++
T Consensus       204 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          204 ---LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             ---HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               0000100  0     01122344567888888888877655431              4556788899999998888


Q ss_pred             cCCcccc-------CccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          208 NVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       208 ~~~~~~~-------~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      ...+...       .....+.++...|++  |...+++|+ .+.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al-~~~~~  325 (373)
T 1hz4_A          281 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL-KLANR  325 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHhcc
Confidence            7643321       011135555566666  888899988 76654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=5.6e-15  Score=129.40  Aligned_cols=120  Identities=5%  Similarity=-0.032  Sum_probs=115.9

Q ss_pred             chHhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh
Q 024419            3 AEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISL   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~   70 (268)
                      +|++..+|..++.++...|+          +++|++.++++++.+|++..+|.++++++..++  +++++++.+.+++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            68899999999999999988          999999999999999999999999999999999  779999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           71 NPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      +|++..+|..++.+....| .++++++++.++++.+|.+..+|...+.++..+
T Consensus       139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999999999999 999999999999999999999999999998875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.59  E-value=1.6e-13  Score=113.96  Aligned_cols=230  Identities=12%  Similarity=0.024  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------   74 (268)
                      .++....+|..+...|++++|+..+++++...|.+.     .++..+|.++...|++++|+..+++++.+.|..      
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            356778899999999999999999999999887653     368899999999999999999999999986643      


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHH
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  146 (268)
                      ..++..+|.++...|++++|+..+++++++.        |....++..++.++...|++++|.....  ..+...+... 
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~-  169 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR--SGIEVLSSYQ-  169 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHTTTSC-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHhhccC-
Confidence            2447889999999999999999999999875        3345678889999999999999977632  1111111100 


Q ss_pred             HHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcC
Q 024419          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNV  209 (268)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~  209 (268)
                           ...........+.+....+++++|...+.+++.+.+.                 ++...|+..+|...++.++..
T Consensus       170 -----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          170 -----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             -----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             -----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence                 0001122344555677788888888888887654211                 244678999999999999887


Q ss_pred             CccccCc-----cchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419          210 DKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPK  244 (268)
Q Consensus       210 ~~~~~~~-----~~~~~~~~~~~~~--a~~~~~ka~~~~~p~  244 (268)
                      .+.....     ...+..+...+++  |...+++++ ...+.
T Consensus       245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~  285 (373)
T 1hz4_A          245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN-ENARS  285 (373)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHh
Confidence            5432100     1234455555666  888899888 66543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.9e-14  Score=126.08  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=130.2

Q ss_pred             HHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           12 DKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus        12 ~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      .........|++ ++|++.+++++..+|++..+|+.++.++..+|+          +++++..+.++++.+|++..+|..
T Consensus        33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h  112 (567)
T 1dce_A           33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH  112 (567)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            334445566766 688999999999999999999999999999998          999999999999999999999999


Q ss_pred             HHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419           81 KGCILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA  157 (268)
Q Consensus        81 la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
                      ++.++...+  +++++++.+.++++++|.|..+|...+.+....+ .++++.+...  ..+...+           ....
T Consensus       113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~--~~I~~~p-----------~n~s  179 (567)
T 1dce_A          113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD--SLITRNF-----------SNYS  179 (567)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH--TTTTTTC-----------CCHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH--HHHHHCC-----------CCcc
Confidence            999999999  7799999999999999999999999999998887 6666654421  1111111           1111


Q ss_pred             hhhhHHHHHHH--------------HHHHHHHHHhhhhhhhchhH
Q 024419          158 EECWKHVFSFV--------------VETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       158 ~~~~~~~~~~~--------------~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ++..++.+...              .+.++++++.+.+++.++|.
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~  224 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN  224 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence            22222222222              37788899999999988887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=4.7e-14  Score=100.09  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      ..+|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHH
Q 024419          115 IKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       115 l~~~~~~~~~~~~a~~~  131 (268)
                      +|.++...|++++|...
T Consensus        83 l~~~~~~~~~~~~A~~~   99 (137)
T 3q49_B           83 LGQCQLEMESYDEAIAN   99 (137)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            99999999999999765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.58  E-value=5.5e-14  Score=92.36  Aligned_cols=86  Identities=20%  Similarity=0.348  Sum_probs=51.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +|.++..++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++.++|+++.++..+|
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHc
Q 024419           83 CILEAM   88 (268)
Q Consensus        83 ~~~~~~   88 (268)
                      .++...
T Consensus        85 ~~~~~~   90 (91)
T 1na3_A           85 NAKQKQ   90 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=1.8e-13  Score=100.12  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=105.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh--hhHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419          120 QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE--CWKHVFSFVVETMETAVKSWHETSKV  185 (268)
Q Consensus       120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~  185 (268)
                      ...|++++|.....  ..+...+.           .....  ..........+++++|+..+.+...+
T Consensus        92 ~~~~~~~~A~~~~~--~a~~~~p~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           92 MALGKFRAALRDYE--TVVKVKPH-----------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHTTCHHHHHHHHH--HHHHHSTT-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHH--HHHHhCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            99999999976632  11111111           11111  12222344567777777777765543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.56  E-value=7.1e-15  Score=111.52  Aligned_cols=122  Identities=9%  Similarity=0.049  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--------------
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE--------------   75 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------------   75 (268)
                      ....+......|++++|.+.+.......+..+..+..+|.+++..|++++|+..|++++.+.|.++              
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A            7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            334455667778888888888887777777889999999999999999999999999999999887              


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        76 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                        .++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|...
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  144 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN  144 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence              89999999999999999999999999999999999999999999999999999665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.56  E-value=1.3e-13  Score=111.16  Aligned_cols=175  Identities=11%  Similarity=0.021  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHLVKLNKALADAETTISLNPQW-----   74 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   74 (268)
                      ....+...+..++..|+|++|+..++++++..+.++.      .+..+|.++...+++++|+..|++++.+.+..     
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  153 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            3455667789999999999999999999998877654      34468999999999999999999999975442     


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHH
Q 024419           75 -EKGYFRKGCILEAMEQYDDALSAFQTALQY-------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (268)
Q Consensus        75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  146 (268)
                       ..++..+|.+|...|++++|+.+|+++++.       .|....++..+|.++...|++++|.....  ..+......  
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~--~al~~~~~~--  229 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRI--  229 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHc--
Confidence             347999999999999999999999999953       22235688999999999999999977632  111111100  


Q ss_pred             HHHHhhhhcCchhhhHHHHHHHHH-HHHHHHHhhhhhhhchh
Q 024419          147 FKSEMSEKYGAEECWKHVFSFVVE-TMETAVKSWHETSKVDA  187 (268)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~  187 (268)
                         ......+..+...|..+..++ .+++|+..|.+++.+..
T Consensus       230 ---~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          230 ---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             ---TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence               001112344566677777777 46888888888876544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.56  E-value=1.4e-13  Score=111.70  Aligned_cols=186  Identities=11%  Similarity=0.077  Sum_probs=133.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 024419           20 AGNYLKAAALYTQAIKQDPSN-----------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKG   82 (268)
Q Consensus        20 ~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la   82 (268)
                      .|++++|.++++++.+..+..           ...+...|.+|...|++++|+.+|.+++.+.+..      ..++..+|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555555555555432210           1234445789999999999999999999986543      56899999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcC
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG  156 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (268)
                      .+|..+|++++|+.+|++++++.+..      ..++..+|.++.. |++++|+....  ..+...+.....     ....
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~--~Al~~~~~~~~~-----~~~~  155 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ--QAAAVFENEERL-----RQAA  155 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH--HHHHHHHHTTCH-----HHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH--HHHHHHHhCCCh-----hHHH
Confidence            99999999999999999999985432      4678899999988 99999976642  222221111000     0012


Q ss_pred             chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419          157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKYAPIVNVDKAFE  214 (268)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~  214 (268)
                      ..+...+.++..++++++|+..|++++.+.|.                ++..+|++.+|+..|++++ ++|.+.
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            33455566777789999999999999887654                3445699999999999999 988764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.56  E-value=3.9e-15  Score=127.50  Aligned_cols=144  Identities=9%  Similarity=0.080  Sum_probs=118.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCIL   85 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~   85 (268)
                      +++++|+..|++++..+|..+..+.++|.+++..|+|++|+..|++++.++|.+               ..+|.++|.++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            456678888888889999999999999999999999999999999999999998               79999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (268)
                      ..+|++++|+..|+++++++|+++.+++.+|.++..++++++|.....  ..+.           +.+.....+...+.+
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~--~al~-----------l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE--KVLE-----------VNPQNKAARLQISMC  394 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHT-----------TC----CHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH--HHHH-----------hCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999976531  1111           222333445555555


Q ss_pred             HHHHHHHHHHHH
Q 024419          166 SFVVETMETAVK  177 (268)
Q Consensus       166 ~~~~~~~~~A~~  177 (268)
                      ...+++++++.+
T Consensus       395 ~~~~~~~~~a~~  406 (457)
T 1kt0_A          395 QKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.55  E-value=5.7e-14  Score=101.28  Aligned_cols=91  Identities=15%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK-----GYFRKGCILEAMEQYDDALSAFQTALQY----  104 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~~l~~----  104 (268)
                      +..+.++|.+++..|+|++|+..|+++|+++|+       +..     +|.++|.++..+|+|++|+.+|+++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            467899999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHhHHH
Q 024419          105 ---NPQSAEVS----RKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       105 ---~p~~~~~~----~~l~~~~~~~~~~~~a~~~  131 (268)
                         +|++..+|    ++.|.++..+|++++|+..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~  124 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  124 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence               99999999    9999999999999999665

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.55  E-value=1.8e-12  Score=105.76  Aligned_cols=171  Identities=8%  Similarity=0.046  Sum_probs=132.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      .-..++-.........+..++|++.+.++|.++|++..+|+.++.++..+| .+++++..+.+++..+|++..+|..++.
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            334444444455555566689999999999999999999999999999999 5999999999999999999999999999


Q ss_pred             HHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--------HhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419           84 ILEAM-E-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--------RAQEVENIRSNVDMVQHLDEFKSEMSE  153 (268)
Q Consensus        84 ~~~~~-~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      ++... + +++++++.+.++++.+|.|..+|...+.+....+.++        ++.+.  ....+...+           
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~--~~k~I~~dp-----------  198 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW--CNEMLRVDG-----------  198 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--HHHHHHHCT-----------
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH--HHHHHHhCC-----------
Confidence            99998 8 9999999999999999999999999999999888776        33322  111121111           


Q ss_pred             hcCchhhhHHHHHHH-------HHHHHHHHHhhhhhhhchhH
Q 024419          154 KYGAEECWKHVFSFV-------VETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ....++..++.+...       ...++++++.+.+++.++|.
T Consensus       199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~  240 (349)
T 3q7a_A          199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH  240 (349)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence            111122222222221       23478899999999999997

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.53  E-value=3.2e-14  Score=96.91  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=92.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSR  113 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~  113 (268)
                      ++|++..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|+++++.+|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            378899999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHH-HHHHHhHHHH
Q 024419          114 KIKRVSQLA-KDKKRAQEVE  132 (268)
Q Consensus       114 ~l~~~~~~~-~~~~~a~~~~  132 (268)
                      .++.++... |++++|.+..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            999999999 9999997663

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=3.1e-13  Score=94.91  Aligned_cols=96  Identities=17%  Similarity=0.215  Sum_probs=91.6

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                      .|.+..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHH
Q 024419          117 RVSQLAKDKKRAQEVE  132 (268)
Q Consensus       117 ~~~~~~~~~~~a~~~~  132 (268)
                      .++...|++++|....
T Consensus        92 ~~~~~~~~~~~A~~~~  107 (133)
T 2lni_A           92 AALEAMKDYTKAMDVY  107 (133)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHH
Confidence            9999999999997663

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.52  E-value=1.2e-13  Score=100.19  Aligned_cols=128  Identities=16%  Similarity=0.216  Sum_probs=111.4

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---   74 (268)
                      +..+.++..+|..+...|++++|+.++++++...+...      .++..+|.++...|++++|+..+++++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            45678899999999999999999999999999865432      589999999999999999999999999886543   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                         ..++..+|.++...|++++|+..+++++++.+.      ...++..++.++...|++++|...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence               678999999999999999999999999987432      256788899999999999988665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=7.3e-15  Score=116.24  Aligned_cols=166  Identities=14%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH-------HHHHHHcCChHHHHHHHHHHHhhCCCCHH-
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-------AAAFLHLVKLNKALADAETTISLNPQWEK-   76 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~~-   76 (268)
                      ++...++..|.-+ ..+++..|.+.|.+++..+|+..++|.++       +.++..+++..+++..+++.+.+.|.... 
T Consensus         5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            3456778888876 68999999999999999999999999999       89999999999999999999999887543 


Q ss_pred             --------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 024419           77 --------------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS  136 (268)
Q Consensus        77 --------------------~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  136 (268)
                                          ++..+|.++...|+|++|.+.|..++...|++. +.+.++.++...+++++|+....  .
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~--~  160 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK--S  160 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT--T
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH--H
Confidence                                444588999999999999999999999999988 99999999999999999977642  1


Q ss_pred             hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 024419          137 NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS  183 (268)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  183 (268)
                      .......   ..      ...+....|.....++++++|+..|.+++
T Consensus       161 a~~~~d~---~~------~~~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          161 AGKWPDK---FL------AGAAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             GGGCSCH---HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhccCCc---cc------HHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            1000000   00      01234455555555666666666666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.1e-13  Score=94.42  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR  113 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~  113 (268)
                      ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88899


Q ss_pred             HHHHHHHHHHHHHHhH
Q 024419          114 KIKRVSQLAKDKKRAQ  129 (268)
Q Consensus       114 ~l~~~~~~~~~~~~a~  129 (268)
                      .++.++...|.++.|.
T Consensus        83 ~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHhHhhhH
Confidence            9999988888766653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.51  E-value=2.4e-13  Score=89.24  Aligned_cols=84  Identities=19%  Similarity=0.374  Sum_probs=79.9

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      .++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 024419          119 SQLA  122 (268)
Q Consensus       119 ~~~~  122 (268)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.50  E-value=4.8e-13  Score=101.17  Aligned_cols=164  Identities=12%  Similarity=0.079  Sum_probs=111.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHccC
Q 024419           17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS------LNPQWEKGYFRKGCILEAMEQ   90 (268)
Q Consensus        17 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~   90 (268)
                      ++..|++++|.+.++......+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45789999999966555553336778999999999999999999999999998      344557889999999999999


Q ss_pred             HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           91 YDDALSAFQTALQY---NPQS----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        91 ~~~A~~~~~~~l~~---~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      +++|+..+++++++   .|++    ..++..+|.++...|++++|.......  +.........     ..........+
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~-----~~~~~~~~~la  154 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS--LVYAQQADDQ-----VAIACAFRGLG  154 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHHHHhccch-----HHHHHHHHHHH
Confidence            99999999999988   4433    457888999999999999987663211  1110000000     00011223444


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchh
Q 024419          164 VFSFVVETMETAVKSWHETSKVDA  187 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~  187 (268)
                      .++...+++++|+..+.+++.+..
T Consensus       155 ~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHH
Confidence            555566677777777776665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.50  E-value=5.6e-14  Score=94.09  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   88 (268)
                      .+.+|..++..|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+..|++++.++|++..++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356888889999999999999999999999988 99999999999999999999999999999998887744        


Q ss_pred             cCHHHHHHHHHHHHhhCCCCH
Q 024419           89 EQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        89 ~~~~~A~~~~~~~l~~~p~~~  109 (268)
                      +.+.+++..|++++..+|+++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            667778888888888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.49  E-value=9.2e-13  Score=106.07  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH--
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI---SLNPQWE--   75 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~--   75 (268)
                      ...+..+|..+...|++++|+.+|++++...+..      ..++.++|.+|..+|++++|+..|++++   ...|++.  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            3456678889999999999999999999876544      5689999999999999999999999999   5566643  


