Citrus Sinensis ID: 024436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Secondary Structure (PSIPRED)
ccccEEEEEEccccEEEEEEccccEEEEEccccEEEEEEEEccccccccEEEccccEEEEcccEEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEEccccccEEEEcccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccEEcEEEEEEEccEEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHEEEEccccccEEEEEEccccccEEccccccEEEccccccccEEEEEEccccEEEEEcccHHHHHHHHHHccccccEEEEEccccccEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEHHEccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHccccHHHHHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEgaigpeslafdalgegpytgvsdgriiKWHQDQRRWLHfartspnrnhiSVILsgdktgrlmkydpatKQVTVLLGnlsfpngvalsedgnYILLAETTSCRILRYWLKTSKAGTIEIVAqlpgfpdnikrsprggfwvgihSRRKGISKLVLSFpwignvliklPIDIVKIHSSLVKlsgnggmamrisEQGNVLEILEEIGRKMWRSISEVEekdgnlwigsvnmpyaglynyss
Flexible Loop (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHfartspnrnhisVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVaqlpgfpdnikrsPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVeekdgnlwigsvnmpyaglynyss
Low Complexity Region (SEG)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Disordered region (IsUnstruct)
*****SFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN***
Disordered Region (DISOPRED)
**SSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS*
Disordered Region (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Disordered Region (DISPRO)
**SSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.742	0.478	0.337	3e-27
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.735	0.473	0.336	2e-26
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.742	0.529	0.319	1e-25
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.742	0.479	0.314	2e-25
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.742	0.483	0.319	3e-25
Q803F5	415	Adipocyte plasma membrane	yes	no	0.735	0.474	0.303	2e-23
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.761	0.491	0.312	4e-23
P68175	344	Strictosidine synthase OS	N/A	no	0.626	0.488	0.314	5e-20
P68174	342	Strictosidine synthase (F	N/A	no	0.626	0.491	0.314	5e-20
P94111	335	Strictosidine synthase 1	no	no	0.597	0.477	0.360	1e-19

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 17/216 (7%)

Query: 50  TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
           T   DGR I +     +W         R+++ +++ G   GRL++YD  T++V VLL  L
Sbjct: 204 TVTQDGRKIYFTDSSSKWQR-------RDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQL 256

Query: 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
            FPNGV LS   +++L+AETT  RI R ++    K G    V  +PGFPDNI+ S  GG+
Sbjct: 257 RFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGY 316

Query: 169 WVGIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224
           WVG+ + R      +L F    PWI  ++ KL         +++K      + + +S+ G
Sbjct: 317 WVGMSTIRPNPGFSMLDFLSERPWIKRMIFKL-----FSQETVMKFVPRYSLVLELSDSG 371

Query: 225 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
                L +    +   ISEV E DG+L++GS   P+
Sbjct: 372 AFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPF 407

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Homo sapiens (taxid: 9606)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 17/214 (7%)

Query: 52  VSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF 111
             DGR + +     RW         R+++ +I+     GR+++YD  TK+VTVL+ NL F
Sbjct: 206 TQDGRKVYFTDSSSRWQR-------RDYLHLIMEATADGRVLEYDTETKEVTVLMENLRF 258

Query: 112 PNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170
            NG+ L  D   +L+AETT  RI R  +   +K G    V  LPGFPDNI+RS  GG+WV
Sbjct: 259 ANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWV 318

Query: 171 GIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNV 226
            + + R      +L F    PWI  ++ KL    V     L+K      + + + E G  
Sbjct: 319 AMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDV-----LMKFVPRYSLVIELQESGAC 373

Query: 227 LEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
           +    +    +   +SE  E DG+L++GS   PY
Sbjct: 374 MRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPY 407

Salmo salar (taxid: 8030)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 17/216 (7%)

Query: 50  TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
           T   DGR I +     +W         R+++ +++ G   GRL++YD  TK+V VLL  L
Sbjct: 164 TITRDGRKIYFTDSSSKWQR-------RDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQL 216

Query: 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
            FPNGV LS + +++L+AET   RI R ++    K G    V  +PGFPDNI+ S  GG+
Sbjct: 217 QFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 276

Query: 169 WVGIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224
           WV   + R      +L F    P+I  ++ KL         +++K      + + +S+ G
Sbjct: 277 WVAAATIRANPGFSMLDFLSDKPFIKRMIFKL-----FSQETVMKFVPRYSLVLEVSDSG 331

Query: 225 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
                L +   ++   +SE  E DG L++GS   P+
Sbjct: 332 AFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPF 367

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 17/216 (7%)

Query: 50  TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
           T   DGR I +     +W         R+++ +++     GRL++YD  TK+V VLL  L
Sbjct: 203 TVTRDGRKIYFTDSSSKWQR-------RDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQL 255

Query: 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
            FPNGV LS + +++L+AETT  RI R ++    K G    V  +PGFPDNI+ S  GG+
Sbjct: 256 QFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 315

Query: 169 WVGIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224
           WV   + R      +L F    P+I  ++ K+         +++K      + + +S+ G
Sbjct: 316 WVAAATIRANPGFSMLDFLSDKPFIKRMIFKM-----FSQETVMKFVPRYSLVLEVSDSG 370

Query: 225 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
                L +   ++   +SE  E DG L++GS   P+
Sbjct: 371 AFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPF 406

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 17/216 (7%)

Query: 50  TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
           T   DGR I +     +W         R+++ +++ G   GRL++YD  TK+V VLL +L
Sbjct: 203 TVTRDGRKIYFTDSSSKWQR-------RDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHL 255

Query: 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
            FPNGV LS   +++L+ E    RI R+++    K G    V  LPGFPDNI+ S  GG+
Sbjct: 256 RFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGY 315

Query: 169 WVGIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224
           WV + + R      +L F    P++  V+ KL         +++K      + + +S+ G
Sbjct: 316 WVSMAAIRANPGFSMLDFLSERPFLKKVIFKL-----FSQETVMKFVPRYSLVLELSDSG 370

Query: 225 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
             L  L +   ++   +SE  E  G+L++GS   PY
Sbjct: 371 TFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPY 406

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 17/214 (7%)

Query: 52  VSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF 111
             DG+ + +     RW         R+ + +I+     GR+++YD  TK+V V++ NL F
Sbjct: 205 TQDGKKVYFTDSSSRWQR-------RDFMHLIMEATADGRVLEYDTETKEVNVMMENLRF 257

Query: 112 PNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170
           PNG+ L  D   +L+AETT  RI R  +   +K G    +  LPGFPDNI+RS  GG+WV
Sbjct: 258 PNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWV 317

Query: 171 GIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNV 226
            + + R      +L F    PW+  ++ KL         +L+K      + + +   G  
Sbjct: 318 AMSAVRPNPGFSMLDFLSQRPWLKKLIFKL-----FSQDTLLKFVPRYSLVVELQSDGTC 372

Query: 227 LEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
           +    +    +    SE  E  G+L++GS   PY
Sbjct: 373 VRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPY 406

Danio rerio (taxid: 7955)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 17/221 (7%)

Query: 50  TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
           T   DGR I +     +W         R+ + +++ G   GRL++YD  TK+V VL+  L
Sbjct: 203 TVTQDGRKIYFTDSSSKWQR-------RDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGL 255

Query: 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
            FPNGV LS   +++L+ ET   RI RY++    K G    V  +PG PDNI+ S  GG+
Sbjct: 256 RFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGY 315

Query: 169 WVGIHSRRKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224
           WV +   R      +L F    PWI  ++ KL         ++ KL     + + +SE G
Sbjct: 316 WVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKL-----LSQETVTKLLPKRSLVVELSETG 370

Query: 225 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN 265
           +      +        +SE  E +G L++GS   P+    N
Sbjct: 371 SYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLN 411

Gallus gallus (taxid: 9031)

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 48/216 (22%)

Query: 54  DGRIIKW----HQDQRRWL-HFARTS---PNRNHISVILSGDKTGRLMKYDPATKQVTVL 105
           DG   KW      DQR  + +F   S    +R    ++ + DKTGRL+KYDP+TK+ T+L
Sbjct: 143 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 202

Query: 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165
           L  L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  
Sbjct: 203 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 261

Query: 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRI 220
           G FWV                                  SS  +L GN         ++ 
Sbjct: 262 GHFWV----------------------------------SSSEELDGNMHGRVDPKGIKF 287

Query: 221 SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
            E GN+LE++            +++E DG L+IG++
Sbjct: 288 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 323

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 48/216 (22%)

Query: 54  DGRIIKW----HQDQRRWL-HFARTS---PNRNHISVILSGDKTGRLMKYDPATKQVTVL 105
           DG   KW      DQR  + +F   S    +R    ++ + DKTGRL+KYDP+TK+ T+L
Sbjct: 141 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 200

Query: 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165
           L  L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  
Sbjct: 201 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 259

Query: 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRI 220
           G FWV                                  SS  +L GN         ++ 
Sbjct: 260 GHFWV----------------------------------SSSEELDGNMHGRVDPKGIKF 285

Query: 221 SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
            E GN+LE++            +++E DG L+IG++
Sbjct: 286 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 321

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 34/194 (17%)

Query: 71  ARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT 130
           +R SP +  I++ L  D TG+L KYDP+TK VTVL+  LS   G A+S DG+++L+++ T
Sbjct: 164 SRFSPIQVLIALGLK-DATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFT 222

Query: 131 SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGIHSRRKGISKLVLSFPWI 189
              I RYW+K  KAG+ E        PDNIKR    G FWV                   
Sbjct: 223 KSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWV------------------- 263

Query: 190 GNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDG 249
            +V+ K+   IV  + S VK++ NG       E    + + ++ G  +   +SEV E +G
Sbjct: 264 ASVVNKI---IVPTNPSAVKVNSNG-------EVLQTIPLKDKFGDTL---LSEVNEFEG 310

Query: 250 NLWIGSVNMPYAGL 263
           NL+IG++  P+AG+
Sbjct: 311 NLYIGTLTGPFAGI 324

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
224089989	368	predicted protein [Populus trichocarpa]	0.697	0.508	0.664	4e-70
224139738	349	predicted protein [Populus trichocarpa]	0.701	0.538	0.645	2e-69
356504728	382	PREDICTED: adipocyte plasma membrane-ass	0.906	0.636	0.539	6e-68
449438002	378	PREDICTED: adipocyte plasma membrane-ass	0.705	0.5	0.634	2e-66
255583686	375	strictosidine synthase, putative [Ricinu	0.727	0.52	0.606	3e-66
357509505	393	Adipocyte plasma membrane-associated pro	0.888	0.605	0.509	5e-65
357509507	394	Adipocyte plasma membrane-associated pro	0.768	0.522	0.566	1e-62
388523081	376	unknown [Medicago truncatula]	0.828	0.590	0.518	9e-61
297827767	376	hypothetical protein ARALYDRAFT_483200 [	0.697	0.497	0.543	2e-55
346703755	466	hypothetical_protein [Oryza glaberrima]	0.735	0.422	0.529	7e-55

>gi|224089989|ref|XP_002308895.1| predicted protein [Populus trichocarpa] gi|222854871|gb|EEE92418.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 159/188 (84%), Gaps = 1/188 (0%)

Query: 77  RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
           R ++SV+LSGDK+GRLMKYDP  KQV VLL NL+FPNGVALS+DGN+ILLAETT CRILR
Sbjct: 180 RQYLSVVLSGDKSGRLMKYDPVNKQVRVLLSNLTFPNGVALSKDGNFILLAETTRCRILR 239

Query: 137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL 196
           YW+KTSKAGT+E+ AQL GFPDNIKRSPRGG+WVG++SRR+ +S+L+ S+PWIGNVL+KL
Sbjct: 240 YWIKTSKAGTVEVFAQLQGFPDNIKRSPRGGYWVGMNSRREKLSELLFSYPWIGNVLLKL 299

Query: 197 PIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
           P+DI  + S+L K  G+ G+A+R+SE G++LE+ E+      +SISEV EKDG LWIGS+
Sbjct: 300 PLDIAMLQSTLSKYRGS-GLAVRLSENGDILEVFEDNDGDGLKSISEVMEKDGRLWIGSI 358

Query: 257 NMPYAGLY 264
            +P+AG Y
Sbjct: 359 ALPFAGRY 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139738|ref|XP_002323253.1| predicted protein [Populus trichocarpa] gi|222867883|gb|EEF05014.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 161/189 (85%), Gaps = 1/189 (0%)

Query: 77  RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
           R+++SV+LSGDK+GRLMKYD A+KQVTVLL NL+FPNGVALS DG+++LLAETTSCRILR
Sbjct: 161 RDYLSVVLSGDKSGRLMKYDTASKQVTVLLKNLTFPNGVALSTDGSFVLLAETTSCRILR 220

Query: 137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL 196
           YW+KTSKAG +E+ AQL GFPDNIKRSPRGG+WVGI+S+R+ +S+L+ S+PWIG VL+KL
Sbjct: 221 YWIKTSKAGALEVFAQLQGFPDNIKRSPRGGYWVGINSKREKLSELLFSYPWIGKVLLKL 280

Query: 197 PIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
           P+DI K  ++L K  G GG+A+R+SE G+++E+ E+      +SISEV EKDG LWIGS+
Sbjct: 281 PLDITKFQTALAKYRG-GGLAVRLSENGDIVEVFEDRDGNRLKSISEVMEKDGKLWIGSI 339

Query: 257 NMPYAGLYN 265
           ++P+AG + 
Sbjct: 340 DLPFAGRFK 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504728|ref|XP_003521147.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Glycine max]

 Score =  263 bits (672), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 185/254 (72%), Gaps = 11/254 (4%)

Query: 16  LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTS 74
           L+I  S +G+V   + G  G  +    +  EG     ++G  +    DQR   ++F  +S
Sbjct: 125 LYIADSYKGLV---VVGPHGGTTRRLVSTIEGEPLAFTNGLDV----DQRTGAVYFTSSS 177

Query: 75  ---PNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS 131
              P RN++S+ILS DKTG LMKY+P ++QV+VLL NLS+ NGVALS+DG YIL+ ETT+
Sbjct: 178 SKYPRRNYMSLILSRDKTGMLMKYEPQSEQVSVLLKNLSYANGVALSKDGEYILIIETTT 237

Query: 132 CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN 191
           CR+LRYWL+T K GT+E+ A LPGFPDNIKRSPRGGFWVGI+SRR+ I + +LS+PWIG 
Sbjct: 238 CRVLRYWLETPKTGTLEVFADLPGFPDNIKRSPRGGFWVGIYSRREKIIQWILSYPWIGK 297

Query: 192 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNL 251
           VL++LP+DI K +S L KL  + GMA+R+SEQG++LEI+ E    + RSISEVEE+DG L
Sbjct: 298 VLLRLPLDIPKAYSYLAKLKRSNGMAIRLSEQGDILEIVNEKNGSIGRSISEVEERDGIL 357

Query: 252 WIGSVNMPYAGLYN 265
           W+GS++ P+ G YN
Sbjct: 358 WVGSIDAPFVGKYN 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438002|ref|XP_004136779.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus] gi|449511648|ref|XP_004164017.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 157/194 (80%), Gaps = 5/194 (2%)

Query: 69  HFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE 128
           H+ R    RN  S +LSGD TGRLMKYDP TKQ+++LL NLSFPNGV+LS++G+++LLAE
Sbjct: 184 HYQR----RNFASSVLSGDNTGRLMKYDPKTKQLSLLLANLSFPNGVSLSKNGDFLLLAE 239

Query: 129 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW 188
           TT CRIL+YWLKT KAG+ +++A+LPGFPDNIK S RGGFWVGIHSR++G  +L+LS PW
Sbjct: 240 TTKCRILKYWLKTVKAGSYDVIAELPGFPDNIKASRRGGFWVGIHSRKRGSLRLILSQPW 299

Query: 189 IGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK- 247
           IG VL+KLP+DI K+HS L K   NGG+ MR+SE+G V+EI+E  G   W+S SEVEE+ 
Sbjct: 300 IGKVLLKLPLDIDKVHSFLGKWIKNGGIGMRVSEEGEVMEIIEGKGDLKWKSFSEVEERE 359

Query: 248 DGNLWIGSVNMPYA 261
           DG +WIGS+N P+A
Sbjct: 360 DGVVWIGSINTPFA 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583686|ref|XP_002532597.1| strictosidine synthase, putative [Ricinus communis] gi|223527685|gb|EEF29794.1| strictosidine synthase, putative [Ricinus communis]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 160/201 (79%), Gaps = 6/201 (2%)

Query: 68  LHFARTSPN---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI 124
           L+F  +S     R +I  ILSGDK+GRL++YDP  K+V +LLGNLSFPNGVALS+DGN+I
Sbjct: 176 LYFTDSSSRYQRREYIYAILSGDKSGRLLRYDPEDKKVRILLGNLSFPNGVALSKDGNFI 235

Query: 125 LLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL 184
           L+AETT+CR+L+YW+KTSKAG +E+ AQ+PGFPDNIKRSPRGG+WV I+SRR    + VL
Sbjct: 236 LIAETTTCRVLKYWIKTSKAGILEVFAQVPGFPDNIKRSPRGGYWVAINSRRDKFLEWVL 295

Query: 185 SFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEV 244
           S PWIGN LIKLP D++KI+S L K  G  GMA+R+ E G++LE+ E+  R  ++++SEV
Sbjct: 296 SHPWIGNSLIKLPFDLMKIYSILGKYRGT-GMAVRLDENGDILEVFED--RNRFKTLSEV 352

Query: 245 EEKDGNLWIGSVNMPYAGLYN 265
            EKDG LWIGS+N+P+ G Y+
Sbjct: 353 MEKDGKLWIGSINLPFVGRYD 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509505|ref|XP_003625041.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355500056|gb|AES81259.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 181/257 (70%), Gaps = 19/257 (7%)

Query: 16  LFINSSTQGVVQYQIEGAIGPESLAF-DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS 74
           L +  ST G+ +  I  A+  + LAF ++L     TG                ++F  +S
Sbjct: 147 LVVIESTGGIARKVISHAVEGQPLAFTNSLDIDQRTGA---------------VYFTSSS 191

Query: 75  PN---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS 131
                RN++S+IL+GD +GRL+KY+P ++QV VLL NL+F NGVALS++GNYIL++ETT 
Sbjct: 192 SKYERRNYVSLILTGDSSGRLIKYEPKSEQVNVLLNNLTFANGVALSKNGNYILISETTK 251

Query: 132 CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN 191
           CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI+SRR    + +LS+PWIG 
Sbjct: 252 CRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINSRRGKFIQWMLSYPWIGK 311

Query: 192 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNL 251
            L+ LP+DI K +S L K+ G+ G+A+R+SE+G++LEI+E+      RSISEVEE+DG L
Sbjct: 312 GLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDLLEIVEDHKSGNRRSISEVEERDGVL 371

Query: 252 WIGSVNMPYAGLYNYSS 268
           W+GS+++P+   YN S 
Sbjct: 372 WVGSIDVPFVIKYNNSC 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509507|ref|XP_003625042.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355500057|gb|AES81260.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 164/210 (78%), Gaps = 4/210 (1%)

Query: 63  DQRR-WLHFARTSPN---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 118
           DQR   ++F  +S     R+++S+IL+GD +GRL+KY+P ++QV VLL NL+F NGVALS
Sbjct: 180 DQRTGAVYFTSSSSKYERRDYVSLILTGDNSGRLIKYEPKSEQVNVLLNNLTFANGVALS 239

Query: 119 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 178
           ++GNYIL++ETT CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI+SRR+ 
Sbjct: 240 KNGNYILISETTKCRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINSRREK 299

Query: 179 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW 238
           + + ++S+PWIG  L+ LP+DI K +S L K  G+ G+A+R+SE+G+VLEI+E+      
Sbjct: 300 LIQWMISYPWIGKGLVMLPLDITKTYSYLSKKKGSPGLAIRLSEEGDVLEIVEDHRSGNR 359

Query: 239 RSISEVEEKDGNLWIGSVNMPYAGLYNYSS 268
            SI+EVEE+DG LW+GS++ P+   YN S 
Sbjct: 360 SSITEVEERDGVLWVGSLDAPFVIKYNNSC 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523081|gb|AFK49602.1| unknown [Medicago truncatula]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 170/241 (70%), Gaps = 19/241 (7%)

Query: 16  LFINSSTQGVVQYQIEGAIGPESLAF-DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS 74
           L +  ST G+ +  I  A+  + LAF ++L     TG                ++F  +S
Sbjct: 147 LVVIESTGGIARKVISHAVEGQPLAFTNSLDIDQRTGA---------------VYFTSSS 191

Query: 75  PN---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS 131
                RN++S+IL+GD +GRL+KY+P ++QV VLL NL+F NGVALS++GNYIL++ETT 
Sbjct: 192 SKYERRNYVSLILTGDSSGRLIKYEPKSEQVNVLLNNLTFANGVALSKNGNYILISETTK 251

Query: 132 CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN 191
           CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI+SRR    + +LS+PWIG 
Sbjct: 252 CRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINSRRGKFIQWMLSYPWIGK 311

Query: 192 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNL 251
            L+ LP+DI K +S L K+ G+ G+A+R+SE+G++LEI+E+      RSISEVEE+DG L
Sbjct: 312 GLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDLLEIVEDHKSGNRRSISEVEERDGVL 371

Query: 252 W 252
           W
Sbjct: 372 W 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827767|ref|XP_002881766.1| hypothetical protein ARALYDRAFT_483200 [Arabidopsis lyrata subsp. lyrata] gi|297327605|gb|EFH58025.1| hypothetical protein ARALYDRAFT_483200 [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 141/195 (72%), Gaps = 8/195 (4%)

Query: 77  RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
           RN+I  ++SGD+TGRLMKYDP TK+VT LL NL+FPNGV LS++G+Y+L+ ET +CR+LR
Sbjct: 181 RNYIGAMMSGDRTGRLMKYDPDTKEVTTLLSNLAFPNGVVLSQNGDYLLVVETATCRVLR 240

Query: 137 YWLKTSKAGT-----IEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIG 190
           YWL  +          EI A+ LPGFPDNIKRSPRGGFWVG++++   ++K  +S  W+G
Sbjct: 241 YWLSATSTTCKSRENYEIFAEGLPGFPDNIKRSPRGGFWVGLNTKHSKLTKFAMSNAWLG 300

Query: 191 NVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVL-EILEEIGRKMWRSISEVEEKDG 249
              + LP+D +KIHS   K +GN GMA+R+SE   V+ E+ E      W SISEVEE+D 
Sbjct: 301 RAALGLPVDWMKIHSVWAKYNGN-GMAVRLSEDSGVISEVFEGQKGNKWISISEVEERDA 359

Query: 250 NLWIGSVNMPYAGLY 264
            LW+GSVN P+AG+Y
Sbjct: 360 TLWVGSVNTPFAGMY 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346703755|emb|CBX24423.1| hypothetical_protein [Oryza glaberrima]

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%), Gaps = 5/202 (2%)

Query: 68  LHFARTSPN---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI 124
           ++F  TS     R  ++++++GD TGRL+KYDP   +V VL+  L FPNG+A+S+DG+Y+
Sbjct: 263 IYFTETSTRFQRREFLNIVITGDNTGRLLKYDPKENKVEVLVDGLRFPNGLAMSKDGSYL 322

Query: 125 LLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL 184
           LLAETT+ +ILRYW++T KA TIE VAQLPGFPDNIK SPRGGFWVG+H++R  I++  +
Sbjct: 323 LLAETTTGKILRYWIRTLKASTIEEVAQLPGFPDNIKMSPRGGFWVGLHAKRGKIAEWSI 382

Query: 185 SFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG--RKMWRSIS 242
           S+PW+  V++KLP   ++  +S +   G   +A+R+SE G  +E +   G  RK+++SIS
Sbjct: 383 SYPWLRKVILKLPAQRIQRITSFLTGFGRQVIALRLSEDGKTIEAMSVHGDVRKLFKSIS 442

Query: 243 EVEEKDGNLWIGSVNMPYAGLY 264
           EVEEKDGNLWIGSV  P+ GLY
Sbjct: 443 EVEEKDGNLWIGSVLSPFLGLY 464

Source: Oryza glaberrima

Species: Oryza glaberrima

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.694	0.494	0.564	2e-69
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.701	0.475	0.423	2.6e-55
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.667	0.483	0.374	1.8e-46
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.667	0.476	0.385	2.3e-46
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.906	0.649	0.418	3.8e-46
TAIR|locus:2040297	394	SSL1 "strictosidine synthase-l	0.623	0.423	0.429	6e-46
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.585	0.389	0.421	1.1e-44
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.899	0.617	0.377	8.7e-40
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.369	0.295	0.465	1.5e-32
UNIPROTKB|H0Y512	409	APMAP "Adipocyte plasma membra	0.761	0.498	0.333	1.6e-32

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 110/195 (56%), Positives = 142/195 (72%)

Query:    77 RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
             RN+I  ++SGDKTGRLMKYD  TKQVT LL NL+F NGVALS++G+Y+L+ ET  CRILR
Sbjct:   182 RNYIGAMMSGDKTGRLMKYDN-TKQVTTLLSNLAFVNGVALSQNGDYLLVVETAMCRILR 240

Query:   137 YWL-----KTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIG 190
             YWL     K+      EI A+ LPGFPDNIKRSPRGGFWVG++++   ++K  +S  W+G
Sbjct:   241 YWLNETSVKSQSHDNYEIFAEGLPGFPDNIKRSPRGGFWVGLNTKHSKLTKFAMSNAWLG 300

Query:   191 NVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDG 249
                + LP+D +K+HS   + +GNG MA+R+SE  G +LE+ E      W SISEVEEKDG
Sbjct:   301 RAALGLPVDWMKVHSVWARYNGNG-MAVRLSEDSGVILEVFEGKNENKWISISEVEEKDG 359

Query:   250 NLWIGSVNMPYAGLY 264
              LW+GSVN P+AG+Y
Sbjct:   360 TLWVGSVNTPFAGMY 374

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 80/189 (42%), Positives = 123/189 (65%)

Query:    77 RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
             RN + ++ SGD TGR++KYDP  K+  VL+ NL FPNGV++S DG++ +  E     + R
Sbjct:   207 RNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRDGSFFVFCEGDIGSLRR 266

Query:   137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL 196
             YWLK  KAGT ++ A LPG PDN++ + +G FWV +H RR   S L+  +P +   +++L
Sbjct:   267 YWLKGEKAGTTDVFAYLPGHPDNVRTNQKGEFWVALHCRRNYYSYLMARYPKLRMFILRL 326

Query:   197 PIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
             PI     +S  + L  +G + ++ S +G ++ +LE+   K+ RS+SEVEEKDG LW+GSV
Sbjct:   327 PITARTHYSFQIGLRPHG-LVVKYSPEGKLMHVLEDSEGKVVRSVSEVEEKDGKLWMGSV 385

Query:   257 NMPYAGLYN 265
              M +  +Y+
Sbjct:   386 LMNFVAVYD 394

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 70/187 (37%), Positives = 122/187 (65%)

Query:    77 RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
             R+   V +SG+++GR+++YD  TK+  V++ NL   NG+AL++D ++++  E+ +  + R
Sbjct:   180 RDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITCESGTSLVHR 239

Query:   137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL 196
             YW+K  KAGT +I A++PG+PDNI+ +  G FW+G+H ++  I +L++ + W+G ++ K 
Sbjct:   240 YWIKGPKAGTRDIFAKVPGYPDNIRLTSTGDFWIGLHCKKNLIGRLIVKYKWLGKLVEKT 299

Query:   197 PIDIVKIHSSLVKLSG--NGGMAMRIS-EQGNVLEILEEIGRKMWRSISEVEEKD-GNLW 252
                 +K+   +  ++G    G+A++IS E G VLE+LE+   K  + +SE  E+D G LW
Sbjct:   300 ----MKLEYVIAFINGFKPHGVAVKISGETGEVLELLEDKEGKTMKYVSEAYERDDGKLW 355

Query:   253 IGSVNMP 259
              GSV  P
Sbjct:   356 FGSVYWP 362

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 72/187 (38%), Positives = 116/187 (62%)

Query:    77 RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
             R+   V LSG K GR+++YD   K+  V++  L  PNG+ALS++G++++  E+++    R
Sbjct:   181 RDVFYVSLSGTKVGRVIRYDMKKKEAKVIMDKLRLPNGLALSKNGSFVVTCESSTNICHR 240

Query:   137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL 196
              W+K  K+GT E+ A LPG PDNI+R+P G FWV +H ++   ++ VL   W+G   +  
Sbjct:   241 IWVKGPKSGTNEVFATLPGSPDNIRRTPTGDFWVALHCKKNLFTRAVLIHTWVGRFFM-- 298

Query:   197 PIDIVKIHSSLVKLSGNG--GMAMRIS-EQGNVLEILEEIGRKMWRSISEV-EEKDGNLW 252
               + +K+ + +  ++G    G+ +++S E G +LEILE+   K  + +SE  E KDG LW
Sbjct:   299 --NTMKMETVIHFMNGGKPHGIVVKLSGETGEILEILEDSEGKTVKYVSEAYETKDGKLW 356

Query:   253 IGSVNMP 259
             IGSV  P
Sbjct:   357 IGSVYWP 363

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 106/253 (41%), Positives = 161/253 (63%)

Query:    16 LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP 75
             L+I  +  G++     G +  + L  +A G+ P+   +D  I     +Q   ++F  TS 
Sbjct:   128 LYIADAYFGLLVVGPAGGLA-KPLVTEAEGQ-PFRFTNDLDI----DEQEDVIYFTDTSA 181

Query:    76 N---RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC 132
                 R  ++ +L+ DKTGR +KYD ++K+ TVLL  L+F NGVALS+D +++L+ ETT+C
Sbjct:   182 RFQRRQFLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTC 241

Query:   133 RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNV 192
             +ILR WL    AGT ++ A+LPGFPDNI+R+  G FWV +HS++   +KL L+  W  ++
Sbjct:   242 KILRLWLSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDL 301

Query:   193 LIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLW 252
             +++LPI   ++HS L         A+++SE G VLE+LE+   K  R ISEVEEKDG LW
Sbjct:   302 VLRLPISPQRLHS-LFTGGIPHATAIKLSESGKVLEVLEDKEGKTLRFISEVEEKDGKLW 360

Query:   253 IGSVNMPYAGLYN 265
             IGSV +P+ G+Y+
Sbjct:   361 IGSVLVPFLGVYD 373

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 79/184 (42%), Positives = 115/184 (62%)

Query:    84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 143
             L G+KTGR ++YD  TK+  V++  L FPNG+ALS DG+++L  E  +  + RYW K   
Sbjct:   212 LCGEKTGRAIRYDKKTKEAKVIMDRLHFPNGLALSIDGSFVLSCEVPTQLVHRYWAKGPN 271

Query:   144 AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIK-LPIDIV- 201
             AGT +I A+LPG+ DNI+R+  G FWV +HS++   S+L +  PW+G   IK L ++++ 
Sbjct:   272 AGTRDIFAKLPGYADNIRRTETGDFWVALHSKKTPFSRLSMIHPWVGKFFIKTLKMELLV 331

Query:   202 ------KIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGS 255
                   K H+  VKLSG         + G ++EILE+   K  + ISEV+E+DG LW GS
Sbjct:   332 FLFEGGKPHAVAVKLSG---------KTGEIMEILEDSEGKNMKFISEVQERDGRLWFGS 382

Query:   256 VNMP 259
             V +P
Sbjct:   383 VFLP 386

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 70/166 (42%), Positives = 108/166 (65%)

Query:    78 NHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRY 137
             NH  ++L G+ TGRL++YDP TK   ++L  L+FPNG+ LS+D +++L  ETT+CR+++Y
Sbjct:   222 NHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNGIQLSKDQSFLLFTETTNCRLVKY 281

Query:   138 WLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLP 197
             WL+  K G +E+VA LPGFPDN++ +  G FWV I   R    +++ + PWI ++  +LP
Sbjct:   282 WLEGPKMGEVEVVADLPGFPDNVRINEEGQFWVAIDCCRTPAQEVLTNNPWIRSIYFRLP 341

Query:   198 IDIVKIHSSLVKLSGNGGMAM--RISEQGNVLEILEEI-GR--KMW 238
             I + K+   L K  G     +  R  E+G VLE+LE+  G+  K+W
Sbjct:   342 IPM-KL---LAKTMGMRMYTVISRFDEEGKVLEVLEDRQGKVMKLW 383

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 96/254 (37%), Positives = 154/254 (60%)

Query:    16 LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP 75
             L+I  +  G+++   EG +   S+  +A G  P    +D  I     D    ++F  +S 
Sbjct:   144 LYIADAYLGIMKVGPEGGLAT-SVTNEADGV-PLRFTNDLDI-----DDEGNVYFTDSSS 196

Query:    76 ---NRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC 132
                 R  + +I+SG+ +GR++KY+P TK+ T L+ NL FPNG++L +DG++ +  E +  
Sbjct:   197 FFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCEGSIG 256

Query:   133 RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNV 192
             R+ +YWLK  KAGT E+VA L GFPDNI+ +  G FWV +H  R   + L+  +P +   
Sbjct:   257 RLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHLMAHYPRVRKF 316

Query:   193 LIKLPIDIVKIHSSLVKLSG-NGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNL 251
              +KLPI  VK    L+++ G    +A++ SE+G VL++LE+   K+ +++SEVEEKDG L
Sbjct:   317 FLKLPIS-VKFQY-LLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVSEVEEKDGKL 374

Query:   252 WIGSVNMPYAGLYN 265
             W+GSV M +  +Y+
Sbjct:   375 WMGSVLMSFIAVYD 388

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
 Identities = 47/101 (46%), Positives = 63/101 (62%)

Query:    71 ARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT 130
             +R SP +  I++ L  D TG+L KYDP+TK VTVL+  LS   G A+S DG+++L+++ T
Sbjct:   164 SRFSPIQVLIALGLK-DATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFT 222