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHh-HHH
Q 024419           76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRA-QEV  131 (268)
Q Consensus        76 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a-~~~  131 (268)
                        .+++++|.+|..+|++++|+..+++++++.++      ...++..+|.++..+|++++| ...
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~  259 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA  259 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence              68999999999999999999999999988643      277899999999999999998 553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=2.9e-13  Score=94.58  Aligned_cols=97  Identities=11%  Similarity=0.177  Sum_probs=91.5

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      +.+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHH
Q 024419          115 IKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       115 l~~~~~~~~~~~~a~~~  131 (268)
                      +|.++...|++++|...
T Consensus        86 ~~~~~~~~~~~~~A~~~  102 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAY  102 (131)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHH
Confidence            99999999999999765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.48  E-value=3.2e-13  Score=97.16  Aligned_cols=101  Identities=18%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY----------DDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        52 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      .+.+.+++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|++..+|+.+|.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999999875          599999999999999999999999999987


Q ss_pred             HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      +|.+.                               +..     ....+++++|+.+|.++++++|+
T Consensus        93 lg~l~-------------------------------P~~-----~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           93 FAFLT-------------------------------PDE-----TEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHC-------------------------------CCH-----HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hcccC-------------------------------cch-----hhhhccHHHHHHHHHHHHHhCCC
Confidence            76530                               000     11248899999999999999987

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.48  E-value=6.1e-13  Score=89.41  Aligned_cols=83  Identities=19%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHH
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSR  113 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~  113 (268)
                      .+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++++.|.+  .....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            4788888999999999999999999999999999999988899999999999999999999999998887643  33333


Q ss_pred             HHHHH
Q 024419          114 KIKRV  118 (268)
Q Consensus       114 ~l~~~  118 (268)
                      .+..+
T Consensus        82 ~l~~~   86 (100)
T 3ma5_A           82 ELQDA   86 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=4.7e-13  Score=98.04  Aligned_cols=92  Identities=8%  Similarity=0.026  Sum_probs=87.5

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISL------------------NPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      .+..+..+|..++..|+|++|+..|.+++.+                  +|.++.++.++|.++..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3578899999999999999999999999999                  7778899999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419          102 LQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       102 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++++|+++.++..+|.++..+|++++|...
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence            999999999999999999999999999765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.47  E-value=1.5e-12  Score=106.25  Aligned_cols=122  Identities=6%  Similarity=-0.041  Sum_probs=116.0

Q ss_pred             chHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-C-ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-V-KLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      +|++..+|..++.++...| .+++++..+..++..+|++..+|..++.++..+ + ++++++..+.+++..+|+|..+|.
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            6889999999999999999 599999999999999999999999999999998 8 999999999999999999999999


Q ss_pred             HHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           80 RKGCILEAMEQYD--------DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        80 ~la~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      .++.++...|.++        ++++.+.++++.+|.|..+|...+.+....+.
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999888        99999999999999999999999999877654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.47  E-value=4.2e-13  Score=101.49  Aligned_cols=127  Identities=12%  Similarity=0.050  Sum_probs=110.6

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC--
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ--   73 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~--   73 (268)
                      ..+.++..+|.++...|++++|+..+++++.      ..|....++.++|.++..+|++++|+..+++++.+   .|+  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            5688999999999999999999999999999      45556789999999999999999999999999998   443  


Q ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           74 --WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QS----AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        74 --~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                        ...++..+|.++...|++++|+..+++++.+.+  .+    ..++..+|.++...|++++|...
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  169 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH  169 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence              356799999999999999999999999997643  22    23568899999999999999765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.46  E-value=1.4e-12  Score=121.10  Aligned_cols=206  Identities=11%  Similarity=0.018  Sum_probs=119.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc----------------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQ----------------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      .|.++...|.+++|..+|+++-..                      ..+++.+|..+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            477778888888887777775210                      1344667777777777777777777777664   


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                        +++..|..+|.++.+.|++++|+++|..+.+..|+. .+...++.++..+++++....+..                 
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~----------------- 1191 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFIN----------------- 1191 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHh-----------------
Confidence              666677777777777777777777777777666432 122235555555555543322210                 


Q ss_pred             hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh--HHHHHhhhhhhhHhhhhHHhcCCc-----------------
Q 024419          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNVDK-----------------  211 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~-----------------  211 (268)
                        ..........|......+++++|+..|.++.....  ..+..+|+++.|++.++++.+..+                 
T Consensus      1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHH
Confidence              00001112234445556666666666666532221  145555666666666666654432                 


Q ss_pred             -----------cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419          212 -----------AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       212 -----------~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~  246 (268)
                                 +.  ....+.+|...|.|  |...+++++ .++|.+.
T Consensus      1270 ~~cgl~Iiv~~de--Leeli~yYe~~G~feEAI~LlE~aL-~LeraH~ 1314 (1630)
T 1xi4_A         1270 QMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAAL-GLERAHM 1314 (1630)
T ss_pred             HHHHHhhhcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHh
Confidence                       11  11234455555666  888889999 8887764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.46  E-value=5.9e-12  Score=107.61  Aligned_cols=215  Identities=7%  Similarity=-0.015  Sum_probs=147.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYL----KAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKG   77 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~   77 (268)
                      .++.+.+.+|..+...+.++    +|..+++.+...+|   .+++.+|.+|...|   ++++|+..|+++....|.....
T Consensus       139 g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~  215 (452)
T 3e4b_A          139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR  215 (452)
T ss_dssp             TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH
Confidence            34667788888888888544    44444555555444   49999999999999   9999999999999999999988


Q ss_pred             HHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           78 YFRKGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRV-S--QLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        78 ~~~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ++.+|.+|...    +++++|+..|+++.   |+++.++..+|.+ +  ...+++++|.....               ..
T Consensus       216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~---------------~A  277 (452)
T 3e4b_A          216 VDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD---------------NG  277 (452)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH---------------HH
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---------------HH
Confidence            89999999766    79999999999988   8999999999998 4  34566677755531               11


Q ss_pred             hhhhcCchhhhHHHHHHHHH-----HHHHHHHhhhhhhhchhHHHH------Hhh-----hhhhhHhhhhHHhcCCcccc
Q 024419          151 MSEKYGAEECWKHVFSFVVE-----TMETAVKSWHETSKVDAKVYF------LLD-----KEKTDTEKYAPIVNVDKAFE  214 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~------~~~-----~~~~a~~~~~~~~~~~~~~~  214 (268)
                      ............+.++. .+     ++++|+..|+++..-++...+      ..|     +..+|+..|+++...+... 
T Consensus       278 a~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~-  355 (452)
T 3e4b_A          278 RAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS-  355 (452)
T ss_dssp             HHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT-
T ss_pred             HHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH-
Confidence            11222233344454444 34     889999999998833333222      222     7888999999988863211 


Q ss_pred             CccchhHHHHH----HHHH--HHHHHHHHhhhhCC
Q 024419          215 SPHTHGSCFQF----LRQY--ADDSFSSAACLVAP  243 (268)
Q Consensus       215 ~~~~~~~~~~~----~~~~--a~~~~~ka~~~~~p  243 (268)
                      ....+|.+|..    ..++  |..+|++|. ...+
T Consensus       356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~-~~g~  389 (452)
T 3e4b_A          356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAK-AQDT  389 (452)
T ss_dssp             HHHHHHHHHHSCTTBCCCHHHHHHHHHHHH-TTCC
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-HCCC
Confidence            01123444332    1133  888888888 5544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.46  E-value=3.7e-13  Score=108.41  Aligned_cols=123  Identities=10%  Similarity=0.014  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-------NPQWE   75 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~   75 (268)
                      .+..+|..+...+++++|+.+|++++...+..      ..++.++|.+|..+|++++|+.+|+++++.       .|..+
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            44568999999999999999999999975543      347999999999999999999999999953       22335


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH-HHHhHHH
Q 024419           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD-KKRAQEV  131 (268)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~-~~~a~~~  131 (268)
                      .+++++|.+|..+|++++|+..+++++++.+..      ..++..+|.++..+|+ +++|...
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~  259 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA  259 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            689999999999999999999999999987544      7899999999999994 6888665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=1.7e-12  Score=88.96  Aligned_cols=92  Identities=12%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHH
Q 024419          120 QLAKDKKRAQEV  131 (268)
Q Consensus       120 ~~~~~~~~a~~~  131 (268)
                      ...|++++|...
T Consensus        83 ~~~~~~~~A~~~   94 (118)
T 1elw_A           83 EFLNRFEEAKRT   94 (118)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHHhhHHHHHHH
Confidence            999999999765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.44  E-value=4.7e-12  Score=87.57  Aligned_cols=96  Identities=22%  Similarity=0.348  Sum_probs=88.6

Q ss_pred             cCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           36 QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        36 ~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      .+|.. ..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35655 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHH
Q 024419          115 IKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       115 l~~~~~~~~~~~~a~~~  131 (268)
                      ++.++...+++++|...
T Consensus        83 la~~~~~~~~~~~A~~~   99 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEY   99 (125)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHH
Confidence            99999999999999765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-12  Score=92.15  Aligned_cols=97  Identities=11%  Similarity=0.042  Sum_probs=92.2

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      .+|.+...++.+|.++...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..++++++++|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            467889999999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHH
Q 024419          113 RKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       113 ~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ..+|.++...+++++|....
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~  122 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999997663

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.43  E-value=1.5e-12  Score=91.22  Aligned_cols=91  Identities=18%  Similarity=0.044  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKI  115 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l  115 (268)
                      .+++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++.+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHHHHHHHhHHHH
Q 024419          116 KRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       116 ~~~~~~~~~~~~a~~~~  132 (268)
                      |.++...|++++|....
T Consensus        83 a~~~~~~g~~~~A~~~~   99 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTL   99 (129)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999997663

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=1.9e-12  Score=89.46  Aligned_cols=82  Identities=21%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..+++++..+|+++.+.....
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999987654433


Q ss_pred             HH
Q 024419           83 CI   84 (268)
Q Consensus        83 ~~   84 (268)
                      .+
T Consensus       103 ai  104 (117)
T 3k9i_A          103 AI  104 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.41  E-value=3.2e-13  Score=116.19  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=97.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHccCHHHHHHHHH-----------HHHhhCCCCHH
Q 024419           83 CI--LEAMEQYDDALSAFQ-----------TALQYNPQSAE  110 (268)
Q Consensus        83 ~~--~~~~~~~~~A~~~~~-----------~~l~~~p~~~~  110 (268)
                      .+  +...|++++|++.++           +++.++|+...
T Consensus       116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            98  888999999999999           88888887643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.41  E-value=4.7e-12  Score=108.23  Aligned_cols=184  Identities=7%  Similarity=-0.002  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHH
Q 024419            6 EEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      ++.+++.+|.++...|   ++++|+..|+++.+..|..+..++++|.+|...    +++++|+..|+++.   |.++.++
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~  251 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW  251 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence            4558899999999999   999999999999999999999999999999776    79999999999998   9999999


Q ss_pred             HHHHHH-H--HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-----HHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           79 FRKGCI-L--EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-----DKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        79 ~~la~~-~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      +.+|.+ +  ...+++++|+..|+++.+.  +++.++..+|.++. .|     ++++|..+.....              
T Consensus       252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------------  314 (452)
T 3e4b_A          252 VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------------  314 (452)
T ss_dssp             HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------------
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------------
Confidence            999999 4  5689999999999999854  58999999999997 55     7888866642111              


Q ss_pred             hhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhch-hHHHHH-----------hhhhhhhHhhhhHHhcCCc
Q 024419          151 MSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVD-AKVYFL-----------LDKEKTDTEKYAPIVNVDK  211 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~-~~~~~~-----------~~~~~~a~~~~~~~~~~~~  211 (268)
                        ..........+.++..    ..++++|+..|+++.+.. +...+.           ..+..+|..+|+++.....
T Consensus       315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence              1111122233332222    347889999999887643 222221           2377889999999988754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.41  E-value=2e-12  Score=86.88  Aligned_cols=88  Identities=15%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHH
Q 024419            1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGY   78 (268)
Q Consensus         1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~   78 (268)
                      +..|.++.+++.+|.+++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++.+.|.  +....
T Consensus         1 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            3568899999999999999999999999999999999999999999999999999999999999999998764  34444


Q ss_pred             HHHHHHHHHc
Q 024419           79 FRKGCILEAM   88 (268)
Q Consensus        79 ~~la~~~~~~   88 (268)
                      ..+...+...
T Consensus        81 ~~l~~~l~~~   90 (100)
T 3ma5_A           81 SELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            4444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.39  E-value=2.9e-12  Score=89.50  Aligned_cols=94  Identities=11%  Similarity=0.061  Sum_probs=88.5

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV  111 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~  111 (268)
                      ..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999999887       899


Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q 024419          112 SRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus       112 ~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +..+|.++...|++++|....
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHH
Confidence            999999999999999997663

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.37  E-value=8.3e-11  Score=109.58  Aligned_cols=115  Identities=10%  Similarity=0.029  Sum_probs=91.0

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-----------   73 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------   73 (268)
                      ..+.+|..+|..+...|++++|+..|.++     ++...+..+|.++.+.|++++|++.+..+.+..++           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            45788999999999999999999999876     78899999999999999999999999888766533           


Q ss_pred             ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           74 ----------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        74 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                                      +...+..+|..+...|+|++|+..|.++        ..|..++.++..+|++++|.+..
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence                            2234556777777777777777777775        46667777777777777776554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.37  E-value=3.3e-12  Score=97.95  Aligned_cols=124  Identities=13%  Similarity=0.060  Sum_probs=110.6

Q ss_pred             hHhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--C
Q 024419            4 EAEEMSLKDKGNEFFKAG----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNP--Q   73 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~   73 (268)
                      +.++.+++.+|..+.. +    ++++|+.+|+++.+  +.++.+++++|.+|..    .+++++|+.+|+++++..|  .
T Consensus        47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  123 (212)
T 3rjv_A           47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA  123 (212)
T ss_dssp             TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred             cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence            3567889999999988 7    99999999999965  6799999999999998    8999999999999999988  4


Q ss_pred             CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-H-----HHHHhHHH
Q 024419           74 WEKGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-K-----DKKRAQEV  131 (268)
Q Consensus        74 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~-----~~~~a~~~  131 (268)
                      ++.+++.+|.+|..    .+++++|+..|+++++. |.++.++..+|.++... +     ++++|..+
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~  190 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW  190 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence            69999999999999    88999999999999999 88888999999998754 2     67777655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.35  E-value=1.1e-12  Score=107.85  Aligned_cols=103  Identities=12%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LE   86 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~   86 (268)
                      .++.++|.++...|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999988 44


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      ..+..+.+...|.+++...|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788899999999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.4e-11  Score=102.72  Aligned_cols=199  Identities=11%  Similarity=0.066  Sum_probs=146.5

Q ss_pred             CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHcCChHHHHHH
Q 024419            1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALAD   63 (268)
Q Consensus         1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~   63 (268)
                      |+.|.   +.+..|..+...|+|++|++.|.++++.+|...                 .++.++|.+|...|++++|++.
T Consensus         1 ~s~p~---~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~   77 (434)
T 4b4t_Q            1 MSLPG---SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREF   77 (434)
T ss_dssp             CCSTT---HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCChH---HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            44553   578899999999999999999999999988753                 3688999999999999999999


Q ss_pred             HHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           64 AETTISLNPQWE------KGYFRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        64 ~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +.+++...+...      .+...+|.++...|+++.|+..+++++...+      ....++..+|.++...|++++|..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  157 (434)
T 4b4t_Q           78 IPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL  157 (434)
T ss_dssp             HHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH
Confidence            999998866543      3455678888889999999999999987643      2367889999999999999999776


Q ss_pred             HhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhh
Q 024419          132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLD  194 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~  194 (268)
                      ....  ........     -.......+...+.++...+++++|...+.+++.+.+.                 ++...+
T Consensus       158 l~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~  230 (434)
T 4b4t_Q          158 INDL--LREFKKLD-----DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK  230 (434)
T ss_dssp             HHHH--HHHHTTSS-----CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred             HHHH--HHHHHhcc-----cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            3210  00000000     00011123444555677788888888888887766543                 233456


Q ss_pred             hhhhhHhhhhHHhcC
Q 024419          195 KEKTDTEKYAPIVNV  209 (268)
Q Consensus       195 ~~~~a~~~~~~~~~~  209 (268)
                      ++..|...|..++..
T Consensus       231 ~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          231 DYKTAFSYFFESFES  245 (434)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            778888888777765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.31  E-value=2.2e-11  Score=104.49  Aligned_cols=125  Identities=11%  Similarity=0.053  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW   74 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~   74 (268)
                      ......+..+..+|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+..+++++.+     -|++
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34456667788999999999999999986     3444   578999999999999999999999999976     3444


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHHHHHHHhHHHH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSA---EVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                         ...+.++|.+|..+|++++|+..|++++++     -|+++   .....++.++..++.+++|+...
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~  458 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY  458 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               567999999999999999999999999976     46664   45667888888888898887764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.30  E-value=2.9e-11  Score=100.57  Aligned_cols=94  Identities=18%  Similarity=0.178  Sum_probs=89.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+..+..+|.+++..|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHH
Q 024419           83 CILEAMEQYDDALS   96 (268)
Q Consensus        83 ~~~~~~~~~~~A~~   96 (268)
                      .++...++++++..
T Consensus       349 ~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          349 KVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.29  E-value=4.6e-13  Score=111.94  Aligned_cols=200  Identities=8%  Similarity=-0.064  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      +++|..+|..+...|++++|++.|.++     .++..+..++.++...|++++|+..++.+.+..|+ +.+...++.+|.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence            456777777777777777777777653     34557777777777777777777777777664333 555666777777


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (268)
                      +.|+++++.+.++.     | +..+|..+|..+...|.+++|..+....                     ..+...+...
T Consensus       106 Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------------~n~~~LA~~L  158 (449)
T 1b89_A          106 KTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------SNFGRLASTL  158 (449)
T ss_dssp             ---CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT---------------------TCHHHHHHHH
T ss_pred             HhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------hhHHHHHHHH
Confidence            77777776655532     3 3347777777777777777775553211                     1222233334


Q ss_pred             HHHHHHHHHHHhhhhhhhchhH-------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHH
Q 024419          167 FVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSA  237 (268)
Q Consensus       167 ~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka  237 (268)
                      ..++++++|++.+.++.  +|.       ++...|+++.|...... +...|+.  ......+|...|.+  +...++++
T Consensus       159 ~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          159 VHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             HTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44567777777777774  342       45556666666554443 2234433  11234556666666  77888888


Q ss_pred             hhhhCCCC
Q 024419          238 ACLVAPKS  245 (268)
Q Consensus       238 ~~~~~p~~  245 (268)
                      + .++|.+
T Consensus       234 L-~le~ah  240 (449)
T 1b89_A          234 L-GLERAH  240 (449)
T ss_dssp             T-TSTTCC
T ss_pred             h-CCcHHH
Confidence            8 777655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.29  E-value=5.3e-11  Score=79.31  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      .+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            367899999999999999999999999999999 99999999999999999999999999999999998743

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.28  E-value=4.7e-11  Score=94.46  Aligned_cols=125  Identities=8%  Similarity=0.023  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCI   84 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~   84 (268)
                      .+.....+..+...|+|++|.+.|..++...|.+. +.+.+|.++++.++|++|+..|++++...+..  ..+++.+|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45667788999999999999999999999999888 99999999999999999999999887753221  3589999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYN--PQ-SAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +..+|++++|+..|++++.-.  |. .++++..+|.++..+|+.++|....
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l  231 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL  231 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998544  66 5679999999999999999997764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.26  E-value=1.4e-10  Score=82.58  Aligned_cols=99  Identities=13%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 024419           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDDALS   96 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~   96 (268)
                      ....+.+.|.+.++.+|.+..+.+++|+|+.+.+   +.++++..++.+++.+ | ++.++++.+|..+.++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567888899999999999999999999999988   6679999999999999 7 678999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      +++++|+++|+|..+......+..
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999988776655543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.26  E-value=1.5e-10  Score=76.29  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           37 DPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        37 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      +|+++.++..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+|++|+..|+++++.+|..+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68888889999988876665   688999999999999999999999999999999999999999999988888433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=4.7e-11  Score=82.00  Aligned_cols=87  Identities=9%  Similarity=0.019  Sum_probs=75.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR   80 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~   80 (268)
                      .|.++..++.+|.++...|++++|+..|++++..+|.+..+++.+|.++..+|++++|+..|++++.++|.  +..+...
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999885  4445555


Q ss_pred             HHHHHHHcc
Q 024419           81 KGCILEAME   89 (268)
Q Consensus        81 la~~~~~~~   89 (268)
                      +...+...+
T Consensus        95 l~~~l~~l~  103 (115)
T 2kat_A           95 LQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            554444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.22  E-value=9.4e-11  Score=84.62  Aligned_cols=101  Identities=13%  Similarity=0.214  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------C
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------W   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~   74 (268)
                      +.++..+|.++...|++++|+.++++++...+..      ..++.++|.++...|++++|+..+++++.+.+.      .
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            4688999999999999999999999999986543      578999999999999999999999999987432      2


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      ..++..+|.++...|++++|+..+++++++...
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999987554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=7.7e-10  Score=88.68  Aligned_cols=124  Identities=11%  Similarity=-0.006  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFR   80 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~   80 (268)
                      ..++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+.+|+    +-.+...
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            44556788888888888888888888888776  77788888888888888888888888888888873    2223344


Q ss_pred             H--HHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           81 K--GCILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        81 l--a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +  |.+....|  ++++|...|+++.+..|+.......+. ++..+|++++|+..
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHH
Confidence            4  43455555  788888888888777776222222222 67777888888766

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=5.1e-09  Score=83.94  Aligned_cols=169  Identities=10%  Similarity=0.022  Sum_probs=119.6

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (268)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  103 (268)
                      |+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78888888877666777788999999999999999999999999997  8899999999999999999999999999999


Q ss_pred             hCCC----CHHHHHHHH--HHHHHHH--HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc---hhhhHHHHHHHHHHH
Q 024419          104 YNPQ----SAEVSRKIK--RVSQLAK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA---EECWKHVFSFVVETM  172 (268)
Q Consensus       104 ~~p~----~~~~~~~l~--~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  172 (268)
                      .+|+    +-.+...++  .+....|  .+++|..+..                ++...++.   ...... ....++++
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~----------------El~~~~p~~~~~~lLln-~~~~~g~~  227 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYE----------------ELSQTFPTWKTQLGLLN-LHLQQRNI  227 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHH----------------HHHTTSCSHHHHHHHHH-HHHHHTCH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHH----------------HHHHhCCCcccHHHHHH-HHHHcCCH
Confidence            9994    233334444  3455555  5666644321                11112221   111111 45567888


Q ss_pred             HHHHHhhhhhhhc-------------hhH-------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          173 ETAVKSWHETSKV-------------DAK-------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       173 ~~A~~~~~~~~~~-------------~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      ++|.+.++..++.             +|.       +...+|+  .+.+..+++....|..
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            8888888766555             222       2334465  7777778888877754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.15  E-value=6.9e-09  Score=92.43  Aligned_cols=207  Identities=10%  Similarity=-0.027  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL-ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      +.....|++++...|.++.+|+..+..+...|+.++|+ ..|++++...|.+...|+.++......|+++.|.+.|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44678899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hh-----------CCC-----------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419          103 QY-----------NPQ-----------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (268)
Q Consensus       103 ~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (268)
                      ..           .|.           ...+|...+.+....+..+.|..+....  +...          .......+.
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A--~~~~----------~~~~~~lyi  473 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC--RRLK----------KLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHTG----------GGSCTHHHH
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhc----------CCCChHHHH
Confidence            75           253           3457888888888888888877663211  1000          000111122


Q ss_pred             hHHHHHHHH-HHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--
Q 024419          161 WKHVFSFVV-ETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR--  227 (268)
Q Consensus       161 ~~~~~~~~~-~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  227 (268)
                      ..+.++... ++.+.|.+.|+++++..|.          .....|+.+.|...|++++...+..   ......+...-  
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~---~~~~~lw~~~~~f  550 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS---HLLKMIFQKVIFF  550 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST---THHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHH
Confidence            222222222 2366777777777776664          2335688999999999999986631   11222222222  


Q ss_pred             --HH-----HHHHHHHHhhhhCCCCc
Q 024419          228 --QY-----ADDSFSSAACLVAPKSI  246 (268)
Q Consensus       228 --~~-----a~~~~~ka~~~~~p~~~  246 (268)
                        .+     +.+..+++. +..|++.
T Consensus       551 E~~~G~~~~~~~v~~R~~-~~~P~~~  575 (679)
T 4e6h_A          551 ESKVGSLNSVRTLEKRFF-EKFPEVN  575 (679)
T ss_dssp             HHHTCCSHHHHHHHHHHH-HHSTTCC
T ss_pred             HHHcCCHHHHHHHHHHHH-HhCCCCc
Confidence              22     888889999 9999863

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.14  E-value=8.2e-12  Score=104.43  Aligned_cols=110  Identities=12%  Similarity=0.025  Sum_probs=19.5

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      .++..+...+..+...|+|++|+.+++.+++..+ ++.+...++.||.++|++.++++.++     .| +..+|..+|..
T Consensus        59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~  131 (449)
T 1b89_A           59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDR  131 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTT-----CC------------
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHH
Confidence            3455777788888888888888888888876422 24444445555555555555444442     12 22244444444


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      +...|+|++|+..|.++        ..|..++.++..+|++++|.
T Consensus       132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence            44444444444444443        23444444444444444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.13  E-value=3.4e-10  Score=74.59  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             CchHhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      +.|.+++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+..|++++..+|..+
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            358899999999999987766   79999999999999999999999999999999999999999999999999843

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.11  E-value=3.5e-10  Score=95.53  Aligned_cols=127  Identities=13%  Similarity=0.092  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------C
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNP------Q   73 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~   73 (268)
                      ...++..+|.++...|++++|++++.+++...+...      .+...+|.++...|++++|+..+++++...+      .
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            345789999999999999999999999998866543      3566788899999999999999999987633      2


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ...++..+|.++...|+|++|+..+++++..      .|....++..++.++...|++++|....
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  198 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL  198 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3678999999999999999999999999876      2334678999999999999999997764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.06  E-value=2.5e-09  Score=72.07  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      +..++.+|..++..|+|..|+..|+.|++..       +....++..+|.|+.++|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4455666666666666666666666666542       122344455555555555555555555555555555544444


Q ss_pred             HH
Q 024419           80 RK   81 (268)
Q Consensus        80 ~l   81 (268)
                      ++
T Consensus        85 n~   86 (104)
T 2v5f_A           85 NL   86 (104)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.05  E-value=5.6e-09  Score=70.32  Aligned_cols=80  Identities=9%  Similarity=-0.053  Sum_probs=71.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      ++.-.+.+|..++..++|..|+..|++|++..       +..+.++..+|.++.++|+++.|+..++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45677899999999999999999999999863       34578999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 024419          113 RKIKRVS  119 (268)
Q Consensus       113 ~~l~~~~  119 (268)
                      .+++.+.
T Consensus        84 ~n~~~~~   90 (104)
T 2v5f_A           84 GNLKYFE   90 (104)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            8777443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=4.4e-09  Score=74.71  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS   96 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~   96 (268)
                      +++++|+..|+++.+..+..  +.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            46778888888888775333  33  888888878888888888888776  577888888888887    778888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVE  132 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~  132 (268)
                      .|+++.+.  .++.+...+|.++..    .++.++|..+.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            88888766  677888888888877    66777776653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.01  E-value=2.5e-09  Score=90.46  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW   74 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~   74 (268)
                      .........+..+|+|++|+..++++++.     .|++   ..++.++|.+|..+|+|++|+..+++++.+     -|++
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            34455566677899999999999999986     3444   578999999999999999999999999976     3444


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 024419           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR  113 (268)
Q Consensus        75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~  113 (268)
                         ...+.++|.+|..+|++++|+..|++++++     -|+++....
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence               567999999999999999999999999976     467765543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.01  E-value=2.9e-09  Score=90.00  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKG   77 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~   77 (268)
                      +......|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+..+++++.+        +|+-...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            33444568999999999999985     4555   467899999999999999999999999976        3444567


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHH
Q 024419           78 YFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVS  112 (268)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~  112 (268)
                      +.++|.+|..+|++++|+..|++++++     -|+++..-
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999999999976     46776554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.00  E-value=1.1e-08  Score=91.04  Aligned_cols=198  Identities=7%  Similarity=-0.063  Sum_probs=147.3

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----------   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------   70 (268)
                      .|..+..|+..+..+...|+.++|. ..|.+|+...|.+..+|+..+......|+++.|...|++++..           
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3667889999999999999999997 9999999999999999999999999999999999999999975           


Q ss_pred             CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHH-HHHhHHHHhhhhh
Q 024419           71 NPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSN  137 (268)
Q Consensus        71 ~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~  137 (268)
                      .|.           ...+|...+......|..+.|...|.++++. .+....+|...+.+....+. .+.|..+...  .
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~--~  496 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL--G  496 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH--H
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH--H
Confidence            253           3568999999999999999999999999988 44556777666666544433 5666554210  0


Q ss_pred             HHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh---H----------HHHHhhhhhhhHhhhh
Q 024419          138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---K----------VYFLLDKEKTDTEKYA  204 (268)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~----------~~~~~~~~~~a~~~~~  204 (268)
                      +..           .+...........+....++.+.|...|++++...|   .          .-...|+.+.+...++
T Consensus       497 Lk~-----------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          497 LKY-----------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             HHH-----------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHH-----------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            111           111111111222344556788899999999887766   2          1225588888888888


Q ss_pred             HHhcCCccc
Q 024419          205 PIVNVDKAF  213 (268)
Q Consensus       205 ~~~~~~~~~  213 (268)
                      ++....|..
T Consensus       566 R~~~~~P~~  574 (679)
T 4e6h_A          566 RFFEKFPEV  574 (679)
T ss_dssp             HHHHHSTTC
T ss_pred             HHHHhCCCC
Confidence            888887753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=5.5e-09  Score=74.23  Aligned_cols=98  Identities=14%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 024419           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA-   87 (268)
Q Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-   87 (268)
                      +|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            888888889999999999999987  689999999999999    89999999999999987  689999999999999 


Q ss_pred             ---ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419           88 ---MEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (268)
Q Consensus        88 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  116 (268)
                         .+++++|+..|+++.+.  .++.+...++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               89999999999999987  4555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.97  E-value=1.5e-08  Score=82.67  Aligned_cols=126  Identities=12%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh----H---HHHH-HHH--HHHhhCC
Q 024419            6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----N---KALA-DAE--TTISLNP   72 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----~---~A~~-~~~--~al~~~p   72 (268)
                      ++-.++.+|..++..++   +.+|+.+|++|++++|+++.++..++.||.....+    .   .++. .++  .++..+|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            45566788888887654   58999999999999999999999999998642211    1   1111 122  2235679


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ..+.++..+|..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|.+..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999975 778889999999999999997663

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.96  E-value=1.2e-08  Score=80.09  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=93.0

Q ss_pred             chHhHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-----CChHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFK-----AG------NYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHL-----VKLNKALADA   64 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~   64 (268)
                      .|.+++.++..|-....     .|      ....|...+++++++||+  +..+|..+|..|...     |+.++|..+|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            46778888887776643     13      357899999999999999  788999999999995     9999999999


Q ss_pred             HHHHhhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 024419           65 ETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        65 ~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      ++++.++|+. +.+++..|..+.. .|+++.|...+++++..+|..
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999975 9999999999988 599999999999999998863

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.88  E-value=6.1e-09  Score=89.40  Aligned_cols=103  Identities=5%  Similarity=-0.080  Sum_probs=89.1