Query:   131 SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWV 170
                I RYW+K  KAG+ E        PDNIKR    G FWV
Sbjct:   223 KSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWV 263

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|H0Y512 APMAP "Adipocyte plasma membrane-associated protein" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 73/219 (33%), Positives = 114/219 (52%)

Query:    50 TGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 109
             T   DGR I +     +W         R+++ +++ G   GRL++YD  T++V VLL  L
Sbjct:   189 TVTQDGRKIYFTDSSSKW-------QRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQL 241

Query:   110 SFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
              FPNGV LS   +++L+AETT  RI R ++    K G    V  +PGFPDNI+ S  GG+
Sbjct:   242 RFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGY 301

Query:   169 WVGIHSRRKGISKLVLSF----PWIGNVLIK---LPIDIVKIHSSLVKLSGNGGMAMRIS 221
             WVG+ + R      +L F    PWI  ++ K      D++    +++K      + + +S
Sbjct:   302 WVGMSTIRPNPGFSMLDFLSERPWIKRMIFKGSCAGCDLLFSQETVMKFVPRYSLVLELS 361

Query:   222 EQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260
             + G     L +    +   ISEV E DG+L++GS   P+
Sbjct:   362 DSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPF 400

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VI.1078.1	hypothetical protein (326 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00280038	hypothetical protein (145 aa)			•						0.505
	eugene3.85300001	hypothetical protein (161 aa)			•						0.469

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	1e-26
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	3e-11
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	2e-05

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 38/64 (59%), Positives = 47/64 (73%)

Query: 77  RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR 136
           R  I  +L GDKTGRLMKYDP+TK   VLL +L FPNG+ALS DG+++L  ET   RI +
Sbjct: 24  RQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIALSPDGSFVLFCETPMKRISK 83

Query: 137 YWLK 140
           YW+K
Sbjct: 84  YWIK 87

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 88  KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-----TS 142
            TG L + DP    V +L  +L+ PNG+A S DG  + +A+T + RI RY L        
Sbjct: 141 PTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG 200

Query: 143 KAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS 180
                    + PG PD +     G  WV        + 
Sbjct: 201 GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 86  GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRY--WLKTSK 143
           G + G L + DP  K V  +L  ++  NG+A S DG  +  A++ + RI  +        
Sbjct: 110 GGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGL 168

Query: 144 AGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHS 174
                + A      G PD +     G  WV    
Sbjct: 169 ISNRRVFADFKDGDGEPDGMAVDAEGNVWVARWG 202

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.62
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.56
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
PRK11028	330	6-phosphogluconolactonase; Provisional	99.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.11
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.04
COG3391	381	Uncharacterized conserved protein [Function unknow	99.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.02
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.0
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.89
PRK02888	635	nitrous-oxide reductase; Validated	98.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.76
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.7
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.68
COG3391	381	Uncharacterized conserved protein [Function unknow	98.64
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.49
PRK05137	435	tolB translocation protein TolB; Provisional	98.49
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.42
PRK04792	448	tolB translocation protein TolB; Provisional	98.4
PRK04922	433	tolB translocation protein TolB; Provisional	98.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.32
PRK02889	427	tolB translocation protein TolB; Provisional	98.29
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.28
PRK03629	429	tolB translocation protein TolB; Provisional	98.28
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.26
PRK04792	448	tolB translocation protein TolB; Provisional	98.25
PRK05137	435	tolB translocation protein TolB; Provisional	98.24
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.23
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.2
PRK04043	419	tolB translocation protein TolB; Provisional	98.19
PRK00178	430	tolB translocation protein TolB; Provisional	98.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.16
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.15
PRK04922	433	tolB translocation protein TolB; Provisional	98.1
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.09
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.06
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.06
PRK03629	429	tolB translocation protein TolB; Provisional	98.04
PRK02889	427	tolB translocation protein TolB; Provisional	97.99
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.98
PRK01742	429	tolB translocation protein TolB; Provisional	97.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.96
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.96
PRK02888	635	nitrous-oxide reductase; Validated	97.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.95
PRK00178	430	tolB translocation protein TolB; Provisional	97.92
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.87
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.87
PRK01742	429	tolB translocation protein TolB; Provisional	97.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.8
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.8
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.79
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.78
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.77
PRK01029	428	tolB translocation protein TolB; Provisional	97.73
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.7
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.7
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.68
PRK04043	419	tolB translocation protein TolB; Provisional	97.65
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.59
KOG0266	456	consensus WD40 repeat-containing protein [General	97.54
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.53
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.48
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.48
KOG2055	514	consensus WD40 repeat protein [General function pr	97.45
PRK01029	428	tolB translocation protein TolB; Provisional	97.44
COG4946	668	Uncharacterized protein related to the periplasmic	97.41
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.4
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.4
KOG0266	456	consensus WD40 repeat-containing protein [General	97.35
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.34
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.34
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.33
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.3
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.26
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.26
KOG0973	942	consensus Histone transcription regulator HIRA, WD	97.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.23
COG3211	616	PhoX Predicted phosphatase [General function predi	97.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.11
PTZ00421	493	coronin; Provisional	97.11
PTZ00420	568	coronin; Provisional	97.07
KOG0296	399	consensus Angio-associated migratory cell protein	97.07
KOG2139	445	consensus WD40 repeat protein [General function pr	97.06
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.05
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.04
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	97.01
PLN00181	793	protein SPA1-RELATED; Provisional	96.99
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.97
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.89
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.86
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.81
KOG0286	343	consensus G-protein beta subunit [General function	96.78
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.74
KOG1274	933	consensus WD40 repeat protein [General function pr	96.72
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.71
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.7
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.69
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.64
PRK13616	591	lipoprotein LpqB; Provisional	96.6
KOG0318	603	consensus WD40 repeat stress protein/actin interac	96.56
KOG2055	514	consensus WD40 repeat protein [General function pr	96.45
PTZ00420	568	coronin; Provisional	96.4
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.36
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.35
KOG1539	910	consensus WD repeat protein [General function pred	96.35
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.33
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.3
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.3
KOG1273	405	consensus WD40 repeat protein [General function pr	96.27
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.24
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.1
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.08
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.07
KOG0286	343	consensus G-protein beta subunit [General function	96.04
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	96.0
KOG0639	705	consensus Transducin-like enhancer of split protei	95.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.96
PTZ00421	493	coronin; Provisional	95.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	95.9
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	95.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.87
KOG2096	420	consensus WD40 repeat protein [General function pr	95.8
COG4946	668	Uncharacterized protein related to the periplasmic	95.77
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.64
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.61
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.59
KOG1274	933	consensus WD40 repeat protein [General function pr	95.52
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.43
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	95.41
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	95.35
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.34
COG3211	616	PhoX Predicted phosphatase [General function predi	95.29
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.28
KOG1539	910	consensus WD repeat protein [General function pred	95.17
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.13
PLN00181	793	protein SPA1-RELATED; Provisional	95.11
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.06
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.03
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	94.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.67
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.66
KOG0278	334	consensus Serine/threonine kinase receptor-associa	94.65
KOG1273	405	consensus WD40 repeat protein [General function pr	94.49
KOG0645	312	consensus WD40 repeat protein [General function pr	94.48
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	94.45
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.45
KOG0646	476	consensus WD40 repeat protein [General function pr	94.19
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	94.06
KOG0649	325	consensus WD40 repeat protein [General function pr	93.96
KOG1963	792	consensus WD40 repeat protein [General function pr	93.93
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	93.82
KOG2139	445	consensus WD40 repeat protein [General function pr	93.76
KOG0316	307	consensus Conserved WD40 repeat-containing protein	93.6
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.45
KOG2106	626	consensus Uncharacterized conserved protein, conta	93.37
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	93.36
KOG2096	420	consensus WD40 repeat protein [General function pr	93.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.29
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	93.04
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.8
KOG0283	712	consensus WD40 repeat-containing protein [Function	92.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	92.69
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	92.51
KOG0640	430	consensus mRNA cleavage stimulating factor complex	92.42
KOG0641	350	consensus WD40 repeat protein [General function pr	92.4
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.35
KOG0289	506	consensus mRNA splicing factor [General function p	92.28
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	92.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.22
KOG0973	942	consensus Histone transcription regulator HIRA, WD	92.17
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	92.08
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.03
KOG0289	506	consensus mRNA splicing factor [General function p	91.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.86
KOG3881	412	consensus Uncharacterized conserved protein [Funct	91.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	91.74
KOG0645	312	consensus WD40 repeat protein [General function pr	91.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	91.65
KOG0295	406	consensus WD40 repeat-containing protein [Function	91.62
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.33
KOG0639	705	consensus Transducin-like enhancer of split protei	91.04
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.03
KOG0301	745	consensus Phospholipase A2-activating protein (con	91.03
KOG0646	476	consensus WD40 repeat protein [General function pr	90.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	90.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	90.88
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	90.83
KOG0643	327	consensus Translation initiation factor 3, subunit	90.25
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	89.85
KOG4547	541	consensus WD40 repeat-containing protein [General	89.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	89.01
PHA02713	557	hypothetical protein; Provisional	88.75
KOG0649	325	consensus WD40 repeat protein [General function pr	88.71
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	88.25
KOG0284	464	consensus Polyadenylation factor I complex, subuni	87.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	87.35
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	86.91
KOG2111	346	consensus Uncharacterized conserved protein, conta	86.87
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	86.72
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	86.47
KOG2314	698	consensus Translation initiation factor 3, subunit	86.42
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	86.41
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	86.3
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	86.27
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	86.27
KOG2315	566	consensus Predicted translation initiation factor	85.84
PF07494	24	Reg_prop: Two component regulator propeller; Inter	85.35
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	85.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.04
KOG0296	399	consensus Angio-associated migratory cell protein	84.2
KOG2048	691	consensus WD40 repeat protein [General function pr	84.1
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	83.96
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	83.7
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	83.65
PRK13616	591	lipoprotein LpqB; Provisional	83.56
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	83.21
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	83.1
KOG0290	364	consensus Conserved WD40 repeat-containing protein	82.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	81.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.22
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	80.82
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.77
PHA02713	557	hypothetical protein; Provisional	80.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	80.54
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	80.49
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	80.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.39
KOG0308	735	consensus Conserved WD40 repeat-containing protein	80.15

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=5.1e-32  Score=236.58  Aligned_cols=233  Identities=38%  Similarity=0.642  Sum_probs=196.2

Q ss_pred             CCCcceEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEEc--------------C--------------CCCCeeEEE
Q 024436           33 AIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFART--------------S--------------PNRNHISVI   83 (268)
Q Consensus        33 ~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------------~--------------~~~~~~~~~   83 (268)
                      ...|-||+++..| + +|+...---++.++++|+..+..+..              .              ..++++.++
T Consensus       114 CGRPLGl~f~~~ggd-L~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGD-LYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             cCCcceEEeccCCCe-EEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence            4589999999998 6 55544555667777776532211110              0              113477788


Q ss_pred             eecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEE
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR  162 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~  162 (268)
                      +++.++||+++||+.|+..+++.+++.+|||+++|||++++.++|+...||.+|.+.+.+.|+.++|++ +||+||||..
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~  272 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRR  272 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeE
Confidence            899999999999999888899999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceE
Q 024436          163 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSIS  242 (268)
Q Consensus       163 d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s  242 (268)
                      +++|++||+....++.+.+++..+|..|+++.+++.++.-...+.....|+ ..+.+++.+|+++++++|++|+.+..++
T Consensus       273 ~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~-~~V~~~d~~G~il~~lhD~~g~~~~~~s  351 (376)
T KOG1520|consen  273 DSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPH-SAVKLSDETGKILESLHDKEGKVITLVS  351 (376)
T ss_pred             CCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCc-eEEEEecCCCcEEEEEecCCCCceEEEE
Confidence            999999999999888888889999999999988877654433344444565 6688888999999999999999999999


Q ss_pred             EEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          243 EVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       243 ~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+.+++|+||+||..+++++++|+.
T Consensus       352 ev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  352 EVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             EEeecCCeEEEcccCcceeEEEecC
Confidence            9999999999999999999999873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.86  E-value=5.5e-20  Score=157.48  Aligned_cols=165  Identities=25%  Similarity=0.436  Sum_probs=113.5

Q ss_pred             CEEEEecCCCCCcceEEEC-CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--C-------------CC-CeeEEEeec
Q 024436           24 GVVQYQIEGAIGPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--P-------------NR-NHISVILSG   86 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~-~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--~-------------~~-~~~~~~~~~   86 (268)
                      ..+.+..++   |.|++++ ++|.++++. .. .+..++++...++.+....  .             ++ -|+.+....
T Consensus        33 ~~~~~~~~~---~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~  107 (246)
T PF08450_consen   33 EVEVIDLPG---PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG  107 (246)
T ss_dssp             EEEEEESSS---EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred             eEEEEecCC---CceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC
Confidence            444555664   9999999 787755554 33 3344476554445444331  1             11 144433211


Q ss_pred             C--Cc--ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC--CCCCceeEEEeCC---CCC
Q 024436           87 D--KT--GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIVAQLP---GFP  157 (268)
Q Consensus        87 ~--~~--g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~--~~~g~~~~~~~l~---g~P  157 (268)
                      .  ..  |+||+++++ ++++.+.+++..||||+|+|||+.|||+++.+++|++|+++.  ..+...+++.+++   +.|
T Consensus       108 ~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p  186 (246)
T PF08450_consen  108 GASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP  186 (246)
T ss_dssp             CTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred             ccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence            1  22  889999999 899999999999999999999999999999999999999973  2345566776643   459


Q ss_pred             CceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          158 DNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       158 dgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      ||+++|++|+||||.+..+.     |.++.+.|+++..+++|
T Consensus       187 DG~~vD~~G~l~va~~~~~~-----I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  187 DGLAVDSDGNLWVADWGGGR-----IVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEEEBTTS-EEEEEETTTE-----EEEEETTSCEEEEEE-S
T ss_pred             CcceEcCCCCEEEEEcCCCE-----EEEECCCccEEEEEcCC
Confidence            99999999999999997763     55555555555555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=7.4e-20  Score=160.57  Aligned_cols=207  Identities=23%  Similarity=0.343  Sum_probs=136.9

Q ss_pred             CCCcceEEECCCCC-EEEEEeCCCeEEEEeCC-CCeEEEEEE--------------------------------------
Q 024436           33 AIGPESLAFDALGE-GPYTGVSDGRIIKWHQD-QRRWLHFAR--------------------------------------   72 (268)
Q Consensus        33 ~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~-g~~~~~~~~--------------------------------------   72 (268)
                      ..-.||...+++.. +++++...++|+++++. |+ ...+..                                      
T Consensus        24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLA  102 (307)
T ss_pred             cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEec
Confidence            45688888999866 88899999999999885 43 122110                                      


Q ss_pred             -cCCC----C----------C-eeEEEe-------ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec
Q 024436           73 -TSPN----R----------N-HISVIL-------SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET  129 (268)
Q Consensus        73 -~~~~----~----------~-~~~~~~-------~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~  129 (268)
                       ...+    +          . |+.+..       +....|+||++||.++..+.+.+.+..||||||||||++||++|+
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence             0000    0          0 343333       224678999999974444444555999999999999999999999


Q ss_pred             CCcEEEEEEccC--CCCCceeEEE--e-CCCCCCceEEcCCCCEEE-EEecCCCcceeeeEeeCccceeeeeccccceee
Q 024436          130 TSCRILRYWLKT--SKAGTIEIVA--Q-LPGFPDNIKRSPRGGFWV-GIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKI  203 (268)
Q Consensus       130 ~~~~I~~~~~~~--~~~g~~~~~~--~-l~g~Pdgia~d~dG~l~v-a~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~  203 (268)
                      ..++|++|+++.  ........+.  + .+|.|||+++|++|++|+ +.+++..     |.+|.++|+.+..+.+|...+
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-----v~~~~pdG~l~~~i~lP~~~~  257 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-----VVRFNPDGKLLGEIKLPVKRP  257 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-----EEEECCCCcEEEEEECCCCCC
Confidence            999999999872  2333333332  2 368999999999999995 4454433     888999999999999996555


Q ss_pred             ee-eccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCC
Q 024436          204 HS-SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMP  259 (268)
Q Consensus       204 ~~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~  259 (268)
                      ++ |+++            ++++.+.+.....+.. ...+ .....|.||......+
T Consensus       258 t~~~FgG------------~~~~~L~iTs~~~~~~-~~~~-~~~~~G~lf~~~~~~~  300 (307)
T COG3386         258 TNPAFGG------------PDLNTLYITSARSGMS-RMLT-ADPLGGGLFSLRLEVK  300 (307)
T ss_pred             ccceEeC------------CCcCEEEEEecCCCCC-cccc-ccccCceEEEEecccC
Confidence            54 3433            2234444443333322 2222 2335567776665544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-15  Score=125.64  Aligned_cols=142  Identities=15%  Similarity=0.233  Sum_probs=109.7

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc--cCCCCCceeEEEeC-------CCCCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL--KTSKAGTIEIVAQL-------PGFPD  158 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~--~~~~~g~~~~~~~l-------~g~Pd  158 (268)
                      ..|.+|++-++ ++++.+......+|||+|+.|.+.+|+.|+.+..|..|+.  .++.+.+++++.++       +-.||
T Consensus       137 ~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD  215 (310)
T KOG4499|consen  137 IGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD  215 (310)
T ss_pred             cccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCC
Confidence            45778888887 8999999999999999999999999999999999976664  46666666666553       13799


Q ss_pred             ceEEcCCCCEEEEEecCCCcceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEcCCC
Q 024436          159 NIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGR  235 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~~~g  235 (268)
                      |+++|.+|+||||+|.++.     |+++ +.+||++..+..|..++++|+...++..-+++.-..+ -.++.+..+|++
T Consensus       216 Gm~ID~eG~L~Va~~ng~~-----V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~a  289 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGT-----VQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNA  289 (310)
T ss_pred             cceEccCCcEEEEEecCcE-----EEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccCchhcccCCCC
Confidence            9999999999999999884     5554 6799999999999888887765545432344444444 345556666643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.63  E-value=2.1e-13  Score=137.73  Aligned_cols=207  Identities=15%  Similarity=0.172  Sum_probs=131.3

Q ss_pred             CCCcceEEECCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEEcCC----------------CCCe--------eEEEeecC
Q 024436           33 AIGPESLAFDALGEG-PYTGVSDGRIIKWHQDQRRWLHFARTSP----------------NRNH--------ISVILSGD   87 (268)
Q Consensus        33 ~~~P~gia~~~dG~~-l~~~~~~g~I~~~~~~g~~~~~~~~~~~----------------~~~~--------~~~~~~~~   87 (268)
                      +..|.|++++++|+. |+++..+++|.+++..+..+..++..+.                +.++        ...+.++.
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            457999999999875 5556678999999987665555543210                0111        01223445


Q ss_pred             CcceEEEEeCCCCeEEEee---------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-----c-
Q 024436           88 KTGRLMKYDPATKQVTVLL---------------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-----T-  146 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~---------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-----~-  146 (268)
                      .+++|+++|+.++.+..+.               ..+..|+||+++|||++|||+++.+++|++|+++++...     . 
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            6778889998777665432               135679999999999999999999999999998743210     0 


Q ss_pred             -----eeEEEe--------CCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCC
Q 024436          147 -----IEIVAQ--------LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  213 (268)
Q Consensus       147 -----~~~~~~--------l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~  213 (268)
                           ...+..        .-..|.|+++|++|++||++..++.     |.++...+..+..+.-.          ... 
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~tiaG~----------G~~-  846 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTTLAGT----------GKA-  846 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEEEecc----------CCc-
Confidence                 000000        0125999999999999999998874     66665433222211100          000 


Q ss_pred             cEEEEEECCCCCEEEEEEcCCCCceeceEEEE-EeCCEEEEeeCCCCeEEEEeCCC
Q 024436          214 GGMAMRISEQGNVLEILEEIGRKMWRSISEVE-EKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       214 ~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~-~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                       +     ..+|...      . ..+..+.+++ ..+|+|||++..+++|.++++++
T Consensus       847 -G-----~~dG~~~------~-a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        847 -G-----FKDGKAL------K-AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             -C-----CCCCccc------c-cccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence             0     0123211      0 1134455554 45789999999999999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.62  E-value=9.4e-14  Score=118.86  Aligned_cols=200  Identities=24%  Similarity=0.351  Sum_probs=128.3

Q ss_pred             cceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--------CCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436           36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--------PNRNHISVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        36 P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      |||+++++ +|.+|+++...++|+++++++.....+....        ++..   .++..  .+.+..+|+++++++.+.
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~---l~v~~--~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGR---LYVAD--SGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSE---EEEEE--TTCEEEEETTTTEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCE---EEEEE--cCceEEEecCCCcEEEEe
Confidence            79999998 8999999999999999999887533322111        1111   11122  234455588888887765


Q ss_pred             c------CCCCcceEEEccCCCEEEEEecCC--------cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEE
Q 024436          107 G------NLSFPNGVALSEDGNYILLAETTS--------CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWV  170 (268)
Q Consensus       107 ~------~~~~pnGia~spdg~~lyva~~~~--------~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~v  170 (268)
                      .      .+..||+++++|||+ ||++++..        ++|++++.++    +.....+ + ..|+||++++||+ ||+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~-~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADGL-GFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEEE-SSEEEEEEETTSSEEEE
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEEecCc-ccccceEECCcchheee
Confidence            3      467899999999996 99999865        6799999873    2333333 4 4799999999996 888


Q ss_pred             EEecCCCcceeeeEeeCcc--c------eeeeeccccc---eeee-----eeccccCCCcEEEEEECCCCCEEEEEEcCC
Q 024436          171 GIHSRRKGISKLVLSFPWI--G------NVLIKLPIDI---VKIH-----SSLVKLSGNGGMAMRISEQGNVLEILEEIG  234 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~--g------~~l~~i~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  234 (268)
                      ++...+ +    |.+++..  +      +.+..++...   ....     .++-..... +.+++++++|+++..+.-| 
T Consensus       151 ~ds~~~-~----i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-~~I~~~~p~G~~~~~i~~p-  223 (246)
T PF08450_consen  151 ADSFNG-R----IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-GRIVVFDPDGKLLREIELP-  223 (246)
T ss_dssp             EETTTT-E----EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-TEEEEEETTSCEEEEEE-S-
T ss_pred             cccccc-e----eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-CEEEEECCCccEEEEEcCC-
Confidence            888776 4    4444431  2      2222232221   0000     001001112 5688999999999999876 


Q ss_pred             CCceeceEEEEE---eCCEEEEeeC
Q 024436          235 RKMWRSISEVEE---KDGNLWIGSV  256 (268)
Q Consensus       235 g~~~~~~s~~~~---~~g~Lyv~s~  256 (268)
                      .   +.+|.++.   ..++|||++.
T Consensus       224 ~---~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  224 V---PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             S---SSEEEEEEESTTSSEEEEEEB
T ss_pred             C---CCEEEEEEECCCCCEEEEEeC
Confidence            2   35677766   3478999975

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.56  E-value=8.7e-15  Score=104.65  Aligned_cols=87  Identities=49%  Similarity=0.831  Sum_probs=64.6

Q ss_pred             ceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceE
Q 024436           37 ESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGV  115 (268)
Q Consensus        37 ~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi  115 (268)
                      ++++++++ |.+|+++...    +++.              +.++.++++..++|+++++||.|++.+++.+++.+||||
T Consensus         1 ndldv~~~~g~vYfTdsS~----~~~~--------------~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGV   62 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSS----RYDR--------------RDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGV   62 (89)
T ss_dssp             -EEEE-TTT--EEEEES-S----S--T--------------TGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEE
T ss_pred             CceeEecCCCEEEEEeCcc----ccCc--------------cceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeE
Confidence            46888888 8777765432    1111              223456678889999999999999999999999999999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEEccC
Q 024436          116 ALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       116 a~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ++++|++.|+|+|+...||+||.++|
T Consensus        63 als~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   63 ALSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEcCCCCEEEEEeccCceEEEEEEeC
Confidence            99999999999999999999999886

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=3.8e-11  Score=121.52  Aligned_cols=147  Identities=17%  Similarity=0.183  Sum_probs=104.2

Q ss_pred             CCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-------------CCee--------EEEeecCCcc
Q 024436           33 AIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-------------RNHI--------SVILSGDKTG   90 (268)
Q Consensus        33 ~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-------------~~~~--------~~~~~~~~~g   90 (268)
                      +..|.+++++++ |++|+++..+++|.+++.+|+....+...+..             +++.        ..++.+..++
T Consensus       567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            678999999985 77888888999999999998854333321110             1110        1234455667


Q ss_pred             eEEEEeCCCCeEEEeec-----------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-
Q 024436           91 RLMKYDPATKQVTVLLG-----------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-  152 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~-----------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-  152 (268)
                      +|.++|..++.++.+..                 .+..|.+++++|+++.|||++..+++|++|+..++.   ...+.. 
T Consensus       647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~  723 (1057)
T PLN02919        647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGD  723 (1057)
T ss_pred             eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecC
Confidence            88889988777776642                 156799999999766899999999999999986532   111110 


Q ss_pred             --------------CCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeC
Q 024436          153 --------------LPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP  187 (268)
Q Consensus       153 --------------l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~  187 (268)
                                    .-..|.||+++++|+ |||++..++.     |.+++
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-----Irv~D  768 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-----IRALD  768 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-----EEEEE
Confidence                          013699999999987 9999998874     55554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.41  E-value=9.5e-11  Score=98.91  Aligned_cols=230  Identities=17%  Similarity=0.194  Sum_probs=148.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCee-------EEEeecCCcceEEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHI-------SVILSGDKTGRLMKYD   96 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~g~v~~~d   96 (268)
                      ...+++++...+|+.++.++||.++|++...|.|-+++|.......+..-++.+++.       ..++.+... .|.|+|
T Consensus        52 s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~d  130 (353)
T COG4257          52 SSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLD  130 (353)
T ss_pred             ccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEec
Confidence            788999999899999999999999999999999999998644344443222222211       122232333 899999


Q ss_pred             CCCCeEEEeecCCCCc----ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEE
Q 024436           97 PATKQVTVLLGNLSFP----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus        97 ~~~~~~~~~~~~~~~p----nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va  171 (268)
                      +++.+++++.-....+    |-..|+++|+ |+++... +---+.|+..   ...++|.. ..+.|.|||+.+||.+|++
T Consensus       131 pkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa~---~~i~vfpaPqG~gpyGi~atpdGsvwya  205 (353)
T COG4257         131 PKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPAR---NVISVFPAPQGGGPYGICATPDGSVWYA  205 (353)
T ss_pred             CcccceEEeecccccCCCcccceeeCCCcc-EEEeecc-ccceecCccc---CceeeeccCCCCCCcceEECCCCcEEEE
Confidence            9989888764333333    4689999995 9988762 2112333321   23455532 3357999999999999999


Q ss_pred             EecCCCcceeeeEe-eCccceeeeeccccce--e---------eeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436          172 IHSRRKGISKLVLS-FPWIGNVLIKLPIDIV--K---------IHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR  239 (268)
Q Consensus       172 ~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~  239 (268)
                      ....+-     |.+ .+.++ .-..++.|..  .         +-..+-..... +.+.+++|.-+....|.-|+-+. .
T Consensus       206 slagna-----iaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~a-r  277 (353)
T COG4257         206 SLAGNA-----IARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSKA-R  277 (353)
T ss_pred             eccccc-----eEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCC-ceeeEeCcccccceeeeCCCCCC-C
Confidence            877652     333 44555 3333443321  1         00111111222 56778888776677777664332 3


Q ss_pred             ceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          240 SISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       240 ~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .-+.-++..+++|+..+..+.|.++|-+
T Consensus       278 pys~rVD~~grVW~sea~agai~rfdpe  305 (353)
T COG4257         278 PYSMRVDRHGRVWLSEADAGAIGRFDPE  305 (353)
T ss_pred             cceeeeccCCcEEeeccccCceeecCcc
Confidence            3344466779999999999999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=1.9e-10  Score=103.47  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=92.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEe--CCCCeEEE--EE---EcC-----------------CCCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWH--QDQRRWLH--FA---RTS-----------------PNRN   78 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~--~~g~~~~~--~~---~~~-----------------~~~~   78 (268)
                      .+..++.. ...|..++++|+|+.+++.+ ..|.|..++  .+|..-..  ..   ..+                 |++.
T Consensus        78 ~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   78 LLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             EEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             EeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence            34444433 35899999999999998876 578886654  45542111  11   111                 1222


Q ss_pred             eeEEEeecCCcceEEEEe--CCCCeEEE----eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE--
Q 024436           79 HISVILSGDKTGRLMKYD--PATKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV--  150 (268)
Q Consensus        79 ~~~~~~~~~~~g~v~~~d--~~~~~~~~----~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~--  150 (268)
                      ++.  ..+....+|+.++  ..++++..    .......|..++|+|||+++||++..++.|.+|+++... +..+..  
T Consensus       157 ~v~--v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~  233 (345)
T PF10282_consen  157 FVY--VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQT  233 (345)
T ss_dssp             EEE--EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEE
T ss_pred             EEE--EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEE
Confidence            332  2334455555544  44333433    235567799999999999999999999999999998211 222222  


Q ss_pred             -EeCC----C--CCCceEEcCCCC-EEEEEecCCC
Q 024436          151 -AQLP----G--FPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       151 -~~l~----g--~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                       ..+|    +  .|.+|++++||+ |||+....+.
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence             2232    1  478899999997 7888877663

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=4.9e-10  Score=99.87  Aligned_cols=139  Identities=14%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             CcceEEECCCCCEEEEEe-CCCeEEEEeCC--CCeEEEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCC-
Q 024436           35 GPESLAFDALGEGPYTGV-SDGRIIKWHQD--QRRWLHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPAT-   99 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~-~~g~I~~~~~~--g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~-   99 (268)
                      .|.+++++|+|+.+|+.. .+++|..++.+  |.......           ...+++.++.  ......+.|..+|.++ 
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~--v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW--VPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE--EeeCCCCEEEEEEECCC
Confidence            799999999999888765 47877777543  42111111           1123333332  2334556666666643 


Q ss_pred             CeEEE------eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---C------CCCCceEEcC
Q 024436          100 KQVTV------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---P------GFPDNIKRSP  164 (268)
Q Consensus       100 ~~~~~------~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~------g~Pdgia~d~  164 (268)
                      +++..      -......|++++|+|||++|||++...+.|.+|+++.. .+..+.+..+   |      ..|.+|+++|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            33321      11234679999999999999999998999999999731 1122332222   1      1344689999


Q ss_pred             CCC-EEEEEecCC
Q 024436          165 RGG-FWVGIHSRR  176 (268)
Q Consensus       165 dG~-l~va~~~~~  176 (268)
                      +|+ +|+++...+
T Consensus       238 dg~~lyv~~~~~~  250 (330)
T PRK11028        238 DGRHLYACDRTAS  250 (330)
T ss_pred             CCCEEEEecCCCC
Confidence            997 788765544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.37  E-value=1.4e-10  Score=97.88  Aligned_cols=226  Identities=18%  Similarity=0.214  Sum_probs=150.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--CCCC--------eeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--PNRN--------HISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--~~~~--------~~~~~~~~~~~g~v~   93 (268)
                      -+++++++....|++|.++|||..++++... .|.|+++....++.|....  ++.+        +...++++ ..|.--
T Consensus        94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~-q~G~yG  171 (353)
T COG4257          94 EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTG-QIGAYG  171 (353)
T ss_pred             ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEee-ccccce
Confidence            6889999988899999999999999987665 8999998654345553221  1111        11222222 233334


Q ss_pred             EEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCCceEEcCCCCEE
Q 024436           94 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFW  169 (268)
Q Consensus        94 ~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pdgia~d~dG~l~  169 (268)
                      ++||.++.+++.. .....|+||+..|||. +|+++-..+-|-++|...   +..+++..   +...-+.+-.|+.|++|
T Consensus       172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~w  247 (353)
T COG4257         172 RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAW  247 (353)
T ss_pred             ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEE
Confidence            7888876666553 3456799999999995 999999889999988754   23344432   22346778899999999


Q ss_pred             EEEecCCCcceeeeEeeCccceeeeecccccee--eee--------eccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436          170 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVK--IHS--------SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR  239 (268)
Q Consensus       170 va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~  239 (268)
                      ++.|....     +.+|.++-+.-.+.++|..+  ..+        ++-..... +.+.++|+.-....+|..+.  .-.
T Consensus       248 ittwg~g~-----l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a-gai~rfdpeta~ftv~p~pr--~n~  319 (353)
T COG4257         248 ITTWGTGS-----LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA-GAIGRFDPETARFTVLPIPR--PNS  319 (353)
T ss_pred             EeccCCce-----eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc-CceeecCcccceEEEecCCC--CCC
Confidence            99999885     77787777666666665321  111        11111122 56788888887888876542  222


Q ss_pred             ceEEEEE--eCCEEEEeeCCCCeEEEEe
Q 024436          240 SISEVEE--KDGNLWIGSVNMPYAGLYN  265 (268)
Q Consensus       240 ~~s~~~~--~~g~Lyv~s~~~~~v~~~~  265 (268)
                      .  .+..  ..|++|.+...-+.+.+++
T Consensus       320 g--n~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         320 G--NIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             C--ceeccCCCCceeecccCcceeEEEE
Confidence            2  3332  4588999999888887764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=6.2e-10  Score=100.11  Aligned_cols=144  Identities=22%  Similarity=0.360  Sum_probs=92.7

Q ss_pred             CCCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCe--EEEEE--Ec-----------CCCCCeeEEEeecCCcceEEEEe
Q 024436           33 AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRR--WLHFA--RT-----------SPNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~--~~~~~--~~-----------~~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      ...|+.+.++|||+.+|+ +...++|+.++.+...  +....  ..           .+++++++...+...+-.++.++
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            356899999999997766 5678899887654322  33211  11           12334555554544445666777


Q ss_pred             CCCCeEEEee---------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCCceEEcC
Q 024436           97 PATKQVTVLL---------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSP  164 (268)
Q Consensus        97 ~~~~~~~~~~---------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pdgia~d~  164 (268)
                      +.+++++.+.         .+...|.+|+++|||++|||+++..+.|.+|+++.. .+..+....   ....|+++++++
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEEEE-T
T ss_pred             ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEEEEeC
Confidence            5567655432         122368899999999999999999999999999632 123333322   223699999999


Q ss_pred             CCC-EEEEEecCCC
Q 024436          165 RGG-FWVGIHSRRK  177 (268)
Q Consensus       165 dG~-l~va~~~~~~  177 (268)
                      +|+ |||++...+.
T Consensus       302 ~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  302 DGRYLYVANQDSNT  315 (345)
T ss_dssp             TSSEEEEEETTTTE
T ss_pred             CCCEEEEEecCCCe
Confidence            997 7777777653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.26  E-value=7.1e-09  Score=92.38  Aligned_cols=148  Identities=9%  Similarity=0.010  Sum_probs=90.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeC--CCCeEEEEEE--c---------CCCCCeeEEEeecCCc
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQ--DQRRWLHFAR--T---------SPNRNHISVILSGDKT   89 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~--~g~~~~~~~~--~---------~~~~~~~~~~~~~~~~   89 (268)
                      .+++++.+  ..|..++++|||+.+|+.. .++.|..++.  +|+ +.....  .         .+++++++..  ....
T Consensus        27 ~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~~~p~~i~~~~~g~~l~v~--~~~~  101 (330)
T PRK11028         27 LLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLPGSPTHISTDHQGRFLFSA--SYNA  101 (330)
T ss_pred             eeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCCCCceEEEECCCCCEEEEE--EcCC
Confidence            44455444  3799999999999888765 4687855543  343 221111  1         1233333322  2234


Q ss_pred             ceEEEEeCCC-CeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCce-eEEEe--CCCCCCceE
Q 024436           90 GRLMKYDPAT-KQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTI-EIVAQ--LPGFPDNIK  161 (268)
Q Consensus        90 g~v~~~d~~~-~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~-~~~~~--l~g~Pdgia  161 (268)
                      +.|..++.++ +.+   .....+...|.+++++|||+++||++...++|++|+++. +.+... .....  ....|++++
T Consensus       102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~  181 (330)
T PRK11028        102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV  181 (330)
T ss_pred             CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence            5555554431 322   112234567899999999999999999999999999974 222110 01111  224699999


Q ss_pred             EcCCCC-EEEEEecCC
Q 024436          162 RSPRGG-FWVGIHSRR  176 (268)
Q Consensus       162 ~d~dG~-l~va~~~~~  176 (268)
                      ++++|+ +|+++...+
T Consensus       182 ~~pdg~~lyv~~~~~~  197 (330)
T PRK11028        182 FHPNQQYAYCVNELNS  197 (330)
T ss_pred             ECCCCCEEEEEecCCC
Confidence            999997 677776554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.18  E-value=5.5e-09  Score=93.40  Aligned_cols=101  Identities=17%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEe--CCC---
Q 024436           90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQ--LPG---  155 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~--l~g---  155 (268)
                      ++|+.+|.+++++.........|+|+ +||||+.|||+++         ..+.|.+||....     +...+  +|.   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-----~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-----LPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----cEEeEEccCCCch
Confidence            89999999988887777777899997 9999999999999         8899999998752     22322  222   


Q ss_pred             -----CCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccc
Q 024436          156 -----FPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDI  200 (268)
Q Consensus       156 -----~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~  200 (268)
                           .|..+++++||+ |||+.+.....    |.. ...+++++..+++|.
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~----V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPA----VGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCE----EEEEECCCCcEEEEEeCCC
Confidence                 355999999996 89888774333    433 457899999999874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.11  E-value=8.8e-07  Score=76.53  Aligned_cols=143  Identities=16%  Similarity=0.173  Sum_probs=88.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEE-EEE--------cCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLH-FAR--------TSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~~~-~~~--------~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+..+  ..|.+++++|+|+.+| ++..++.|..++.++..... +..        ..++++.+.  ......+.+.
T Consensus        23 ~~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~~~l~   98 (300)
T TIGR03866        23 VTRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILY--IANEDDNLVT   98 (300)
T ss_pred             eEEEEECC--CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEE--EEcCCCCeEE
Confidence            45555544  3689999999999765 45567899999875432221 111        112222221  2333457899


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEE
Q 024436           94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~  172 (268)
                      .+|..+++.....+....|++++++|||+.++++......++.|+..+..   ..........|..++++++|+ +|++.
T Consensus        99 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866        99 VIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             EEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEc
Confidence            99988665433333334589999999999888776655567777765421   111111234688899999997 44554


Q ss_pred             e
Q 024436          173 H  173 (268)
Q Consensus       173 ~  173 (268)
                      .
T Consensus       176 ~  176 (300)
T TIGR03866       176 E  176 (300)
T ss_pred             C
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.11  E-value=2e-08  Score=91.05  Aligned_cols=187  Identities=18%  Similarity=0.195  Sum_probs=109.4

Q ss_pred             EEEEec-CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCC--C-
Q 024436           25 VVQYQI-EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPAT--K-  100 (268)
Q Consensus        25 ~~~i~~-~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~-  100 (268)
                      ++.++- |.+..|.+++++++|+++++...+-.-   . .+.                   .....++|++++..+  | 
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~---~-~~~-------------------~~~~~~rI~~l~d~dgdG~   60 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSR---P-AGR-------------------QGPLGDRILILEDADGDGK   60 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCCcCCC---C-CCC-------------------CCCCCCEEEEEEcCCCCCC
Confidence            445553 457899999999999988776533111   0 000                   001112666664421  2 


Q ss_pred             --eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE-ccCC-CC-CceeEEEe-CC-------CCCCceEEcCCCC
Q 024436          101 --QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW-LKTS-KA-GTIEIVAQ-LP-------GFPDNIKRSPRGG  167 (268)
Q Consensus       101 --~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~-~~~~-~~-g~~~~~~~-l~-------g~Pdgia~d~dG~  167 (268)
                        +.+++++++..|+||++.++|  |||++.  .+|++|. .++. .. +..+++.+ ++       ..|.++++++||+
T Consensus        61 ~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~  136 (367)
T TIGR02604        61 YDKSNVFAEELSMVTGLAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW  136 (367)
T ss_pred             cceeEEeecCCCCccceeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence              356778889999999999987  999864  5799884 4332 22 24555544 32       2388999999999


Q ss_pred             EEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE-
Q 024436          168 FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE-  246 (268)
Q Consensus       168 l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~-  246 (268)
                      ||++........   +. .+  +.     +.  .      ...... +.+++++++|...+.+..  |  +..+-+++. 
T Consensus       137 LYv~~G~~~~~~---~~-~~--~~-----~~--~------~~~~~~-g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d  192 (367)
T TIGR02604       137 LYFNHGNTLASK---VT-RP--GT-----SD--E------SRQGLG-GGLFRYNPDGGKLRVVAH--G--FQNPYGHSVD  192 (367)
T ss_pred             EEEecccCCCce---ec-cC--CC-----cc--C------cccccC-ceEEEEecCCCeEEEEec--C--cCCCccceEC
Confidence            999887543210   00 00  00     00  0      001122 568888888777777653  2  333334433 


Q ss_pred             eCCEEEEeeCCCCeEE
Q 024436          247 KDGNLWIGSVNMPYAG  262 (268)
Q Consensus       247 ~~g~Lyv~s~~~~~v~  262 (268)
                      ..|+||++.-.+....
T Consensus       193 ~~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       193 SWGDVFFCDNDDPPLC  208 (367)
T ss_pred             CCCCEEEEccCCCcee
Confidence            4678888766544333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=4.3e-08  Score=85.52  Aligned_cols=139  Identities=18%  Similarity=0.318  Sum_probs=96.3

Q ss_pred             cceEEECCCCCEEEE-EeCCCeEEEEeC-CCCeEEEEE--Ec-----------CCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           36 PESLAFDALGEGPYT-GVSDGRIIKWHQ-DQRRWLHFA--RT-----------SPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        36 P~gia~~~dG~~l~~-~~~~g~I~~~~~-~g~~~~~~~--~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ++..-++|+|+++++ +...++|..++. +|+ ++...  ..           .|++++.+.+.+-..+-.+|.+++..+
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g  225 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG  225 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence            677889999986654 678899988875 443 22211  11           123346666667777778899998778


Q ss_pred             eEEEeecC---------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCC-CCceEEcCCCCE
Q 024436          101 QVTVLLGN---------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF-PDNIKRSPRGGF  168 (268)
Q Consensus       101 ~~~~~~~~---------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~-Pdgia~d~dG~l  168 (268)
                      +++.+..-         ......|.+++||++||++++..+.|..|.++.. -+..+.+..  ..|. |+.+.+++.|++
T Consensus       226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccCCcCCccceeCCCCCE
Confidence            88776432         2334469999999999999999999999999731 122333332  2354 999999999997


Q ss_pred             EEEEecCC
Q 024436          169 WVGIHSRR  176 (268)
Q Consensus       169 ~va~~~~~  176 (268)
                      +++..+..
T Consensus       305 Liaa~q~s  312 (346)
T COG2706         305 LIAANQKS  312 (346)
T ss_pred             EEEEccCC
Confidence            66666554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=1.5e-07  Score=85.78  Aligned_cols=183  Identities=19%  Similarity=0.244  Sum_probs=117.8

Q ss_pred             CCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCC---------CCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSP---------NRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..|.++++.++|...|+.. ..+.|..++........+...+.         ..++++..-....++.+..+|++++++.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            6899999999999666544 56899999865544444433321         2223322212125689999999988776


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE---EEeCCCCCCceEEcCCCC-EEEEEecCC-Cc
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI---VAQLPGFPDNIKRSPRGG-FWVGIHSRR-KG  178 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~---~~~l~g~Pdgia~d~dG~-l~va~~~~~-~~  178 (268)
                      ........|-|++++|+|+.+|+++..+++|..++.++..... ..   .......|.+++++++|+ +|+++.... ..
T Consensus       154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            6554445789999999999999999999999999977532211 11   011224799999999997 899887762 12


Q ss_pred             ceeeeEee-Cccceeeee-ccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcC
Q 024436          179 ISKLVLSF-PWIGNVLIK-LPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEI  233 (268)
Q Consensus       179 ~~~~v~~~-~~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  233 (268)
                          +.+. ...+.+... .+.+           ... ...+.++|+|+...+....
T Consensus       233 ----v~~id~~~~~v~~~~~~~~-----------~~~-~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         233 ----VLKIDTATGNVTATDLPVG-----------SGA-PRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             ----EEEEeCCCceEEEeccccc-----------cCC-CCceeECCCCCEEEEEecC
Confidence                3333 233444332 2221           101 2357778888877777553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.9e-07  Score=81.52  Aligned_cols=140  Identities=18%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             CCcceEEECCCCCEEEEEe-CCCeEEEE--eCCCCeEEEE---EEcCC------------------CCCeeEEEeecCCc
Q 024436           34 IGPESLAFDALGEGPYTGV-SDGRIIKW--HQDQRRWLHF---ARTSP------------------NRNHISVILSGDKT   89 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~--~~~g~~~~~~---~~~~~------------------~~~~~~~~~~~~~~   89 (268)
                      ..|..++++++|+++++.+ +.|.|...  ..+|..+...   ...++                  ..+|+  +..+-+.
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l--~v~DLG~  166 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL--VVPDLGT  166 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE--EEeecCC
Confidence            4679999999999888865 45665543  4566543221   11111                  11122  2234456


Q ss_pred             ceEEEEeCCCCeEEEe----ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CC----C--C
Q 024436           90 GRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LP----G--F  156 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~----~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~----g--~  156 (268)
                      .+|+.|+.+.|+++..    ......|..|+|.|+|+..|+....+++|.+|..++. .++.+.+..   +|    |  .
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence            6666666665665432    2455779999999999999999999999999999853 234444332   33    2  2


Q ss_pred             CCceEEcCCCCE-EEEEecCC
Q 024436          157 PDNIKRSPRGGF-WVGIHSRR  176 (268)
Q Consensus       157 Pdgia~d~dG~l-~va~~~~~  176 (268)
                      ...|.+++||++ |++..+..
T Consensus       246 ~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCC
Confidence            345889999985 55544443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.02  E-value=4.9e-07  Score=80.99  Aligned_cols=145  Identities=12%  Similarity=0.138  Sum_probs=80.2

Q ss_pred             CCEEEEecCC------CCCcceEEECCCCCEEEEEe-C-CCeEEEEeCCCCeEEEEEEcCCCCCeeEEEee-----cCCc
Q 024436           23 QGVVQYQIEG------AIGPESLAFDALGEGPYTGV-S-DGRIIKWHQDQRRWLHFARTSPNRNHISVILS-----GDKT   89 (268)
Q Consensus        23 ~~~~~i~~~~------~~~P~gia~~~dG~~l~~~~-~-~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~   89 (268)
                      +-+..|++|.      ...|+.++++|||+.+|+.+ . +..|..+|...+.+...... |+...++...+     .-.+
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~D  166 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRD  166 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeec
Confidence            3455666664      12344999999999998765 4 78999999865543332222 22222211100     0012


Q ss_pred             ceEE--EEeCCCCeEEE----eecC-----CCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----
Q 024436           90 GRLM--KYDPATKQVTV----LLGN-----LSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL----  153 (268)
Q Consensus        90 g~v~--~~d~~~~~~~~----~~~~-----~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----  153 (268)
                      |+..  .+|.+ |+...    +...     +..|   .+++ ||+++|++..  +.|+.+++.+........+..+    
T Consensus       167 g~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~  240 (352)
T TIGR02658       167 GSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAE  240 (352)
T ss_pred             CceEEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccc
Confidence            3222  23333 33221    1111     1334   5566 9999999876  9999999865432222332211    


Q ss_pred             ---CCCCCc---eEEcCCC-CEEEEEec
Q 024436          154 ---PGFPDN---IKRSPRG-GFWVGIHS  174 (268)
Q Consensus       154 ---~g~Pdg---ia~d~dG-~l~va~~~  174 (268)
                         .-.|.|   ++++++| ++||+.++
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~  268 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQ  268 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecC
Confidence               114556   9999997 58997654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.00  E-value=1.9e-06  Score=74.38  Aligned_cols=123  Identities=17%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             CEEEEEeCCCeEEEEeCCC-CeEEEEEEc--------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEE
Q 024436           46 EGPYTGVSDGRIIKWHQDQ-RRWLHFART--------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA  116 (268)
Q Consensus        46 ~~l~~~~~~g~I~~~~~~g-~~~~~~~~~--------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia  116 (268)
                      +++++...++.|..++.+. +....+...        .+++..+.  ......+.|+.+|.++++..........+..++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLY--VCASDSDTIQVIDLATGEVIGTLPSGPDPELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEE--EEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence            4566667778888887643 322222211        12222221  233456789999988777654443344578899


Q ss_pred             EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEecC
Q 024436          117 LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       117 ~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ++|||+.+|++....++|..|++...     +.+..  ....|.+++++++|++++.....
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~  135 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETR-----KVLAEIPVGVEPEGMAVSPDGKIVVNTSET  135 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCC-----eEEeEeeCCCCcceEEECCCCCEEEEEecC
Confidence            99999999999877889999998742     22222  22358899999999977765544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.89  E-value=1e-07  Score=86.40  Aligned_cols=170  Identities=16%  Similarity=0.214  Sum_probs=98.0

Q ss_pred             cCCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEE
Q 024436           86 GDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKR  162 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~  162 (268)
                      ....++|..+|.++.++.... .+...+.+++++|||+++||++. .+.|.++|+...+     .+.+  ....|.|+++
T Consensus        12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~-----~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen   12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK-----VVATIKVGGNPRGIAV   85 (369)
T ss_dssp             EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS-----EEEEEE-SSEEEEEEE
T ss_pred             ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCccc-----EEEEEecCCCcceEEE
Confidence            356789999999887654444 33344677899999999999986 5799999987532     3333  2346999999


Q ss_pred             cCCCC-EEEEEecCCCcceeeeEee-Cccceeeeeccccce-------eeeeeccccCCCcEEEEEECCCCCEEEEEEcC
Q 024436          163 SPRGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIV-------KIHSSLVKLSGNGGMAMRISEQGNVLEILEEI  233 (268)
Q Consensus       163 d~dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  233 (268)
                      ++||+ +|++++..+.     +..+ ..+.+.+..++....       ++.......... .+++.+-..|++..+ +-.
T Consensus        86 s~DG~~~~v~n~~~~~-----v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vV-dy~  158 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGT-----VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVV-DYS  158 (369)
T ss_dssp             --TTTEEEEEEEETTE-----EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEE-ETT
T ss_pred             cCCCCEEEEEecCCCc-----eeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEE-Eec
Confidence            99997 7778877764     5444 467888888876522       112222111111 345555555555433 111


Q ss_pred             CCCcee--c------eEEEE-Ee-CCEEEEeeCCCCeEEEEeCCC
Q 024436          234 GRKMWR--S------ISEVE-EK-DGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       234 ~g~~~~--~------~s~~~-~~-~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +.+.+.  .      +-.+. .. +.+++++...+|.|+++|+++
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             cccccceeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence            111111  0      11222 22 456889999999999999864

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.83  E-value=6.3e-07  Score=84.66  Aligned_cols=153  Identities=16%  Similarity=0.186  Sum_probs=103.6

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEe---C-CCeEEEEeCCCCeEEEEEE------cCCCCCeeEEEeecCCcce
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGV---S-DGRIIKWHQDQRRWLHFAR------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~---~-~g~I~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~g~   91 (268)
                      ++-+.++.+++  .|..+++++||+.+|+.+   . ...+..++.....+...-.      ..+++.+..  .   ..++
T Consensus       225 meV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~--V---~gn~  297 (635)
T PRK02888        225 MEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT--I---GGSK  297 (635)
T ss_pred             ceEEEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE--E---CCCE
Confidence            34668888987  899999999999998875   2 2344444433222221111      112222222  1   2467


Q ss_pred             EEEEeCCC-----CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC------CCCcee-EEEe--CCCCC
Q 024436           92 LMKYDPAT-----KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS------KAGTIE-IVAQ--LPGFP  157 (268)
Q Consensus        92 v~~~d~~~-----~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~------~~g~~~-~~~~--l~g~P  157 (268)
                      |-.+|..+     .++.....-...|.|++++|||+++|+++..++.+.++|++.-      ++..+. +.++  +.-.|
T Consensus       298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP  377 (635)
T PRK02888        298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP  377 (635)
T ss_pred             EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence            99999986     3455556677899999999999999999999999999998741      111111 2333  32369


Q ss_pred             CceEEcCCCCEEEEEecCCCcceee
Q 024436          158 DNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       158 dgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      -..++|++|+.|++.+-.. .+.+|
T Consensus       378 LHTaFDg~G~aytslf~ds-qv~kw  401 (635)
T PRK02888        378 LHTAFDGRGNAYTTLFLDS-QIVKW  401 (635)
T ss_pred             ceEEECCCCCEEEeEeecc-eeEEE
Confidence            9999999999999999876 44444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.76  E-value=9.4e-06  Score=73.71  Aligned_cols=233  Identities=12%  Similarity=0.105  Sum_probs=125.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE--------EcCCCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFA--------RTSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~--------~~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      -+.+|+.++ ..+.+++++|||+.+|+...+|.|..+|....... .+.        ..++++.|+..  .....+.+..
T Consensus        28 ~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v--~n~~~~~v~v  104 (369)
T PF02239_consen   28 VVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV--ANYEPGTVSV  104 (369)
T ss_dssp             EEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE--EEEETTEEEE
T ss_pred             EEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE--EecCCCceeE
Confidence            567777764 22456889999999999888999999998654322 221        12445555543  2234578899


Q ss_pred             EeCCCCeEEEeecCC--------CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436           95 YDPATKQVTVLLGNL--------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~--------~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG  166 (268)
                      +|.++.++.......        ....+|..+|.+...+++-...++|+.++..+.+.- ..........|.+..+|++|
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEEEE--TTEEEEEE-TTS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceeeecccccccccccCccc
Confidence            998877654432211        234588899998877778888899999998753211 11222334579999999999


Q ss_pred             CE-EEEEecCCCcceeeeEe-eCccceeeeecccccee--------ee------eeccccCCCcEEEEE------ECC-C
Q 024436          167 GF-WVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVK--------IH------SSLVKLSGNGGMAMR------ISE-Q  223 (268)
Q Consensus       167 ~l-~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~--------~~------~~~~~~~~~~~~~~~------~~~-~  223 (268)
                      ++ +++.+..+ +    +.. ....+++...++.+..+        ++      +............+-      .+. +
T Consensus       184 ry~~va~~~sn-~----i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  184 RYFLVAANGSN-K----IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             SEEEEEEGGGT-E----EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             ceeeecccccc-e----eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence            85 55555554 3    322 45666666655543111        00      000000000001111      121 2


Q ss_pred             CCEEEEEEcCCCCceeceEEEEEeCCEEEEe---eCCCCeEEEEeCCC
Q 024436          224 GNVLEILEEIGRKMWRSISEVEEKDGNLWIG---SVNMPYAGLYNYSS  268 (268)
Q Consensus       224 G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~---s~~~~~v~~~~~~~  268 (268)
                      .+++..+....+.. -  ....+...+||+.   +-..+.|.+||.++
T Consensus       259 wkvv~~I~~~G~gl-F--i~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  259 WKVVKTIPTQGGGL-F--IKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             TSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             CeEEEEEECCCCcc-e--eecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            56777766542221 1  1112345789999   67788999999864

...

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.70  E-value=3.5e-06  Score=77.83  Aligned_cols=152  Identities=16%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE------Ec-----------CCC------CCee
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA------RT-----------SPN------RNHI   80 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~------~~-----------~~~------~~~~   80 (268)
                      .++++.- ++..|.+|++.|||++|++....|+|.++++++.......      ..           .|+      ..++
T Consensus        21 ~~~~va~-GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        21 DKKVLLS-GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEEEC-CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            3455544 4889999999999998887766799999987543211111      00           011      1133


Q ss_pred             EEEeecC-------CcceEEEEeCC--CCe---EEEeecCC-----CCcceEEEccCCCEEEEEecC-------------
Q 024436           81 SVILSGD-------KTGRLMKYDPA--TKQ---VTVLLGNL-----SFPNGVALSEDGNYILLAETT-------------  130 (268)
Q Consensus        81 ~~~~~~~-------~~g~v~~~d~~--~~~---~~~~~~~~-----~~pnGia~spdg~~lyva~~~-------------  130 (268)
                      +...+..       ...+|.|+..+  +.+   .+.+..++     ++-..|+|+|||+ |||+-..             
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccCcc
Confidence            3333211       13567776543  111   23343333     3445799999995 9996332             


Q ss_pred             -------------------CcEEEEEEccCCCC-------C-ceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436          131 -------------------SCRILRYWLKTSKA-------G-TIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       131 -------------------~~~I~~~~~~~~~~-------g-~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                                         .++|+|++.+|.-.       + ..++++.---.|.|+++|++|.||+++++.+.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~~  252 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPNS  252 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCCC
Confidence                               23789999886311       0 12344432236999999999999999998753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.68  E-value=1.1e-07  Score=67.70  Aligned_cols=53  Identities=32%  Similarity=0.511  Sum_probs=48.1

Q ss_pred             cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           86 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      ..+.+.|..+|++  +.+.+++++.+||||+++||+++|||++...+.|++|+.+
T Consensus        32 ~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   32 GLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             cCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3577899999985  6888999999999999999999999999999999999865

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=8.5e-06  Score=74.35  Aligned_cols=147  Identities=18%  Similarity=0.259  Sum_probs=100.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEEcC---------CCCCeeEEEeecCCcce
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS---DGRIIKWHQDQRRWLHFARTS---------PNRNHISVILSGDKTGR   91 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~---~g~I~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~g~   91 (268)
                      .++.+.++.  .|.+++++++|+.+|+...   ++++..++............+         +.++.+  +......++
T Consensus       108 ~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v--yv~~~~~~~  183 (381)
T COG3391         108 VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV--YVTNSDDNT  183 (381)
T ss_pred             eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE--EEEecCCCe
Confidence            667777776  8999999999977776554   699999998766443332221         122222  223356788


Q ss_pred             EEEEeCCCCeEEE-----eecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCC-CCCceEEc
Q 024436           92 LMKYDPATKQVTV-----LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRS  163 (268)
Q Consensus        92 v~~~d~~~~~~~~-----~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d  163 (268)
                      |..+|.++..+..     .......|.+++++|||+.+||++..+  +++.+++..........  ..... .|.+++++
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~--~~~~~~~~~~v~~~  261 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD--LPVGSGAPRGVAVD  261 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec--cccccCCCCceeEC
Confidence            9999987555543     345567899999999999999999887  68998887643211100  01122 69999999


Q ss_pred             CCCC-EEEEEecCC
Q 024436          164 PRGG-FWVGIHSRR  176 (268)
Q Consensus       164 ~dG~-l~va~~~~~  176 (268)
                      |+|+ +|++....+
T Consensus       262 p~g~~~yv~~~~~~  275 (381)
T COG3391         262 PAGKAAYVANSQGG  275 (381)
T ss_pred             CCCCEEEEEecCCC
Confidence            9997 566655544

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.53  E-value=5.5e-06  Score=73.64  Aligned_cols=140  Identities=33%  Similarity=0.557  Sum_probs=93.8

Q ss_pred             CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc--CCC-----------------CCeeE-------EEee
Q 024436           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPN-----------------RNHIS-------VILS   85 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~--~~~-----------------~~~~~-------~~~~   85 (268)
                      .+.+||.+.+++.|.-.|+...+|+|+++...-..|..++..  +..                 |+...       ++.-
T Consensus        52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V  131 (376)
T KOG1520|consen   52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV  131 (376)
T ss_pred             ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence            467899999999998899999999999998764456666644  211                 12111       1111


Q ss_pred             cCCcceEEEEeCCCCeEEEee-----cCCCCcceEEEccCCCEEEEEecCC-----------------cEEEEEEccCCC
Q 024436           86 GDKTGRLMKYDPATKQVTVLL-----GNLSFPNGVALSEDGNYILLAETTS-----------------CRILRYWLKTSK  143 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~-----~~~~~pnGia~spdg~~lyva~~~~-----------------~~I~~~~~~~~~  143 (268)
                      .+..=.++.+++++++.+.+.     ..+.+.|++.++++| .+|++|+..                 +|+.+||.... 
T Consensus       132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK-  209 (376)
T KOG1520|consen  132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK-  209 (376)
T ss_pred             EecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCccc-
Confidence            122335678888866655543     235789999999976 699999844                 56777776531 


Q ss_pred             CCceeEEEe-CCCCCCceEEcCCCC-EEEEEecCC
Q 024436          144 AGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       144 ~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                        ..+++.+ | ..|+|+++.+|+. +.+|+....
T Consensus       210 --~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~  241 (376)
T KOG1520|consen  210 --VTKVLLDGL-YFPNGLALSPDGSFVLVAETTTA  241 (376)
T ss_pred             --chhhhhhcc-cccccccCCCCCCEEEEEeeccc
Confidence              2333433 4 3699999999997 555665553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.49  E-value=3.2e-06  Score=76.72  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=49.3

Q ss_pred             CCCcceEEEccCCCEEEEEecCC-------------------cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436          109 LSFPNGVALSEDGNYILLAETTS-------------------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~-------------------~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      ...+|++++.|||+ ||++....                   +.|+++++++.   ..+.++.--..|.|+++|++|++|
T Consensus       123 ~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rnp~Gl~~d~~G~l~  198 (367)
T TIGR02604       123 HHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQNPYGHSVDSWGDVF  198 (367)
T ss_pred             cccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCCCccceECCCCCEE
Confidence            35689999999995 99987621                   57999998863   345665422369999999999999


Q ss_pred             EEEecCC
Q 024436          170 VGIHSRR  176 (268)
Q Consensus       170 va~~~~~  176 (268)
                      +++....
T Consensus       199 ~tdn~~~  205 (367)
T TIGR02604       199 FCDNDDP  205 (367)
T ss_pred             EEccCCC
Confidence            9988554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=0.00019  Score=66.62  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=81.4

Q ss_pred             cceEEECCCCCEEE-EEe--CCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~-~~~--~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -...+++|||+.++ +..  .+..|+.++.++.....+..         .+|++..+...........||.+|.++++.+
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            34578999998654 443  35789999876543222221         1344443332223344567999999988887


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      .+...........|+|||+.|+++...  ...|++++++++.   .+.+....+.-...++.|||+..
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECCCCCEE
Confidence            776554455678999999988766432  3489999987642   23332222333457899999743

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.46  E-value=0.00011  Score=64.46  Aligned_cols=141  Identities=15%  Similarity=0.210  Sum_probs=85.0

Q ss_pred             cceEEECCCCCEEEEEeCC------------CeEEEEeCCCCeEE-EEEEc---CCCC---------------CeeEEEe
Q 024436           36 PESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRWL-HFART---SPNR---------------NHISVIL   84 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~------------g~I~~~~~~g~~~~-~~~~~---~~~~---------------~~~~~~~   84 (268)
                      ..++.+|+.|++++.+.+.            -+|+.++.....+. .+...   .+..               .-...++
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            4678899999988887631            37888887544322 22110   0100               0134455


Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCC--------------------CCcceEEEcc---CCCEEEEEecCCcEEEEEEcc-
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNL--------------------SFPNGVALSE---DGNYILLAETTSCRILRYWLK-  140 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~--------------------~~pnGia~sp---dg~~lyva~~~~~~I~~~~~~-  140 (268)
                      ++...+.|.++|..+++..++..+.                    ....||+++|   ||++||+.-..+.++++.+.+ 
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~  162 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV  162 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence            6666678999999887766543221                    1245789977   889999999888999999875 


Q ss_pred             --CCCCCc-------eeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          141 --TSKAGT-------IEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       141 --~~~~g~-------~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                        ......       .+.+.+-++..+|+++|++|+||.+....+
T Consensus       163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~  207 (287)
T PF03022_consen  163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN  207 (287)
T ss_dssp             HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT
T ss_pred             hhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC
Confidence              222111       122333224579999999999999998775

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.45  E-value=1.8e-05  Score=69.85  Aligned_cols=145  Identities=18%  Similarity=0.275  Sum_probs=99.7

Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-----CCCCCc
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-----PGFPDN  159 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-----~g~Pdg  159 (268)
                      .+-..++|+++++.+++.+.......++++..++.+| .|.+++..   +.+++.+.+.  ..+.+.+.     ...|+-
T Consensus        42 ~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g-~Lv~~~~g---~~~~~~~~~~--~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          42 VDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGG-RLIACEHG---VRLLDPDTGG--KITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             EeCCCCeEEEecCCcCceEEEECCCCcccceeecCCC-eEEEEccc---cEEEeccCCc--eeEEeccccCCCCcCCCCc
Confidence            4456789999999888888888777889999999887 58777743   4444444211  11444332     146899


Q ss_pred             eEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436          160 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR  239 (268)
Q Consensus       160 ia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~  239 (268)
                      ..+|++|++|++..... . .         +       .         ....+. +.+++++|+|..++.+.+.    +.
T Consensus       116 ~~v~pdG~~wfgt~~~~-~-~---------~-------~---------~~~~~~-G~lyr~~p~g~~~~l~~~~----~~  163 (307)
T COG3386         116 GVVDPDGRIWFGDMGYF-D-L---------G-------K---------SEERPT-GSLYRVDPDGGVVRLLDDD----LT  163 (307)
T ss_pred             eeEcCCCCEEEeCCCcc-c-c---------C-------c---------cccCCc-ceEEEEcCCCCEEEeecCc----EE
Confidence            99999999999887631 0 0         0       0         012344 6799999999888887652    22


Q ss_pred             ceEEEE--EeCCEEEEeeCCCCeEEEEeCC
Q 024436          240 SISEVE--EKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       240 ~~s~~~--~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+.+++  .++..||++....++|.+++++
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            222333  3455899999999999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.42  E-value=0.0003  Score=60.22  Aligned_cols=150  Identities=13%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             CEEEEecCCC-CCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEEcCCCC--------CeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGA-IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNR--------NHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~-~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~g~v~   93 (268)
                      .|+..++++. ..+.||+++||.+.+++ ..+.+.|+.++.+|+.+......+-+.        +-...+ .....++++
T Consensus        11 ~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~Er~~~L~   89 (248)
T PF06977_consen   11 VIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVL-SEERDQRLY   89 (248)
T ss_dssp             EEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEE-EETTTTEEE
T ss_pred             EEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEE-EEcCCCcEE
Confidence            4556678875 45999999998665555 556799999999988554433221110        001112 233456666


Q ss_pred             EEeC--CCCeE-----EEeecCC-----CCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEe--CC----
Q 024436           94 KYDP--ATKQV-----TVLLGNL-----SFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ--LP----  154 (268)
Q Consensus        94 ~~d~--~~~~~-----~~~~~~~-----~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~--l~----  154 (268)
                      .++.  .+..+     +.+.-++     ..-.||+++|.++.||++.-. ..+|+.++..... ........  +.    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeeccccccccccc
Confidence            5544  32222     1121111     223699999998889987433 3467776652110 01111111  10    