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   70 (268)
                      .|.-+..+.++|.++..+|+|++|+.++++++++        +|..+..+.++|.+|..+|++++|+..|++|+.+    
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4667888999999999999999999999999986        3444578999999999999999999999999976    


Q ss_pred             -CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419           71 -NPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYN  105 (268)
Q Consensus        71 -~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  105 (268)
                       -|++   .+....++.++..++.+++|...|.++.+..
T Consensus       427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4555   4567789999999999999999999986543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.83  E-value=9.5e-08  Score=65.51  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=88.6

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHH
Q 024419           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLN-P-QWEKGYFRKGCILEAMEQYD   92 (268)
Q Consensus        18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~   92 (268)
                      ........+...|.+.+..++.+..+.+++|+++.+..+...   +|..++..+..+ | ..-+.++.+|..+++.|+|+
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            344456778888999988889999999999999999988776   999999999987 5 56789999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           93 DALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      +|+.+++.+|+++|+|..+......+.
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999998876655543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=4.6e-08  Score=69.58  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=71.7

Q ss_pred             hHhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   78 (268)
                      |.+.++.++.|.++...+   +.++++.+++.+++.+ | ++.++++++|..++++|+|++|+.+++++++++|+|..+.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            456789999999999988   7779999999999998 7 6789999999999999999999999999999999998776


Q ss_pred             HHHHH
Q 024419           79 FRKGC   83 (268)
Q Consensus        79 ~~la~   83 (268)
                      ..+-.
T Consensus       109 ~Lk~~  113 (152)
T 1pc2_A          109 ELERL  113 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.59  E-value=4.2e-07  Score=74.23  Aligned_cols=75  Identities=19%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (268)
Q Consensus        35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  110 (268)
                      ..+|.++.++..+|.++...|++++|+..+++++.++|. ..+|..+|.++...|++++|++.|++++.++|..+.
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            567999999999999999999999999999999999975 778899999999999999999999999999998753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.48  E-value=5.2e-06  Score=65.31  Aligned_cols=97  Identities=11%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             hcCCCChHHHHHHHHHHHH---c--CC------hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----cCHHHHHH
Q 024419           35 KQDPSNPTLFSNRAAAFLH---L--VK------LNKALADAETTISLNPQ--WEKGYFRKGCILEAM-----EQYDDALS   96 (268)
Q Consensus        35 ~~~p~~~~~~~~~a~~~~~---~--~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~   96 (268)
                      +.+|+++++++..|.....   .  |.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            3467888888888877654   2  32      46899999999999999  577999999999995     99999999


Q ss_pred             HHHHHHhhCCCC-HHHHHHHHHHHHHH-HHHHHhHHH
Q 024419           97 AFQTALQYNPQS-AEVSRKIKRVSQLA-KDKKRAQEV  131 (268)
Q Consensus        97 ~~~~~l~~~p~~-~~~~~~l~~~~~~~-~~~~~a~~~  131 (268)
                      +|+++++++|+. ..++...+..+... ++.+.+...
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~  262 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA  262 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999975 99999999987664 777777655

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.46  E-value=2.2e-06  Score=61.37  Aligned_cols=111  Identities=13%  Similarity=0.169  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC-
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---------TLFSNRAAAFLHLVKLNKALADAETTISLN---PQW-   74 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~-   74 (268)
                      .+++.....++..|.|+.|+-....++....++.         .++..+|.+++..++|..|...|+++|+..   |++ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3678888999999999999999999877643333         478899999999999999999999997652   111 


Q ss_pred             ---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           75 ---------------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        75 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                                           .++.+.+|.||...+++++|+..++.+-.. -..+.+...||++|
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence                                 267788889999999998888887664222 23466666666654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.41  E-value=9e-06  Score=57.02  Aligned_cols=111  Identities=11%  Similarity=-0.033  Sum_probs=95.7

Q ss_pred             CchHhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNY------LKAAALYTQAIKQDPSN--------PTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      -.|.+.+.|+.....+...|+.      +.-++.|++|+..-|-.        ...|...|.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4678899999999999999999      89999999999987643        3566666744 6679999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (268)
Q Consensus        68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  113 (268)
                      +.++..++.+|...|.--.++|+...|.+.+.+++.+.|.....+.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            9998899999999999999999999999999999999998766544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.33  E-value=6.3e-05  Score=64.77  Aligned_cols=126  Identities=12%  Similarity=-0.036  Sum_probs=77.0

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH---------------------------------
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA---------------------------------   50 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~---------------------------------   50 (268)
                      |..+..|+..+..+...|+.+.|...|++|+.. |.+...|+..+..                                 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            455677788888888888888888888888888 8776555544332                                 


Q ss_pred             -------HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           51 -------FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        51 -------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                             ..+.++.+.|...|.++ ...+....+|...|.+-...+ +.+.|...|+.+++..|+.+..+...+......
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence                   11234456666666666 322223445555555544444 466666666666666666666555555555555


Q ss_pred             HHHHHhHHH
Q 024419          123 KDKKRAQEV  131 (268)
Q Consensus       123 ~~~~~a~~~  131 (268)
                      |+.+.|..+
T Consensus       368 ~~~~~aR~l  376 (493)
T 2uy1_A          368 GDEENARAL  376 (493)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            555555444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.30  E-value=1.7e-06  Score=73.07  Aligned_cols=84  Identities=10%  Similarity=-0.019  Sum_probs=68.6

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   70 (268)
                      .|.-+..+.++|.++..+|+|++|+.++++++.+        +|.-+..++++|.+|..+|++++|+..+++|+.+    
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            4566788999999999999999999999999976        3344577999999999999999999999999976    


Q ss_pred             -CCCCH---HHHHHHHHHHH
Q 024419           71 -NPQWE---KGYFRKGCILE   86 (268)
Q Consensus        71 -~p~~~---~~~~~la~~~~   86 (268)
                       -|+++   .++..++.+..
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHH
Confidence             46665   34445555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.29  E-value=2.7e-06  Score=71.84  Aligned_cols=75  Identities=7%  Similarity=-0.024  Sum_probs=65.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   70 (268)
                      .|.-+..+.++|.+|..+|+|++|+.++++++++        +|.-+..++++|.+|..+|++++|+..|++|+.+    
T Consensus       336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            4666788999999999999999999999999986        3444578999999999999999999999999986    


Q ss_pred             -CCCCHHH
Q 024419           71 -NPQWEKG   77 (268)
Q Consensus        71 -~p~~~~~   77 (268)
                       -|+++.+
T Consensus       416 lG~~Hp~~  423 (433)
T 3qww_A          416 HGKDHPYI  423 (433)
T ss_dssp             TCTTCHHH
T ss_pred             cCCCChHH
Confidence             5666644

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.25  E-value=3.4e-05  Score=53.03  Aligned_cols=82  Identities=9%  Similarity=-0.031  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419           39 SNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  114 (268)
                      -++.+.+++|+|+.+..+.   .++|..++..++.+|. .-+.++.+|..++++|+|++|+.+.+.+|+++|+|..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4678999999999998765   4799999999999985 47899999999999999999999999999999999988766


Q ss_pred             HHHHHH
Q 024419          115 IKRVSQ  120 (268)
Q Consensus       115 l~~~~~  120 (268)
                      ...+..
T Consensus       118 k~~Ie~  123 (134)
T 3o48_A          118 KSMVED  123 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.24  E-value=0.0001  Score=51.30  Aligned_cols=82  Identities=9%  Similarity=-0.038  Sum_probs=71.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           37 DPSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        37 ~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      ++-+..+.+++|+|+.+..+.   .+++..++..+..+|. .-+.++.+|..++++|+|++|..+.+.+|+.+|+|..+.
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            356789999999999998765   4799999999999985 568899999999999999999999999999999998886


Q ss_pred             HHHHHH
Q 024419          113 RKIKRV  118 (268)
Q Consensus       113 ~~l~~~  118 (268)
                      .....+
T Consensus       115 ~Lk~~I  120 (144)
T 1y8m_A          115 ALKSMV  120 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.10  E-value=1.4e-05  Score=54.69  Aligned_cols=80  Identities=11%  Similarity=0.030  Sum_probs=69.5

Q ss_pred             HhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLK---AAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      ...++-+..|.++....+..+   +|.+++..+..+ | ...+.++.+|..++++|+|++|..+++.+|+..|+|..+.-
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            457788999999999887776   999999999987 5 56789999999999999999999999999999999987765


Q ss_pred             HHHHH
Q 024419           80 RKGCI   84 (268)
Q Consensus        80 ~la~~   84 (268)
                      ....+
T Consensus       113 Lk~~i  117 (126)
T 1nzn_A          113 LERLI  117 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.80  E-value=0.00032  Score=48.19  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .+.+-++.|.++....+.   ..+|.+++..+..+|. ..+.++.+|..++++|+|+.|..+.+.+++..|+|..+.-..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            467889999999988755   5799999999999984 578999999999999999999999999999999998776544


Q ss_pred             HHH
Q 024419           82 GCI   84 (268)
Q Consensus        82 a~~   84 (268)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.74  E-value=0.00062  Score=47.39  Aligned_cols=78  Identities=13%  Similarity=-0.026  Sum_probs=67.4

Q ss_pred             HhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   80 (268)
                      ...++-++.|.++....+.   .++|.+++..+...|. ..+.++.+|..++++|+|++|..+.+.+|+..|+|..+.-.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3567889999999988765   5799999999999884 56899999999999999999999999999999999776544


Q ss_pred             HH
Q 024419           81 KG   82 (268)
Q Consensus        81 la   82 (268)
                      ..
T Consensus       117 k~  118 (144)
T 1y8m_A          117 KS  118 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.69  E-value=0.0014  Score=56.30  Aligned_cols=119  Identities=9%  Similarity=-0.005  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ...|...+......++.+.|...|.+| ...+....+|...|......+ +.+.|...|+.+++..|+.+..+...+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            345677777777788999999999999 443345677877787777666 699999999999999999998888888888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  130 (268)
                      ...|+.+.|...|+++    +.....|..........|+.+.+..
T Consensus       365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~  405 (493)
T 2uy1_A          365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRE  405 (493)
T ss_dssp             HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            8999999999999998    3456777776666666666665544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.57  E-value=0.00052  Score=48.19  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             hcCCCChHHHHHHHHHHHHcCCh------HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419           35 KQDPSNPTLFSNRAAAFLHLVKL------NKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        35 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~  100 (268)
                      -..|++.+.|..........|+.      ++-++.|++|+..-|.        .+..|...|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            45899999999999999999999      8999999999987764        35667777754 566999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419          101 ALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       101 ~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      ++.++...+.+|...++....+|+...|..+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI  116 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQL  116 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999888899999999999999999999776

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.52  E-value=0.00084  Score=48.07  Aligned_cols=92  Identities=16%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC-
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLN---PQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN---PQS-  108 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~-  108 (268)
                      .+++.-...++..|.|+.|+-....++.+.   |+-      ..+++.+|.+++..++|..|...|+++|+..   |.+ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345555667788999999999999977663   331      3578999999999999999999999987552   111 


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419          109 ---------------------AEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus       109 ---------------------~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                                           .++.+.++.|+..++++++|+...+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                                 2678899999999999999987754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.25  E-value=0.019  Score=41.20  Aligned_cols=100  Identities=11%  Similarity=0.034  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh--h--C------------
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--L--N------------   71 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~--~------------   71 (268)
                      +--...+-.++-+|+|..|+-.+.     .-+...+.+-.+.||....+|.+|+.+.++.++  .  +            
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            444567778889999998887753     234567777789999999999999999999982  2  2            


Q ss_pred             -CCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           72 -PQWEKG-YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        72 -p~~~~~-~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                       |.+-+. +..+|.++.+.|+.++|+.+|......+|-.+.+-
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence             334443 45569999999999999999999999988766554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.12  E-value=0.0054  Score=52.49  Aligned_cols=80  Identities=8%  Similarity=-0.017  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      .+..+|.+..-...++.|..+|.+|+.++|++..+|.++|.+....|+.-+|+-+|-+++......+.+..++..++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            55678888888889999999999999999999999999999999999999999999999988877899999888877643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.07  E-value=0.052  Score=46.69  Aligned_cols=112  Identities=12%  Similarity=0.040  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419           22 NYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (268)
                      +.+.|.+.|++..... +-+..+|..+-.+|.+.|++++|...|++..... +-+...|..+-..+.+.|+.++|.+.|+
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            3688889998877653 2266788888899999999999999999887752 2256678888888999999999999999


Q ss_pred             HHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419          100 TALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (268)
Q Consensus       100 ~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~  133 (268)
                      ...+.. .-+...+..+-..+...|+.++|.++..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~  199 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ  199 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            987653 2356677778888888888988887643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.04  E-value=0.027  Score=46.79  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAET   66 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~   66 (268)
                      .+...|......|+.+.|...+.+|+.+-...                      ..+...++.++...|++.+|+..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455666667899999999999999884321                      02233456666777777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      ++..+|-+-.+|..+-.++...|+..+|+..|+++-
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777777777777777777777777777777654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.92  E-value=0.0093  Score=51.05  Aligned_cols=79  Identities=14%  Similarity=0.015  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      .+..+|........+..|..+|.+|+.+.|+++..++.+|.+....|+.-+|+-+|.+++.....++.+.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5677899999999999999999999999999999999999999999999999999999999887889899888887765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.86  E-value=0.04  Score=47.37  Aligned_cols=111  Identities=9%  Similarity=-0.028  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGC   83 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~   83 (268)
                      +...+..+...+.+.|++++|.+.+++..+.. +-+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            45577888889999999999999999988753 23678888899999999999999999999987532 25667888999


Q ss_pred             HHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKR  117 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~  117 (268)
                      ++.+.|+.++|.+.+++.-+.  .|+. ..+..+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~  218 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEE  218 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence            999999999999999998654  4543 33333433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0047  Score=55.46  Aligned_cols=61  Identities=16%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      ...+...+..+...|+|+-|+.+.++|+...|.+...|..++.||..+|+|+.|+-.+..+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4467778888999999999999999999999999999999999999999999999887666

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.76  E-value=0.03  Score=43.50  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK   76 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   76 (268)
                      ..+++.|+.++|++.....++.+|.++.....+...+.-.|+++.|...++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            45678899999999999999999999999999999999999999999999999999998753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.013  Score=52.69  Aligned_cols=111  Identities=15%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             cCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHH--H-cCChHHHHHHHHHHHhh--------CCCC----------HHH
Q 024419           20 AGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFL--H-LVKLNKALADAETTISL--------NPQW----------EKG   77 (268)
Q Consensus        20 ~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~--~-~~~~~~A~~~~~~al~~--------~p~~----------~~~   77 (268)
                      .++ ++.|+.++++....+|..... +..+.+..  . ..+--+|+....++++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 578999999999988866432 22332221  1 23345677777777642        2333          224


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +..-+.-+...|+++.|+++-++++...|.....|..|+.+|..+|+++.|.-.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            444566677789999999999999999999999999999999999999999654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.063  Score=45.18  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC---HHHHH
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW---EKGYF   79 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~---~~~~~   79 (268)
                      ++..+|..++..|++++|.+.|.++......   ..+.++....++...+++..+...+.++-.+-   ++.   .....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5678999999999999999999999886543   35788889999999999999999999986652   221   23445


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419           80 RKGCILEAMEQYDDALSAFQTALQYNPQ  107 (268)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~  107 (268)
                      ..|.++...++|.+|...|-.++.....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            5677888899999999999888766443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.90  E-value=0.13  Score=42.66  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC----HHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW----EKG   77 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~   77 (268)
                      ..+|..++..|+|.+|+..+.+.++....      -.+++..-..+|..++++.++...+.++....   +.+    +..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999998875322      14667778889999999999999999987653   122    344


Q ss_pred             HHHHHHHHH-HccCHHHHHHHHHHHHhhC
Q 024419           78 YFRKGCILE-AMEQYDDALSAFQTALQYN  105 (268)
Q Consensus        78 ~~~la~~~~-~~~~~~~A~~~~~~~l~~~  105 (268)
                      ...-|..+. ..++|..|...|-.+++-.
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            556688888 8999999999999887543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.79  E-value=0.2  Score=45.30  Aligned_cols=103  Identities=13%  Similarity=-0.026  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ   90 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~   90 (268)
                      ......+...|.+++|++..+        +....   .......|+++.|.+..+     ..++...|..+|..+...++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence            334444555666666655431        11111   222345566666655532     22445556666666666666