Q ss_pred             --CCCCceEEcCC-CCEEEEEecC
Q 024436          155 --GFPDNIKRSPR-GGFWVGIHSR  175 (268)
Q Consensus       155 --g~Pdgia~d~d-G~l~va~~~~  175 (268)
                        .-|-++++|+. |+||+-...+
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTT
T ss_pred             eeccccceEEcCCCCeEEEEECCC
Confidence              24778888875 4576654444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=0.00027  Score=65.87  Aligned_cols=132  Identities=17%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             eEEECCCCCEEE-EEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           38 SLAFDALGEGPY-TGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        38 gia~~~dG~~l~-~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      ..+++|||+.++ +...+  .+|+.++.++.......         ..+|++.++.-.........||.+|.++++.+.+
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l  301 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI  301 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC
Confidence            678999998664 44433  46888887653222221         1234444443223334445799999998888777


Q ss_pred             ecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEE
Q 024436          106 LGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGI  172 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~  172 (268)
                      ..........+|+|||+.|+++..  ....|++++++++.   .+.+..-.....+.++++||+. +.+.
T Consensus       302 t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        302 TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEecCCCCCcCeeECCCCCEEEEEE
Confidence            665555667899999998877653  23578888887533   2222111122345689999974 4433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=0.00036  Score=64.73  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             ceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           37 ESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        37 ~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      .+.+++|||+.++. ...  ..+|++++.++.....+.         ..++++..+...........||.+|.++++.+.
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            35688999986554 332  357888887654322221         113444444322233445689999999888877


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v  170 (268)
                      +..........+|+|||+.|+++...  ...|+.++++++.   .+.+..........++.+||+..+
T Consensus       287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCCCEEE
Confidence            66554444578999999988776432  3468888886532   222221122344689999997433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.32  E-value=2.4e-05  Score=70.04  Aligned_cols=142  Identities=22%  Similarity=0.248  Sum_probs=85.7

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------------C---CCCeeEEEeec------C
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------------P---NRNHISVILSG------D   87 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------------~---~~~~~~~~~~~------~   87 (268)
                      |+.|.++++.|||+++++. ..|+|+++..+|.....+....                |   ...+++...+.      .
T Consensus         1 L~~P~~~a~~pdG~l~v~e-~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAE-RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEE-TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEe-CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            3579999999999976654 4999999997776312222210                1   01233333221      1


Q ss_pred             CcceEEEEeCCCC--e---EEEee-------cCCCCcceEEEccCCCEEEEEec-------------CCcEEEEEEccCC
Q 024436           88 KTGRLMKYDPATK--Q---VTVLL-------GNLSFPNGVALSEDGNYILLAET-------------TSCRILRYWLKTS  142 (268)
Q Consensus        88 ~~g~v~~~d~~~~--~---~~~~~-------~~~~~pnGia~spdg~~lyva~~-------------~~~~I~~~~~~~~  142 (268)
                      ...+|.|+..+.+  .   .+.+.       ...+...+|+|+||| .|||+-.             ..++|.|++.++.
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCc
Confidence            2246666644322  1   22222       134555789999999 7999753             2368999998863


Q ss_pred             C------C----CceeEEEeCCCCCCceEEcCC-CCEEEEEecCC
Q 024436          143 K------A----GTIEIVAQLPGFPDNIKRSPR-GGFWVGIHSRR  176 (268)
Q Consensus       143 ~------~----g~~~~~~~l~g~Pdgia~d~d-G~l~va~~~~~  176 (268)
                      .      .    ...++++.---.|-++++|+. |+||+++.+..
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~  203 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD  203 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred             CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence            1      0    123556542125899999999 99999998765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00087  Score=62.10  Aligned_cols=129  Identities=17%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             eEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           38 SLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        38 gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      ..+++|||+.++. ...  ...|+.++.++.....+.         ..+|++..+...........||.+|.++++.+.+
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l  279 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL  279 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence            5689999987654 333  356888887644222221         1234444443223334456799999887777766


Q ss_pred             ecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436          106 LGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      ...........|+|||++|+++..  ....|+.++.+++.   .+.+....+.....++++||+..
T Consensus       280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~SpDG~~I  342 (427)
T PRK02889        280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRISPDGKLL  342 (427)
T ss_pred             CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEECCCCCEE
Confidence            544334456789999998876532  23477777776532   22222111223457899999743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.28  E-value=0.00013  Score=62.53  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=81.5

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC--CCCeE-----EEEEE-cC--CCC-----------Cee
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ--DQRRW-----LHFAR-TS--PNR-----------NHI   80 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~--~g~~~-----~~~~~-~~--~~~-----------~~~   80 (268)
                      .+-++.+++.+..-||||++..+|.+++++-.+++++.++.  +++..     ..+.. ..  .+.           +-+
T Consensus        53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L  132 (248)
T PF06977_consen   53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRL  132 (248)
T ss_dssp             --EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEE
Confidence            34678899998888999999988876665555788887764  32211     11110 11  111           111


Q ss_pred             EEEeecCCcceEEEEeC--CCCeEEEee--------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE
Q 024436           81 SVILSGDKTGRLMKYDP--ATKQVTVLL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        81 ~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~  150 (268)
                      ... .......||.++.  .........        ..+.-|.+++++|..++||+-...+++|..++.+|.    ....
T Consensus       133 ~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~----~~~~  207 (248)
T PF06977_consen  133 FVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR----VVSS  207 (248)
T ss_dssp             EEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEE
T ss_pred             EEE-eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC----EEEE
Confidence            111 2234456777765  212222211        123457899999998899999889999999997763    2222


Q ss_pred             EeCC----------CCCCceEEcCCCCEEEEEecC
Q 024436          151 AQLP----------GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       151 ~~l~----------g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ..|.          ..|-|||+|++|+|||+.-++
T Consensus       208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             EE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             EEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            2221          159999999999999988755

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.00098  Score=61.83  Aligned_cols=131  Identities=14%  Similarity=0.090  Sum_probs=80.0

Q ss_pred             ceEEECCCCCEEE-EEe--CCCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           37 ESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        37 ~gia~~~dG~~l~-~~~--~~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++|||+.++ +..  .+..|+.++.++.......         ..+|++.++.-.........||.+|.++++.+.
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            4789999998664 333  2457877776543222211         123444444322222334479999999888887


Q ss_pred             eecCCCCcceEEEccCCCEEEEE-ecC-CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436          105 LLGNLSFPNGVALSEDGNYILLA-ETT-SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva-~~~-~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v  170 (268)
                      +...........|+|||+.|+++ +.. ..+|++++++++.   .+.+....+.....++.|||+.++
T Consensus       282 lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        282 VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCCCEEE
Confidence            76654456689999999977554 432 3478888887632   233322222345678999997544

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.26  E-value=3e-05  Score=77.40  Aligned_cols=135  Identities=24%  Similarity=0.332  Sum_probs=82.3

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC----C-------------CeeEEEee--------cC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN----R-------------NHISVILS--------GD   87 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~----~-------------~~~~~~~~--------~~   87 (268)
                      +..|.||+++.+|.+|+++  .-+|.++|.+|- +.......+.    +             .|-.++.-        --
T Consensus       474 L~~PkGIa~dk~g~lYfaD--~t~IR~iD~~gi-Istlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vl  550 (1899)
T KOG4659|consen  474 LIFPKGIAFDKMGNLYFAD--GTRIRVIDTTGI-ISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVL  550 (1899)
T ss_pred             eccCCceeEccCCcEEEec--ccEEEEeccCce-EEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEe
Confidence            6789999999999988773  245666677764 2333222111    0             01111100        11


Q ss_pred             CcceEEEEeCCCCeEEEeec---------------------CCCCcceEEEccCCCEEEEEecCCcEEEEEE---ccCCC
Q 024436           88 KTGRLMKYDPATKQVTVLLG---------------------NLSFPNGVALSEDGNYILLAETTSCRILRYW---LKTSK  143 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~---------------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~---~~~~~  143 (268)
                      .++-|+++++. ++++...+                     .+..|..|+++++| .|||+|+...+|-+..   .+|  
T Consensus       551 d~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~~~tdg--  626 (1899)
T KOG4659|consen  551 DTNVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRKLSTDG--  626 (1899)
T ss_pred             ecceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEEeccCc--
Confidence            34556677666 66654321                     12356789999999 6999999887655543   333  


Q ss_pred             CCceeEEEe-----------------C---------CCCCCceEEcCCCCEEEEEecCC
Q 024436          144 AGTIEIVAQ-----------------L---------PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       144 ~g~~~~~~~-----------------l---------~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                        +...++.                 +         -.-|..+|+.|||.+++|+.++-
T Consensus       627 --~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~  683 (1899)
T KOG4659|consen  627 --TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNS  683 (1899)
T ss_pred             --eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCch
Confidence              1111111                 0         02499999999999999998875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.00016  Score=67.43  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=79.1

Q ss_pred             ceEEECCCCCEEEE-EeCCC--eEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           37 ESLAFDALGEGPYT-GVSDG--RIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        37 ~gia~~~dG~~l~~-~~~~g--~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++|||+.++. ...+|  +|+.++.++........         .++++.++.-.........||++|.++++.+.
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~  344 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR  344 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            35789999996654 44444  58888876553332211         13344443322222344589999998888776


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEe
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~  173 (268)
                      +........+.+|+|||+.||++....  .+|++++++++.   ...+... ..-....+++||+ ++.+..
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccCC-CCCCCceECCCCCEEEEEEe
Confidence            643333345679999999998876544  378888887632   2222211 1122347889997 444443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00074  Score=62.65  Aligned_cols=81  Identities=16%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....||.+|.++++.+.+...-......+|+|||+.|+++...  ...|++++++++.   ...+...++.....++++|
T Consensus       224 g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spD  300 (435)
T PRK05137        224 GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPD  300 (435)
T ss_pred             CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEccCCCCccCceeEcCC
Confidence            4578999999888776665332333478999999988776443  3579999987632   2333222333456788999


Q ss_pred             CC-EEEE
Q 024436          166 GG-FWVG  171 (268)
Q Consensus       166 G~-l~va  171 (268)
                      |+ ++.+
T Consensus       301 G~~i~f~  307 (435)
T PRK05137        301 GSQIVFE  307 (435)
T ss_pred             CCEEEEE
Confidence            97 4433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.23  E-value=0.0001  Score=65.18  Aligned_cols=101  Identities=21%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC---------cEEEEEEccCCCCCceeEEE--eCC---
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------CRILRYWLKTSKAGTIEIVA--QLP---  154 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~---------~~I~~~~~~~~~~g~~~~~~--~l~---  154 (268)
                      .++++.+|.+++++.-..+....+| ++++|||+.+|++++.=         .-|..||..+     .....  .+|   
T Consensus        16 ~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI~iP~k~   89 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEIEIPPKP   89 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEEEETTS-
T ss_pred             cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceEecCCcc
Confidence            4799999999888776665555566 88999999999998732         2466677653     12211  123   


Q ss_pred             -----CCCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeecccc
Q 024436          155 -----GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPID  199 (268)
Q Consensus       155 -----g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~  199 (268)
                           .++..+++..||+ +||.+......    |.+ ....++++..++.|
T Consensus        90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S----VtVVDl~~~kvv~ei~~P  137 (342)
T PF06433_consen   90 RAQVVPYKNMFALSADGKFLYVQNFTPATS----VTVVDLAAKKVVGEIDTP  137 (342)
T ss_dssp             B--BS--GGGEEE-TTSSEEEEEEESSSEE----EEEEETTTTEEEEEEEGT
T ss_pred             hheecccccceEEccCCcEEEEEccCCCCe----EEEEECCCCceeeeecCC
Confidence                 2567888999997 78888776543    433 35778999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.20  E-value=2.2e-06  Score=47.72  Aligned_cols=28  Identities=32%  Similarity=0.736  Sum_probs=25.1

Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEE
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRY  137 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~  137 (268)
                      +..|.||+++++| .|||+|+.+++|++|
T Consensus         1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            3579999999888 599999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=0.0031  Score=58.37  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             eEEECCCCC--EEEEEeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           38 SLAFDALGE--GPYTGVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        38 gia~~~dG~--~l~~~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...++|||+  ++|+...  +..|+.++..+.....+.         ..+|++..+.-......+..||.+|.++++.+.
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            568899997  4445554  467888887543222221         224555444333333456789999988787777


Q ss_pred             eecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v  170 (268)
                      +...-..-....|+|||+.||++..  ....|++++++++.   .+.+... +. .+..++|||+..+
T Consensus       272 LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~rlt~~-g~-~~~~~SPDG~~Ia  334 (419)
T PRK04043        272 ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQVVFH-GK-NNSSVSTYKNYIV  334 (419)
T ss_pred             cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEeCccC-CC-cCceECCCCCEEE
Confidence            6543322234589999998888753  23389999998643   2222211 22 2358999998433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.0031  Score=58.31  Aligned_cols=130  Identities=17%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             ceEEECCCCCEE-EEEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           37 ESLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        37 ~gia~~~dG~~l-~~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++|||+.+ |+...+  .+|+.++.++.....+.         ..+|++.++.-.........||.+|.++++.+.
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  281 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR  281 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            566899999866 444433  46888887643222211         123444444322233344589999999888877


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      +...........|+|||+.||++...  ...|++++++++.   .+.+..........++++||+..
T Consensus       282 lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        282 VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccceEECCCCCEE
Confidence            76544445568999999988776432  3479998887532   22222111233456889999743

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.16  E-value=0.0014  Score=56.93  Aligned_cols=211  Identities=16%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             EecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-----CCe--EEEEEEcCCC-----C----------Ce------
Q 024436           28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-----QRR--WLHFARTSPN-----R----------NH------   79 (268)
Q Consensus        28 i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-----g~~--~~~~~~~~~~-----~----------~~------   79 (268)
                      .--+.+..|+||++.|.|.+++++..++....++.+     |..  +....-..++     .          .|      
T Consensus        17 ~tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g   96 (336)
T TIGR03118        17 IVDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG   96 (336)
T ss_pred             ccCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence            344568899999999999988888888888777765     321  1111100000     0          01      


Q ss_pred             ---eEEEeecCCcceEEEEeCCCCeE-----EEeecC---CCCcceEEEccC--CCEEEEEecCCcEEEEEEccCCCCCc
Q 024436           80 ---ISVILSGDKTGRLMKYDPATKQV-----TVLLGN---LSFPNGVALSED--GNYILLAETTSCRILRYWLKTSKAGT  146 (268)
Q Consensus        80 ---~~~~~~~~~~g~v~~~d~~~~~~-----~~~~~~---~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~~~~g~  146 (268)
                         ...++.....|.|--|.|.-+..     ..+.+.   ...=.|+|+...  +.+||.+|..+++|-+||-.-.++..
T Consensus        97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118        97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence               01122334567777666542211     012221   122247777743  67999999999999999755322211


Q ss_pred             eeEEEe--CCC--CCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECC
Q 024436          147 IEIVAQ--LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISE  222 (268)
Q Consensus       147 ~~~~~~--l~g--~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (268)
                      ...|.+  +|.  -|-||.-- .|+|||+.-.....           ++  ..++            ..-. +.+-+++.
T Consensus       177 ~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~-----------~~--d~v~------------G~G~-G~VdvFd~  229 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD-----------RN--DEVA------------GAGL-GYVNVFTL  229 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-----------cc--cccc------------CCCc-ceEEEEcC
Confidence            122433  342  47788654 47899976543310           10  0111            1122 67889999


Q ss_pred             CCCEEEEEEcCCCCceeceEEEEE-------eCCEEEEeeCCCCeEEEEeCC
Q 024436          223 QGNVLEILEEIGRKMWRSISEVEE-------KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       223 ~G~~~~~~~~~~g~~~~~~s~~~~-------~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +|+.++.+...  ..+..+=+++.       ..+.|+||++.+.+|..+|..
T Consensus       230 ~G~l~~r~as~--g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       230 NGQLLRRVASS--GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             CCcEEEEeccC--CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence            99999988653  33444434332       348899999999999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.15  E-value=0.0032  Score=52.54  Aligned_cols=136  Identities=24%  Similarity=0.337  Sum_probs=84.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQ-V  102 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~  102 (268)
                      ....+++++|++++++++..+|.|..++.+... ...+..         ..++.+++   ......+.++.++..+++ .
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL---ASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEE---EEEcCCCeEEEEEcCcccce
Confidence            467889999999999988889999888765431 111110         01121122   233446788888887543 3


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ..+.........+.++++++ ++++....+.|..|++....  ....+......+..+++++++.++++....
T Consensus        87 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          87 RTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             EEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence            33443444678899999976 55565567899999987321  112222122346788999988877766533

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00049  Score=63.86  Aligned_cols=127  Identities=14%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             eEEECCCCCEEEE-EeCC--CeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           38 SLAFDALGEGPYT-GVSD--GRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        38 gia~~~dG~~l~~-~~~~--g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      .++++|||+.++. ...+  ..|+.++.++.....+..         .++++.++.-.........||.++.++++.+.+
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l  331 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL  331 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            5789999986653 3333  469988876543332211         123333332111112234699999877777666


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  168 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l  168 (268)
                      .........++|+|||+.|+++....  .+|+.++++++.   ...+... .......+.+||+.
T Consensus       332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~-~~~~~p~~spdG~~  392 (433)
T PRK04922        332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG-SLDESPSFAPNGSM  392 (433)
T ss_pred             ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCCC-CCCCCceECCCCCE
Confidence            54334455789999999998875433  379999987532   2322221 12345688999973

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.09  E-value=0.0043  Score=56.84  Aligned_cols=132  Identities=20%  Similarity=0.140  Sum_probs=77.6

Q ss_pred             ceEEECCCCCEEEEEe-C--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           37 ESLAFDALGEGPYTGV-S--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~-~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++|||+.++... .  ...|+.++..+.......         ..++++..+.-.........||.+|.++++.+.
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence            3457899999776543 2  357888886543222221         113343333222232344579999998777776


Q ss_pred             eecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      +...........|+|||++|+++..  ....|++++++++.   ...+..........+++++|+.++.
T Consensus       273 l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       273 LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECCCCCEEEE
Confidence            6544333446789999998866543  23479999887532   2222222234557789999975443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.06  E-value=2e-05  Score=56.39  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=42.9

Q ss_pred             ceEEEccCCCEEEEEec-----------------CCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEEEEe
Q 024436          113 NGVALSEDGNYILLAET-----------------TSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       113 nGia~spdg~~lyva~~-----------------~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~  173 (268)
                      |++++++++..+|+||+                 .++|+++|++.+   ++.+++.+ |. +|+|+++++|+. ++|++.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~L~-fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDGLY-FPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEEES-SEEEEEE-TTSSEEEEEEG
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhCCC-ccCeEEEcCCCCEEEEEec
Confidence            78999999557999998                 347999999975   33556655 54 799999999997 777887


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ...
T Consensus        77 ~~~   79 (89)
T PF03088_consen   77 GRY   79 (89)
T ss_dssp             GGT
T ss_pred             cCc
Confidence            665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.06  E-value=0.0003  Score=70.61  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=78.2

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC---Ce-e-------EEEeecCCcceEEEEeCCC--
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR---NH-I-------SVILSGDKTGRLMKYDPAT--   99 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~---~~-~-------~~~~~~~~~g~v~~~d~~~--   99 (268)
                      +-.|..+|..|||.+++-+.  +.|.|+.++|+. ......+..+   .| +       ..++++....+|||+..-.  
T Consensus       364 L~aPvala~a~DGSl~VGDf--NyIRRI~~dg~v-~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~  440 (1899)
T KOG4659|consen  364 LFAPVALAYAPDGSLIVGDF--NYIRRISQDGQV-STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ  440 (1899)
T ss_pred             eeceeeEEEcCCCcEEEccc--hheeeecCCCce-EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcc
Confidence            45789999999999554322  578888999984 3322222111   11 1       1122333444566552211  


Q ss_pred             ---CeEEEee---------------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC--CC-Cc----ee
Q 024436          100 ---KQVTVLL---------------------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KA-GT----IE  148 (268)
Q Consensus       100 ---~~~~~~~---------------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~--~~-g~----~~  148 (268)
                         +..++++                     ..+.+|.||+|+.+| .||++|.  -+|.++|.+|-  ++ |+    ..
T Consensus       441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g-~lYfaD~--t~IR~iD~~giIstlig~~~~~~~  517 (1899)
T KOG4659|consen  441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG-NLYFADG--TRIRVIDTTGIISTLIGTTPDQHP  517 (1899)
T ss_pred             ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC-cEEEecc--cEEEEeccCceEEEeccCCCCccC
Confidence               1122221                     235799999999999 5999986  47888887651  00 00    00


Q ss_pred             EE-Ee----CC----CCCCceEEcC-CCCEEEEEec
Q 024436          149 IV-AQ----LP----GFPDNIKRSP-RGGFWVGIHS  174 (268)
Q Consensus       149 ~~-~~----l~----g~Pdgia~d~-dG~l~va~~~  174 (268)
                      +. ++    +.    -.|..+|+|| |+.|||-+..
T Consensus       518 p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n  553 (1899)
T KOG4659|consen  518 PRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN  553 (1899)
T ss_pred             ccccccccchhheeeecccceeecCCCCeEEEeecc
Confidence            00 00    00    2699999999 6678886643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.0038  Score=57.88  Aligned_cols=78  Identities=17%  Similarity=0.068  Sum_probs=51.6

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....|+.++.++|+.+.+...-.....++|+|||+.|+++...  ...|+.++++++.   ...+...+......++.||
T Consensus       221 g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPD  297 (429)
T PRK03629        221 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPD  297 (429)
T ss_pred             CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCCCCCcCceEECCC
Confidence            4457899998888776665332233468999999999887443  3479999987532   3333222233457789999


Q ss_pred             CCE
Q 024436          166 GGF  168 (268)
Q Consensus       166 G~l  168 (268)
                      |+.
T Consensus       298 G~~  300 (429)
T PRK03629        298 SQN  300 (429)
T ss_pred             CCE
Confidence            973

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.0047  Score=57.22  Aligned_cols=78  Identities=22%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....||.+|.++++.+.+...-......+|+|||+.|+++-..  ..+|+.++.+++.   ...+....+.....++++|
T Consensus       218 ~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpD  294 (427)
T PRK02889        218 KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPD  294 (427)
T ss_pred             CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCC
Confidence            3457999999888776664322233478999999988875433  3478888876532   2222222233445689999


Q ss_pred             CCE
Q 024436          166 GGF  168 (268)
Q Consensus       166 G~l  168 (268)
                      |+.
T Consensus       295 G~~  297 (427)
T PRK02889        295 GRS  297 (427)
T ss_pred             CCE
Confidence            973

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.98  E-value=0.0036  Score=52.24  Aligned_cols=136  Identities=21%  Similarity=0.227  Sum_probs=85.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...++.+.+++++++++..++.|..++.. ++....+..         ..+...++   ......+.|..+|..+++...
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~~~i~i~d~~~~~~~~  171 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV---ASSSQDGTIKLWDLRTGKCVA  171 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE---EEEcCCCcEEEEEccccccce
Confidence            67889999999978777779999999876 332222210         01111222   122346788888887554433


Q ss_pred             e-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 ~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      . .......+.++++|+++.++++.. .+.|..|++.....  ...+....+....+++++++.++++....+
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            3 333335789999999987877765 78999999874211  111211223567889999988877766333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0053  Score=56.88  Aligned_cols=131  Identities=17%  Similarity=0.101  Sum_probs=77.5

Q ss_pred             cceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -..++++|||+.++. ...  +.+|+.++..+.....+.         ..+|++.++.......+.-.||.+|.++++.+
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~  285 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS  285 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence            456799999987654 333  347888887543211111         11344444432222334447999998878777


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEE
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~  172 (268)
                      .+..+.......+|+|||+.|+++...  .-+|+.++.++..   ...+ ...+  ...++.|||+..+..
T Consensus       286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YSAQISADGKTLVMI  350 (429)
T ss_pred             eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CCccCCCCCCEEEEE
Confidence            776554556689999999987766433  3466766665422   2222 2112  346788999754433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.96  E-value=0.0029  Score=60.60  Aligned_cols=153  Identities=19%  Similarity=0.321  Sum_probs=103.3

Q ss_pred             hhhcCC--CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcCCCC-Ce--------eEEEee
Q 024436           18 INSSTQ--GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSPNR-NH--------ISVILS   85 (268)
Q Consensus        18 ~~~~~~--~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~~~~-~~--------~~~~~~   85 (268)
                      +|.++.  |+.++.-+ ..+-.++.|...|+.+++..-||+|..||... +.+..|.  .|.+ ++        ...++.
T Consensus       376 vWn~~SgfC~vTFteH-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  376 VWNTQSGFCFVTFTEH-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             EEeccCceEEEEeccC-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEEcCCCCEEEe
Confidence            355555  78888877 46789999999999999999999999998653 2223321  1111 00        111223


Q ss_pred             cCCcc-eEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436           86 GDKTG-RLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  163 (268)
Q Consensus        86 ~~~~g-~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d  163 (268)
                      +..+. .|+.++-+||++..+..+-..| .|+.|+|+|+ +.++.++...|..|++=.. .++.+.+. +....-++++.
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfr  529 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFR  529 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe-eccceeEEEEc
Confidence            33333 6888999999877666665555 6899999998 5568889999999998532 12344432 33345688889


Q ss_pred             CCCC-EEEEEecCC
Q 024436          164 PRGG-FWVGIHSRR  176 (268)
Q Consensus       164 ~dG~-l~va~~~~~  176 (268)
                      |||. |.|+.-.+.
T Consensus       530 PdG~elaVaTldgq  543 (893)
T KOG0291|consen  530 PDGKELAVATLDGQ  543 (893)
T ss_pred             CCCCeEEEEEecce
Confidence            9995 777776653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.96  E-value=0.0018  Score=59.40  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=81.8

Q ss_pred             cceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ...++++|||+.++. ...  +..|+.++.++.....+..         ..+++.++.-.........||.+|.++++.+
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            346789999986654 333  3468888876543222211         1223333322212223447999999878777


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecC
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR  175 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~  175 (268)
                      .+.........++++|||+.|+++....  .+|+.++++++   ....+.. .......++.+||+ |+.+....
T Consensus       316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD-TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC-CCCCCCceECCCCCEEEEEEeCC
Confidence            7765556667889999999998887643  37888888752   2232222 12334568888986 44444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.95  E-value=0.00072  Score=64.39  Aligned_cols=86  Identities=14%  Similarity=-0.007  Sum_probs=49.7

Q ss_pred             EEEecCCCCCcceEEEC--CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           26 VQYQIEGAIGPESLAFD--ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~--~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      +.+.+|..++.+|+++.  |.-. |+......+| -+.+||+.+.             +.  ..-.+.+..+|.++.++.
T Consensus       166 ~i~~iPn~~~~Hg~~~~~~p~t~-yv~~~~e~~~-PlpnDGk~l~-------------~~--~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        166 KITELPNVQGIHGLRPQKIPRTG-YVFCNGEFRI-PLPNDGKDLD-------------DP--KKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             eeEeCCCccCccccCccccCCcc-EEEeCccccc-ccCCCCCEee-------------cc--cceeEEEEEEECccceEE
Confidence            34456666778888887  4444 3332222222 2344554211             11  123456778888866553


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEe
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAE  128 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~  128 (268)
                      ....-...|.+++++|||+++|++.
T Consensus       229 ~qV~Vdgnpd~v~~spdGk~afvTs  253 (635)
T PRK02888        229 WQVMVDGNLDNVDTDYDGKYAFSTC  253 (635)
T ss_pred             EEEEeCCCcccceECCCCCEEEEec
Confidence            3322334788999999999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.01  Score=51.38  Aligned_cols=223  Identities=10%  Similarity=0.086  Sum_probs=124.7

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc--CCCC-Cee-----EEEeecCCcceEEEEeCCCCe-EE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART--SPNR-NHI-----SVILSGDKTGRLMKYDPATKQ-VT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~--~~~~-~~~-----~~~~~~~~~g~v~~~d~~~~~-~~  103 (268)
                      ..++.+.++++|..+.+..+|+.+..++. +|+....+...  +.+. .|.     ....+...+..|..++..+.+ ++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR   94 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR   94 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence            47999999999999999888889888875 55543332211  1110 000     011111233455555554444 44


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeee
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV  183 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v  183 (268)
                      ...++-..-|.|..+|-++ .|++.+..+.|.-||+...+   -.....+.+ +--.|+||+|-++++..+...     |
T Consensus        95 YF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~---cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~-----I  164 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK---CQGLLNLSG-RPIAAFDPEGLIFALANGSEL-----I  164 (311)
T ss_pred             EcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC---CceEEecCC-CcceeECCCCcEEEEecCCCe-----E
Confidence            4556666789999999986 78899999999999987322   222233443 447799999988877766532     3


Q ss_pred             EeeC---ccceeeeecccc--c-eeeeee--ccc------cCCCcEEEEEECC-CCCEEEEEEcCCCC-ceeceEEEEEe
Q 024436          184 LSFP---WIGNVLIKLPID--I-VKIHSS--LVK------LSGNGGMAMRISE-QGNVLEILEEIGRK-MWRSISEVEEK  247 (268)
Q Consensus       184 ~~~~---~~g~~l~~i~~~--~-~~~~~~--~~~------~~~~~~~~~~~~~-~G~~~~~~~~~~g~-~~~~~s~~~~~  247 (268)
                      ..|.   .++.-...+..+  . ...+.+  -+.      .+.. +.+..+|. +|.+..++....+. .++ .+.....
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftP  242 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTP  242 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECC
Confidence            3332   111111111111  1 000000  000      0111 33444444 56666666544322 122 3333447


Q ss_pred             CCEEEEeeCCCCeEEEEeCCC
Q 024436          248 DGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       248 ~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +++..+++..+.+|.+.++++
T Consensus       243 ds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CCcEEEEecCCCcEEEEEcCC
Confidence            888888888888888887653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.0056  Score=56.60  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....||.+|.++++.+.+...-......+|+|||+.|+++...  ...|++++++++.   ...+...++......+++|
T Consensus       221 ~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spD  297 (430)
T PRK00178        221 KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKD  297 (430)
T ss_pred             CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECCC
Confidence            3457999999988777665332233468999999988876433  3489999988643   2323222233445688999


Q ss_pred             CC-EEEEE
Q 024436          166 GG-FWVGI  172 (268)
Q Consensus       166 G~-l~va~  172 (268)
                      |+ ++.+.
T Consensus       298 g~~i~f~s  305 (430)
T PRK00178        298 GRTLYFTS  305 (430)
T ss_pred             CCEEEEEE
Confidence            97 44443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.90  E-value=0.0072  Score=51.06  Aligned_cols=151  Identities=18%  Similarity=0.279  Sum_probs=96.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCC-----CeeEEEeecCCcceEEEEeC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNR-----NHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~-----~~~~~~~~~~~~g~v~~~d~   97 (268)
                      -+.++..+ .+.-..+.|.-||+.+|++.+||.+..|+..... -..+...++-.     +...+++.++..|.|..+|.
T Consensus        75 Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   75 PVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             ceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            45555544 2467788999999999999999999888765321 01111111110     12346667788899999998


Q ss_pred             CCCeE--EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEeC---CCCCCceEEcCCCCEEEE
Q 024436           98 ATKQV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQL---PGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus        98 ~~~~~--~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~l---~g~Pdgia~d~dG~l~va  171 (268)
                      .+...  +.+.+....-..+++.|||++| ++-...++.++|++-+. .....+++..+   .++---..+.||++++++
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat  232 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT  232 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence            75432  2234555666789999999855 56667889999998653 22223332222   234445677898888887


Q ss_pred             EecCC
Q 024436          172 IHSRR  176 (268)
Q Consensus       172 ~~~~~  176 (268)
                      +....
T Consensus       233 ~ssdk  237 (311)
T KOG0315|consen  233 CSSDK  237 (311)
T ss_pred             ecCCc
Confidence            76654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.87  E-value=0.015  Score=50.94  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=115.6

Q ss_pred             ecCCCCCcceEEECC-CCCEEEEEeC-CCeEEEEeCCCCeEEE------------EEEcCCCCCeeEEE--eecCCcceE
Q 024436           29 QIEGAIGPESLAFDA-LGEGPYTGVS-DGRIIKWHQDQRRWLH------------FARTSPNRNHISVI--LSGDKTGRL   92 (268)
Q Consensus        29 ~~~~~~~P~gia~~~-dG~~l~~~~~-~g~I~~~~~~g~~~~~------------~~~~~~~~~~~~~~--~~~~~~g~v   92 (268)
                      ++|.  ..++++++| ++..++.... ....+.++..+.....            -+..++++.+++..  -.....|.|
T Consensus         2 ~lP~--RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    2 PLPA--RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             CCCc--cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence            4454  567777777 3443333332 2333344543321111            11223444444332  123456889


Q ss_pred             EEEeCCCC--eEEEeecCCCCcceEEEccCCCEEEEEecCCc-----------------EEEEEEccCCCCCceeEEEeC
Q 024436           93 MKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSC-----------------RILRYWLKTSKAGTIEIVAQL  153 (268)
Q Consensus        93 ~~~d~~~~--~~~~~~~~~~~pnGia~spdg~~lyva~~~~~-----------------~I~~~~~~~~~~g~~~~~~~l  153 (268)
                      -++|...+  ++.....+.--|.-|.+.|||++|.|++..=.                 .+...+...+.+  .+. ..+
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l--l~q-~~L  156 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL--LEQ-VEL  156 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce--eee-eec
Confidence            99998721  23334455667999999999999999985221                 222222221111  000 112


Q ss_pred             CC-----CCCceEEcCCCCEEEEEecCCCc--ceeeeEeeCccceeeeeccccc------eeee-eeccccCCCcEEEEE
Q 024436          154 PG-----FPDNIKRSPRGGFWVGIHSRRKG--ISKLVLSFPWIGNVLIKLPIDI------VKIH-SSLVKLSGNGGMAMR  219 (268)
Q Consensus       154 ~g-----~Pdgia~d~dG~l~va~~~~~~~--~~~~v~~~~~~g~~l~~i~~~~------~~~~-~~~~~~~~~~~~~~~  219 (268)
                      |-     --+-++++++|.+|.++...+-.  ..-.|..+...+. +..++.|.      +.+. ++.  .......+.+
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa--~~~~g~~ia~  233 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIA--ADRDGRLIAV  233 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEE--EeCCCCEEEE
Confidence            10     14578999999999988654321  1112333433332 33333321      1111 111  1122135667


Q ss_pred             ECCCCCEEEEEEcCCCCc-----eeceEEEEEeCCEEEEeeCCCCeEEEEe
Q 024436          220 ISEQGNVLEILEEIGRKM-----WRSISEVEEKDGNLWIGSVNMPYAGLYN  265 (268)
Q Consensus       220 ~~~~G~~~~~~~~~~g~~-----~~~~s~~~~~~g~Lyv~s~~~~~v~~~~  265 (268)
                      -+|.|..+.+++..+|+.     ++..++++..++. |+.+.....+..+.
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCccEEEcc
Confidence            777888888887777754     3445566665545 55555555555543

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.87  E-value=0.00033  Score=67.52  Aligned_cols=152  Identities=13%  Similarity=0.041  Sum_probs=92.1

Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE-EEe-CCCCCCceEEcCC-CCEEEEEecCCCccee
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI-VAQ-LPGFPDNIKRSPR-GGFWVGIHSRRKGISK  181 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~-~~~-l~g~Pdgia~d~d-G~l~va~~~~~~~~~~  181 (268)
                      +..++..|.|||++--++.+|.+|+...+|-+-.++|..   +++ |.+ |- .|++|++|+- |+||-++|.....-++
T Consensus      1063 ~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~tdLV-NPR~iv~D~~rgnLYwtDWnRenPkIe 1138 (1289)
T KOG1214|consen 1063 VNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYTDLV-NPRAIVVDPIRGNLYWTDWNRENPKIE 1138 (1289)
T ss_pred             ecccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEeeccc-CcceEEeecccCceeeccccccCCcce
Confidence            457789999999999999999999999999999998742   333 333 43 6999999995 5899999987653322


Q ss_pred             eeEeeCccceeeeeccccceeee--------eeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          182 LVLSFPWIGNVLIKLPIDIVKIH--------SSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       182 ~v~~~~~~g~~l~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      -.......++++..-.....+-.        -|+.....+  .+-.+.++|.-.++...    .+.-+-+++.+.+.+|.
T Consensus      1139 ts~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~--rleC~~p~g~gRR~i~~----~LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1139 TSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTK--RLECTLPDGTGRRVIQN----NLQYPFSITSYADHFYH 1212 (1289)
T ss_pred             eeccCCccceEEeecccCCCCCceeCcccceeeEEecCCc--ceeEecCCCCcchhhhh----cccCceeeeecccccee
Confidence            22222233333322111111100        011111111  12333333332222221    13445567777888999


Q ss_pred             eeCCCCeEEEEeC
Q 024436          254 GSVNMPYAGLYNY  266 (268)
Q Consensus       254 ~s~~~~~v~~~~~  266 (268)
                      ++|..|+|.-+++
T Consensus      1213 TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVNK 1225 (1289)
T ss_pred             eccccCceEEeec
Confidence            9999999987754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.87  E-value=0.0071  Score=56.05  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=51.1

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....|+.+|.++++.+.+...-..-..++|+|||+.|+++....+  .|+.++++++.   ...+....+.....++++|
T Consensus       226 ~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpD  302 (429)
T PRK01742        226 KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPD  302 (429)
T ss_pred             CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCC
Confidence            345799999887766555432222346899999998888654333  67888876532   2333222233457889999


Q ss_pred             CC-EEEE
Q 024436          166 GG-FWVG  171 (268)
Q Consensus       166 G~-l~va  171 (268)
                      |+ ++.+
T Consensus       303 G~~i~f~  309 (429)
T PRK01742        303 GQSILFT  309 (429)
T ss_pred             CCEEEEE
Confidence            97 4433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.80  E-value=0.012  Score=50.50  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=84.4

Q ss_pred             CCcceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           87 DKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      .+..+|.++|+++|++...  .+.--|..||++-.|  .||.--+.++...+||.+.  +.....| ..++-..||+-|.
T Consensus        65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg  139 (264)
T PF05096_consen   65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG  139 (264)
T ss_dssp             TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS
T ss_pred             CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC
Confidence            3456899999999876432  345568899999965  6999889999999999874  2223333 2456778999763


Q ss_pred             CCCEEEEEecCCCcceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEE
Q 024436          165 RGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISE  243 (268)
Q Consensus       165 dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~  243 (268)
                       ..||+++....      +... |.+-+..++                               +.+. + +|+++..+..
T Consensus       140 -~~Li~SDGS~~------L~~~dP~~f~~~~~-------------------------------i~V~-~-~g~pv~~LNE  179 (264)
T PF05096_consen  140 -KRLIMSDGSSR------LYFLDPETFKEVRT-------------------------------IQVT-D-NGRPVSNLNE  179 (264)
T ss_dssp             -SCEEEE-SSSE------EEEE-TTT-SEEEE-------------------------------EE-E-E-TTEE---EEE
T ss_pred             -CEEEEECCccc------eEEECCcccceEEE-------------------------------EEEE-E-CCEECCCcEe
Confidence             37888887553      2222 111111111                               1111 1 3455666666


Q ss_pred             EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          244 VEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       244 ~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      .-..+|+||---+..++|.+||-.|
T Consensus       180 LE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  180 LEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             EEEETTEEEEEETTSSEEEEEETTT
T ss_pred             EEEEcCEEEEEeCCCCeEEEEeCCC
Confidence            6678999999999999999999764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.80  E-value=9.3e-05  Score=44.95  Aligned_cols=37  Identities=22%  Similarity=0.095  Sum_probs=33.9

Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +..++..||||+++++++.||.+|...+.|.+++++|
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            4457889999999999999999999999999999986

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.79  E-value=0.0055  Score=51.74  Aligned_cols=150  Identities=11%  Similarity=0.083  Sum_probs=90.4

Q ss_pred             hcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEEcC---------CCCCeeEEEeecC
Q 024436           20 SSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTS---------PNRNHISVILSGD   87 (268)
Q Consensus        20 ~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~~~~~~~~~---------~~~~~~~~~~~~~   87 (268)
                      ++-++.++|+.+. .+-+-+.+.||++.+.++. .-.|..+|.+..   ....|....         .++.|++   ++.
T Consensus        28 ~tG~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy---Tgs  102 (311)
T KOG0315|consen   28 LTGICSRTIQHPD-SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY---TGS  102 (311)
T ss_pred             hcCeEEEEEecCc-cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE---ecC
Confidence            3456899999985 4788999999999776643 233333343221   122222111         1223443   556


Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      .+|.+-.+|...-...+..+...--|.+.+.|....|++.+ .++.|++||+..... ..+...+..-.-.-+++++||.
T Consensus       103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgs  180 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGS  180 (311)
T ss_pred             CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCc
Confidence            67777777776544455555545569999999998898877 568899999864211 1111111111234678888888


Q ss_pred             EEEEEecCC
Q 024436          168 FWVGIHSRR  176 (268)
Q Consensus       168 l~va~~~~~  176 (268)
                      ..+|....+
T Consensus       181 ml~a~nnkG  189 (311)
T KOG0315|consen  181 MLAAANNKG  189 (311)
T ss_pred             EEEEecCCc
Confidence            777666554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.78  E-value=0.012  Score=50.39  Aligned_cols=136  Identities=14%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ..-++++..+||++.++..-|+.+..||..+ +....|...          ..++    .+.++..+..+..++.-+...
T Consensus        64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----qivSGSrDkTiklwnt~g~ck  139 (315)
T KOG0279|consen   64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----QIVSGSRDKTIKLWNTLGVCK  139 (315)
T ss_pred             eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc----eeecCCCcceeeeeeecccEE
Confidence            3567889999999889888899999998754 332333221          1121    123444555666666653333


Q ss_pred             EEeecC--CCCcceEEEccCC-CEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          103 TVLLGN--LSFPNGVALSEDG-NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       103 ~~~~~~--~~~pnGia~spdg-~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      -...++  -..-+.+.|+|.. .-++++.+....|.+|++++-++  ...+..-.++-.-+++.|||.+.......
T Consensus       140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkd  213 (315)
T KOG0279|consen  140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKD  213 (315)
T ss_pred             EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCC
Confidence            333333  4567899999996 45667777888999999986332  22222223577889999999998774333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.78  E-value=0.0023  Score=56.03  Aligned_cols=89  Identities=17%  Similarity=0.014  Sum_probs=58.4

Q ss_pred             ecCCcceEEEEeCCCCeEEEeec--CCCCcc-eEEEccCCCEEEEEec----CCcEEEEEEccCCCCCceeEEEeCCCCC
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLG--NLSFPN-GVALSEDGNYILLAET----TSCRILRYWLKTSKAGTIEIVAQLPGFP  157 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~--~~~~pn-Gia~spdg~~lyva~~----~~~~I~~~~~~~~~~g~~~~~~~l~g~P  157 (268)
                      ...+.--.+++|+.+++......  ....-| .-+||+||++||.+|.    ..+.|-+||...+ ......|..-.-.|
T Consensus        23 aRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGP  101 (305)
T PF07433_consen   23 ARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGP  101 (305)
T ss_pred             EeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCCCcCh
Confidence            43454567889998887654432  111222 3789999999999965    5579999998731 22222332221259


Q ss_pred             CceEEcCCC-CEEEEEec
Q 024436          158 DNIKRSPRG-GFWVGIHS  174 (268)
Q Consensus       158 dgia~d~dG-~l~va~~~  174 (268)
                      .-|.+.+|| .|.||..+
T Consensus       102 Hel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen  102 HELLLMPDGETLVVANGG  119 (305)
T ss_pred             hhEEEcCCCCEEEEEcCC
Confidence            999999999 67777755

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.003  Score=54.63  Aligned_cols=151  Identities=13%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEE------cCC--CC----------CeeEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFAR------TSP--NR----------NHISVI   83 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~------~~~--~~----------~~~~~~   83 (268)
                      =++++|+.++..||+|..-.+|.+.+++-.+.+++.+.  +++.. .....      ..+  +.          ....-+
T Consensus       119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~-~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~  197 (316)
T COG3204         119 LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV-ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV  197 (316)
T ss_pred             eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE-EeccceEEeccccCCCCcCceeeecCCCCceEEE
Confidence            57899999999999999999999777777788887764  45432 11110      011  11          011111


Q ss_pred             eecCCcceEEEEeCCCCeEEEeec-----C----CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE---
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLG-----N----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA---  151 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~-----~----~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~---  151 (268)
                      .....--.||.++........-..     .    +.--.|+.+++...+|+|=.-.++++..++.+|...+......   
T Consensus       198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~  277 (316)
T COG3204         198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH  277 (316)
T ss_pred             EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC
Confidence            222334566666543211111100     0    1123488999877778886667789999998874321111111   


Q ss_pred             ----eCCCCCCceEEcCCCCEEEEEecCC
Q 024436          152 ----QLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       152 ----~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                          ++| .|.||++|.+|+||+....+.
T Consensus       278 gL~~dip-qaEGiamDd~g~lYIvSEPnl  305 (316)
T COG3204         278 GLSSDIP-QAEGIAMDDDGNLYIVSEPNL  305 (316)
T ss_pred             CCcccCC-CcceeEECCCCCEEEEecCCc
Confidence                123 589999999999999887764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.73  E-value=0.039  Score=51.22  Aligned_cols=130  Identities=14%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             eEEECCCCC---EEEEEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEE--EeCCC--
Q 024436           38 SLAFDALGE---GPYTGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMK--YDPAT--   99 (268)
Q Consensus        38 gia~~~dG~---~l~~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~--~d~~~--   99 (268)
                      ..+++|||+   ++|++..+  .+|+..+.++.....+.         ..+|++.++.-.....+...+|.  ++.++  
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            348999997   34566543  56888887654222221         12345544432222122224444  45432  


Q ss_pred             -CeEEEeecC-CCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436          100 -KQVTVLLGN-LSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  168 (268)
Q Consensus       100 -~~~~~~~~~-~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l  168 (268)
                       ++.+.+... .......+|+|||+.|+++..  ...+|+++++++.. +..+.+....+.....++.|||+.
T Consensus       269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccceeECCCCCE
Confidence             344445433 233456799999997766543  23478888875321 122222222223456789999973

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.022  Score=49.43  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=94.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC--------CCCeeEEEeecCCcceEEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--------NRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~g~v~~~   95 (268)
                      +++.++ |.-+.-.+|.+.|-++.+.++..|..|..||..-+.-.+.....+        .+-++ +  ...+...|..+
T Consensus        92 ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLif-A--~~~~~~~IkLy  167 (311)
T KOG1446|consen   92 YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIF-A--LANGSELIKLY  167 (311)
T ss_pred             eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEE-E--EecCCCeEEEE
Confidence            444443 334678999999999999999999999999876332122221111        11111 1  11233355555


Q ss_pred             eCCC---CeEEEe---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc-cCCCCCceeEEEeCC---CCCCceEEcCC
Q 024436           96 DPAT---KQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL-KTSKAGTIEIVAQLP---GFPDNIKRSPR  165 (268)
Q Consensus        96 d~~~---~~~~~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~-~~~~~g~~~~~~~l~---g~Pdgia~d~d  165 (268)
                      |...   |-.+..   .......++|.|||||+.|.++. ..+.++.+|. +|..   ...|...+   ..|-.-++.||
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCC
Confidence            5432   111111   13456678999999999999886 4566777764 3321   22232221   35667788899


Q ss_pred             CCEEEEEecCCCcceeeeEee-Cccceeeeeccc
Q 024436          166 GGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPI  198 (268)
Q Consensus       166 G~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~  198 (268)
                      |+..++....+ +    |..+ -.+|+...+...
T Consensus       244 s~Fvl~gs~dg-~----i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  244 SKFVLSGSDDG-T----IHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CcEEEEecCCC-c----EEEEEcCCCcEeeEecC
Confidence            99888777765 3    4433 245665555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.70  E-value=0.0006  Score=65.84  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=91.8

Q ss_pred             CCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEE--EE-cCCCC--------C-eeEEEeecCCcceEEEEeCC
Q 024436           32 GAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHF--AR-TSPNR--------N-HISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        32 ~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~--~~-~~~~~--------~-~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ++..|||||+|.- .++||++...++|-.-..||+.-..+  .. +.|..        + |..++.  ..+-.|-+.+.+
T Consensus      1066 ~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWn--RenPkIets~mD 1143 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWN--RENPKIETSSMD 1143 (1289)
T ss_pred             cCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccc--ccCCcceeeccC
Confidence            5778999999986 45677888777776556677532221  11 11211        1 222322  122345444444


Q ss_pred             CCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436           99 TKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus        99 ~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      +..-+ .+.+.+..|||+.|+|-.+.|-..|.+++|+.-..+++.  +.+.++-.| .+|-+|.-+.+ ++|-++|..+.
T Consensus      1144 G~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~L-qYPF~itsy~~-~fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1144 GENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNL-QYPFSITSYAD-HFYHTDWKRNG 1219 (1289)
T ss_pred             CccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhcc-cCceeeeeccc-cceeeccccCc
Confidence            22222 345788999999999999999999999999998888762  334444445 48999988876 59999998764

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.68  E-value=0.00061  Score=59.54  Aligned_cols=73  Identities=26%  Similarity=0.398  Sum_probs=58.5

Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEe
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIH  173 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~  173 (268)
                      +|-.++  +++.+++.+|.+..|. || .||++|+.++++.+++.+.   |..++++.+||+|.|+++.  |++ +|+..
T Consensus       190 idv~s~--evl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       190 IDIPSG--EVVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             EEeCCC--CEEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCCC---CcEEEEEECCCCCccccee--CCEEEEEec
Confidence            444434  5678999999999998 56 4999999999999999874   4577888899999999998  764 56665


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ..+
T Consensus       261 k~R  263 (335)
T TIGR03032       261 KLR  263 (335)
T ss_pred             ccc
Confidence            544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.028  Score=51.99  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG  166 (268)
                      ...||.+|..+++.+.+...-.......|+|||+.|+++...  +..|+.++++++.   .+.+...++.-....+.|||
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SPDG  288 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVEDD  288 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECCCC
Confidence            458999999989888876532222346799999988776543  3589999987642   33333333222245789999


Q ss_pred             C-EEEEE
Q 024436          167 G-FWVGI  172 (268)
Q Consensus       167 ~-l~va~  172 (268)
                      + ++...
T Consensus       289 ~~I~F~S  295 (419)
T PRK04043        289 KRIVFVS  295 (419)
T ss_pred             CEEEEEE
Confidence            6 55544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.60  E-value=0.034  Score=53.63  Aligned_cols=136  Identities=13%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      .-...++.+.-++++++...|........+-........          ...+.|+.  +...+.|.+.+|+..+ +.-+
T Consensus       267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA--~g~~klgQLlVweWqs-EsYV  343 (893)
T KOG0291|consen  267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIA--FGCSKLGQLLVWEWQS-ESYV  343 (893)
T ss_pred             ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEE--EcCCccceEEEEEeec-ccee
Confidence            345667788888888888777775555332211111111          11123432  2345678888888873 3333


Q ss_pred             eec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 LLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 ~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +..  +...-+.++.+|||+ +.+|....++|.+|+...+..  ..+|.+-.....++.+...|+..++..-.+
T Consensus       344 lKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDG  414 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDG  414 (893)
T ss_pred             eeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence            333  355568999999997 778999999999999864321  334444334577999999999777665444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.59  E-value=0.0024  Score=54.82  Aligned_cols=114  Identities=13%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC-CCC--CeeEE--------EeecCCcce
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-PNR--NHISV--------ILSGDKTGR   91 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~-~~~--~~~~~--------~~~~~~~g~   91 (268)
                      +.+.+++.++  ...|++  .||+.++.+.+..+++.++|..-......... .++  .++.+        +..--.+.+
T Consensus       121 ~~~~~~~y~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~  196 (264)
T PF05096_consen  121 KKIGTFPYPG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR  196 (264)
T ss_dssp             EEEEEEE-SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred             eEEEEEecCC--cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence            4677777775  566777  56777888889999999998742222221111 111  11111        111124678


Q ss_pred             EEEEeCCCCeEEEeec----------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           92 LMKYDPATKQVTVLLG----------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~----------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      |.+|||++|++....+                ....-||||++|+++.+|||.-.=.+++.+.+.
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            9999999999876431                124579999999999999998877888887653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.077  Score=49.65  Aligned_cols=136  Identities=20%  Similarity=0.296  Sum_probs=83.1

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeC-CCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDP-ATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~  100 (268)
                      ..-..+.|+++|+.+.+...++.+..+...+..   .....         ..+++..++   .+...+..+..+|. +.+
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l---~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYL---LSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEE---EEecCCceEEEeeccCCC
Confidence            445568899999987777677777666653221   11110         012222222   23333444555554 333


Q ss_pred             -eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          101 -QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       101 -~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                       .++++..+..+.+.++|+|+| .++++-+..+.|..|++.+++.  .+.+..-.+.-.++++.++|+++++....
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence             456666777788999999999 5888999999999999975321  22222222335678899999976665433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.53  E-value=0.0066  Score=54.60  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=75.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-----------WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ-V  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~  102 (268)
                      .-.-++|.|+|+++.++.-|..=..||...+.           +...+- .+++. +......+..++||-+-  +|+ +
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf-~~DGS-L~~tGGlD~~~RvWDlR--tgr~i  338 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF-QPDGS-LAATGGLDSLGRVWDLR--TGRCI  338 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe-cCCCc-eeeccCccchhheeecc--cCcEE
Confidence            45567888888888877665444344443221           000000 01111 11111223556766554  454 4


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcC-CCCEEEEEecC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP-RGGFWVGIHSR  175 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~-dG~l~va~~~~  175 (268)
                      -.+.++...-.+++|+|+| +...|.+..+.+.+||+...     ..+..+|   .....++++| .|.+++++...
T Consensus       339 m~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  339 MFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             EEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecccCCeEEEEcccC
Confidence            4455666667899999999 57788888999999998742     2233344   2466888997 45555555433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.042  Score=47.55  Aligned_cols=168  Identities=19%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             CcceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCCEEEEEecC--Cc-EEEE--EEccCCCCCceeEEEe-------
Q 024436           88 KTGRLMKYDPATKQVTVL---LGNLSFPNGVALSEDGNYILLAETT--SC-RILR--YWLKTSKAGTIEIVAQ-------  152 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~---~~~~~~pnGia~spdg~~lyva~~~--~~-~I~~--~~~~~~~~g~~~~~~~-------  152 (268)
                      ..|-|-.||.. .....+   ......|..+.+.+||++|.+++..  ++ ..-|  ..++.  +...-++.+       
T Consensus       138 ~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds--MePSlvlld~atG~li  214 (366)
T COG3490         138 NRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS--MEPSLVLLDAATGNLI  214 (366)
T ss_pred             CCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh--cCccEEEEeccccchh
Confidence            45666677766 333333   3344568999999999999888751  11 0111  11111  000001111       


Q ss_pred             ----CC-----CCCCceEEcCCCCEEEEEecCC--CcceeeeEeeCccceeeeeccccce------eeeeeccccCCCcE
Q 024436          153 ----LP-----GFPDNIKRSPRGGFWVGIHSRR--KGISKLVLSFPWIGNVLIKLPIDIV------KIHSSLVKLSGNGG  215 (268)
Q Consensus       153 ----l~-----g~Pdgia~d~dG~l~va~~~~~--~~~~~~v~~~~~~g~~l~~i~~~~~------~~~~~~~~~~~~~~  215 (268)
                          +|     ---+-+++++||++|.++.-.+  ...-.+|..+.+ |+-+..++.|.+      ++...+...... +
T Consensus       215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~~~~~anYigsiA~n~~~-g  292 (366)
T COG3490         215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQTAAFANYIGSIAANRRD-G  292 (366)
T ss_pred             hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHHHHHHHhhhhheeecccC-C
Confidence                22     0136789999999999886432  222222444444 444444554422      111111122233 6


Q ss_pred             EEEEECCCCCEEEEEEcCCCCceec-----eEEEEEeCCEEEEeeCCCCe
Q 024436          216 MAMRISEQGNVLEILEEIGRKMWRS-----ISEVEEKDGNLWIGSVNMPY  260 (268)
Q Consensus       216 ~~~~~~~~G~~~~~~~~~~g~~~~~-----~s~~~~~~g~Lyv~s~~~~~  260 (268)
                      ++..-+|.|+...+++-..|.++..     .++++...+-.-++|-.+..
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~  342 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRI  342 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceE
Confidence            7777888888888888777765433     33344444444444444433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.49  E-value=0.015  Score=47.96  Aligned_cols=101  Identities=17%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC
Q 024436           90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG  166 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG  166 (268)
                      ..+..+|.+...+..+.  -...|.|.|+|+|++|.++...  .+.|..||.+.     ...+... ......++++|||
T Consensus        83 ~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdG  155 (194)
T PF08662_consen   83 AKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDG  155 (194)
T ss_pred             cccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCC
Confidence            36667776633333332  2456899999999988887643  46799999873     2333322 1246789999999


Q ss_pred             CEEEEEecC-CCcceeeeEeeCccceeeeecc
Q 024436          167 GFWVGIHSR-RKGISKLVLSFPWIGNVLIKLP  197 (268)
Q Consensus       167 ~l~va~~~~-~~~~~~~v~~~~~~g~~l~~i~  197 (268)
                      +.+++.... +.++..-+..+...|+++.+.+
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~  187 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSFQGRLLYKKP  187 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence            977655432 2222222444555566655544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.49  E-value=0.0029  Score=58.74  Aligned_cols=71  Identities=21%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc---e-eEEEe-CCCCCCceEEcCCC-------CE
Q 024436          101 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT---I-EIVAQ-LPGFPDNIKRSPRG-------GF  168 (268)
Q Consensus       101 ~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~---~-~~~~~-l~g~Pdgia~d~dG-------~l  168 (268)
                      +++++++++..|-+|+|.||| .|||++...++|++++.++.....   . .++.. ..+.+-||+++|+=       .+
T Consensus        21 ~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        21 DKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            567788999999999999999 599999878999999865422100   0 11111 12457899998762       58


Q ss_pred             EEEE
Q 024436          169 WVGI  172 (268)
Q Consensus       169 ~va~  172 (268)
                      |++.
T Consensus       100 Yvsy  103 (454)
T TIGR03606       100 YISY  103 (454)
T ss_pred             EEEE
Confidence            8876

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.48  E-value=0.007  Score=49.93  Aligned_cols=117  Identities=16%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEE-------EcCCCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFA-------RTSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~--~~g~I~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      .+..+.+..-..-..++.+|+|+.+++-.  ...+|..++.+++.+..+.       .-+|.++++.....+...|.|..
T Consensus        50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~  129 (194)
T PF08662_consen   50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEF  129 (194)
T ss_pred             ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence            45556655433478999999999775543  3467777787765444332       12455566544333445688889


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC-----CcEEEEEEccC
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT  141 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~-----~~~I~~~~~~~  141 (268)
                      +|.++.+.....+. .....++|||||+++..+.+.     .+.+..|+..|
T Consensus       130 wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  130 WDVRKKKKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            99875444332332 346899999999988777653     34556666665

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.48  E-value=0.00017  Score=40.05  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=24.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKW   60 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~   60 (268)
                      +..|.|++++++|++++++.++++|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3579999999999999999999999764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.0079  Score=54.69  Aligned_cols=106  Identities=12%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCC
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPR  165 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~d  165 (268)
                      ...|.|+.+...|+++-.-...-....+++|+.|++.||++. ..+.||+|++....  ....|.+-.+ .-.-+|...+
T Consensus       322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLN  398 (514)
T ss_pred             ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc--eEEEEeecCccceeeeeecCC
Confidence            456777777776655432222223456899999999888775 45799999997432  2344544221 2345777788


Q ss_pred             CCEEEEEecCCCcceeeeEeeCccceeeeeccccc
Q 024436          166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI  200 (268)
Q Consensus       166 G~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~  200 (268)
                      |. |+|......-    |..|...-.+...-|.|.
T Consensus       399 g~-ylA~GS~~Gi----VNIYd~~s~~~s~~PkPi  428 (514)
T KOG2055|consen  399 GS-YLATGSDSGI----VNIYDGNSCFASTNPKPI  428 (514)
T ss_pred             Cc-eEEeccCcce----EEEeccchhhccCCCCch
Confidence            88 4555444321    555664444444445443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.44  E-value=0.057  Score=50.12  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=48.4

Q ss_pred             cceEEEEeCC--CCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           89 TGRLMKYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        89 ~g~v~~~d~~--~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ...||.++.+  +++.+.+..........+|+|||+.|+++...  ..+|++++++++.   .+.+...++......+.+
T Consensus       304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~~~~~~~p~wSp  380 (428)
T PRK01029        304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTSPENKESPSWAI  380 (428)
T ss_pred             CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCCCCCccceEECC
Confidence            3478888653  23445454333344568999999988876543  3579999998643   333322223456788999


Q ss_pred             CCCE
Q 024436          165 RGGF  168 (268)
Q Consensus       165 dG~l  168 (268)
                      ||+.
T Consensus       381 DG~~  384 (428)
T PRK01029        381 DSLH  384 (428)
T ss_pred             CCCE
Confidence            9873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.41  E-value=0.038  Score=50.78  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEE
Q 024436           91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFW  169 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~  169 (268)
                      .+-.+|.+++++++...++..-..+.++|||+.+.+++ .+..||+++++++.   .+.... -.++-.++++.++++.+
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn---v~~idkS~~~lItdf~~~~nsr~i  458 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNSRWI  458 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC---eeEecccccceeEEEEEcCCceeE
Confidence            78889999999999999998889999999999887776 66899999998643   333322 23566788888887644


Q ss_pred             EEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          170 VGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       170 va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      .=.+..+ -..+-|..|...+.-+-.+.+|
T Consensus       459 AYafP~g-y~tq~Iklydm~~~Kiy~vTT~  487 (668)
T COG4946         459 AYAFPEG-YYTQSIKLYDMDGGKIYDVTTP  487 (668)
T ss_pred             EEecCcc-eeeeeEEEEecCCCeEEEecCC
Confidence            4333332 3444466666555433344433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.40  E-value=0.018  Score=55.35  Aligned_cols=143  Identities=17%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             ecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        29 ~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ..+.-..-.|..|+||.+++++..+|..|..|+.+... ...+.         ..+|.+ |.......+++.++|..|-.
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccC
Confidence            44444467899999999999999999999888877542 11111         112222 33334466777889988874


Q ss_pred             CCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436           99 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus        99 ~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                       .-.+.++..+.--..+.|.|+..++ .+.+..+.+..||...+.  .++.|..-.+--..+++.|+|+..++....+
T Consensus       526 -~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  526 -KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             -CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence             5667778888888889999998644 467788899999987532  3566643223356789999988766665554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.40  E-value=0.07  Score=45.86  Aligned_cols=139  Identities=18%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEE-----------EeecCCcceEEEEeCC
Q 024436           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISV-----------ILSGDKTGRLMKYDPA   98 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~g~v~~~d~~   98 (268)
                      ++..+.--+++|++|.+.++++..|..|..|+.-|.........+. ++|+.-           +.....+..|-.+|.+
T Consensus       102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~  180 (315)
T KOG0279|consen  102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLR  180 (315)
T ss_pred             EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence            3344577899999999999999999998888765543222211111 222211           1222344556666666


Q ss_pred             CCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCEEEEEecC
Q 024436           99 TKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus        99 ~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l~va~~~~  175 (268)
                      +-+++. ....-.+-|-+++||||. |-.+....+.++-|+++.++     ....++  ..-..+++.|+ ++|++....
T Consensus       181 ~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k-----~lysl~a~~~v~sl~fspn-rywL~~at~  253 (315)
T KOG0279|consen  181 NCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK-----NLYSLEAFDIVNSLCFSPN-RYWLCAATA  253 (315)
T ss_pred             CcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc-----eeEeccCCCeEeeEEecCC-ceeEeeccC
Confidence            444432 345566788999999996 77777778899999998432     122222  13567889885 677766555


Q ss_pred             C
Q 024436          176 R  176 (268)
Q Consensus       176 ~  176 (268)
                      .
T Consensus       254 ~  254 (315)
T KOG0279|consen  254 T  254 (315)
T ss_pred             C
Confidence            4

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.35  E-value=0.019  Score=53.78  Aligned_cols=142  Identities=22%  Similarity=0.324  Sum_probs=91.2

Q ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCC
Q 024436           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQ-RRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      .+....-.+++++|||+.++++..|.+|..|+. +. .....+...         .+.+   ..+..+..++.|..+|..
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEecc
Confidence            344567889999999998888889999988887 33 322333211         1111   123455667788888888


Q ss_pred             CCeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC---CceEEcCCCCEEEEEec
Q 024436           99 TKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP---DNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P---dgia~d~dG~l~va~~~  174 (268)
                      +++.... ..+-..-++++|++||+.|..+ +..+.|..||+.++...-...+.... .|   .-++++++|.+.+....
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAE-NSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCC-CCCceeEEEECCCCcEEEEecC
Confidence            7766544 4444566899999999866544 77899999999864311011111111 23   67888999986665555


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       355 d~  356 (456)
T KOG0266|consen  355 DR  356 (456)
T ss_pred             CC
Confidence            53

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.34  E-value=0.0054  Score=58.80  Aligned_cols=142  Identities=17%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCC
Q 024436           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      -+++-.-..+.|.|-|-.++++.+|+.-..|+.+-. ....|+.         ..|+.+|+.   ++..+..+..||-.+
T Consensus       490 ~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~a---TGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  490 KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVA---TGSSDRTVRLWDVST  566 (707)
T ss_pred             cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccc---cCCCCceEEEEEcCC
Confidence            355545567899999986666655544434444432 1122221         135666664   223333444455555


Q ss_pred             CeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436          100 KQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       100 ~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      |...++..+-..| .-++|||+|++| ++....+.|..||+.++.+  ...+..-.+.-.-+.+..||+++++....++
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence            5555555444444 689999999866 5666789999999975321  1111111345678899999999988877764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.34  E-value=0.12  Score=47.35  Aligned_cols=136  Identities=19%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      +.-.+++...+|++++++..+|.+..|+.+|.....+...         .+.+.|+   +++...+++..+|.-+|++.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yi---lS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYI---LSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEE---EeccCCccEEEEeccCceEEE
Confidence            5788999999999999999999999999998754443321         1222333   345667888899988888776


Q ss_pred             eecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 LLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 ~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..+--..| -.+.|-.+.  =|++....++|+++.++....  ...|..-.|-...|.+++.|.|+.++....
T Consensus       313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~LLaS~SdD~  381 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSLLASCSDDG  381 (524)
T ss_pred             eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc--ceeeecccCceEEEEECCCCceEEEecCCC
Confidence            65444445 456665443  456777888999999875321  233332224466888888888888776554

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.018  Score=52.46  Aligned_cols=127  Identities=17%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP  112 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  112 (268)
                      +..|.+++..|+|.++++....|++..+...+......   ...    ..... ...+.+.-++.    ...++++...|
T Consensus        66 Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~---~~~----~~~~~-~~~~Gll~~al----~~~fa~~~~~~  133 (399)
T COG2133          66 LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPV---STV----PIVLL-RGQGGLLDIAL----SPDFAQGRLVY  133 (399)
T ss_pred             ccCchhheecCCceEEEEccCCccEEEecCCCcccccc---ccc----ceEEe-ccCCCccceEe----cccccccceee
Confidence            67899999999997666655568776555433210000   000    00111 11122222211    12356778889