Q ss_pred             HHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           91 YDDALSAFQTAL--------QYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        91 ~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      ++.|+.+|.++=        .....+.+.+..++.+....|++..|.
T Consensus       697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~  743 (814)
T 3mkq_A          697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF  743 (814)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence            666666665531        112334444444444444444444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.64  E-value=0.071  Score=44.20  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      .++..++..+...|++.+|+..+.+++..+|-+..++..+-.++...|+..+|+..|+++-.
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566788889999999999999999999999999999999999999999999999988754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.31  Score=35.36  Aligned_cols=68  Identities=10%  Similarity=-0.046  Sum_probs=50.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (268)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A   94 (268)
                      ......|+++.|.+..+..     ++...|..+|...+..|+++-|+.+|.++-..        -.+..+|...|+.+.-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHH
Confidence            3457789999999997765     57889999999999999999999999887322        2333445555665443


Q ss_pred             H
Q 024419           95 L   95 (268)
Q Consensus        95 ~   95 (268)
                      .
T Consensus        80 ~   80 (177)
T 3mkq_B           80 S   80 (177)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.50  E-value=0.15  Score=39.63  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=58.1

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      -.++.|+.++|++.....++.+|.++.....+-..+.-.|+++.|..-++.+.+++|.....-
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            456789999999999999999999999999999999999999999999999999999876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.08  E-value=0.42  Score=43.18  Aligned_cols=106  Identities=12%  Similarity=0.006  Sum_probs=72.4

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419           15 NEFFKAGNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (268)
Q Consensus        15 ~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~   93 (268)
                      ......+++++|.+ .+    ..-| +..........+...|.++.|+...+        ++...+.   .....|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l----~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVL----PNVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTG----GGCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHH----hcCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHH
Confidence            34467899999877 44    1111 02223666777888899888886542        3333333   4567899999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHh
Q 024419           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV  141 (268)
Q Consensus        94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  141 (268)
                      |.+..+     ..+++..|..+|......++++.|+..+.........
T Consensus       671 A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l  713 (814)
T 3mkq_A          671 ARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESL  713 (814)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhh
Confidence            988754     3467899999999999999999999886554444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.7  Score=38.97  Aligned_cols=99  Identities=14%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCH-
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTIS---LNPQWE-   75 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~-   75 (268)
                      .++.-..++..+...|++.+|...+.......-.      -.+++.....+|...+++.+|...++++..   -.+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            3555678899999999999999999998653211      157788889999999999999999998742   233333 


Q ss_pred             ---HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           76 ---KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        76 ---~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                         ..+...|..+...++|.+|-.+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               45677789999999999999999988764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.16  E-value=1.5  Score=41.66  Aligned_cols=93  Identities=12%  Similarity=-0.010  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--------------------CCChHHHHHHHHHHHHcCChHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ---D--------------------PSNPTLFSNRAAAFLHLVKLNKALADA   64 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~   64 (268)
                      -.-+.+|.++...|++++|.++|.++-.-   +                    ...+..|.++...+.+.+-++.+++..
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34477888888888888888888776211   0                    011245666677777777788888877


Q ss_pred             HHHHhhCCC-CH----HHHHHHHHHHHHccCHHHHHHHHHH
Q 024419           65 ETTISLNPQ-WE----KGYFRKGCILEAMEQYDDALSAFQT  100 (268)
Q Consensus        65 ~~al~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~  100 (268)
                      +.|++..+. +.    ..|.++=..+...|+|++|...+..
T Consensus       923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            777776433 22    2455566667777788777665543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.04  E-value=1  Score=42.80  Aligned_cols=116  Identities=17%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC-----------------
Q 024419           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS---LN-----------------   71 (268)
Q Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~-----------------   71 (268)
                      .+...+...+.++-|.+    .+...|.++..-+-+|.++...|++++|..+|+++-.   .+                 
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455666677765544    3456778887789999999999999999999988732   11                 


Q ss_pred             ---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHHHHHHHhHHH
Q 024419           72 ---PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP-QSAE----VSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        72 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~----~~~~l~~~~~~~~~~~~a~~~  131 (268)
                         ...+..|..+..++.+.+.++.+++.-+.|++..+ ++..    .|..+=......+++++|-..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a  960 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA  960 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence               11234567778889999999999999999998765 3332    455666666677888887443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.02  E-value=1.6  Score=40.82  Aligned_cols=96  Identities=8%  Similarity=-0.094  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRK   81 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l   81 (268)
                      ..+..+-..+.+.|+.++|...+.+..+.    ..-+...|..+-..|.+.|+.++|.+.|++....  .| +...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence            45778888999999999999999775432    2347789999999999999999999999999875  45 55677777


Q ss_pred             HHHHHHccC-HHHHHHHHHHHHhh
Q 024419           82 GCILEAMEQ-YDDALSAFQTALQY  104 (268)
Q Consensus        82 a~~~~~~~~-~~~A~~~~~~~l~~  104 (268)
                      -.++.+.|+ .++|.+.|++..+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc
Confidence            778888887 57888888887764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.85  E-value=1.2  Score=36.77  Aligned_cols=124  Identities=14%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHH-cCChHHHHHHHHHHHhhCCCC----HH-
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLF-----SNRAAAFLH-LVKLNKALADAETTISLNPQW----EK-   76 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~----~~-   76 (268)
                      .+...+|..+...|++++-.+++......-+.-+.+.     ..+-..+.. .+..+.-++.+..+++-..+.    .. 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999998888776654432222111     111111111 233344444444444321111    11 


Q ss_pred             -HHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419           77 -GYFRKGCILEAMEQYDDALSAFQTALQYNP--QS----AEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        77 -~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                       .-..+|..|...|+|.+|.+.+.+.++.-.  ++    .+++..-.+++..+++..++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~  161 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAA  161 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHH
Confidence             222567777777777777666666654321  11    23444444555555555555444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.13  E-value=2.5  Score=30.60  Aligned_cols=55  Identities=22%  Similarity=0.079  Sum_probs=44.4

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      +++...+.++   .+.|+++.|.+..+..     ++...|..+|......|+++-|..+|.++
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3455555555   6789999999887655     56788999999999999999999999887

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.93  E-value=0.97  Score=38.69  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                      +.++..+=..|...+.+++|.....++.  .|.+       ...++.+|.++...++|.+|.+++..|+...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            4667778889999999999999999985  4432       4567788999999999999999999999998865

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.32  E-value=0.77  Score=38.51  Aligned_cols=65  Identities=5%  Similarity=-0.107  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q-WEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      -..++..+|..|...|+++.|.+.|.++.....  . -.+.++....++...+++..+...+.++..+
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            356889999999999999999999999887533  2 3688888899999999999999999998765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.31  E-value=1.7  Score=38.34  Aligned_cols=80  Identities=13%  Similarity=-0.006  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (268)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  102 (268)
                      ..++...+.+.....+++ ...-.++...++.|+++.|...+.+.-...+......+.+|.++...|+.++|...|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            344455555544333222 2222233333455777777777765544333446667777777777777777777777765


Q ss_pred             h
Q 024419          103 Q  103 (268)
Q Consensus       103 ~  103 (268)
                      .
T Consensus       347 ~  347 (618)
T 1qsa_A          347 Q  347 (618)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.44  E-value=8.3  Score=35.95  Aligned_cols=95  Identities=22%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh-hC-------------------
Q 024419           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LN-------------------   71 (268)
Q Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~-------------------   71 (268)
                      .+...+...|.++-|.    ..+...|.++..-+-+|.+|...|++++|..+|++|-. +.                   
T Consensus       815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~  890 (950)
T 4gq2_M          815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  890 (950)
T ss_dssp             HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence            3566677778777554    35677888887778899999999999999999987742 11                   


Q ss_pred             -CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH
Q 024419           72 -PQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAE  110 (268)
Q Consensus        72 -p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~  110 (268)
                       +.  ....|.....++...+-++-+++..+.|++. .++++.
T Consensus       891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence             11  1235666778888888898888888888864 445544

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.36  E-value=2.3  Score=25.75  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT   42 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~   42 (268)
                      ..+|..+...|++++|+.+|-+|+...|+-..
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            34677777777777777777777777665443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.26  E-value=1.5  Score=37.63  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=57.2

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   74 (268)
                      ..+..+..+-..|...+.|++|..+..++.  .|.+       ...++..|.++.-.++|.+|.+++..|+...|.+
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            445567778888999999999999999985  4432       4677788999999999999999999999988764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.52  E-value=15  Score=34.56  Aligned_cols=89  Identities=6%  Similarity=-0.162  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKI  115 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l  115 (268)
                      ..+..+-.+|.+.|+.++|...|...-+.    -.-+...|..+-..+.+.|++++|.+.|++..+.  .| |...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence            35777888999999999999999775432    2336678899999999999999999999999765  35 55666666


Q ss_pred             HHHHHHHHH-HHHhHHH
Q 024419          116 KRVSQLAKD-KKRAQEV  131 (268)
Q Consensus       116 ~~~~~~~~~-~~~a~~~  131 (268)
                      -..+...|. .+.|.++
T Consensus       207 I~glcK~G~~~e~A~~L  223 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERC  223 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHH
Confidence            666666665 3556544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.30  E-value=6.2  Score=27.34  Aligned_cols=55  Identities=13%  Similarity=-0.040  Sum_probs=39.7

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      ....+|+-++-.+.+...+.-+|-++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            4566777777666666666666667888888888888888888888888777654

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=85.22  E-value=1.8  Score=27.16  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   35 (268)
                      .+..+...|-..-..|+|++|+.+|..+++
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555566666666666666666655554

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.28  E-value=11  Score=27.84  Aligned_cols=77  Identities=10%  Similarity=0.060  Sum_probs=57.6

Q ss_pred             HHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHH
Q 024419           28 ALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALS   96 (268)
Q Consensus        28 ~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~   96 (268)
                      ..+++++..         ||....+|...+.++ ..++...+...|......  --..+..|...|..+...|++.+|.+
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~  136 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV  136 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            566777664         333346677777655 234467888888877764  45578889999999999999999999


Q ss_pred             HHHHHHhhC
Q 024419           97 AFQTALQYN  105 (268)
Q Consensus        97 ~~~~~l~~~  105 (268)
                      .|+.+++..
T Consensus       137 Vy~~GI~~~  145 (202)
T 3esl_A          137 LLELGAENN  145 (202)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999865

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=82.00  E-value=3  Score=37.07  Aligned_cols=47  Identities=11%  Similarity=-0.021  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~   89 (268)
                      .....|...+..|+|.-|.+....++..+|+|..+...++.+|.++|
T Consensus       451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~  497 (658)
T 2cfu_A          451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  497 (658)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            33344444444445555555555555555555444444454444444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=81.89  E-value=9.9  Score=26.36  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHH--HHcCChHHHHHHHHHH
Q 024419            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------------------TLFSNRAAAF--LHLVKLNKALADAETT   67 (268)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------~~~~~~a~~~--~~~~~~~~A~~~~~~a   67 (268)
                      .--..-|.-+...|..++.++...+..+-.|-+.                  ..+-.+|..+  ...|+...-+.+|-+.
T Consensus         8 ~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~   87 (172)
T 1wy6_A            8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN   87 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh
Confidence            3345567778889999999999999887665432                  2233344432  3457788888887654


Q ss_pred             HhhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           68 ISLNPQWEKGYFRKG-CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        68 l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      =.   .+  -|+.+| ..+...|+-++=.+.+...+.-+|-+++.+..++..|...|...+|.++.
T Consensus        88 n~---~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           88 NT---LN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             TC---CC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cc---hH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            22   22  345555 45667888888778888877778888999999999999999999988764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=81.56  E-value=13  Score=26.89  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      -.++-.+|+.++=.-.-.   -|..++..+.++.+++-.|+|..|+-.+.     +-+...+.+..+.||...++|..|+
T Consensus        11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~   82 (242)
T 3kae_A           11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAI   82 (242)
T ss_dssp             HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788776443332   44455777788999999999998876653     2345667788899999999999999


Q ss_pred             HHHHHHH--hh---------------CCCCHH-HHHHHHHHHHHHHHHHHhHHHH
Q 024419           96 SAFQTAL--QY---------------NPQSAE-VSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        96 ~~~~~~l--~~---------------~p~~~~-~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .++++.+  ++               +|.+.+ .+..+|.+....|..++|+...
T Consensus        83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~  137 (242)
T 3kae_A           83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY  137 (242)
T ss_dssp             HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence            9999999  23               244444 4567788888889999997653

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=80.59  E-value=18  Score=29.36  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 024419           60 ALADAETTISL-----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRV  118 (268)
Q Consensus        60 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~  118 (268)
                      ++..|.+++..     +..++..|..+|-.+++.+++.+|+..+..+-..      ..++.++|..+-.+
T Consensus       276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI  345 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI  345 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence            67777777754     4567889999999999999999999998887543      23456666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-12
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-11
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	8e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	8e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
            A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD
Sbjct: 3   SAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
               + L+ Q  K +F  G     ME YD+A++  Q A     +           +    
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162
            KKR   +E  R + +   H    +   +E+    E  +
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ 159

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 8e-13
 Identities = 23/123 (18%), Positives = 43/123 (34%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +   +    +++ G    A   Y +AI+  P  P  + N A A      + +A     T 
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
           + L P           I       ++A+  ++ AL+  P+ A     +  V Q     + 
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357

Query: 128 AQE 130
           A  
Sbjct: 358 ALM 360

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 20/121 (16%), Positives = 42/121 (34%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F   G    A   + +A+  DP+    + N           ++A+A     +SL+P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132
                +    C+       D A+  ++ A++  P   +    +    +       A++  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 133 N 133
           N
Sbjct: 295 N 295

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 14/82 (17%), Positives = 33/82 (40%)

Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
            +  +  ++AG++  A     Q  +Q+P N  +    ++      +L+++   +   I 
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 70 LNPQWEKGYFRKGCILEAMEQY 91
           NP   + Y   G + +   Q 
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 3e-11
 Identities = 16/102 (15%), Positives = 44/102 (43%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           +  +  N   + G+  +A   Y  A++  P++    +N A        + +A+      +
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + P++   +     +L+   +  +AL  ++ A++ +P  A+
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 23/122 (18%), Positives = 48/122 (39%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           +  + GN   +A  + +A A Y +A+   P++  +  N A  +     ++ A+      I
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            L P +   Y      L+      +A   + TAL+  P  A+    +  + +   + + A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

Query: 129 QE 130
             
Sbjct: 325 VR 326

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I ++P 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 74  WEKGYFRKGCILEAME 89
           +   Y   G  L+ M+
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 30  YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89
           Y +AI+  P+    +SN    F    ++  A+   E  ++L+P +   Y   G +L+   
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 90  QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE-----VENIRSNVDMVQHL 144
            +D A++A+  AL  +P  A V   +  V         A +     +E      D   +L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 145 DEFKSEMSEKYGAEECWKH 163
                E      AE+C+  
Sbjct: 278 ANALKEKGSVAEAEDCYNT 296

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 9e-13
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           + +  K+ GN+ +K  ++  A   Y +A + DP+N T  +N+AA +      NK     E
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 66  TTISLNPQWEKGY-------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
             I +  +  + Y        R G      E+Y DA+  +  +L  +  + +V +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121

Query: 119 SQLAKDK 125
            ++ K++
Sbjct: 122 EKILKEQ 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 6e-12
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
                  G   +A  L  +AIK  P + +L S+            +A      +I L P+
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK-----KRA 128
           +  G  +   +++A +   D      TA             +     +         + A
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 129 QEVENIRSNVDMVQHLDEF 147
            ++E +R     + +   F
Sbjct: 123 LQIEELRQEKGFLANDTSF 141