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEeCCCC----CCceEEcCCCCEEEEEecC
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGF----PDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~l~g~----Pdgia~d~dG~l~va~~~~  175 (268)
                      .++++..+  .+|++++  ..+.+|+....++.. ...+.++|+.    -.-|+++|||+|||+....
T Consensus       134 ~~~a~~~~--~~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~  197 (399)
T COG2133         134 FGISEPGG--GLYVANR--VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSN  197 (399)
T ss_pred             eEEEeecC--CceEEEE--EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence            99999865  3888864  456677722233433 3445557643    2469999999999988776

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.30  E-value=0.01  Score=54.91  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCc
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKT   89 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~   89 (268)
                      .+.+..++++-  .|.++|+.|+++.+.++-.|++|..+...|......+.            -+|+..|+.   ..+..
T Consensus       434 ~~~~~~~~~~y--~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla---~~Da~  508 (603)
T KOG0318|consen  434 QTKVSSIPIGY--ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA---AGDAS  508 (603)
T ss_pred             CCcceeecccc--ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE---EeccC
Confidence            34455556553  68899999999988888888888877766532222221            134444443   34566


Q ss_pred             ceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC
Q 024436           90 GRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG  166 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG  166 (268)
                      +.+..||..+++...-.  -+-..-|+++|+|+.+ ++.+.+..-.|.+|.++.+.  +....... ++...++++-.+-
T Consensus       509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~--~~i~iknAH~~gVn~v~wlde~  585 (603)
T KOG0318|consen  509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA--KHIIIKNAHLGGVNSVAWLDES  585 (603)
T ss_pred             CcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh--hheEeccccccCceeEEEecCc
Confidence            78888888876663322  2334568999999986 66788888899999998532  12111111 2236667765444


Q ss_pred             CEEEEE
Q 024436          167 GFWVGI  172 (268)
Q Consensus       167 ~l~va~  172 (268)
                      .+.-+.
T Consensus       586 tvvSsG  591 (603)
T KOG0318|consen  586 TVVSSG  591 (603)
T ss_pred             eEEecc
Confidence            444333

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.26  E-value=0.13  Score=46.75  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=77.1

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC------------CCCCeeEEEeecCC----cceEEEEeCCCCeEEEee
Q 024436           43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS------------PNRNHISVILSGDK----TGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        43 ~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~----~g~v~~~d~~~~~~~~~~  106 (268)
                      |...+++.....+-++.++.+|+.+..+....            .++..-....+.+.    .-++|++|++++.++.+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            44566666667788888999998543332100            00011011222222    236999999888776653


Q ss_pred             -------cCCCCcceEEEc--c-CCCEEEEEecCCcEEEEEEccCCCCCc--eeEEEe--CCCCCCceEEcCC-CCEEEE
Q 024436          107 -------GNLSFPNGVALS--E-DGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQ--LPGFPDNIKRSPR-GGFWVG  171 (268)
Q Consensus       107 -------~~~~~pnGia~s--p-dg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~~--l~g~Pdgia~d~d-G~l~va  171 (268)
                             ..+.-|.|+++-  | +|+.-.+.....+++..|.+.....+.  .+.+.+  +++.|.|+++|.+ |.||++
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg  225 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG  225 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence                   334557899985  3 455222334456888888885221121  223333  5668999999975 679999


Q ss_pred             EecCCCcceeeeEeeC
Q 024436          172 IHSRRKGISKLVLSFP  187 (268)
Q Consensus       172 ~~~~~~~~~~~v~~~~  187 (268)
                      +...+      |++|.
T Consensus       226 EE~~G------IW~y~  235 (381)
T PF02333_consen  226 EEDVG------IWRYD  235 (381)
T ss_dssp             ETTTE------EEEEE
T ss_pred             cCccE------EEEEe
Confidence            98875      66654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.26  E-value=0.019  Score=51.71  Aligned_cols=134  Identities=16%  Similarity=0.054  Sum_probs=85.9

Q ss_pred             CCcceEEECCCCCEEEEEeCC--CeEEEEeCCCCe--EEE---------EEEcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSD--GRIIKWHQDQRR--WLH---------FARTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~--g~I~~~~~~g~~--~~~---------~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      .--.-+.|+++|+.+.++..|  .-|+.+..+++.  ...         +..-+|+..|+.   +......+..+|.++|
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl---aCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL---ACGFDEVLSLWDVDTG  301 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE---ecCchHheeeccCCcc
Confidence            345678899999988887765  445555667651  011         112256655553   3344556888888888


Q ss_pred             eEEEeecCC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436          101 QVTVLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       101 ~~~~~~~~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~  173 (268)
                      .........  ..+..-+|.|||.. +|+.+..+.|..|+.+|...+..+-+. .| ....+++.+||...+...
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~-~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR-DP-KVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc-cc-eeEEEEEcCCCcEEEEEe
Confidence            776554332  34567899999976 578888899999999985433332211 12 246789999997444443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.25  E-value=0.023  Score=56.40  Aligned_cols=168  Identities=15%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP  112 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  112 (268)
                      ..-.++.+++||..++++.+|.-|..|...+.. -..+...             .....+-.+    ..+..+..+-.--
T Consensus        70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~-------------g~~~~vE~w----k~~~~l~~H~~DV  132 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGST-------------GGAKNVESW----KVVSILRGHDSDV  132 (942)
T ss_pred             CceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccc-------------cccccccee----eEEEEEecCCCcc
Confidence            356777899999988888877777666654210 0011000             000011111    0112222222233


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccce
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGN  191 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~  191 (268)
                      ..++|+||+. ++++-+..++|..|+...  ....+++..-.+.+-|+.+||-|+++.+....+.     |..+. .+-.
T Consensus       133 ~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-----ikvwrt~dw~  204 (942)
T KOG0973|consen  133 LDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-----LKVWRTSDWG  204 (942)
T ss_pred             ceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeeecCCce-----EEEEEcccce
Confidence            4799999986 778999999999998653  2223333333467999999999999888887764     33332 2233


Q ss_pred             eeeeccccceeeeeeccccCCCcEEEEEECC--CCCEEEEEEcCC
Q 024436          192 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISE--QGNVLEILEEIG  234 (268)
Q Consensus       192 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~~~~  234 (268)
                      +..+|.-|.+.        .+.+....++++  ||+.+.+-+.-+
T Consensus       205 i~k~It~pf~~--------~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  205 IEKSITKPFEE--------SPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeEeeccchhh--------CCCcceeeecccCCCcCeecchhhcc
Confidence            44555444321        111123444443  677776655433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.23  E-value=0.095  Score=43.78  Aligned_cols=163  Identities=19%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-e---CCC--CCCc
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q---LPG--FPDN  159 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~---l~g--~Pdg  159 (268)
                      ...+.|+.+|+.+|++.--.+. ..+ .......++ .+||.. ..++|+.++...++.    .+. .   .+.  .-..
T Consensus        43 ~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-~v~v~~-~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~  115 (238)
T PF13360_consen   43 SGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-RVYVGT-SDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSS  115 (238)
T ss_dssp             ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-EEEEEE-TTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--
T ss_pred             cCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-cccccc-ceeeeEecccCCcce----eeeeccccccccccccc
Confidence            4678999999988876432221 111 111233344 688876 345999999664321    222 1   111  1112


Q ss_pred             eEEcCCC-CEEEEEecCCCcceeeeEe-eCccceeeeecccccee----e-------eeeccccCCCcEEEEEECCCCCE
Q 024436          160 IKRSPRG-GFWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVK----I-------HSSLVKLSGNGGMAMRISEQGNV  226 (268)
Q Consensus       160 ia~d~dG-~l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~G~~  226 (268)
                      +....+| .++++...+.      |.. ...+|+++...+.....    .       ..++   ... +.++..+.+|++
T Consensus       116 ~~~~~~~~~~~~~~~~g~------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~~~~~g~~  185 (238)
T PF13360_consen  116 SSPAVDGDRLYVGTSSGK------LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV---ISD-GRVYVSSGDGRV  185 (238)
T ss_dssp             SEEEEETTEEEEEETCSE------EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE---CCT-TEEEEECCTSSE
T ss_pred             cCceEecCEEEEEeccCc------EEEEecCCCcEEEEeecCCCCCCcceeeecccccceE---EEC-CEEEEEcCCCeE
Confidence            2222234 4666665443      333 45789987777654311    0       1111   112 356777777775


Q ss_pred             EEEEEcCCCCcee-----ceEE-EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          227 LEILEEIGRKMWR-----SISE-VEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       227 ~~~~~~~~g~~~~-----~~s~-~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +.. +-..|+.++     .... ....++.||+++ .+.+|..+|+++
T Consensus       186 ~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~t  231 (238)
T PF13360_consen  186 VAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTS-SDGRLYALDLKT  231 (238)
T ss_dssp             EEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred             EEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEe-CCCEEEEEECCC
Confidence            555 555665322     1222 345789999999 899999999875

...

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.14  E-value=0.0078  Score=56.40  Aligned_cols=70  Identities=20%  Similarity=0.365  Sum_probs=51.9

Q ss_pred             cCCCCcceEEEccCCCEEEEEecCCc----------------EEEEEEccCC----CCCceeEEEeC--C---C------
Q 024436          107 GNLSFPNGVALSEDGNYILLAETTSC----------------RILRYWLKTS----KAGTIEIVAQL--P---G------  155 (268)
Q Consensus       107 ~~~~~pnGia~spdg~~lyva~~~~~----------------~I~~~~~~~~----~~g~~~~~~~l--~---g------  155 (268)
                      ..+..|.+|++.|+...+|++.+.+.                +|++|-..+.    ...+.+.|...  +   .      
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~  493 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN  493 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence            34678999999999888999987654                6888877642    22345555541  1   1      


Q ss_pred             -------CCCceEEcCCCCEEEEEecCC
Q 024436          156 -------FPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       156 -------~Pdgia~d~dG~l~va~~~~~  176 (268)
                             .||||++|+.|+||++.-+..
T Consensus       494 ~~~~~f~~PDnl~fD~~GrLWi~TDg~~  521 (616)
T COG3211         494 INANWFNSPDNLAFDPWGRLWIQTDGSG  521 (616)
T ss_pred             cccccccCCCceEECCCCCEEEEecCCC
Confidence                   399999999999999987665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.11  E-value=0.13  Score=43.01  Aligned_cols=165  Identities=18%  Similarity=0.192  Sum_probs=88.1

Q ss_pred             cceEEEEeCCCCeEEEeecCC-CCcceE--EEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcC
Q 024436           89 TGRLMKYDPATKQVTVLLGNL-SFPNGV--ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSP  164 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi--a~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~  164 (268)
                      +|.|..+|+.+|+..--..-- .....+  ++. +++++|+++ ..+.|+.++.++++    ..+. ++++.......-.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVAS-GDGNLYALDAKTGK----VLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEE-TTSEEEEEETTTSE----EEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEc-CCCEEEEEECCCCC----EEEEeeccccccceeeec
Confidence            467888888767543211110 133344  333 455799984 77899999986432    2222 2333222222334


Q ss_pred             CCCEEEEEecCCCcceeeeEee-Cccceeeeec-ccc--ce-------e-ee--eeccccCCCcEEEEEECC-CCCEEEE
Q 024436          165 RGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKL-PID--IV-------K-IH--SSLVKLSGNGGMAMRISE-QGNVLEI  229 (268)
Q Consensus       165 dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i-~~~--~~-------~-~~--~~~~~~~~~~~~~~~~~~-~G~~~~~  229 (268)
                      ++.+|++...+  .    +..+ ..+|+++.+. ...  ..       . +.  .++.. ... +.++.+|+ +|+++..
T Consensus        76 ~~~v~v~~~~~--~----l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   76 GGRVYVGTSDG--S----LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG-TSS-GKLVALDPKTGKLLWK  147 (238)
T ss_dssp             TTEEEEEETTS--E----EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE-ETC-SEEEEEETTTTEEEEE
T ss_pred             cccccccccee--e----eEecccCCcceeeeeccccccccccccccCceEecCEEEEE-ecc-CcEEEEecCCCcEEEE
Confidence            56788877444  2    3334 4788887764 211  00       0 00  01111 112 56888886 5999888


Q ss_pred             EEcCCCCcee------c-eEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          230 LEEIGRKMWR------S-ISEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       230 ~~~~~g~~~~------~-~s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +.-...+...      . ....+..++++|+++..+..+++ ++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t  192 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT  192 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTT
T ss_pred             eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCC
Confidence            8763322111      1 12334456799999988875555 7653

...

>PTZ00421 coronin; Provisional

Probab=97.11  E-value=0.26  Score=46.62  Aligned_cols=133  Identities=13%  Similarity=0.171  Sum_probs=78.8

Q ss_pred             CcceEEECC-CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEe
Q 024436           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR--------RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        35 ~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~--------~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      .-.+++++| ++++++++..|+.|..|+....        .+..+..         ..+....  .+.....++.|..||
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--VLASAGADMVVNVWD  154 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC--EEEEEeCCCEEEEEE
Confidence            457899999 8888999999999998875321        1111110         1121111  122334567888888


Q ss_pred             CCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-CCCCceEEcCCCCEEEEE
Q 024436           97 PATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus        97 ~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g~Pdgia~d~dG~l~va~  172 (268)
                      ..+++...... ....-+.++|+|||+ ++++-+.++.|..||+..+..  ...+..-. .....+.+.++++.+++.
T Consensus       155 l~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        155 VERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             CCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            87766544333 344568999999997 556667889999999874321  11111111 122345666766655543

>PTZ00420 coronin; Provisional

Probab=97.07  E-value=0.31  Score=46.86  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=67.2

Q ss_pred             CCcceEEECCC-CCEEEEEeCCCeEEEEeCC-CCe-E-------EEEEE---------cCCCCCeeEEEeecCCcceEEE
Q 024436           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRR-W-------LHFAR---------TSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~-g~~-~-------~~~~~---------~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      ....+++++|+ +++++++..|+.|..|+.. +.. .       ..+..         ..|...++  +.+...++.|..
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i--LaSgS~DgtIrI  152 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI--MCSSGFDSFVNI  152 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE--EEEEeCCCeEEE
Confidence            46789999997 7889999999999988853 210 0       01110         01222222  123344677888


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ||..+++.............++|+|||+.| ++.+..+.|..||+..
T Consensus       153 WDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        153 WDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK  198 (568)
T ss_pred             EECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence            888766543333333446789999999854 5656678999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.07  E-value=0.053  Score=48.13  Aligned_cols=125  Identities=18%  Similarity=0.240  Sum_probs=79.4

Q ss_pred             HhhhhcCCCEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEEcCCCC------CeeEEEeec
Q 024436           16 LFINSSTQGVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNR------NHISVILSG   86 (268)
Q Consensus        16 ~~~~~~~~~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~--~~~~~~~~~~~~------~~~~~~~~~   86 (268)
                      +|+|-...+=....+.+ -..-..+.|+.||.++.++.-+|.|..+..+.+  .|.-. ....+=      +-...++.+
T Consensus        88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG  166 (399)
T KOG0296|consen   88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAG  166 (399)
T ss_pred             EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEee
Confidence            45665555334444443 246788899999999999888999988865433  22211 000000      112344577


Q ss_pred             CCcceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           87 DKTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      ...|.+|.|...++. .+.+..+-...+.=.|.|||+++... ..++.|.+|++..+
T Consensus       167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTG  222 (399)
T ss_pred             cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCC
Confidence            788999988877633 44444444444566889999977655 45799999999854

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.16  Score=45.31  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEeecCCcceE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVILSGDKTGRL   92 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~g~v   92 (268)
                      +.+.+..++-..-..++..+||..+++.. .+..|..|+++...-....          .-+|+..++...   ..++ +
T Consensus       186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA---t~da-v  261 (445)
T KOG2139|consen  186 HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA---TCDA-V  261 (445)
T ss_pred             chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe---cccc-e
Confidence            44556666656678889999999888754 5778888888753111111          113443333221   2222 2


Q ss_pred             EEEe--CCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC------C--ceeEEEeCC--------
Q 024436           93 MKYD--PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA------G--TIEIVAQLP--------  154 (268)
Q Consensus        93 ~~~d--~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~------g--~~~~~~~l~--------  154 (268)
                      +++=  ..+...+...-+-..-.+-.++|+|++|.++-+..-+|++...++...      +  .....++|+        
T Consensus       262 frlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~  341 (445)
T KOG2139|consen  262 FRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ  341 (445)
T ss_pred             eeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence            2221  111111222222236678899999999999999999999988775311      1  111223331        


Q ss_pred             ----CCCCceEEcCCCCEEEEEecCCC
Q 024436          155 ----GFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       155 ----g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                          |.+.-|++||.|...+..+.+..
T Consensus       342 ~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  342 RLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             ccccCccceeeECCCCCEEEEEEcCCc
Confidence                46889999999987777766543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.05  E-value=0.011  Score=56.23  Aligned_cols=70  Identities=23%  Similarity=0.372  Sum_probs=50.9

Q ss_pred             cCCCCcceEEEccCCCEEEEEecCCc-------------------EEEEEEccCCC----CCceeEEEeC-C--------
Q 024436          107 GNLSFPNGVALSEDGNYILLAETTSC-------------------RILRYWLKTSK----AGTIEIVAQL-P--------  154 (268)
Q Consensus       107 ~~~~~pnGia~spdg~~lyva~~~~~-------------------~I~~~~~~~~~----~g~~~~~~~l-~--------  154 (268)
                      ..+..|.||.++|....+|++-+.+.                   +|++|+.++..    ....+.+... +        
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            45778999999999889999977665                   89999887531    0122222210 0        


Q ss_pred             ---------CCCCceEEcCCCCEEEEEecCC
Q 024436          155 ---------GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       155 ---------g~Pdgia~d~dG~l~va~~~~~  176 (268)
                               ..||||++|++|+||++.-.+.
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~  457 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGGG  457 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCCEEEEeCCCC
Confidence                     2599999999999999987665

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.04  E-value=0.14  Score=45.99  Aligned_cols=101  Identities=20%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce-----------EEEEE-----EcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR-----------WLHFA-----RTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~-----------~~~~~-----~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      --+++.+|||+.+.++..+|.|..|+|.. ..           ++..+     ...+.| +   +.+..++|.+..+|..
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~---las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-R---LASSSKDGSVRIWDTK  235 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-c---eecccCCCCEEEEEcc
Confidence            45789999999999999999999999742 21           01111     001111 1   1234567788888877


Q ss_pred             CCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .++..... .+-..-..+.+.-+| +|| +.+..++|.+|+...+
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwGG~g-liy-SgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWGGEG-LIY-SGSQDRTIKVWRALDG  278 (480)
T ss_pred             CceEEEEeccCccceEEEEEcCCc-eEE-ecCCCceEEEEEccch
Confidence            55544444 333444688998776 565 7788899999998753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.2  Score=43.65  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             CCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCcc--eEEEEeCCCC
Q 024436           34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKTG--RLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g--~v~~~d~~~~  100 (268)
                      ..-.+++++||.+.+++-.+ .-.|..++.+|..+......+          ++..|+  + .+....  .++.+|+++.
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv--i-~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV--I-VDERDRALYLFTVDADTT  162 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE--E-EehhcceEEEEEEcCCcc
Confidence            45788999999998887654 577778888887543322111          111122  1 222333  4456777643


Q ss_pred             eEEE-----eecC----CCCcceEEEccCCCEEEEEecC-CcEEEEEE
Q 024436          101 QVTV-----LLGN----LSFPNGVALSEDGNYILLAETT-SCRILRYW  138 (268)
Q Consensus       101 ~~~~-----~~~~----~~~pnGia~spdg~~lyva~~~-~~~I~~~~  138 (268)
                      ....     -.+.    -..-.|+|++|+++.|||+-.- --+|+.++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            2211     1111    2234599999999999998533 33566555

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=97.01  E-value=0.0043  Score=37.32  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             cCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436          119 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  163 (268)
Q Consensus       119 pdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d  163 (268)
                      ||+++|||++...+.|.+++.....   ..........|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~---~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK---VIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe---EEEEEECCCCCceEEeC
Confidence            6899999999999999999985421   11112234579999875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.99  E-value=0.47  Score=47.57  Aligned_cols=136  Identities=15%  Similarity=0.082  Sum_probs=79.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-----Ce----EEEEEEc---------CCCCCeeEEEeecCCcceEEEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-----RR----WLHFART---------SPNRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-----~~----~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~   95 (268)
                      ..-.+++|+|+|++++++..++.|..|+.+.     ..    .......         .....+   +.....+|.|..|
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~---las~~~Dg~v~lW  560 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ---VASSNFEGVVQVW  560 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCE---EEEEeCCCeEEEE
Confidence            3467899999999999999999999887532     10    0011100         001111   2233456788888


Q ss_pred             eCCCCeEEE-eecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEE-cCCCCEEEEE
Q 024436           96 DPATKQVTV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGI  172 (268)
Q Consensus        96 d~~~~~~~~-~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~-d~dG~l~va~  172 (268)
                      |..+++... +..+-..-+.++|+| |++ ++++-+..+.|..|++..+..  ...+. .......+.+ .++|+++++.
T Consensus       561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~--~~~~~-~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        561 DVARSQLVTEMKEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVS--IGTIK-TKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             ECCCCeEEEEecCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcE--EEEEe-cCCCeEEEEEeCCCCCEEEEE
Confidence            887665433 334444567999997 665 667777889999999874221  11111 1122334555 3467766555


Q ss_pred             ecCC
Q 024436          173 HSRR  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ...+
T Consensus       637 s~dg  640 (793)
T PLN00181        637 SADH  640 (793)
T ss_pred             eCCC
Confidence            4443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.97  E-value=0.029  Score=49.15  Aligned_cols=217  Identities=15%  Similarity=0.144  Sum_probs=107.8

Q ss_pred             EEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCCCCee-------E-------EE-eecCCc
Q 024436           26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPNRNHI-------S-------VI-LSGDKT   89 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~~~~~-------~-------~~-~~~~~~   89 (268)
                      +.|..+.-..||+-.|+|||+.++++.-||-|-.|+- .|+.-...-.- ...+|+       .       ++ .++..+
T Consensus       206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh-hhcceeecccceEEEeecccHHHhhccCcC
Confidence            3455565567999999999999999999999988763 44311100000 000000       0       01 122334


Q ss_pred             c--eEEEEeCCCCe-EEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           90 G--RLMKYDPATKQ-VTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        90 g--~v~~~d~~~~~-~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      |  .||++..  |. ++.+. ..-..-..+.||.|+..+. +.+..+.+..-.+..++.  ...|..-..+.+-..+.+|
T Consensus       285 GkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~--LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  285 GKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKC--LKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             CcEEEEEEec--chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchh--HHHhcCccccccceEEcCC
Confidence            4  4566543  43 22222 2223345789999998775 556777766655553321  1222222235667777888


Q ss_pred             CCEEEEEecCCC-cce-----eeeEeeCccce---eeeecccccee--eeeeccccCCCcEEEEEECCCCCEEEEEEcCC
Q 024436          166 GGFWVGIHSRRK-GIS-----KLVLSFPWIGN---VLIKLPIDIVK--IHSSLVKLSGNGGMAMRISEQGNVLEILEEIG  234 (268)
Q Consensus       166 G~l~va~~~~~~-~~~-----~~v~~~~~~g~---~l~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  234 (268)
                      |+-.+++...++ +++     +.+.-|.+.+.   +..-++.|..+  ...|-  .+   ..++.++-.|+++.++....
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rs---ntv~imn~qGQvVrsfsSGk  434 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RS---NTVYIMNMQGQVVRSFSSGK  434 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CC---CeEEEEeccceEEeeeccCC
Confidence            876665554432 111     01222222221   12222222211  11121  11   34778888999999997532


Q ss_pred             CCceeceEEEE-EeCCEEEE
Q 024436          235 RKMWRSISEVE-EKDGNLWI  253 (268)
Q Consensus       235 g~~~~~~s~~~-~~~g~Lyv  253 (268)
                      .+.-..+..+. +.++++|.
T Consensus       435 REgGdFi~~~lSpkGewiYc  454 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYC  454 (508)
T ss_pred             ccCCceEEEEecCCCcEEEE
Confidence            12112233332 34555554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.89  E-value=0.0084  Score=53.70  Aligned_cols=60  Identities=30%  Similarity=0.233  Sum_probs=42.5

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-------CCCCCceEEcCC----CCEEEEEec
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-------PGFPDNIKRSPR----GGFWVGIHS  174 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-------~g~Pdgia~d~d----G~l~va~~~  174 (268)
                      ..|-.|++.|||+ |||++. .++|++++.++..   ...+.++       .+.+-||+++++    +.||++...
T Consensus         2 ~~P~~~a~~pdG~-l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~   72 (331)
T PF07995_consen    2 NNPRSMAFLPDGR-LLVAER-SGRIWVVDKDGSL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN   72 (331)
T ss_dssp             SSEEEEEEETTSC-EEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred             CCceEEEEeCCCc-EEEEeC-CceEEEEeCCCcC---cceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence            5688999999986 899998 8999999955421   1223222       235789999995    789998874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.86  E-value=0.035  Score=48.06  Aligned_cols=90  Identities=18%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             ecCCcceEEEEeCCCCeEEE-ee--cCCCCcceEEEccCCCEEEEEec----CCcEEEEEEccCCCCCceeEEEeCCCCC
Q 024436           85 SGDKTGRLMKYDPATKQVTV-LL--GNLSFPNGVALSEDGNYILLAET----TSCRILRYWLKTSKAGTIEIVAQLPGFP  157 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~-~~--~~~~~pnGia~spdg~~lyva~~----~~~~I~~~~~~~~~~g~~~~~~~l~g~P  157 (268)
                      ...+.---+.+|+++++.-+ +.  ++-.|=-.=.|||||++||.+|.    ..+-|-+||...+ ......|..-.-.|
T Consensus        86 ARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGp  164 (366)
T COG3490          86 ARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGP  164 (366)
T ss_pred             EecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCc
Confidence            33333345677887544322 21  22222223469999999999875    3457788887532 11112222211259


Q ss_pred             CceEEcCCCCEEEEEecC
Q 024436          158 DNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       158 dgia~d~dG~l~va~~~~  175 (268)
                      .-+.+-+||++.|..+++
T Consensus       165 Hev~lm~DGrtlvvanGG  182 (366)
T COG3490         165 HEVTLMADGRTLVVANGG  182 (366)
T ss_pred             ceeEEecCCcEEEEeCCc
Confidence            999999999988776654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.86  E-value=0.091  Score=48.20  Aligned_cols=145  Identities=14%  Similarity=0.206  Sum_probs=88.7

Q ss_pred             CEEEEecCCCCCcceEEECCCC-CEEEEEeCCCeEEEEeCC-CCe----------EEEEEEcCCCCCeeEEEeecCCcce
Q 024436           24 GVVQYQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQD-QRR----------WLHFARTSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~-g~~----------~~~~~~~~~~~~~~~~~~~~~~~g~   91 (268)
                      ++..+..+.  -|.++-+.||+ ++++++..+++|..||-. |+.          +....-...++.|+.    ....+.
T Consensus       292 ~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis----sSDdks  365 (503)
T KOG0282|consen  292 VLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS----SSDDKS  365 (503)
T ss_pred             EEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee----eccCcc
Confidence            455555665  79999999999 888999999999999864 321          111111112222222    122334


Q ss_pred             EEEEeCCCCeEEE-ee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEe--CCCCCCceEEcCC
Q 024436           92 LMKYDPATKQVTV-LL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQ--LPGFPDNIKRSPR  165 (268)
Q Consensus        92 v~~~d~~~~~~~~-~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~--l~g~Pdgia~d~d  165 (268)
                      +..++-+..-... ..  .....| .++..|.++ .+++.+..++|..|.+... .+...+.|..  .+|++-.+.+.||
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMP-CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCc-ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            4444443221111 11  112223 799999997 6689999999999987643 2222334432  5689999999999


Q ss_pred             CCEEEEEecCC
Q 024436          166 GGFWVGIHSRR  176 (268)
Q Consensus       166 G~l~va~~~~~  176 (268)
                      |.+.+.....+
T Consensus       444 G~~l~SGdsdG  454 (503)
T KOG0282|consen  444 GRTLCSGDSDG  454 (503)
T ss_pred             CCeEEeecCCc
Confidence            98766555544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.81  E-value=0.028  Score=50.23  Aligned_cols=119  Identities=25%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             CcceEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecC
Q 024436           35 GPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGN  108 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~------g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  108 (268)
                      -+|||++.++|.++++.-..      .+|++++++|+....+...  .               -+..... +.  .-...
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP--~---------------~~~~~~~-~~--~~~~~  145 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVP--A---------------AFLPDAN-GT--SGRRN  145 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccc--c---------------ccccccC-cc--ccccC
Confidence            68899998899977777777      8899988887643322100  0               0000000 00  01112


Q ss_pred             CCCcceEEEccCCCEEEEEecCC---------------cEEEEEEccC-CCCCceeEEE-eCC--------CCCCceEEc
Q 024436          109 LSFPNGVALSEDGNYILLAETTS---------------CRILRYWLKT-SKAGTIEIVA-QLP--------GFPDNIKRS  163 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~---------------~~I~~~~~~~-~~~g~~~~~~-~l~--------g~Pdgia~d  163 (268)
                      -....||+++|||+.||++....               .||++|++.. +..  ...+. .+.        ..+-.++.-
T Consensus       146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al  223 (326)
T PF13449_consen  146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAAL  223 (326)
T ss_pred             CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEE
Confidence            23356899999999888764322               4788888763 211  12221 222        134456666


Q ss_pred             CCCCEEEEEecC
Q 024436          164 PRGGFWVGIHSR  175 (268)
Q Consensus       164 ~dG~l~va~~~~  175 (268)
                      ++|+++|-+...
T Consensus       224 ~d~~lLvLER~~  235 (326)
T PF13449_consen  224 PDGRLLVLERDF  235 (326)
T ss_pred             CCCcEEEEEccC
Confidence            788888877653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.78  E-value=0.31  Score=42.30  Aligned_cols=144  Identities=14%  Similarity=0.078  Sum_probs=91.6

Q ss_pred             ecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCC------C-eeEEEeecCCcceEEEEeCCCC
Q 024436           29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNR------N-HISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        29 ~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~------~-~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ..+...+-.+..|.+|++ ++++.+|.....||-. |.....|....++-      + -...+.++..+..-+.+|...+
T Consensus       141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~  219 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG  219 (343)
T ss_pred             ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence            334445677778888888 8889999999999854 44444553221110      0 1122334445555555555544


Q ss_pred             e-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEecCC
Q 024436          101 Q-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      . ++.+..+-.--|-+.|-|+|. -|++.+......-||+....  +...+..  .-..-..+++...|+|+.+.+...
T Consensus       220 ~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  220 QCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             ceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence            4 444555566789999999995 88999999998899986321  2333332  122367899999999877766543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.74  E-value=0.42  Score=43.95  Aligned_cols=142  Identities=18%  Similarity=0.266  Sum_probs=89.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE----------EEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE-
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW----------LHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT-  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-  103 (268)
                      ...++.|-.||+++.++...|.|..++...+.+          ..+....+..+-+  +..+.....+..+|.++..+. 
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~--l~s~sDd~v~k~~d~s~a~v~~  147 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTM--LVSGSDDKVVKYWDLSTAYVQA  147 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeE--EEecCCCceEEEEEcCCcEEEE
Confidence            467888999999888888889998888443210          0111111222212  223333444556666655543 


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCC-CceEEcCCCCEEEEEecCCCccee
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFP-DNIKRSPRGGFWVGIHSRRKGISK  181 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~P-dgia~d~dG~l~va~~~~~~~~~~  181 (268)
                      .+.+.-.+-...+++|..++++++.+..+.|..||.....    ....++ .|.| ..+..=|.|.+++++.++.-++++
T Consensus       148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD  223 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD  223 (487)
T ss_pred             EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence            2334455677899999988999999999999999986321    222333 2334 567777888888888777655444


Q ss_pred             e
Q 024436          182 L  182 (268)
Q Consensus       182 ~  182 (268)
                      .
T Consensus       224 l  224 (487)
T KOG0310|consen  224 L  224 (487)
T ss_pred             e
Confidence            4

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.72  E-value=0.64  Score=46.02  Aligned_cols=218  Identities=17%  Similarity=0.154  Sum_probs=120.1

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCC------------eEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR------------RWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      .+-..|+++|+|+.+++...+|.|.+|.....            .+...+.      +...++.+..++.|.++.-..++
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~------~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC------YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee------cccceEEeeccceEEEeeCCCCC
Confidence            45788999999998888777888888753211            1111111      11123344455667666655566


Q ss_pred             EEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcce
Q 024436          102 VTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  180 (268)
Q Consensus       102 ~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~  180 (268)
                      ...+...+..| +.++++-+|+++ ++.+..-.|...+.++.  +...++....+-.-++.+||+|++.+.....+.   
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~---  161 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK---  161 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEE-EeecCceeEEEEecccc--chheeecccCCceeeeeEcCCCCEEEEEecCce---
Confidence            66555556665 689999999744 56666667777777642  223333333333458889999987766555543   


Q ss_pred             eeeEeeC-ccceeeeeccccc---eee-e--eeccccCCC---------cEEEEEECCC-CCEEEEEEcCCCCceeceEE
Q 024436          181 KLVLSFP-WIGNVLIKLPIDI---VKI-H--SSLVKLSGN---------GGMAMRISEQ-GNVLEILEEIGRKMWRSISE  243 (268)
Q Consensus       181 ~~v~~~~-~~g~~l~~i~~~~---~~~-~--~~~~~~~~~---------~~~~~~~~~~-G~~~~~~~~~~g~~~~~~s~  243 (268)
                        |..+. .++.+...++.-.   ... .  ++...-.|+         ...+..++++ +.....+.+..-  -+..+.
T Consensus       162 --v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~--ss~~~~  237 (933)
T KOG1274|consen  162 --VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS--SSKFSD  237 (933)
T ss_pred             --EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc--ccceEE
Confidence              44443 2333322222110   000 0  000000111         1345666664 455556655321  111344


Q ss_pred             EEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          244 VEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       244 ~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +.+ ..|+-.-++..++.|++-+.+
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecc
Confidence            444 457777788888888888765

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.71  E-value=0.033  Score=52.95  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=37.1

Q ss_pred             cCCCCcceEEEccCCCEEEEE-ecCCcEE-----------EEEEc--------cCCCCCceeEEEeCC--CCCCceEEcC
Q 024436          107 GNLSFPNGVALSEDGNYILLA-ETTSCRI-----------LRYWL--------KTSKAGTIEIVAQLP--GFPDNIKRSP  164 (268)
Q Consensus       107 ~~~~~pnGia~spdg~~lyva-~~~~~~I-----------~~~~~--------~~~~~g~~~~~~~l~--g~Pdgia~d~  164 (268)
                      ..+..|-+|+|+|+|+ ||++ |...+..           +.+..        .+...+....|...|  .-..|++++|
T Consensus       433 ~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC
Confidence            3467889999999997 5555 4443321           11211        111223333343322  2457899999


Q ss_pred             CCC-EEEEEe
Q 024436          165 RGG-FWVGIH  173 (268)
Q Consensus       165 dG~-l~va~~  173 (268)
                      ||+ |||...
T Consensus       512 Dg~tlFvniQ  521 (524)
T PF05787_consen  512 DGRTLFVNIQ  521 (524)
T ss_pred             CCCEEEEEEe
Confidence            996 777543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.70  E-value=0.047  Score=48.86  Aligned_cols=133  Identities=23%  Similarity=0.338  Sum_probs=84.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe----------EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE--
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR----------WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV--  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--  102 (268)
                      .--+++|+|+|..++++.+|-.+..||.+.+.          |..-..-+|++.++.   ++..+|.|..+||++|+.  
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA---SG~~dg~I~lwdpktg~~~g  193 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA---SGSKDGSIRLWDPKTGQQIG  193 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhh---ccccCCeEEEecCCCCCccc
Confidence            44578999999999999999999888887642          222223355554332   456789999999988753  


Q ss_pred             EEeecCCCCcceEEE-----ccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEEEec
Q 024436          103 TVLLGNLSFPNGVAL-----SEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       103 ~~~~~~~~~pnGia~-----spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va~~~  174 (268)
                      +.+..+-..-++++|     .|..+ .+.+.+..+.|..|++..+.    .+ ..+.|   -...+++..+|-+|-+...
T Consensus       194 ~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~----~~-~~lsgHT~~VTCvrwGG~gliySgS~D  267 (480)
T KOG0271|consen  194 RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT----CV-RTLSGHTASVTCVRWGGEGLIYSGSQD  267 (480)
T ss_pred             ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce----EE-EEeccCccceEEEEEcCCceEEecCCC
Confidence            234444455566665     45565 66777888999999986421    11 12222   1345566666666665554


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      ..
T Consensus       268 rt  269 (480)
T KOG0271|consen  268 RT  269 (480)
T ss_pred             ce
Confidence            43

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.69  E-value=0.026  Score=51.63  Aligned_cols=141  Identities=21%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             CCCcceEEECC-CCCEEEEEeCCCeEEEEeC--CCCeEEEEEEcCCC-C-----CeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           33 AIGPESLAFDA-LGEGPYTGVSDGRIIKWHQ--DQRRWLHFARTSPN-R-----NHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        33 ~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~--~g~~~~~~~~~~~~-~-----~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -.+-..+-+-| .+.++.++..|++|..|+.  +++.+..|...... +     +-...+++..-+..|-.+|.+||++.
T Consensus       214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~  293 (503)
T KOG0282|consen  214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL  293 (503)
T ss_pred             ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence            45666777788 8998888888999998864  45555555432110 0     00112234445667888999999988


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEecCC
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .-......|+.+-|.||+..+|++...+.+|..||+..+++  ...+. +| |--.-|.+=++|+-+|+.....
T Consensus       294 ~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL-g~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  294 SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL-GAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh-hheeeeEEccCCceEeeeccCc
Confidence            77777788999999999988999999999999999974321  01111 13 2234555656676666555443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.64  E-value=0.13  Score=47.00  Aligned_cols=44  Identities=11%  Similarity=0.069  Sum_probs=32.8

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEE
Q 024436           91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI  134 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I  134 (268)
                      .++..|+.+...++..-+...|.|++|+|....||++|-....+
T Consensus       220 ~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         220 GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            45555665555566777888999999999955799999877444

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.60  E-value=0.56  Score=45.42  Aligned_cols=138  Identities=14%  Similarity=0.055  Sum_probs=73.1

Q ss_pred             CCcceEEECCCCCEEEEEe------CC--CeEEEEeCCCCeEEEE-EE-------cCCCCCeeEE---------EeecCC
Q 024436           34 IGPESLAFDALGEGPYTGV------SD--GRIIKWHQDQRRWLHF-AR-------TSPNRNHISV---------ILSGDK   88 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~------~~--g~I~~~~~~g~~~~~~-~~-------~~~~~~~~~~---------~~~~~~   88 (268)
                      ..+...+++|||+.++...      ++  .+|+..+.++.. ..+ ..       .++++.++..         +.....
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            4567889999999765433      12  366666654432 111 10       0122221110         011123


Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEE---EEccCCC--CCceeEEEe-CCCCCCceEE
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR---YWLKTSK--AGTIEIVAQ-LPGFPDNIKR  162 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~---~~~~~~~--~g~~~~~~~-l~g~Pdgia~  162 (268)
                      .+.++.++.+.++.+.  ..-.....+.|||||++|.+.-  .++|++   .+.+++.  ++....+.. +...+..+.+
T Consensus       429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence            4566666555454443  1122477899999999887765  368887   4433322  212221221 3233577888


Q ss_pred             cCCCCEEEEEecCC
Q 024436          163 SPRGGFWVGIHSRR  176 (268)
Q Consensus       163 d~dG~l~va~~~~~  176 (268)
                      -.++.|+|+.....
T Consensus       505 ~~~~~L~V~~~~~~  518 (591)
T PRK13616        505 RTGDSLVVGRSDPE  518 (591)
T ss_pred             ecCCEEEEEecCCC
Confidence            88888887755443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=96.56  E-value=0.67  Score=43.28  Aligned_cols=90  Identities=21%  Similarity=0.230  Sum_probs=60.8

Q ss_pred             eecCCcceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceE
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK  161 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia  161 (268)
                      +++.-.|.|..++..+|.--.+..  +-..-++++.+..+. +| +-...+.++++++.+........ ..++..|-|++
T Consensus       336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~-t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~la  412 (603)
T KOG0318|consen  336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LF-TIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLA  412 (603)
T ss_pred             EeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EE-EEecCCeEEEEecccCcccccce-eecCCCceeEE
Confidence            356678999999988776655542  334567899887664 65 45577899999987543333332 34666899999


Q ss_pred             EcCCCCEEEEEecCC
Q 024436          162 RSPRGGFWVGIHSRR  176 (268)
Q Consensus       162 ~d~dG~l~va~~~~~  176 (268)
                      +.++|.+.+.....+
T Consensus       413 v~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  413 VLSDGGTAVVACISD  427 (603)
T ss_pred             EcCCCCEEEEEecCc
Confidence            999987555444443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.45  E-value=0.72  Score=42.37  Aligned_cols=136  Identities=21%  Similarity=0.208  Sum_probs=81.0

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      .+-.++-|.|.-.++.++--++.+..+..||+.   +...         +...+++.-  .++.....-.+|.||..+.+
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~--~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS--VIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce--EEEecccceEEEEeeccccc
Confidence            467889999999988887777777666666652   1110         011122210  12233344567888888777


Q ss_pred             EEEeecCCC----CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecC
Q 024436          102 VTVLLGNLS----FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR  175 (268)
Q Consensus       102 ~~~~~~~~~----~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~  175 (268)
                      +..+-....    .-.-..+++|+++|. ....++.|+......+..  ... ..++|...++++++||+ ||+++..+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~el--i~s-~KieG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTKEL--ITS-FKIEGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhhhh--hhe-eeeccEEeeEEEecCCcEEEEEcCCc
Confidence            765532221    224578899998654 455778888877653211  111 12567788999999997 55544333

>PTZ00420 coronin; Provisional

Probab=96.40  E-value=0.61  Score=44.90  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             ecCCcceEEEEeCCCCe--E-------EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC
Q 024436           85 SGDKTGRLMKYDPATKQ--V-------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG  155 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~--~-------~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g  155 (268)
                      ++..++.|..||..++.  .       ..+..+-..-+.++|+|++..++++.+..+.|..|++..+..  ...+ ..+.
T Consensus        92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i-~~~~  168 (568)
T PTZ00420         92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI-NMPK  168 (568)
T ss_pred             EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE-ecCC
Confidence            33455666666654321  1       122333345678999999987877877889999999975321  1111 1233


Q ss_pred             CCCceEEcCCCCEEEEEecCCCcceeeeEee-Cccceeeeec
Q 024436          156 FPDNIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKL  196 (268)
Q Consensus       156 ~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i  196 (268)
                      ....++++++|+++++....+.     |..+ ...++.+..+
T Consensus       169 ~V~SlswspdG~lLat~s~D~~-----IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        169 KLSSLKWNIKGNLLSGTCVGKH-----MHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCEEEEEecCCE-----EEEEECCCCcEEEEE
Confidence            4678899999998876654432     3333 3445555443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.39  E-value=0.68  Score=41.38  Aligned_cols=140  Identities=18%  Similarity=0.145  Sum_probs=85.3

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      +.=-.+++++|-+..+.++..|+.|-.||.....+. .+.         ..++..+|+..   ....+.|-.+|....++
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs---~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFS---AGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEE---ecCCCeeEEEechhhhh
Confidence            334578999999998888888999988886543221 111         12333456543   34456788888875543


Q ss_pred             -EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--CC-Cc-eEEcCCCCEEEEEecCCC
Q 024436          103 -TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FP-DN-IKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       103 -~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--~P-dg-ia~d~dG~l~va~~~~~~  177 (268)
                       +...+.+..-.++++.|--+ +.++......+.+||+...     ..+..+.|  .| .. ++-.-|+.++.+.....-
T Consensus       228 IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr-----~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv  301 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR-----ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV  301 (460)
T ss_pred             HHHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc-----ceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence             33456777788999999776 5677777788888998642     12222222  11 12 222235677777666654


Q ss_pred             ccee
Q 024436          178 GISK  181 (268)
Q Consensus       178 ~~~~  181 (268)
                      ++++
T Consensus       302 rlWD  305 (460)
T KOG0285|consen  302 RLWD  305 (460)
T ss_pred             EEee
Confidence            4433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.36  E-value=0.34  Score=44.99  Aligned_cols=105  Identities=17%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ....++++++.++++...+..-...--..+|+|||+.|.++...++  .|+.+++++..   ...+.+..|.-..=.+.|
T Consensus       215 ~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt~~~gi~~~Ps~sp  291 (425)
T COG0823         215 GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLTNGFGINTSPSWSP  291 (425)
T ss_pred             CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecccCCccccCccCCC
Confidence            3336799999988877666652223335799999999988766544  78888887643   222222233222446678


Q ss_pred             CCC--EEEEEecCCCcceeeeEeeCccceeeeeccc
Q 024436          165 RGG--FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  198 (268)
Q Consensus       165 dG~--l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~  198 (268)
                      ||+  +|++...++.+    |..+...++-..++..
T Consensus       292 dG~~ivf~Sdr~G~p~----I~~~~~~g~~~~riT~  323 (425)
T COG0823         292 DGSKIVFTSDRGGRPQ----IYLYDLEGSQVTRLTF  323 (425)
T ss_pred             CCCEEEEEeCCCCCcc----eEEECCCCCceeEeec
Confidence            886  34444444433    4445555554444443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.35  E-value=0.062  Score=49.81  Aligned_cols=135  Identities=11%  Similarity=0.070  Sum_probs=91.7

Q ss_pred             hhhcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeC
Q 024436           18 INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        18 ~~~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      .++++++-+.|.--...+-+.+.+++.|+++++-....+...++.+|..+..+.                 .|--|..|.
T Consensus       199 Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~-----------------KGDQYI~Dm  261 (641)
T KOG0772|consen  199 MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS-----------------KGDQYIRDM  261 (641)
T ss_pred             ccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee-----------------ccchhhhhh
Confidence            356667666665555667889999999999988888888888899987655542                 122222222


Q ss_pred             C--CCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-C-C---CCCceEEcCCCCEEE
Q 024436           98 A--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-P-G---FPDNIKRSPRGGFWV  170 (268)
Q Consensus        98 ~--~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~-g---~Pdgia~d~dG~l~v  170 (268)
                      .  .|.+       +.-+.-+|.|+.+..|.+.+..+.+..|+++..+ ....+|..- . |   -|.-.++++||+++.
T Consensus       262 ~nTKGHi-------a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA  333 (641)
T KOG0772|consen  262 YNTKGHI-------AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA  333 (641)
T ss_pred             hccCCce-------eeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCCCcchhh
Confidence            1  1322       2234567889988899999999999999987543 345666541 1 1   367889999999877


Q ss_pred             EEecCCC
Q 024436          171 GIHSRRK  177 (268)
Q Consensus       171 a~~~~~~  177 (268)
                      +....++
T Consensus       334 agc~DGS  340 (641)
T KOG0772|consen  334 AGCLDGS  340 (641)
T ss_pred             hcccCCc
Confidence            6555553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.35  E-value=0.11  Score=50.81  Aligned_cols=162  Identities=20%  Similarity=0.255  Sum_probs=99.0

Q ss_pred             HHhhhhcCCCEEEEecCC-------------CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCC---
Q 024436           15 FLFINSSTQGVVQYQIEG-------------AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRN---   78 (268)
Q Consensus        15 ~~~~~~~~~~~~~i~~~~-------------~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~---   78 (268)
                      |.||-+|.-.|..+.+..             -..-.|+++|.-++++++...+|-+.-|+-.++.+......+..-.   
T Consensus       462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv  541 (910)
T KOG1539|consen  462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV  541 (910)
T ss_pred             eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence            456666666555555331             1245789999999988888778888777766553222111111000   


Q ss_pred             e--eEEEe-ecCCcceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC
Q 024436           79 H--ISVIL-SGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP  154 (268)
Q Consensus        79 ~--~~~~~-~~~~~g~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~  154 (268)
                      |  ..+++ ..-..-.|..+|..|.++. .+.+....-|.++|||||++|..+. ....|..||+-.+.+  ...+ .++
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~wDlpt~~l--ID~~-~vd  617 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTWDLPTGTL--IDGL-LVD  617 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEEeccCcce--eeeE-ecC
Confidence            0  00111 1123346888888776654 3455667889999999999997664 668999999864321  1111 123


Q ss_pred             CCCCceEEcCCCCEEEEEecCCCcce
Q 024436          155 GFPDNIKRSPRGGFWVGIHSRRKGIS  180 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~~~~~~~~~  180 (268)
                      .-+-.+.+.|+|.++.+.+.....+.
T Consensus       618 ~~~~sls~SPngD~LAT~Hvd~~gIy  643 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHVDQNGIY  643 (910)
T ss_pred             CcceeeEECCCCCEEEEEEecCceEE
Confidence            34678899999987777766543333

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.33  E-value=0.68  Score=40.87  Aligned_cols=170  Identities=11%  Similarity=0.051  Sum_probs=90.7

Q ss_pred             ecCCcceEEEE--eCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC------CCc-eeEEE-e--
Q 024436           85 SGDKTGRLMKY--DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK------AGT-IEIVA-Q--  152 (268)
Q Consensus        85 ~~~~~g~v~~~--d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~------~g~-~~~~~-~--  152 (268)
                      +....|+++.+  +++ |++......+..|-|++.+++  .||++..  ..||+|.-....      .+. -..+. +  
T Consensus        23 sTYQagkL~~ig~~~~-g~l~~~~r~F~r~MGl~~~~~--~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~   97 (335)
T TIGR03032        23 TTYQAGKLFFIGLQPN-GELDVFERTFPRPMGLAVSPQ--SLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRAS   97 (335)
T ss_pred             EeeecceEEEEEeCCC-CcEEEEeeccCccceeeeeCC--eEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeee
Confidence            44577888877  444 778888888999999999876  5999854  688888322111      011 01111 1  


Q ss_pred             -CCC--CCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc--------ceeeeeec--cccCCCcEEEE-
Q 024436          153 -LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID--------IVKIHSSL--VKLSGNGGMAM-  218 (268)
Q Consensus       153 -l~g--~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~--------~~~~~~~~--~~~~~~~~~~~-  218 (268)
                       ..|  --+-|++ .++.+|.....-.|     +....+.-.+.-....|        .+|...-+  ....|.|+..+ 
T Consensus        98 ~~TGdidiHdia~-~~~~l~fVNT~fSC-----Latl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~  171 (335)
T TIGR03032        98 YVTGDIDAHDLAL-GAGRLLFVNTLFSC-----LATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALS  171 (335)
T ss_pred             eeccCcchhheee-cCCcEEEEECccee-----EEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEee
Confidence             112  2457888 56788887776665     55444444443333332        22222111  11122111111 


Q ss_pred             --------EECC-CCCEEEEEEcCCCCce----eceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          219 --------RISE-QGNVLEILEEIGRKMW----RSISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       219 --------~~~~-~G~~~~~~~~~~g~~~----~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                              +-+. +|-++-.+  ++++.+    +.+-+--+++|+||+.+.....+.++|.+
T Consensus       172 ~sD~~~gWR~~~~~gG~vidv--~s~evl~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~  231 (335)
T TIGR03032       172 QSDVADGWREGRRDGGCVIDI--PSGEVVASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQ  231 (335)
T ss_pred             ccCCcccccccccCCeEEEEe--CCCCEEEcCccCCcCCcEeCCeEEEEECCCCEEEEEcCC
Confidence                    0000 11111111  112221    11222346899999999999999999875

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.30  E-value=0.05  Score=49.90  Aligned_cols=65  Identities=14%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc--eeEEE---------------eCCCCCCceEEcCCCC-EEEE
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVA---------------QLPGFPDNIKRSPRGG-FWVG  171 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~---------------~l~g~Pdgia~d~dG~-l~va  171 (268)
                      ..+..|.+|.|.++|||+++..+.|..||+.++....  .+++.               .+.|.|.=+.+.-||+ ||++
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            4578999999999999999999999999998643111  11111               1235688899999995 9998


Q ss_pred             Eec
Q 024436          172 IHS  174 (268)
Q Consensus       172 ~~~  174 (268)
                      ..-
T Consensus       392 nSL  394 (461)
T PF05694_consen  392 NSL  394 (461)
T ss_dssp             ---
T ss_pred             eec
Confidence            754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.30  E-value=0.028  Score=49.36  Aligned_cols=65  Identities=26%  Similarity=0.417  Sum_probs=47.1

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCC-CCceeEEEeCC---CCCCceEEcC--CCCEEEEEecC
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-AGTIEIVAQLP---GFPDNIKRSP--RGGFWVGIHSR  175 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~-~g~~~~~~~l~---g~Pdgia~d~--dG~l~va~~~~  175 (268)
                      ....|++++++| .||+++...+.|.+|+.+++. ..+.+.+.+-+   -.|+++.++.  +|.||+....-
T Consensus       186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             -SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred             CCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence            456799999988 699999999999999998642 12345555422   3799999999  99999987543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.27  E-value=0.36  Score=42.43  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeec-CCCCcce
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLG-NLSFPNG  114 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnG  114 (268)
                      .+++.|++-|.++.++..+|+|..++.+...                                   +..... +..--..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------------------iar~lsaH~~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------------------IARMLSAHVRPITS   70 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------------------hhhhhhccccceeE
Confidence            6777788888877777777877766654321                                   111111 1111247


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          115 VALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       115 ia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      ++||+||+ ..++.+....|..||+..+
T Consensus        71 l~WS~dgr-~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   71 LCWSRDGR-KLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             EEecCCCC-EeeeecCCceeEEEeccCC
Confidence            99999997 5567778899999998643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.25  E-value=0.11  Score=45.58  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEEc----------------CCCCCeeEEEeecCCcceE
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFART----------------SPNRNHISVILSGDKTGRL   92 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~v   92 (268)
                      ....+..+++|+|||..++++.+. .|..++  ..|..-......                +|-..-..+...-...-.|
T Consensus       156 de~taAhsL~Fs~DGeqlfaGykr-cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~gi  234 (406)
T KOG2919|consen  156 DEYTAAHSLQFSPDGEQLFAGYKR-CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGI  234 (406)
T ss_pred             HhhhhheeEEecCCCCeEeecccc-eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeee
Confidence            346789999999999999997642 333333  334321111100                1111101111111112234


Q ss_pred             EEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           93 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      |..+.. +-+..+.+.-..-..+.|.+||+.||+-.+...+|..||+.
T Consensus       235 y~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  235 YNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             EecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            554443 33344444444455688999999999998888999999986

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.053  Score=44.89  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             CcceEEEEeCCCCeEEEee-------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436           88 KTGRLMKYDPATKQVTVLL-------------GNLSFPNGVALSEDGNYILLAETTSCRILRYW  138 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~-------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~  138 (268)
                      .+.+|.|++|++|++....             .....+||||+.|+++++|++.-.-..++-..
T Consensus       194 ~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk  257 (262)
T COG3823         194 QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK  257 (262)
T ss_pred             eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence            3568999999999987643             22357899999999999999865444444433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.19  E-value=0.19  Score=42.72  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEE--------EEEcCCCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLH--------FARTSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      .++.+..+.  .+.++-+++||+++.+. ..+.|.-++++.- .+..        .+...|..   ..+..+.....+|+
T Consensus       177 ~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k---~~fVaGged~~~~k  250 (334)
T KOG0278|consen  177 EVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK---EFFVAGGEDFKVYK  250 (334)
T ss_pred             EEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCC---ceEEecCcceEEEE
Confidence            566666665  78899999999955543 3455655666531 1111        12223433   23446677789999


Q ss_pred             EeCCCCeEEEe-ecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           95 YDPATKQVTVL-LGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        95 ~d~~~~~~~~~-~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      ||-.||+-... ..+ ..--..+.|+|||. +|.+.+..+.|..|...
T Consensus       251 fDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  251 FDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT  297 (334)
T ss_pred             EeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence            99998865444 233 33346899999995 99999999988888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.14  E-value=1  Score=41.09  Aligned_cols=160  Identities=14%  Similarity=0.072  Sum_probs=77.8

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcce---------EEEcc--CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CC
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNG---------VALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP  154 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnG---------ia~sp--dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~  154 (268)
                      ..+|.++.+|+++|+..-.. ....|.+         +..+|  .++.+|++.. .+.++.+++..++    ..+.. ..
T Consensus       212 ~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~----~~W~~~~~  285 (394)
T PRK11138        212 GDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQ----IVWKREYG  285 (394)
T ss_pred             cCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCC----EEEeecCC
Confidence            45678888888877542111 1111111         11112  2346888764 5789999887432    23332 22


Q ss_pred             CCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccce-----eee---eeccccCCCcEEEEEECC-CCC
Q 024436          155 GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV-----KIH---SSLVKLSGNGGMAMRISE-QGN  225 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~-----~~~---~~~~~~~~~~~~~~~~~~-~G~  225 (268)
                       .+..++++ +|++|++...+..     ......+|+.+.+.+....     +..   .++- .+.. +.++.+|+ +|+
T Consensus       286 -~~~~~~~~-~~~vy~~~~~g~l-----~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v-~~~~-G~l~~ld~~tG~  356 (394)
T PRK11138        286 -SVNDFAVD-GGRIYLVDQNDRV-----YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVV-GDSE-GYLHWINREDGR  356 (394)
T ss_pred             -CccCcEEE-CCEEEEEcCCCeE-----EEEECCCCcEEEcccccCCCcccCCEEECCEEEE-EeCC-CEEEEEECCCCC
Confidence             23345553 5678887765531     2223456666543322100     000   0010 1122 45566666 477


Q ss_pred             EEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEe
Q 024436          226 VLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN  265 (268)
Q Consensus       226 ~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~  265 (268)
                      ++..+.-..+..   .+.-+..+++||+++..+ .|-.++
T Consensus       357 ~~~~~~~~~~~~---~s~P~~~~~~l~v~t~~G-~l~~~~  392 (394)
T PRK11138        357 FVAQQKVDSSGF---LSEPVVADDKLLIQARDG-TVYAIT  392 (394)
T ss_pred             EEEEEEcCCCcc---eeCCEEECCEEEEEeCCc-eEEEEe
Confidence            766654321111   123344788999997755 333343

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.10  E-value=0.97  Score=40.41  Aligned_cols=207  Identities=17%  Similarity=0.148  Sum_probs=104.6

Q ss_pred             EEEEecCC------CCCcceEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEEc--------CCCCCeeEEEeecCC
Q 024436           25 VVQYQIEG------AIGPESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFART--------SPNRNHISVILSGDK   88 (268)
Q Consensus        25 ~~~i~~~~------~~~P~gia~~~dG~~l~~~~--~~g~I~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~   88 (268)
                      ...|.+|.      +..++-++++.||+.+|+-+  ..-.|..+|...+.+..-...        .+++.|.  .+.  .
T Consensus        80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~--~lC--~  155 (342)
T PF06433_consen   80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS--MLC--G  155 (342)
T ss_dssp             EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE--EEE--T
T ss_pred             cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceE--EEe--c
Confidence            44555653      35678889999999998855  357787888776644332211        1122222  223  3


Q ss_pred             cceEE--EEeCCCCeEEEeecCCC------CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-------
Q 024436           89 TGRLM--KYDPATKQVTVLLGNLS------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-------  153 (268)
Q Consensus        89 ~g~v~--~~d~~~~~~~~~~~~~~------~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-------  153 (268)
                      +|++.  .+|.+ |+...-...+-      .-+.-+++.++.++|+. +.++.|+..++.+....-...+.-+       
T Consensus       156 DGsl~~v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~  233 (342)
T PF06433_consen  156 DGSLLTVTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD  233 (342)
T ss_dssp             TSCEEEEEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred             CCceEEEEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCcccccc
Confidence            45554  55555 54433221111      11344555555556664 4779999999986532112222111       


Q ss_pred             ---CCCCCceEEcC-CCCEEEEEecCCC----cceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCC
Q 024436          154 ---PGFPDNIKRSP-RGGFWVGIHSRRK----GISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG  224 (268)
Q Consensus       154 ---~g~Pdgia~d~-dG~l~va~~~~~~----~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G  224 (268)
                         ||.=.-+++++ .++|||-.+.+..    .=-..|+.+ ..+++.+++++++. ++.++--....+ ..++.++...
T Consensus       234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~-P~L~~~~~~~  311 (342)
T PF06433_consen  234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDK-PLLYALSAGD  311 (342)
T ss_dssp             TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS--EEEEEETTT
T ss_pred             CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCC-cEEEEEcCCC
Confidence               23334478875 5679997765321    011225555 57888899888752 222111111222 4466666555


Q ss_pred             CEEEEEEcCCCCcee
Q 024436          225 NVLEILEEIGRKMWR  239 (268)
Q Consensus       225 ~~~~~~~~~~g~~~~  239 (268)
                      .-+.+++...|+.++
T Consensus       312 ~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  312 GTLDVYDAATGKLVR  326 (342)
T ss_dssp             TEEEEEETTT--EEE
T ss_pred             CeEEEEeCcCCcEEe
Confidence            566666666666544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.08  E-value=0.91  Score=39.88  Aligned_cols=208  Identities=13%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE---eecCC
Q 024436           43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQVTV---LLGNL  109 (268)
Q Consensus        43 ~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~  109 (268)
                      -+|..++++..|.+|..+|...+.-.+....          .++.. ...++++..+|.|..++.+  .++.   +...-
T Consensus        51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~--~W~~~~slK~H~  127 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVG--SWELLKSLKAHK  127 (362)
T ss_pred             ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcC--CeEEeeeecccc
Confidence            3477777788889998888754321110000          01110 0123455677888877765  3333   23334


Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-c
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-W  188 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~  188 (268)
                      ..-|+|++.|-|+ |-.+-...+.+..|++-.+.   ..-...|...+..+.+++.|.-|+-...+.      |..|. .
T Consensus       128 ~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr---~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~------i~i~q~d  197 (362)
T KOG0294|consen  128 GQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR---VAFVLNLKNKATLVSWSPQGDHFVVSGRNK------IDIYQLD  197 (362)
T ss_pred             cccceeEecCCCc-eEEEEcCCceeeeehhhcCc---cceeeccCCcceeeEEcCCCCEEEEEeccE------EEEEecc
Confidence            4589999999997 77888888999989885322   222334656788899999998555444443      33342 3


Q ss_pred             cceeeeecccccee--eee-----eccccCCCcEEEEEECCC-CCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCe
Q 024436          189 IGNVLIKLPIDIVK--IHS-----SLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY  260 (268)
Q Consensus       189 ~g~~l~~i~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~  260 (268)
                      +-+++..+..|.+.  +++     |+-+.+.  .++...|.+ +.+...+.....+ +..+-......+.+.++-..+..
T Consensus       198 ~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--~~i~~~D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  198 NASVFREIENPKRILCATFLDGSELLVGGDN--EWISLKDTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             cHhHhhhhhccccceeeeecCCceEEEecCC--ceEEEeccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccCce
Confidence            34455666555221  111     1111222  344555554 5555554443322 34333333333455555444455


Q ss_pred             EEEEeC
Q 024436          261 AGLYNY  266 (268)
Q Consensus       261 v~~~~~  266 (268)
                      |-+-|.
T Consensus       275 I~vWd~  280 (362)
T KOG0294|consen  275 IKVWDI  280 (362)
T ss_pred             EEEEEc
Confidence            544443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.08  E-value=0.43  Score=43.30  Aligned_cols=133  Identities=18%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc---------CCCC-CeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART---------SPNR-NHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~---------~~~~-~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      .-.+..++.|++.++++.-+|.+..|+. +.+....+-..         .|.. ..-......+++-++|.++.+ ..+.
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~  255 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQ  255 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-cchh
Confidence            3456678899999999998888887764 44433332211         1221 101111222344456666654 3344


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-C-CCCCCceEEcCCCCEEEEEe
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l-~g~Pdgia~d~dG~l~va~~  173 (268)
                      .+..+...-.-++|.|+|++| .+.+....-..||+..+.    +.+.+ . .....++++.+||.|..+..
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             hhhcchhhheeeeecCCCcee-eecccccchhhcccccch----hhHhhcccccccceeEecCCCceeeccC
Confidence            455566667789999999866 576777776668876421    11111 1 11366899999999866543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.07  E-value=0.19  Score=46.63  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEe
Q 024436           75 PNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQ  152 (268)
Q Consensus        75 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~  152 (268)
                      |++..+.-....+..-.||.+|..++....+......--.-.|+|||+.|+++....+  .|+++++++...   +.+..
T Consensus       247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~  323 (425)
T COG0823         247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTF  323 (425)
T ss_pred             CCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeec
Confidence            4444443333444556799999997776665555444446789999999887654333  788888887432   22222


Q ss_pred             CCCCCCceEEcCCCCEEEEEe
Q 024436          153 LPGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       153 l~g~Pdgia~d~dG~l~va~~  173 (268)
                      -.+....-.+.+||..++-+.
T Consensus       324 ~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         324 SGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCCCCcCccCCCCCCEEEEEe
Confidence            122344667889998766555

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.04  E-value=0.9  Score=39.52  Aligned_cols=143  Identities=14%  Similarity=0.198  Sum_probs=90.2

Q ss_pred             EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce---------EEEEEEcCCCCCeeEEEeecCCcceEEEEe
Q 024436           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR---------WLHFARTSPNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      .+..+.+..-..+.+.+|.+.++++..||++..|+.-. +.         |...-..+|.++++.-- .-+..-.||.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG-GLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG-GLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec-CcCceeEEEecc
Confidence            34456677889999999999999999999999998632 21         22222334555554321 112334677775


Q ss_pred             CC--CCe---EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC-CCCEEE
Q 024436           97 PA--TKQ---VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGFWV  170 (268)
Q Consensus        97 ~~--~~~---~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~-dG~l~v  170 (268)
                      .+  .+.   .+.+...-.+-....|-+|++ | ++.++.....-||+..++  ....|..-.|-.-.+.+.| +++.||
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-i-lT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-I-LTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCc-e-EecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEE
Confidence            33  122   233555666777889988874 4 578888999999998532  1233432223344566667 888888


Q ss_pred             EEec
Q 024436          171 GIHS  174 (268)
Q Consensus       171 a~~~  174 (268)
                      +..-
T Consensus       204 Sg~c  207 (343)
T KOG0286|consen  204 SGGC  207 (343)
T ss_pred             eccc
Confidence            6643

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=96.00  E-value=0.87  Score=39.04  Aligned_cols=186  Identities=17%  Similarity=0.232  Sum_probs=102.4

Q ss_pred             CcchhHHHHHHHHHHhhhhcCCCEEE------------EecCCC----CCcc--eEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436            2 NSSLSFIAKSIVIFLFINSSTQGVVQ------------YQIEGA----IGPE--SLAFDALGEGPYTGVSDGRIIKWHQD   63 (268)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------i~~~~~----~~P~--gia~~~dG~~l~~~~~~g~I~~~~~~   63 (268)
                      ++.+|+-+...+..+-.--++..+++            +|+...    .-|.  =-+-.|+...+.+....+.+...+.+
T Consensus         6 ~~~ls~a~~~~l~~~a~~~~tp~Ve~e~~~lv~a~~et~PVa~~~daADDPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLs   85 (364)
T COG4247           6 SKILSTAAGAALMKLALPTVTPTVETERPDLVDADNETIPVADQNDAADDPAIWVHATNPDKSLVITTVKKAGLRVYDLS   85 (364)
T ss_pred             cchhhHHHHHHHHHHhcCCccCcccccCcceeecCCCccccccCCcccCCcceEeccCCcCcceEEEeeccCCeEEEecC
Confidence            35667666666665555555554433            333311    1111  01224555656666666666667777