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 6e-12
 Identities = 37/110 (33%), Positives = 60/110 (54%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+
Sbjct: 5   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +
Sbjct: 65  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
            E +SL ++G       ++  A   ++        +  +  N    +  L  + +A    
Sbjct: 3   VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
             +I+ +      YF++G +    E+YD A+   + AL     +  +  K
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.0 bits (139), Expect = 4e-11
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA---------------IKQDPSNPTLFSNRAAAFLH 53
            +K+KG  +FK G Y++A   Y +                   +      F N A  +L 
Sbjct: 17  IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 76

Query: 54  LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+     
Sbjct: 77  LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 136

Query: 114 KIKRVSQLAKDKKRAQ 129
           +I    + AK+     
Sbjct: 137 QIFMCQKKAKEHNERD 152

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA----------------IKQDPSNPTLFSNRAAAFL 52
            LK+ GN FFK+ N+  A   YT+                  K  P   +   N  A  L
Sbjct: 29  DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 88

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            +     A+      + ++P   K  +R+    + +++YD AL+  + A +  P+   + 
Sbjct: 89  KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 148

Query: 113 RKIKRVSQLAKDKKRAQ 129
            ++ +V Q  K +K  +
Sbjct: 149 AELLKVKQKIKAQKDKE 165

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 8e-10
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL 
Sbjct: 8   KRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 65

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ 
Sbjct: 66  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125

Query: 123 KDKKRAQEVENIRSNVDMVQHLD 145
           K K   + +        +V  LD
Sbjct: 126 KQKAFERAIAGDEHKRSVVDSLD 148

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFL 52
            +K++GNEFFK     +A   Y +A+                       +   N A  + 
Sbjct: 19  DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 78

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                 KA+  A   + ++    K  ++ G         ++A      A   NP + ++ 
Sbjct: 79  KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138

Query: 113 RKIKRVSQLAKDKKR 127
              +      K+ ++
Sbjct: 139 NSYELCVNKLKEARK 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA---------------IKQDPSNPTLFSNRAAAFLH 53
            +K++G  +FK G Y +A   Y +                 K          N A   L 
Sbjct: 15  IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 74

Query: 54  LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L   + A+      + L+   EKG  R+G    A+  ++ A + FQ  LQ  P +     
Sbjct: 75  LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134

Query: 114 KIKRVSQLAKDKKRAQE 130
           ++    Q  + +   ++
Sbjct: 135 QLAVCQQRIRRQLAREK 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 19/152 (12%), Positives = 50/152 (32%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           ++G    + G+   A  L+  A++QDP +   +           +   A++     + L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
           P  +                  A    +  L+Y P  A +    +  +  A      + +
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
            ++ S+   ++  + F + +     + +    
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 12/136 (8%), Positives = 39/136 (28%), Gaps = 4/136 (2%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
                G    K  +        + +      +     +      +  + ++A +      
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            L P   + Y +   +  +   +   +  +  ++         S  +++   L+K  +  
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA--LSKALESR 237

Query: 129 QEVENIRSNVDMVQHL 144
            EV+      D ++  
Sbjct: 238 DEVKTKWGVSDFIKAF 253

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 13/151 (8%), Positives = 31/151 (20%), Gaps = 38/151 (25%)

Query: 24  LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---------- 73
           L++A    QA              A  +     L       +  +  + +          
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQD 59

Query: 74  -WEKGY------FRK------------------GCILEAMEQYDDALSAFQTALQYNPQS 108
            W   +       +                     +  A   Y   L    T    +   
Sbjct: 60  LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119

Query: 109 AEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 139
              S ++  +S          + ++   +  
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNP 72
                +     +A  L   AI+ + +N T++  R      L K L++ +      I   P
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109
           +  + +  +  ++E +      L      L  + ++ 
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 146

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFL 52
                          AG Y +AAA   +A++   +            +    +  A A  
Sbjct: 7   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66

Query: 53  HLVKLNKALADAETTISLNPQWEKG-----------YFRKGCILEAMEQYDDALSAFQTA 101
            L   ++AL  A+  +    +  +             + +   L+ + +  +A+  F+  
Sbjct: 67  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126

Query: 102 LQYNPQSAEVSRKIKRVSQLAKDK 125
           ++   +    +   +R+ ++A D+
Sbjct: 127 VEMIEERKGETPGKERMMEVAIDR 150

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 12/121 (9%), Positives = 30/121 (24%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           +     F      ++A  Y + +                   L    ++  + +     N
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
                        L+ +    + L  F T    +P  A     ++    L     + +  
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

Query: 132 E 132
           +
Sbjct: 333 D 333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 15  NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK-----ALADAETTIS 69
           NE     + LK    +         + +     A   +     +       L +      
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAKD 124
              +     F        +++Y+ AL   +  LQ  PQ+ +     + +   + KD
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 22/154 (14%), Positives = 48/154 (31%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L ++G  +   G    A   ++QA+   P  P +F+            + A    ++ + 
Sbjct: 40  LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129
           L+P +   +  +G  L    +   A        Q +P     S  +    Q   +K+  +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159

Query: 130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
            ++      D  Q               +   + 
Sbjct: 160 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
             +        +    + +   ++     +             + +  ADA    SL   
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKD 124
             +  F  G    ++   D A + F+ A+  N  +    R     +S L +D
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 259

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 15/135 (11%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 32  QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-----KGYFRKGCILE 86
           + I++D  +    + RA   ++    ++A   A+  +   P              G +L 
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 87  AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146
              +   +L+  Q   Q   Q       +  + Q ++       ++      +    L  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 147 FKSEMSEKYGAEECW 161
            +             
Sbjct: 123 EQHLEQLPMHEFLVR 137

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA-------ET 66
            +     G Y++A+ +Y++ IK    N     +    FL       A  DA       + 
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 67  TISLNPQWEKGYFRKGC--ILEAMEQ-----YDDALSAFQTALQYNPQSAEVSRKIKR 117
             S +P +           +++A+ +       +    F   ++ +     +  KIK 
Sbjct: 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.89
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.86
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.84
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.8
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.6
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.52
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.36
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.34
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.33
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.19
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.01
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.87
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.66
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.17
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.12
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.02
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.79
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.19
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	86.74
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.7
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.82
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.18
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.68
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	81.78
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.74

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-26  Score=183.91  Aligned_cols=232  Identities=13%  Similarity=0.097  Sum_probs=179.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+.+|.++++++|++..++..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            33456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH---------------HHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV---------------SQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ...|++++|++.+++++..+|+...........               ....+.+.++....      ..       ...
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~------~~-------al~  164 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF------LA-------AVR  164 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHH------HH-------HHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHH------HH-------HHH
Confidence            999999999999999999999865432211111               11122222232211      00       001


Q ss_pred             hhhhcC--chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc
Q 024419          151 MSEKYG--AEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT  218 (268)
Q Consensus       151 ~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  218 (268)
                      +.+...  ......+.+....+++++|+..+++++..+|.          ++..+|++++|+..|++++.++|.......
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  244 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  244 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence            111222  22445566777889999999999999998886          577889999999999999999887643332


Q ss_pred             -hhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419          219 -HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ  251 (268)
Q Consensus       219 -~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~  251 (268)
                       .|.++...|++  |...|++|+ +++|++..++..
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~  279 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGE  279 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HhCCcChhhhhh
Confidence             78888888888  999999999 999998765543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=181.69  Aligned_cols=245  Identities=16%  Similarity=0.180  Sum_probs=151.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----------
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-----------   72 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------   72 (268)
                      |.++.++..+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++..+|           
T Consensus        30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence            555666666666666666666666666666666666666666666666666666666665555444332           


Q ss_pred             ---------------------------------------------------------CCHHHHHHHHHHHHHccCHHHHH
Q 024419           73 ---------------------------------------------------------QWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        73 ---------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                                                                               +++.++..+|.++...|++++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence                                                                     33445555566666666666667


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HH--------------hhhHHHHHHH--hhhh
Q 024419           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DM--------------VQHLDEFKSE--MSEK  154 (268)
Q Consensus        96 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--------------~~~~~~~~~~--~~~~  154 (268)
                      ..++++++++|+++.++..+|.++...+++++|..........     ..              ...+..+...  +.+.
T Consensus       190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  269 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            7777777777777777777777777777766665442211000     00              0001111111  1112


Q ss_pred             cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHH
Q 024419          155 YGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCF  223 (268)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~  223 (268)
                      ....+...+.+....+++++|+..+.++....|.          ++...|++++|+..|++++.++|....... .|.++
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            2223344455555667777777777776666654          466778899999999999998886532222 66777


Q ss_pred             HHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419          224 QFLRQY--ADDSFSSAACLVAPKSIISY  249 (268)
Q Consensus       224 ~~~~~~--a~~~~~ka~~~~~p~~~~~~  249 (268)
                      ...|++  |.+.|++|+ +++|++..++
T Consensus       350 ~~~g~~~~A~~~~~~al-~l~P~~~~a~  376 (388)
T d1w3ba_         350 QQQGKLQEALMHYKEAI-RISPTFADAY  376 (388)
T ss_dssp             HTTTCCHHHHHHHHHHH-TTCTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHH-HhCCCCHHHH
Confidence            777766  999999999 9999875543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.2e-24  Score=166.47  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=118.5

Q ss_pred             CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      ..|..+.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  129 (268)
                      |.++..+|++++|+..|+++++.+|++......++......+..+.+.
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence            999999999999999999999999999988887777666665544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-23  Score=171.39  Aligned_cols=198  Identities=14%  Similarity=0.158  Sum_probs=175.1

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+..+..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.....+..+|
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (268)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (268)
                      .++...|++++|+..|+++++++|+++.++..+|.++...+++++|......  ...           ..+.........
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~-----------~~~~~~~~~~~l  311 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT--ALR-----------LCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH--HHH-----------HCTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh--hhc-----------cCCccchhhhHH
Confidence            9999999999999999999999999999999999999999999999766321  111           122222334445


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          163 HVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       163 ~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                      +.++...+++++|+..|+++++++|+          ++..+|++++|+..|++++.++|.+
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            55666788999999999999999987          5778899999999999999999875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-22  Score=162.86  Aligned_cols=225  Identities=12%  Similarity=0.038  Sum_probs=174.9

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|...+++..+|.++...+.+++|+..+++|++++|++..+|.++|.++..+|. +++|+..++++++++|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            578889999999999999999999999999999999999999999999999874 9999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (268)
                      |.++..+|++++|++.+.++++++|++..+|..+|.++...+++++|....  ...+...+.           ....+..
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~--~~al~~~p~-----------n~~a~~~  185 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLKEDVR-----------NNSVWNQ  185 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHHHCTT-----------CHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHCCc-----------cHHHHHH
Confidence            999999999999999999999999999999999999999999999986653  222222221           1122222


Q ss_pred             HHHHH------HHHHHHHHHHHhhhhhhhchhH---HHH------HhhhhhhhHhhhhHHhcCCccccCccc---hhHHH
Q 024419          162 KHVFS------FVVETMETAVKSWHETSKVDAK---VYF------LLDKEKTDTEKYAPIVNVDKAFESPHT---HGSCF  223 (268)
Q Consensus       162 ~~~~~------~~~~~~~~A~~~~~~~~~~~~~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~  223 (268)
                      ++.+.      ...+.+++|+..+.+++.++|.   ++.      ......++.+.+..++.+.|.......   .+.++
T Consensus       186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            22221      1246688999999999999997   222      123457788888889888776533222   22222


Q ss_pred             HHHH--HH--HHHHHHHHhhhh
Q 024419          224 QFLR--QY--ADDSFSSAACLV  241 (268)
Q Consensus       224 ~~~~--~~--a~~~~~ka~~~~  241 (268)
                      ....  ..  +.+.+++|+ .+
T Consensus       266 ~~~~~~~~~~~~~~~~ka~-~l  286 (315)
T d2h6fa1         266 EDMLENQCDNKEDILNKAL-EL  286 (315)
T ss_dssp             HHHHHTTCSSHHHHHHHHH-HH
T ss_pred             HHHHhcCHHHHHHHHHHHH-HH
Confidence            2221  11  667777776 54

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=139.52  Aligned_cols=114  Identities=32%  Similarity=0.574  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      .+..+...|+.++..|+|++|+..|+++++.+|+++.+|.++|.||..+|++++|+..|.++++++|+++.+|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      ..+|++++|+..|+++++++|+++.++..++.+.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999988874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-21  Score=140.56  Aligned_cols=120  Identities=30%  Similarity=0.549  Sum_probs=113.8

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   84 (268)
                      ..++.+..+|+.++..|+|++|+..|+++++++|+++.+|+++|.|+..+|++++|+.+|+++++++|+++.+|..+|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      +..+|++++|+..|++++.++|+++.++..++.+....+.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887655433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.8e-21  Score=142.72  Aligned_cols=107  Identities=31%  Similarity=0.449  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      +++.+...|+.++..|+|++|+..|++++.++|.++.+|.++|.||..+|++++|+.+|+++++++|+++.+|+.+|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      ..+|++++|+..|+++++++|++...+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            999999999999999999998765443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.2e-20  Score=149.64  Aligned_cols=198  Identities=13%  Similarity=0.079  Sum_probs=154.8

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH----
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY----   78 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----   78 (268)
                      .|.++.++..+|.++...|++++|+..|.++++++|++..++..+|.++..+|++++|++.+++++..+|......    
T Consensus        49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  128 (323)
T d1fcha_          49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  128 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhh
Confidence            6889999999999999999999999999999999999999999999999999999999999999999988743221    


Q ss_pred             -----------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHH
Q 024419           79 -----------FRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD  145 (268)
Q Consensus        79 -----------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  145 (268)
                                 ......+...+.+.+|+..|.++++++|+.  +.++..+|.++...|++++|+....  ..+.      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~------  200 (323)
T d1fcha_         129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT--AALS------  200 (323)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH------
T ss_pred             hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccc--cccc------
Confidence                       112223345567788888888888888764  5677888888888888888866531  1111      


Q ss_pred             HHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                           ..+.....+...|.++...+++++|+..|.++++++|.          +|..+|++++|+..|++++.++|..
T Consensus       201 -----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         201 -----VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             -----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             -----cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence                 22223334555666777788888888888888888875          5677888888888888888886654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-19  Score=133.32  Aligned_cols=123  Identities=22%  Similarity=0.331  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      .+..+...|+.++..|+|++|+..|++++...|..               ..++.++|.||.++|++++|+..++++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            36678899999999999999999999999998764               366788999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+.....
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877666544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.5e-20  Score=146.98  Aligned_cols=112  Identities=17%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDP----SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS   96 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~   96 (268)
                      .+.+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356788888899887543    4567999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      .|+++++++|+++.++..+|.++..+|++++|....
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  128 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  128 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999997653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.84  E-value=1.5e-19  Score=130.20  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=109.7

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------PTLFSNRAAAFLHLVKLNKALADAETTI   68 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   68 (268)
                      ..+..+...|+.++..|+|.+|+..|++++...|..                ..++.++|.||+++|++++|+..+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            345678899999999999999999999999886643                2468899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      .++|.++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+...+++
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888766554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.83  E-value=5e-19  Score=129.45  Aligned_cols=124  Identities=26%  Similarity=0.431  Sum_probs=112.9

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTIS   69 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   69 (268)
                      ..+..+...|+.++..|+|.+|+..|++|+...|..               ..++.++|.||..+|++++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            457788999999999999999999999999865442               35688999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        70 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999998777666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.4e-20  Score=149.41  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=117.1

Q ss_pred             chHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      +|.+..++..+|.++...| ++++|+..++++++.+|++..+|.++|.++..+|++++|+..+.++++++|++..+|..+
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            6899999999999999976 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (268)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  124 (268)
                      |.++...|++++|++.|+++++++|++..+|..++.++...+.
T Consensus       153 ~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999998776544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.7e-20  Score=151.21  Aligned_cols=225  Identities=9%  Similarity=0.004  Sum_probs=155.8

Q ss_pred             chHhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHhh
Q 024419            3 AEAEEMSLKDKGNEFFKA----------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISL   70 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~   70 (268)
                      .|++..+|..++..+...          |++.+|+.+++++++.+|++..+|..+|.++...++  +++|+..+.+++..
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            678888887777665543          458999999999999999999999999999988875  89999999999999


Q ss_pred             CCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419           71 NPQWEKGY-FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (268)
Q Consensus        71 ~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (268)
                      +|.+..++ ...|.++...+++++|+..++++++++|++..+|..+|.++..+|++++|.....  ......+.......
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~  216 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR--LPENVLLKELELVQ  216 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS--SCHHHHHHHHHHHH
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH--HhHHhHHHHHHHHH
Confidence            99999886 5678999999999999999999999999999999999999999999888754321  11111111100000


Q ss_pred             HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-c
Q 024419          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-T  218 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~  218 (268)
                      .               ....+..+++...+.+++...|.          .+...++..+++..+..++..+|...... .
T Consensus       217 ~---------------~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  281 (334)
T d1dcea1         217 N---------------AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL  281 (334)
T ss_dssp             H---------------HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             H---------------HHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHH
Confidence            0               01112223344444444444443          34455666666666666666655432111 1


Q ss_pred             hhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          219 HGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       219 ~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                      .|.++...+++  |.+.|++|+ ++||++
T Consensus       282 l~~~~~~~~~~~eA~~~~~~ai-~ldP~~  309 (334)
T d1dcea1         282 LMRALDPLLYEKETLQYFSTLK-AVDPMR  309 (334)
T ss_dssp             HHHHHCTGGGHHHHHHHHHHHH-HHCGGG
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH-HHCccc
Confidence            44455555555  666666666 666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=4.1e-19  Score=130.05  Aligned_cols=122  Identities=24%  Similarity=0.402  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   70 (268)
                      +..+...|..++..|+|++|+..|+++++.                +|....++.++|.|+.++|++++|+..|+++|++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            456778899999999999999999999864                4556788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      +|+++.+|+++|.++..+|++++|+..|+++++++|++..+...++.+...+....++
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998777666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-18  Score=127.92  Aligned_cols=170  Identities=13%  Similarity=0.085  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ++-.++..|..+...|+|++|++.|++   +.|.++.+|+++|.||..+|++++|+++|+++++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            455678899999999999999999986   46678899999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (268)
                      ..+|++++|+..|++++...|.+..+ +..++..                   ...             .........+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~-------------------~~~-------------~~~e~~~n~a~  128 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ-------------------FKL-------------FACEVLYNIAF  128 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC-------------------CEE-------------EHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhh-------------------ccc-------------chHHHHHHHHH
Confidence            99999999999999999887766321 0000000                   000             00011223444


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhHHhcCCcc
Q 024419          165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKA  212 (268)
Q Consensus       165 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  212 (268)
                      .+..++++++|+..+.+++.+.|..  .....+.|+..+.+....+|.
T Consensus       129 ~~~~~~~~~~A~~~l~~A~~~~~~~--~~~~~~~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         129 MYAKKEEWKKAEEQLALATSMKSEP--RHSKIDKAMECVWKQKLYEPV  174 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSG--GGGHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhhhCCcc
Confidence            4555677777777777777666552  234456666666665555553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3e-18  Score=119.43  Aligned_cols=113  Identities=26%  Similarity=0.377  Sum_probs=101.1

Q ss_pred             HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-------HH
Q 024419            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------KG   77 (268)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~   77 (268)
                      ..+..+..+|+.++..|+|++|+.+|+++++++|+++.++.++|.||..+|++++|+..++++++++|++.       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999998764       46


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (268)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  118 (268)
                      +..+|.++..++++++|+..|++++..+|+ +.....+..+
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            777888889999999999999999999875 5555555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.6e-19  Score=120.50  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q 024419           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQW--EKGYFRKGCIL   85 (268)
Q Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~   85 (268)
                      -.+++.+...+++++|.+.|++++..+|.++.+++++|.|+.+.+   ++++|+..+++++..+|.+  +.+++.+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            357788899999999999999999999999999999999998754   5567999999999998765  56899999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      ..+|++++|+.+|+++++++|++..+...++.+....
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888776554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.77  E-value=3.1e-18  Score=116.48  Aligned_cols=96  Identities=14%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ....+.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHH
Q 024419           87 AMEQYDDALSAFQTAL  102 (268)
Q Consensus        87 ~~~~~~~A~~~~~~~l  102 (268)
                      ..|++++|++.+++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=5.9e-18  Score=120.41  Aligned_cols=113  Identities=15%  Similarity=0.242  Sum_probs=101.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----------VKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus        16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      .+.+.+.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            345667899999999999999999999999999999855          4568999999999999999999999999999


Q ss_pred             HHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           86 EAMEQ-----------YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        86 ~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      ..+|+           |++|++.|+++++++|++..++..|+.+....+.+.++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88764           79999999999999999999999999988777666655

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.1e-18  Score=137.53  Aligned_cols=218  Identities=12%  Similarity=0.057  Sum_probs=173.8

Q ss_pred             HHcCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           18 FKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus        18 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...+. .++|++.++++++.+|++..+|..++.++...+.          +.+|+.+++++++.+|++..+|..+|.++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            34444 4899999999999999999999988888766544          789999999999999999999999999998


Q ss_pred             HccC--HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419           87 AMEQ--YDDALSAFQTALQYNPQSAEVSR-KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (268)
Q Consensus        87 ~~~~--~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (268)
                      ..++  +++|+..++++++++|.+..++. ..+.++...+.++.|.....  ..+..           .+.....+..++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~--~~i~~-----------~p~~~~a~~~l~  185 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD--SLITR-----------NFSNYSSWHYRS  185 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH--TTTTT-----------TCCCHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHH--HHHHc-----------CCCCHHHHHHHH
Confidence            8875  89999999999999999998864 66778877888888865421  11111           222333456667


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhH------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHH
Q 024419          164 VFSFVVETMETAVKSWHETSKVDAK------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSF  234 (268)
Q Consensus       164 ~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~  234 (268)
                      .+...++++++|+..+.+++.+.|.      .+..++....+...|.+++..+|....... .+..+...+++  |...|
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  265 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKEL  265 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence            7777888888898888888888886      244567888999999999999876644443 78888888888  99999


Q ss_pred             HHHhhhhCCCCcccc
Q 024419          235 SSAACLVAPKSIISY  249 (268)
Q Consensus       235 ~ka~~~~~p~~~~~~  249 (268)
                      .+++ +.+|++..++
T Consensus       266 ~~~~-~~~p~~~~~~  279 (334)
T d1dcea1         266 QELE-PENKWCLLTI  279 (334)
T ss_dssp             HHHC-TTCHHHHHHH
T ss_pred             HHHH-hhCchHHHHH
Confidence            9999 9999875443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-16  Score=117.41  Aligned_cols=105  Identities=12%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------   74 (268)
                      |.++.+++++|.+++..|++++|+..|++|++++|+++.+|+++|.|+..+|++++|+..|++++...|.+         
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~  112 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG  112 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999876543         


Q ss_pred             -------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419           75 -------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (268)
Q Consensus        75 -------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  108 (268)
                             ..+++++|.++...|++++|++.+.+++.+.|+.
T Consensus       113 ~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                   4778999999999999999999999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.68  E-value=8.7e-16  Score=104.09  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      ..++.+|.++.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHH
Q 024419          122 AKDKKRAQEV  131 (268)
Q Consensus       122 ~~~~~~a~~~  131 (268)
                      .|++++|.+.
T Consensus        97 ~g~~~~A~~~  106 (112)
T d1hxia_          97 EHNANAALAS  106 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999766

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=9.5e-15  Score=109.07  Aligned_cols=93  Identities=17%  Similarity=0.099  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      ++..+...|.+++..|+|++|+..|++++.++|+++.+|.++|.+|...|++++|+..|+++++++|+++.+|..+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHH
Q 024419          120 QLAKDKKRAQEVE  132 (268)
Q Consensus       120 ~~~~~~~~a~~~~  132 (268)
                      ..+|++++|....
T Consensus        83 ~~l~~~~~A~~~~   95 (201)
T d2c2la1          83 LEMESYDEAIANL   95 (201)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH
Confidence            9999999997653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-15  Score=106.20  Aligned_cols=84  Identities=11%  Similarity=0.090  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      ..+.++|.+++..|+|++|+.+|++++.++|+++.++.++|.+|..+|+|++|+..++++++++|+++..+..++.++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999998777777666655


Q ss_pred             HHHH
Q 024419          122 AKDK  125 (268)
Q Consensus       122 ~~~~  125 (268)
                      +|..
T Consensus        85 lg~~   88 (128)
T d1elra_          85 IGNS   88 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=4.7e-16  Score=123.44  Aligned_cols=176  Identities=13%  Similarity=0.061  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------   74 (268)
                      ++.+...|+.+...|+|++|++.|.+++.+.+      ..+.++.++|.||..+|++++|++.|++++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            56788999999999999999999999999732      235789999999999999999999999999986654      


Q ss_pred             HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419           75 EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF  147 (268)
Q Consensus        75 ~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (268)
                      ..++..+|.++.. .|++++|++.|++++++.+..      ..++..+|.++..+|++++|......  .+...+...  
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~--~~~~~~~~~--  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK--LIKSSMGNR--  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHTTSSCT--
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH--HHHhCccch--
Confidence            5778899988865 699999999999999875432      45688999999999999999776321  011000000  


Q ss_pred             HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                        .............+......++++.|...+.++.+++|.
T Consensus       193 --~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         193 --LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             --TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             --hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence              000000111223334445566777777777777777664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=102.48  Aligned_cols=90  Identities=12%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (268)
Q Consensus        43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  122 (268)
                      -+...|..++..|++++|+..|+++|+.+|+++.+|..+|.++..+|++++|+..+.++++++|+++.+|..+|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHH
Q 024419          123 KDKKRAQEVE  132 (268)
Q Consensus       123 ~~~~~a~~~~  132 (268)
                      |++++|+...
T Consensus        85 ~~~~~A~~~~   94 (117)
T d1elwa_          85 NRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999997653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-14  Score=104.38  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      ..+...|..+++.|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++..++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            44667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHH
Q 024419          122 AKDKKRAQEV  131 (268)
Q Consensus       122 ~~~~~~a~~~  131 (268)
                      +|++++|...
T Consensus        91 ~g~~~eA~~~  100 (159)
T d1a17a_          91 LGKFRAALRD  100 (159)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999999765

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=4e-15  Score=117.99  Aligned_cols=173  Identities=11%  Similarity=0.014  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccCHHHHH
Q 024419           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP------QWEKGYFRKGCILEAMEQYDDAL   95 (268)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~   95 (268)
                      +|++|.++|.+              .|.+|..+++|++|+++|.+++.+.+      ....++..+|.+|..+|++++|+
T Consensus        32 ~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          32 KFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            46777766655              48899999999999999999999732      23578999999999999999999


Q ss_pred             HHHHHHHhhCCCC------HHHHHHHHHHHHH-HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH
Q 024419           96 SAFQTALQYNPQS------AEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (268)
Q Consensus        96 ~~~~~~l~~~p~~------~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (268)
                      +.|++++++.+..      ..++..++.++.. .+++++|++.....  +.......     ............+.++..
T Consensus        98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A--~~l~~~~~-----~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_          98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA--GEWYAQDQ-----SVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHHHHHTT-----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH--HHHHHhcC-----chhhhhhHHHHHHHHHHH
Confidence            9999999987655      5677888887755 58888887664211  11111000     001122334555667778


Q ss_pred             HHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCCccccC
Q 024419          169 VETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAFES  215 (268)
Q Consensus       169 ~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~  215 (268)
                      ++++++|+..|.+++...+.                 ++...++...|...+.+++.++|.+..
T Consensus       171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            89999999999998776543                 244678999999999999999987743

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.60  E-value=3.3e-15  Score=107.42  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-   73 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-   73 (268)
                      +..++..|..++..|+|++|+..|+++++++|+.            +.+|.++|.||..+|++++|+..+++++.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            4445566999999999999999999999998764            367999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419           74 ----------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (268)
Q Consensus        74 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  109 (268)
                                ...+++++|.+|..+|++++|+..|++++++.|+..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      245789999999999999999999999999977553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1e-14  Score=117.35  Aligned_cols=241  Identities=12%  Similarity=0.021  Sum_probs=165.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----   74 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----   74 (268)
                      +.+++....+|.+++..|++++|+..++++++..|.+     ..++..+|.++..+|++++|+..|++++.+.|..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            3567788889999999999999999999999999987     3578899999999999999999999999875532    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH------
Q 024419           75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNV------  138 (268)
Q Consensus        75 --~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------  138 (268)
                        ..++..++.++...|++..|...+.+++.+.+.        ....+..++.++...++++.+..........      
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence              467888999999999999999999999876432        2346777888888888888776543211000      


Q ss_pred             ----HHhh--------------hHHHHH--HHhhhhcC-------chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---
Q 024419          139 ----DMVQ--------------HLDEFK--SEMSEKYG-------AEECWKHVFSFVVETMETAVKSWHETSKVDAK---  188 (268)
Q Consensus       139 ----~~~~--------------~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---  188 (268)
                          ....              ....+.  ..+.....       ......+.+....+.+++|...+.+++...|.   
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  248 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH  248 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence                0000              000000  00000111       11122333455567777888888877665543   


Q ss_pred             -----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419          189 -----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (268)
Q Consensus       189 -----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~  245 (268)
                                 ++...|++.+|...++.++.........+       ..|.++...|++  |.+.|++|+ .+.+..
T Consensus       249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al-~l~~~~  324 (366)
T d1hz4a_         249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL-KLANRT  324 (366)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhhhc
Confidence                       46677888888888888876532221111       145566666666  888888888 776643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=1e-14  Score=103.38  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=98.9

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM----------EQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (268)
Q Consensus        50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  119 (268)
                      .+.+++.|++|+..|+++++++|+++.+++.+|.++...          +.+++|+..|+++++++|+++.++..+|.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            356778899999999999999999999999999999854          5568999999999999999999999999998


Q ss_pred             HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---HHHHhhhh
Q 024419          120 QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKE  196 (268)
Q Consensus       120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~  196 (268)
                      ..+|.....                                    .....+.+++|+..|.+++.++|.   +...++..
T Consensus        86 ~~~g~~~~~------------------------------------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          86 TSFAFLTPD------------------------------------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHCCC------------------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHcccchhh------------------------------------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            776643211                                    112246688899999999999987   55567777


Q ss_pred             hhhHhhhhHHh
Q 024419          197 KTDTEKYAPIV  207 (268)
Q Consensus       197 ~~a~~~~~~~~  207 (268)
                      .++.+.+..+.
T Consensus       130 ~ka~~~~~e~~  140 (145)
T d1zu2a1         130 AKAPQLHAEAY  140 (145)
T ss_dssp             HTHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=94.68  Aligned_cols=80  Identities=15%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   79 (268)
                      ++.++.+|.+++..|+|.+|+..|++|++..|.+       +.++.++|.|+.++|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4556777777777777777777777777765433       456667777777777777777777777777777777666


Q ss_pred             HHHHHHH
Q 024419           80 RKGCILE   86 (268)
Q Consensus        80 ~la~~~~   86 (268)
                      +++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=7.7e-14  Score=101.45  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=86.0

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      .|..+..+.++|.++...|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHH
Q 024419           83 CILEAMEQYDDA   94 (268)
Q Consensus        83 ~~~~~~~~~~~A   94 (268)
                      .+........++
T Consensus       153 ~~~~~l~~~~~~  164 (169)
T d1ihga1         153 KVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998877766554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.7e-14  Score=91.26  Aligned_cols=83  Identities=8%  Similarity=-0.048  Sum_probs=75.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  112 (268)
                      +++-.+.+|.+++..|+|++|+..|++|+++.|.+       +.++.++|.++...|++++|+..|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            45667899999999999999999999999986543       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 024419          113 RKIKRVSQLA  122 (268)
Q Consensus       113 ~~l~~~~~~~  122 (268)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998876554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.2e-12  Score=104.87  Aligned_cols=208  Identities=12%  Similarity=0.062  Sum_probs=145.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------   73 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------   73 (268)
                      ...++..+|.+++..|++++|+..|++++...|..      ..++..++.++...|++..|+..+.+++.+.+.      
T Consensus        50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~  129 (366)
T d1hz4a_          50 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  129 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh
Confidence            45688899999999999999999999999875533      467888999999999999999999999876322      


Q ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHhHHHHhhh--------hhH
Q 024419           74 --WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIR--------SNV  138 (268)
Q Consensus        74 --~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~  138 (268)
                        ....+..+|.++...|+++.+...+.+++...+..     ..++...+..+...+....+.......        ...
T Consensus       130 ~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  209 (366)
T d1hz4a_         130 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS  209 (366)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence              23567889999999999999999999999887654     345566666666666555554331100        000


Q ss_pred             HHhhhHHHHHHHhhhhcC------------------------chhhhHHHHHHHHHHHHHHHHhhhhhhhch------hH
Q 024419          139 DMVQHLDEFKSEMSEKYG------------------------AEECWKHVFSFVVETMETAVKSWHETSKVD------AK  188 (268)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~  188 (268)
                      ............+....+                        ......+..+...+++++|+..+++++...      |.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            000000000000100000                        011223455667888999999999876443      22


Q ss_pred             ----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419          189 ----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (268)
Q Consensus       189 ----------~~~~~~~~~~a~~~~~~~~~~~~~~  213 (268)
                                +|...|+.++|.+.+++++.+.+..
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence                      5788999999999999999877643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.4e-13  Score=96.22  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...+.++|.+++..|+|++|+.++++++.++|+++.+++.+|.|+..+|++++|+.+|+++++++|+++.+...++.+..
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HccCHHHH
Q 024419           87 AMEQYDDA   94 (268)
Q Consensus        87 ~~~~~~~A   94 (268)
                      ..++..+.
T Consensus       142 ~~~~~~~~  149 (170)
T d1p5qa1         142 RIRRQLAR  149 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=8.9e-13  Score=95.61  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ....+.++|.+++..|++++|+..+++++.++|++..+++.+|.|+..+|++++|+.+|.+++.++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHccCHHH-HHHHHHHHH
Q 024419           86 EAMEQYDD-ALSAFQTAL  102 (268)
Q Consensus        86 ~~~~~~~~-A~~~~~~~l  102 (268)
                      ...+++.+ ..+.|.+.+
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            88776654 344444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=5.7e-13  Score=95.11  Aligned_cols=84  Identities=17%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   86 (268)
                      ...+.++|.+++..|++++|+..+++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             HccC
Q 024419           87 AMEQ   90 (268)
Q Consensus        87 ~~~~   90 (268)
                      ++++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.7e-13  Score=113.68  Aligned_cols=118  Identities=7%  Similarity=-0.087  Sum_probs=85.9

Q ss_pred             hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   83 (268)
                      |.+...+..+|..+...|++++|+..+.+++..+|  ..++.++|.++..+|++++|+.+|++|+.++|++..+|.++|.
T Consensus       117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI  194 (497)
T ss_dssp             --------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred             hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            56677788889999999999999999999988776  4688899999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      ++...|++.+|+.+|.+++..+|.++.++.+|+.++....
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=3.5e-11  Score=95.63  Aligned_cols=111  Identities=17%  Similarity=0.042  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQ-DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCILEAMEQYDDALSAF   98 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~   98 (268)
                      +..++|...|+++++. .|.+...|...+..+...|+++.|...|++++...|.+. .+|..++......|+++.|++.|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3468899999999975 788899999999999999999999999999999999764 57899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-HHHHHHhHHH
Q 024419           99 QTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEV  131 (268)
Q Consensus        99 ~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~a~~~  131 (268)
                      +++++..|.+...+...+..... .++.+.|..+
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            99999999999988877765433 2445555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=2.4e-11  Score=88.66  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------------HHHHHHHHHHHHcCChHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------------TLFSNRAAAFLHLVKLNKALAD   63 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~A~~~   63 (268)
                      ..+.+...|..+...|++++|++.|.+|+.+.++..                      .++.++|.++...|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            456788999999999999999999999999977542                      5688899999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419           64 AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (268)
Q Consensus        64 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (268)
                      +++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.8e-11  Score=94.83  Aligned_cols=130  Identities=7%  Similarity=-0.012  Sum_probs=118.7

Q ss_pred             chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      .|.+...+...+......|+++.|...|++++...|.+. .+|...+......|+++.|++.|.++++..|.....+...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            466777888999999999999999999999999999875 5799999999999999999999999999999999999999


Q ss_pred             HHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           82 GCILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        82 a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      |.... ..|+.+.|...|++++..+|+++..|...+......|+.++|..+.
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~f  226 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  226 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHH
Confidence            98754 4689999999999999999999999999999999999998887664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2e-12  Score=88.32  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=76.1

Q ss_pred             chHhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 024419            3 AEAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG   77 (268)
Q Consensus         3 ~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   77 (268)
                      .|.++++++++|.+++..+   ++++|+..|++++..+|.+  ..+++++|.+|..+|++++|+.+|+++++++|++..+
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            5788999999999998755   5567999999999998866  4589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 024419           78 YFRKGCILEAM   88 (268)
Q Consensus        78 ~~~la~~~~~~   88 (268)
                      ...++.+..+.
T Consensus       109 ~~l~~~I~~~~  119 (122)
T d1nzna_         109 KELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98888776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=116.75  Aligned_cols=208  Identities=7%  Similarity=-0.033  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419           25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (268)
Q Consensus        25 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  104 (268)
                      +|+++|++|+++.|+.+.++.++|.++...+++++|   |+++|..+|+...++...+.+.  ...|..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            788999999999999999999999999999998876   8889999987766543322221  22355677777777754


Q ss_pred             C--CCCHHH-HHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhh
Q 024419          105 N--PQSAEV-SRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (268)
Q Consensus       105 ~--p~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  181 (268)
                      .  |+.... ...++.+....+.++.++....  .....           ...........|......++.+.|+..+.+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~--~~~~l-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  145 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELC--TVFNV-----------DLPCRVKSSQLGIISNKQTHTSAIVKPQSS  145 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT--C------------------------------------------CCH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC-----------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence            4  222222 2223445555666666643321  11111           111122233344445556677777777777


Q ss_pred             hhhchhH--------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCccccc
Q 024419          182 TSKVDAK--------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYP  250 (268)
Q Consensus       182 ~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~  250 (268)
                      ++..+|.        ++...+++++|+.+|.+++.++|.....+. +|.++...+++  |...|.+|+ .++|....++.
T Consensus       146 al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-~~~~~~~~a~~  224 (497)
T d1ya0a1         146 SCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI-AVKFPFPAAST  224 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-SSSBCCHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCHHHHH
Confidence            6666654        455667778888888888888776633333 56666666655  888888888 77776555444


Q ss_pred             c
Q 024419          251 Q  251 (268)
Q Consensus       251 ~  251 (268)
                      +
T Consensus       225 n  225 (497)
T d1ya0a1         225 N  225 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.19  E-value=1.3e-11  Score=95.73  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=101.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (268)
Q Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~   93 (268)
                      +...+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419           94 ALSAFQTALQ-YNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus        94 A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                      +...+.+... .+|.....+...+.+....|+.++|.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~  121 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL  121 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            7665554433 3455566677778888888889888765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.08  E-value=4.4e-10  Score=79.96  Aligned_cols=88  Identities=14%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----
Q 024419           44 FSNRAAAFLHLVKLNKALADAETTISLNPQW------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----  107 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----  107 (268)
                      ++..|..++..|+|++|+..|++++.++|+.            ..+|.++|.+|..+|++++|+..+++++++.|.    
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3445889999999999999999999998864            367899999999999999999999999987542    


Q ss_pred             -------CHHHHHHHHHHHHHHHHHHHhHHH
Q 024419          108 -------SAEVSRKIKRVSQLAKDKKRAQEV  131 (268)
Q Consensus       108 -------~~~~~~~l~~~~~~~~~~~~a~~~  131 (268)
                             ...++.++|.++..+|++++|...
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence                   134688999999999999999665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.06  E-value=2.5e-08  Score=76.81  Aligned_cols=109  Identities=16%  Similarity=0.197  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRK   81 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l   81 (268)
                      +|++++.+|..++..+++++|+++|+++.+.  +++.+++.+|.+|..    ..++..|...++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4789999999999999999999999999865  689999999999998    67999999999998765  477888999


Q ss_pred             HHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419           82 GCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (268)
Q Consensus        82 a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  120 (268)
                      |.++..    ..+.+.|...++.+....+  ..+...++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~  117 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYH  117 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccccc
Confidence            988876    4688999999999987654  455555555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.01  E-value=1.1e-09  Score=84.51  Aligned_cols=128  Identities=12%  Similarity=0.061  Sum_probs=95.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (268)
Q Consensus        49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  128 (268)
                      .-.+..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+....+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999998877777665


Q ss_pred             HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (268)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  188 (268)
                      ................            .............+++++|...+.++.+..|.
T Consensus        84 ~~~~~~~~~~~~p~~~------------~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          84 AQGAATAKVLGENEEL------------TKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             TTSCCCEECCCSCHHH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHhhhhhcccCchHH------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            3321100000000000            01112233344567888888888888777765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=1.1e-08  Score=68.22  Aligned_cols=82  Identities=9%  Similarity=-0.063  Sum_probs=72.2

Q ss_pred             ChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419           40 NPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (268)
Q Consensus        40 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  115 (268)
                      ++.+.++.|+|+.+..   +.++|+..++.+++.+|.+. ++++.+|.+|.++|+|++|+.+++++|+++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            4789999999999765   45699999999999999774 8999999999999999999999999999999999987766


Q ss_pred             HHHHHH
Q 024419          116 KRVSQL  121 (268)
Q Consensus       116 ~~~~~~  121 (268)
                      ..+...
T Consensus       114 ~~Ie~~  119 (124)
T d2pqrb1         114 SMVEDK  119 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=1.5e-08  Score=73.39  Aligned_cols=92  Identities=7%  Similarity=-0.096  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 024419           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----------------------EKGYFRKGCILEAMEQYDDALSAF   98 (268)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~   98 (268)
                      ...+...|......|++++|+..|.+++.+.|..                      ..++..++.++...|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4678889999999999999999999999987643                      257889999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           99 QTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        99 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      +++++.+|.+..+|..++.++...|+..+|...+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y  124 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAY  124 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999999999997653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=2.2e-07  Score=61.76  Aligned_cols=79  Identities=11%  Similarity=-0.045  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   82 (268)
                      +++-|+.|.++....   +.++++.+++.++..+|.+. +.++.+|.+|+++|+|++|..+++++|+++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            678899999998775   45799999999999999764 79999999999999999999999999999999988866554


Q ss_pred             HHH
Q 024419           83 CIL   85 (268)
Q Consensus        83 ~~~   85 (268)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.17  E-value=1.8e-05  Score=53.74  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 024419           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS   96 (268)
Q Consensus        21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~   96 (268)
                      .|+++|+.+|+++.+..  ++.+.+.+|.  ....++++|+..++++.+.  .++.+.+.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47899999999998774  5666777764  3457899999999999875  688999999999887    567999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHH
Q 024419           97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEV  131 (268)
Q Consensus        97 ~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~  131 (268)
                      .|+++.+.  .++.+...||.++..    ..+..+|..+
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~  117 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT  117 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHH
Confidence            99999765  678888999988765    2345555444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.12  E-value=3.6e-05  Score=58.44  Aligned_cols=112  Identities=17%  Similarity=0.173  Sum_probs=88.2

Q ss_pred             hHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 024419            4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE   75 (268)
Q Consensus         4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~   75 (268)
                      ..++++.+.+|..+..    ..++..|...+..+...  .++.+...+|.++..    ..+.+.|...++++....+  .
T Consensus        31 ~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~  106 (265)
T d1ouva_          31 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--A  106 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H
T ss_pred             CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhh--h
Confidence            3567889999999998    77999999999998865  478888999988876    4688999999999988654  5


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (268)
Q Consensus        76 ~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  121 (268)
                      .+...+|..+..    ......|...+.+...  +.+...+..++.++..
T Consensus       107 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_         107 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence            667777777775    4457777777777654  5677888888888754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.02  E-value=8.2e-05  Score=50.29  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=72.9

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccC
Q 024419           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQ   90 (268)
Q Consensus        19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~   90 (268)
                      ...++++|+..|+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            456899999999999875  689999999999987    56799999999999876  578899999999987    568


Q ss_pred             HHHHHHHHHHHHhhCC
Q 024419           91 YDDALSAFQTALQYNP  106 (268)
Q Consensus        91 ~~~A~~~~~~~l~~~p  106 (268)
                      +++|+..|+++.+...
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999987643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.79  E-value=0.09  Score=30.85  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419            7 EMSLKDKGNEFFKAGNYLKAAALYTQAI   34 (268)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al   34 (268)
                      +..+-.+|..+...|+|++||++.++|.
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455566666677777777776665554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=4.2  Score=32.07  Aligned_cols=52  Identities=8%  Similarity=-0.056  Sum_probs=27.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419           17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI   68 (268)
Q Consensus        17 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   68 (268)
                      .+..+++..+...+...-..........+.+|..+..+|+.++|...|..+.
T Consensus       295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            3444566665555544322222334555666666666666666666665554

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.74  E-value=0.71  Score=37.60  Aligned_cols=46  Identities=17%  Similarity=0.265  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 024419            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL   54 (268)
Q Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~   54 (268)
                      .+..+|...+..|+|..|.+..+.++..+|++..+...++.+|.++
T Consensus       432 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l  477 (505)
T d2cfua2         432 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL  477 (505)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3444444445555555555555555555555554444444444444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=1.7  Score=34.50  Aligned_cols=122  Identities=6%  Similarity=-0.129  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF----LHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (268)
Q Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   85 (268)
                      ....|..-....+.+.|...+.......+.+...+.......    ...+..+.|............+.......++ ..
T Consensus       217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~a  295 (450)
T d1qsaa1         217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MA  295 (450)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HH
Confidence            344444455556777787777777666655544333332222    2335556666666555544333332222333 34


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (268)
Q Consensus        86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  132 (268)
                      ...+++..+...+...-......+...+-+|..+...|+.+.|....
T Consensus       296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence            45567777766665543322233556677777777777777776553

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.82  E-value=1.1  Score=26.02  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHH
Q 024419           44 FSNRAAAFLHLVKLNKALADAETT   67 (268)
Q Consensus        44 ~~~~a~~~~~~~~~~~A~~~~~~a   67 (268)
                      +-.+|.-+...|.|++||++.+++
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555666666666666665444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.18  E-value=0.68  Score=28.07  Aligned_cols=14  Identities=14%  Similarity=0.074  Sum_probs=6.1

Q ss_pred             HcCChHHHHHHHHH
Q 024419           53 HLVKLNKALADAET   66 (268)
Q Consensus        53 ~~~~~~~A~~~~~~   66 (268)
                      ..|+|++|+.+|.+
T Consensus        27 ~~g~y~eA~~~Y~~   40 (93)
T d1wfda_          27 AESRYQQALVCYQE   40 (93)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            34444444444433

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.68  E-value=1.2  Score=26.85  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ   36 (268)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   36 (268)
                      .+-.+...|-.+-..|+|++|+.+|..+++.
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556677888888888888888888777653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.78  E-value=3.1  Score=31.62  Aligned_cols=43  Identities=5%  Similarity=0.015  Sum_probs=23.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419           45 SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (268)
Q Consensus        45 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   87 (268)
                      ...-..|...|.+++.+..++.++...+.+...+..++.+|.+
T Consensus       103 ~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         103 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.74  E-value=9.6  Score=28.76  Aligned_cols=49  Identities=6%  Similarity=0.028  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (268)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  123 (268)
                      ++-....-..|...|.+++.+..++.++..++.+...+..++.++...+
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            3444556677788899999999999999988999999888888876543