Q ss_pred             CCeEEEEEEcCCCC--------------CeeEEEe-ecC--CcceEEEEeCCCCeEEEeec-------CCCCcceEEEcc
Q 024436           64 QRRWLHFARTSPNR--------------NHISVIL-SGD--KTGRLMKYDPATKQVTVLLG-------NLSFPNGVALSE  119 (268)
Q Consensus        64 g~~~~~~~~~~~~~--------------~~~~~~~-~~~--~~g~v~~~d~~~~~~~~~~~-------~~~~pnGia~sp  119 (268)
                      |+.+..+.   +++              .-+.... +++  ..-.+|.+||+++.++.+.+       ....|.|+++-.
T Consensus        86 GkqLqs~~---~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyr  162 (364)
T COG4247          86 GKQLQSVN---PGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYR  162 (364)
T ss_pred             CCeeeecC---CCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEe
Confidence            77533221   111              1111111 222  23357899999877766543       356788998877


Q ss_pred             CCC----EEEEEecCCcEEEEEEccCC---CCCceeEEEe--CCCCCCceEEcCC-CCEEEEEecCCCcceeeeEeeC--
Q 024436          120 DGN----YILLAETTSCRILRYWLKTS---KAGTIEIVAQ--LPGFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFP--  187 (268)
Q Consensus       120 dg~----~lyva~~~~~~I~~~~~~~~---~~g~~~~~~~--l~g~Pdgia~d~d-G~l~va~~~~~~~~~~~v~~~~--  187 (268)
                      +.+    ++||+.. .+.|..|.+-.+   +.+. ..+.+  ++..-.|+..|.+ |.||++...-.      |++|.  
T Consensus       163 s~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~-k~vR~fk~~tQTEG~VaDdEtG~LYIaeEdva------iWK~~Ae  234 (364)
T COG4247         163 SPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGT-KLVRQFKIPTQTEGMVADDETGFLYIAEEDVA------IWKYEAE  234 (364)
T ss_pred             cCCcCcEEEEEecC-CCceeEEEEEecCCceEcc-eeeEeeecCCcccceeeccccceEEEeeccce------eeecccC
Confidence            644    4566654 488888887532   2221 12222  4556788888764 78999987654      44542  


Q ss_pred             ----ccceeeeeccc
Q 024436          188 ----WIGNVLIKLPI  198 (268)
Q Consensus       188 ----~~g~~l~~i~~  198 (268)
                          ..|+++.++..
T Consensus       235 p~~G~~g~~idr~~d  249 (364)
T COG4247         235 PNRGNTGRLIDRIKD  249 (364)
T ss_pred             CCCCCccchhhhhcC
Confidence                34566666653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.97  E-value=0.065  Score=49.58  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=44.7

Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc---eEEcCCC-CEEEEEecCC
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRG-GFWVGIHSRR  176 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg---ia~d~dG-~l~va~~~~~  176 (268)
                      .-++++||.+ |-++-...+.|.+||+.+     ...+.++.|.+||   |.+..|| +||.+...+.
T Consensus       513 yALa~spDak-vcFsccsdGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  513 YALAISPDAK-VCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             hhhhcCCccc-eeeeeccCCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            4689999998 556777889999999975     3455668888988   4566789 6999877664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.96  E-value=0.13  Score=49.85  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=66.4

Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ..+++-+||++..+  +.-.+..+..|-..|+|.|-.+.-|++.+..++|..|.+.+.+   ...+.++..+-..+++.|
T Consensus       387 SMDKTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~P  461 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSP  461 (712)
T ss_pred             cccccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhheeEEecc
Confidence            34566677776543  4444556777888999999888899999999999999987522   233445666788999999


Q ss_pred             CCC-EEEEEecCCCcc
Q 024436          165 RGG-FWVGIHSRRKGI  179 (268)
Q Consensus       165 dG~-l~va~~~~~~~~  179 (268)
                      ||+ ..|+.+.+.|++
T Consensus       462 dGk~avIGt~~G~C~f  477 (712)
T KOG0283|consen  462 DGKGAVIGTFNGYCRF  477 (712)
T ss_pred             CCceEEEEEeccEEEE
Confidence            997 577888777643

>PTZ00421 coronin; Provisional

Probab=95.94  E-value=0.26  Score=46.66  Aligned_cols=109  Identities=14%  Similarity=0.058  Sum_probs=66.5

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCC----------CCCeeEEE-eecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSP----------NRNHISVI-LSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~----------~~~~~~~~-~~~~~~g~v~~~d~~~~~  101 (268)
                      ..-.+++++|+|++++++..|+.|..|++. ++....+.....          +...+... +.....+.|..||..+..
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            357889999999999999999999999975 333222221111          11111111 112235678888876432


Q ss_pred             E-EEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          102 V-TVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       102 ~-~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      . ....  +......-..+++|++.||++....+.|..|++..+
T Consensus       249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            1 1111  111122234689999988888767889999999753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.92  E-value=1.2  Score=40.14  Aligned_cols=93  Identities=13%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             CCEEEEEeCCCeEEEEeC-CCCe-EEEEEEcCC--CCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCCcc-eEEE
Q 024436           45 GEGPYTGVSDGRIIKWHQ-DQRR-WLHFARTSP--NRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN-GVAL  117 (268)
Q Consensus        45 G~~l~~~~~~g~I~~~~~-~g~~-~~~~~~~~~--~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn-Gia~  117 (268)
                      ++.+|+...+|.++.+++ +|+. |.. .....  ..+..  ..++....++.++.+|.++|++.--........ ..++
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRV-DLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeee-cCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            556888888899999995 6663 321 11000  00000  011223456899999998887532111101111 1122


Q ss_pred             ccCCCEEEEEecCCcEEEEEEccC
Q 024436          118 SEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       118 spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      . + +.+|+.. ..++|+.++.+.
T Consensus       144 ~-~-~~v~v~~-~~g~l~a~d~~t  164 (377)
T TIGR03300       144 A-N-GLVVVRT-NDGRLTALDAAT  164 (377)
T ss_pred             E-C-CEEEEEC-CCCeEEEEEcCC
Confidence            2 3 3677754 567899999864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=95.90  E-value=0.75  Score=42.81  Aligned_cols=146  Identities=17%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC----CCCeeEEEeecCCcceEEEEeCCCCeEEEeecC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP----NRNHISVILSGDKTGRLMKYDPATKQVTVLLGN  108 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  108 (268)
                      ...-.|+|..|+.+++.+...++.+..|+...-.|+.....+.    -.+.. .+..+..+|+.+++|.++.....+...
T Consensus       368 ~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d  446 (626)
T KOG2106|consen  368 GDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD  446 (626)
T ss_pred             ccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec
Confidence            3478999999999989888888888888833223433221110    00111 223445789999999987554444444


Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC-CCceEEcCCCCEEEEEecCCCcceee
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF-PDNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~-Pdgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      -..-+-+.++|||.+|-|. +.++.|+.|.++.... ....+....|. -.-+.+.+|++++++....- .++-|
T Consensus       447 ~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~-eiLyW  518 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY-EILYW  518 (626)
T ss_pred             CCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCce-EEEEE
Confidence            4445789999999866554 6778999998873210 01111112222 24567778888877766543 34444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=95.89  E-value=0.29  Score=43.20  Aligned_cols=127  Identities=19%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             CcceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-CCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g~Pdgia~d~d  165 (268)
                      +.+.|..++..-.+..- +.++...-..+.+||||++|..+....-||.+|.+.+.+    .....-| ....|+++.+|
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccCceeEEECCC
Confidence            44556555543223322 223333335689999999999998899999999987521    1222211 23479999999


Q ss_pred             CCEEEEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEc
Q 024436          166 GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE  232 (268)
Q Consensus       166 G~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  232 (268)
                      |++..-.....+  .+|++.+. ..-.+++...++...            -..+.-+|||..+.+++.
T Consensus       145 g~f~ai~sRrDC--kdyv~i~~c~~W~ll~~f~~dT~D------------ltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  145 GQFCAILSRRDC--KDYVQISSCKAWILLKEFKLDTID------------LTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             CceeeeeecccH--HHHHHHHhhHHHHHHHhcCCCccc------------ccCceECCCCcEEEEecc
Confidence            987554444333  34444431 233344444443211            123555566666666554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.87  E-value=1  Score=38.67  Aligned_cols=141  Identities=15%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCC---------CCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPN---------RNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~---------~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .+.-..+++..+|..+.++.-+..+..++.++.. .......+-.         +..-..+......-.|.++|-..++.
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~   99 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC   99 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence            3567889999999999988877777666544321 1111100000         00000111222333555566555555


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      ......-..-+-|.++|||+++.+.+ ..++|.-++....+.-..+.   .+-....+++.-+++++....+.++
T Consensus       100 ~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~~---~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen  100 TARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEEQ---FKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehhc---ccceeeeeeecCCCCEEEEecCCce
Confidence            44443333445799999999887766 45678777765322111111   2234567888877889888888665

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.80  E-value=0.64  Score=40.93  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      ..|.-++|+||-+.+.|+--..+++++|.+.
T Consensus       133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen  133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             CCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            3688999999999898888788899999876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.77  E-value=0.2  Score=46.28  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEe-ecCCcceEEEEeCCCCe
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVIL-SGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~-~~~~~g~v~~~d~~~~~  101 (268)
                      +..-+.+.+++||+.++++++...++.++-+........          ..+++..|+.=.+ ++--+..|..+|.++++
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            567889999999998888888899998886532211110          1234444432111 12223456667777677


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEe
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAE  128 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~  128 (268)
                      +-.+...-.+-..-||+|||++||+-.
T Consensus       481 iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         481 IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEEecCCcccccCcccCCCCcEEEEEe
Confidence            766655555555679999999999853

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.64  E-value=0.057  Score=32.78  Aligned_cols=39  Identities=21%  Similarity=0.057  Sum_probs=30.3

Q ss_pred             EEEEEecCCc-EEEEEEccCCCCCceeEEEe-CCCCCCceEEcC
Q 024436          123 YILLAETTSC-RILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP  164 (268)
Q Consensus       123 ~lyva~~~~~-~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~  164 (268)
                      .||.+|...+ +|.+-+++|..   .+++.. .-..|.||++|+
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            6999999999 99999999843   455443 224799999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.61  E-value=0.48  Score=42.89  Aligned_cols=173  Identities=19%  Similarity=0.232  Sum_probs=98.3

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE----------EEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL----------HFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      .-..+...|+|+.++++...|....|+..+-.++          .....+.++.|+   ++++..|.|-.+++.=..++.
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wm---iSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWM---ISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEE---EEcCCCceEEecccchhhhHH
Confidence            3456788999999999998899888765321000          001112222232   366777888888886322332


Q ss_pred             eecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCCCCEEEEEecCCCcceee
Q 024436          105 LLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       105 ~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      .... -..-.+++|+|.. .-|++-+..++|..|+..-.   ..+.....+| .+..+.+.|.-.|.++.....  ++++
T Consensus       175 ~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKl  248 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKL  248 (464)
T ss_pred             hhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCccceeEEccCCc--eeEe
Confidence            2221 1345689999965 58899999999999987532   1222223233 477888888766555443332  1211


Q ss_pred             eEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436          183 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  230 (268)
Q Consensus       183 v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  230 (268)
                        -.+++|+-++.+..           .+.. .+.++++++|..+.+.
T Consensus       249 --WDprSg~cl~tlh~-----------HKnt-Vl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  249 --WDPRSGSCLATLHG-----------HKNT-VLAVKFNPNGNWLLTG  282 (464)
T ss_pred             --ecCCCcchhhhhhh-----------ccce-EEEEEEcCCCCeeEEc
Confidence              13455554444322           2232 4556666666554444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.59  E-value=0.26  Score=44.62  Aligned_cols=114  Identities=19%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE-------EcCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFA-------RTSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~-------~~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      ..+.++-+....+.+-+.-|||..++++..|+.|..++.||+.   |....       ..++++.++..+.. ++  .+.
T Consensus       303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~--~i~  379 (519)
T KOG0293|consen  303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DK--KIR  379 (519)
T ss_pred             hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-cc--cee
Confidence            3444444423568888999999999999999999999999873   33221       12344455544432 22  333


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .++..+..-+-+...-..-..+.+|.||+ +...+-..+.|.-||+..
T Consensus       380 l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  380 LYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             eechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch
Confidence            33333211111333333345789999998 555667789999999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=95.52  E-value=0.44  Score=47.11  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=83.1

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      .+.++++.+|++++.+..|-.|-.++.+.. ....+.         ...|.++++...   ..+|.|+.||.+++.+...
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs---s~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS---SCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE---ecCceEEEEEcccchhhhh
Confidence            467899999998888877777766654321 111111         112444554432   5788999999887765443


Q ss_pred             ecCCC---------CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEec
Q 024436          106 LGNLS---------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       106 ~~~~~---------~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~  174 (268)
                      ..++.         .-+-++|+|+|..+.+. ...+.|.+|+.++....  -.+..  ....-.-++++|.|.++.|..-
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCceeh--eeecccccccceEEEEEcCCCcEEeeecc
Confidence            33322         22458999997666655 46689999999874210  01111  1122446788898877766666


Q ss_pred             CCCcce
Q 024436          175 RRKGIS  180 (268)
Q Consensus       175 ~~~~~~  180 (268)
                      .+ .++
T Consensus       253 ~g-~I~  257 (933)
T KOG1274|consen  253 DG-QIL  257 (933)
T ss_pred             CC-cEE
Confidence            55 444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.43  E-value=0.64  Score=45.21  Aligned_cols=143  Identities=15%  Similarity=0.169  Sum_probs=88.3

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--E--------EEcCCCCCeeEEEeecCCcceEEE
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH--F--------ARTSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~--~--------~~~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      -+++.++.  ..-++.++|||+++.++.-|..|..+-.|.-.+..  +        ...+++.... .....+++-.||-
T Consensus       502 ~rtLel~d--dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkli-vTgSADKnVKiWG  578 (888)
T KOG0306|consen  502 TRTLELED--DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLI-VTGSADKNVKIWG  578 (888)
T ss_pred             ceEEeccc--cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeE-EeccCCCceEEec
Confidence            35666665  67889999999999999999888877766432111  1        1223332211 1223344455555


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEE
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVG  171 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va  171 (268)
                      +|-. .-.+.+..+...-..+.|-|+. ++|++..-.+.|..||-+  +   .+.+..++|   -...+++.|+|.+.|+
T Consensus       579 LdFG-DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~--k---Fe~iq~L~~H~~ev~cLav~~~G~~vvs  651 (888)
T KOG0306|consen  579 LDFG-DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGE--K---FEEIQKLDGHHSEVWCLAVSPNGSFVVS  651 (888)
T ss_pred             cccc-hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechh--h---hhhheeeccchheeeeeEEcCCCCeEEe
Confidence            5543 1122233333334579999976 688898888999998743  2   222333332   3678899999998887


Q ss_pred             EecCCC
Q 024436          172 IHSRRK  177 (268)
Q Consensus       172 ~~~~~~  177 (268)
                      ....++
T Consensus       652 ~shD~s  657 (888)
T KOG0306|consen  652 SSHDKS  657 (888)
T ss_pred             ccCCce
Confidence            766554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=95.41  E-value=1.4  Score=38.86  Aligned_cols=106  Identities=9%  Similarity=0.040  Sum_probs=60.7

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCC---------CCeE----EEEEEcCCCCCeeE--------------EEee
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQD---------QRRW----LHFARTSPNRNHIS--------------VILS   85 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~---------g~~~----~~~~~~~~~~~~~~--------------~~~~   85 (268)
                      .+.-.|.-.+|||.-+.+...+..+..|+..         +...    ..+-...+.--|..              .+..
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            3455677889999988887777776666421         1100    00000011100000              0111


Q ss_pred             cCCcceEEEEeCCCCeEEEe------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           86 GDKTGRLMKYDPATKQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      .....-|..+|.-+|+.+.-      .+....+..++|+|||..||.-  .+++|.+|++.
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~  187 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTS  187 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeecc
Confidence            12334466677766766543      2445667899999999988854  56899999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=95.35  E-value=0.46  Score=42.88  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcc
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  113 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn  113 (268)
                      +.-+++.|+|+|+++.++.++|.|+.|-....... .          .+. +...+...|.+      .+.+.....-+.
T Consensus        66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~----------~d~-e~~~~ke~w~v------~k~lr~h~~diy  127 (434)
T KOG1009|consen   66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-D----------ADT-EADLNKEKWVV------KKVLRGHRDDIY  127 (434)
T ss_pred             ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-c----------ccc-hhhhCccceEE------EEEecccccchh
Confidence            45677788888887777777777776654321110 0          000 00000111110      111223445678


Q ss_pred             eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEecC
Q 024436          114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      .++|+||+. ..++.+..+.++-||+..+.   ..... +-..++.|+++||.+.........
T Consensus       128 dL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  128 DLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             hhhccCCCc-eeeeeeccceEEEEEeccce---eEeeccccccccceeecchhhhhhhhhccC
Confidence            999999996 55777888999999987432   22221 224689999999987655554443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.34  E-value=0.29  Score=43.67  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      .+-+|.... ..-..+||+++|.++.++.+.|+|.|+-  ++|..                         ++.+...+. 
T Consensus       165 ~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-------------------------l~eFRRG~~-  217 (391)
T KOG2110|consen  165 PVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-------------------------LYEFRRGTY-  217 (391)
T ss_pred             eeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-------------------------eeeeeCCce-
Confidence            444555443 2456788899999888888888887763  34433                         222322111 


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .       ..-..|+|+||+++| .+.+.+..|+.|.++.
T Consensus       218 ~-------~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  218 P-------VSIYSLSFSPDSQFL-AASSNTETVHIFKLEK  249 (391)
T ss_pred             e-------eEEEEEEECCCCCeE-EEecCCCeEEEEEecc
Confidence            1       112369999999855 5567889999999874

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.29  E-value=0.33  Score=45.88  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             CCCCcceEEEccCCCEEEEE-ecCCc-------EEEEEEccCCCCCceeEEEeCCC--CCCceEEcCCCC-EEEEEecCC
Q 024436          108 NLSFPNGVALSEDGNYILLA-ETTSC-------RILRYWLKTSKAGTIEIVAQLPG--FPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva-~~~~~-------~I~~~~~~~~~~g~~~~~~~l~g--~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      -+..|-+|+|+|.|+ |+++ |....       -++.+...++..++...|...|.  --.|.++.|||+ ++|+....+
T Consensus       498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQHPG  576 (616)
T COG3211         498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQHPG  576 (616)
T ss_pred             cccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecCCC
Confidence            366799999999997 6665 44332       12222223344555666654332  356899999995 888876554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.28  E-value=0.35  Score=43.17  Aligned_cols=83  Identities=22%  Similarity=0.531  Sum_probs=51.6

Q ss_pred             ceEEEcc-CCCEEEEEecCC----cEEEEEEccC--CCCCceeEEE--eC---CC--------CCCceEEcCCCCEEEEE
Q 024436          113 NGVALSE-DGNYILLAETTS----CRILRYWLKT--SKAGTIEIVA--QL---PG--------FPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       113 nGia~sp-dg~~lyva~~~~----~~I~~~~~~~--~~~g~~~~~~--~l---~g--------~Pdgia~d~dG~l~va~  172 (268)
                      .||+++| +++++-|+|...    .+++.++++.  +..+......  .+   .|        -+.||++.++|.+|++.
T Consensus        23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~  102 (326)
T PF13449_consen   23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISS  102 (326)
T ss_pred             eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEe
Confidence            5899985 444444455433    2377777653  1112122111  11   12        24599998899999999


Q ss_pred             ecC------CCcceeeeEeeCccceeeeeccccc
Q 024436          173 HSR------RKGISKLVLSFPWIGNVLIKLPIDI  200 (268)
Q Consensus       173 ~~~------~~~~~~~v~~~~~~g~~l~~i~~~~  200 (268)
                      ...      ..     |.++...|+++.+++.|.
T Consensus       103 E~~~~~~~~p~-----I~~~~~~G~~~~~~~vP~  131 (326)
T PF13449_consen  103 EGGRTGGIPPR-----IRRFDLDGRVIRRFPVPA  131 (326)
T ss_pred             CCccCCCCCCE-----EEEECCCCcccceEcccc
Confidence            877      53     888888899988886663

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.17  E-value=1.3  Score=43.69  Aligned_cols=177  Identities=16%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEE----EcCCCCC----ee-EEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFA----RTSPNRN----HI-SVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~-~~~~----~~~~~~~----~~-~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....++++++=|++.+.+...|.|-+++...... ..|.    ..++-..    .. ..+.+....|-+..+|-+++...
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            4577889999999999999999999998754321 1221    0000000    00 12334455677777887744433


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE-EEecCCCcceee
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKL  182 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v-a~~~~~~~~~~~  182 (268)
                      .-..-...+++|.....-. +++.....-.|..+|....+.  .+.|..-...-..+++.+||+..+ |+....      
T Consensus       529 ~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~t------  599 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDST------  599 (910)
T ss_pred             eeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCc------
Confidence            3344445678888887765 666666777889998753211  122221123567899999998555 444443      


Q ss_pred             eEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEc
Q 024436          183 VLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE  232 (268)
Q Consensus       183 v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  232 (268)
                      |..+ -+++.++..+.++..             ..-+.++|+|..+.+.+-
T Consensus       600 Ir~wDlpt~~lID~~~vd~~-------------~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  600 IRTWDLPTGTLIDGLLVDSP-------------CTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             EEEEeccCcceeeeEecCCc-------------ceeeEECCCCCEEEEEEe
Confidence            3333 267877776655422             245778888888887764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.13  E-value=2  Score=38.44  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             eEEEEeCCCCeEEEeecC-CCCcce-EEEccCCCEEEEE---ecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           91 RLMKYDPATKQVTVLLGN-LSFPNG-VALSEDGNYILLA---ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~-~~~pnG-ia~spdg~~lyva---~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      .||.+|.++-++-.-.+. -..|+| .|+++....-|++   .+..+.|+.|+...  +.....+.--.|--..++++++
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~~~lAalafs~~  184 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHKGPLAALAFSPD  184 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecCCceeEEEECCC
Confidence            478888775443222222 245666 4777765423333   45668999999764  1112222111244568999999


Q ss_pred             CCEEEEEecCCC
Q 024436          166 GGFWVGIHSRRK  177 (268)
Q Consensus       166 G~l~va~~~~~~  177 (268)
                      |++..+....++
T Consensus       185 G~llATASeKGT  196 (391)
T KOG2110|consen  185 GTLLATASEKGT  196 (391)
T ss_pred             CCEEEEeccCce
Confidence            999887777764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.11  E-value=4.1  Score=40.88  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=82.0

Q ss_pred             CCcceEEECC-CCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQ-RRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQ-  101 (268)
Q Consensus        34 ~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  101 (268)
                      ..-.+++++| ++++++++..|+.|..|+... ..+..+...         .+++.+   +..+..++.|+.||..+.+ 
T Consensus       576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~---latgs~dg~I~iwD~~~~~~  652 (793)
T PLN00181        576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRS---LAFGSADHKVYYYDLRNPKL  652 (793)
T ss_pred             CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCE---EEEEeCCCeEEEEECCCCCc
Confidence            3467899996 788889999999999998753 322222110         111222   2244567889999886543 


Q ss_pred             -EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-ceeEEEeCC---CCCCceEEcCCCCEEEEEecCC
Q 024436          102 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-TIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 -~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~~  176 (268)
                       ...+......-+.+.|. +++.| ++-+..+.|..|++.....+ ....+..+.   .....++++++|+++++....+
T Consensus       653 ~~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        653 PLCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             cceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence             22333333345678887 66644 56667889999998632110 011122222   2345688999988766665544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=0.69  Score=45.92  Aligned_cols=155  Identities=12%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             hhhcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------------Ec---------
Q 024436           18 INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------------RT---------   73 (268)
Q Consensus        18 ~~~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------------~~---------   73 (268)
                      -|-++++|.++.=. ...-.+-.|.|.-++++++.-|..|..||-.|-+-...+               ..         
T Consensus       121 Nwqsr~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             eccCCceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            46677777766533 457778889998888888888888877775442100000               00         


Q ss_pred             ----CCCC--CeeE------EEe--ecCCcceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCEEEEEecCCcEEEEE
Q 024436           74 ----SPNR--NHIS------VIL--SGDKTGRLMKYDPATKQVTV--LLGNLSFPNGVALSEDGNYILLAETTSCRILRY  137 (268)
Q Consensus        74 ----~~~~--~~~~------~~~--~~~~~g~v~~~d~~~~~~~~--~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~  137 (268)
                          +-+|  +|..      .++  .++..-.+||++.. +.+++  .-++...-.++-|.|..+ |.++++....|.+|
T Consensus       200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVW  277 (1202)
T ss_pred             eeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEE
Confidence                0011  2211      122  23344578888754 54443  345556667999999875 77899999999999


Q ss_pred             EccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436          138 WLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       138 ~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      |++..  .....|.+-...-.-++..|..|||.|.+.++.
T Consensus       278 Dm~kR--t~v~tfrrendRFW~laahP~lNLfAAgHDsGm  315 (1202)
T KOG0292|consen  278 DMTKR--TSVQTFRRENDRFWILAAHPELNLFAAGHDSGM  315 (1202)
T ss_pred             ecccc--cceeeeeccCCeEEEEEecCCcceeeeecCCce
Confidence            99742  124445443344566888889999999888873

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.03  E-value=2  Score=36.88  Aligned_cols=167  Identities=12%  Similarity=0.104  Sum_probs=90.4

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-----E--Ec-CCCCCeeEEEeecCCcceEE
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF-----A--RT-SPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~-----~--~~-~~~~~~~~~~~~~~~~g~v~   93 (268)
                      +|+++.+...+  .-.-++..|+|+...++..++.|.-++.........     .  .. -...+.+  ++...+.|.|-
T Consensus        97 ~k~~~~i~~~~--eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~--Fflt~GlG~v~  172 (313)
T KOG1407|consen   97 GKCTARIETKG--ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL--FFLTNGLGCVE  172 (313)
T ss_pred             CcEEEEeeccC--cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE--EEEecCCceEE
Confidence            34444444443  345678899999888888888888887543321110     0  00 0011101  11112334433


Q ss_pred             EEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEE
Q 024436           94 KYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus        94 ~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~  172 (268)
                      .+.-..-+ +..+..+-..--.|.|+|+|+++- +.+....+.-||++.  +--.+.|..+.--.+-+.+.-||+++.+.
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA-~GsADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA-TGSADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEe-eccccceeeccChhH--hhhheeeccccCceEEEEeccCcceeecc
Confidence            33222111 111222222233689999998653 455566778888863  22234555554224788999999988777


Q ss_pred             ecCCCcceeeeEeeCccceeeeecccc
Q 024436          173 HSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       173 ~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      ...+.  +++  .+..+|..+..|+..
T Consensus       250 SEDh~--IDI--A~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  250 SEDHF--IDI--AEVETGDRVWEIPCE  272 (313)
T ss_pred             Cccce--EEe--EecccCCeEEEeecc
Confidence            66652  322  356788888888764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.85  E-value=0.5  Score=42.79  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=74.9

Q ss_pred             cCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--------------EcCCCCCeeEEEeec
Q 024436           21 STQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA--------------RTSPNRNHISVILSG   86 (268)
Q Consensus        21 ~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~   86 (268)
                      +++..+.+++++  .-.++...++|.-+.+...|+.+-.++..+..+....              ..+|++.|+.   ++
T Consensus       331 s~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva---AG  405 (459)
T KOG0288|consen  331 SADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA---AG  405 (459)
T ss_pred             CCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee---ec
Confidence            455778888887  7888999999998888777788777776655333221              1245656664   56


Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEec
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSF---PNGVALSEDGNYILLAET  129 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~---pnGia~spdg~~lyva~~  129 (268)
                      ..+|+||.|+..+++++.....-..   -+.++|+|-|+.|.-++.
T Consensus       406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            7889999999999998876544332   367899999988876654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=3  Score=41.68  Aligned_cols=102  Identities=16%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc-----------CCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART-----------SPNRNHISVILSGDKTGRLMKYDPATKQ-V  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~  102 (268)
                      .-+|++|.|++.+++++-+|-+|-.|+-+.++ ..|...           ...-+|+.. .+++.+-+||-+  .+++ +
T Consensus        53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-clftL~GHlDYVRt~~FHheyPWIlS-ASDDQTIrIWNw--qsr~~i  128 (1202)
T KOG0292|consen   53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-CLFTLLGHLDYVRTVFFHHEYPWILS-ASDDQTIRIWNW--QSRKCI  128 (1202)
T ss_pred             ccceeeecCCCCeEEecCCccEEEEEecccce-ehhhhccccceeEEeeccCCCceEEE-ccCCCeEEEEec--cCCceE
Confidence            57899999999977777667777666655432 111100           011123321 133344445444  4444 4


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      -.+.++-++--.-+|.|-++ +.|+.+....|.+||+.|
T Consensus       129 avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  129 AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence            55566677788899999776 889999999999999986

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.78  E-value=3.2  Score=37.89  Aligned_cols=203  Identities=15%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             CCEEEEEeCCCeEEEEeC-CCC-eEEEEEEcC-CCCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCCc-------
Q 024436           45 GEGPYTGVSDGRIIKWHQ-DQR-RWLHFARTS-PNRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSFP-------  112 (268)
Q Consensus        45 G~~l~~~~~~g~I~~~~~-~g~-~~~~~~~~~-~~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-------  112 (268)
                      ++.+|+...+|.++.+++ +|+ .|..-.... ...+.+  ..++.....+.|+.+|+++|+..=-... ..|       
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL-DVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC-CCCcccccCC
Confidence            344666677888988886 454 232211000 000100  0112234578999999998875321111 111       


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCC-------------ceEEcCCCCEEEEEecCCCc
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPD-------------NIKRSPRGGFWVGIHSRRKG  178 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pd-------------gia~d~dG~l~va~~~~~~~  178 (268)
                      ...++. ++ .+|+.. .+++++.++.++++.    .+.. . +.|.             ...+ .+|.+|++...+.. 
T Consensus       199 ~sP~v~-~~-~v~~~~-~~g~v~a~d~~~G~~----~W~~~~-~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l-  268 (394)
T PRK11138        199 SAPATA-FG-GAIVGG-DNGRVSAVLMEQGQL----IWQQRI-SQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNL-  268 (394)
T ss_pred             CCCEEE-CC-EEEEEc-CCCEEEEEEccCChh----hheecc-ccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeE-
Confidence            112232 33 577654 567888888764321    1110 1 0111             1112 25678887765431 


Q ss_pred             ceeeeEeeCccceeeeeccccce-eee----eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436          179 ISKLVLSFPWIGNVLIKLPIDIV-KIH----SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW  252 (268)
Q Consensus       179 ~~~~v~~~~~~g~~l~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly  252 (268)
                          ......+|+.+.+.+.+.. .+.    .++- .... +.++.++. +|+.+.......+..   .+..+..+++||
T Consensus       269 ----~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~-~~~~-g~l~ald~~tG~~~W~~~~~~~~~---~~sp~v~~g~l~  339 (394)
T PRK11138        269 ----VALDLRSGQIVWKREYGSVNDFAVDGGRIYL-VDQN-DRVYALDTRGGVELWSQSDLLHRL---LTAPVLYNGYLV  339 (394)
T ss_pred             ----EEEECCCCCEEEeecCCCccCcEEECCEEEE-EcCC-CeEEEEECCCCcEEEcccccCCCc---ccCCEEECCEEE
Confidence                2334567776655443211 000    0000 0112 34555555 355444332221211   223345689999


Q ss_pred             EeeCCCCeEEEEeCCC
Q 024436          253 IGSVNMPYAGLYNYSS  268 (268)
Q Consensus       253 v~s~~~~~v~~~~~~~  268 (268)
                      +++..+ +|..++.++
T Consensus       340 v~~~~G-~l~~ld~~t  354 (394)
T PRK11138        340 VGDSEG-YLHWINRED  354 (394)
T ss_pred             EEeCCC-EEEEEECCC
Confidence            987654 676777653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.67  E-value=3.2  Score=37.44  Aligned_cols=202  Identities=17%  Similarity=0.248  Sum_probs=92.6

Q ss_pred             CCEEEEEeCCCeEEEEeC-CCCe-EEEEEEcC-CCCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCC------cc
Q 024436           45 GEGPYTGVSDGRIIKWHQ-DQRR-WLHFARTS-PNRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSF------PN  113 (268)
Q Consensus        45 G~~l~~~~~~g~I~~~~~-~g~~-~~~~~~~~-~~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~------pn  113 (268)
                      ++.+|+...+|.++.++. +|+. |..-.... ...+..  ..++.....+.|+.+|+++|+..--......      ..
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~  184 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA  184 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence            445666667788888876 4542 22110000 000000  0122234578899999988865321111000      01


Q ss_pred             eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCC-------------ceEEcCCCCEEEEEecCCCcc
Q 024436          114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPD-------------NIKRSPRGGFWVGIHSRRKGI  179 (268)
Q Consensus       114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pd-------------gia~d~dG~l~va~~~~~~~~  179 (268)
                      ..++. ++ .+|+. ...++++.+++..++    ..+.. .. .|.             ...+ .++.+|++...+.   
T Consensus       185 sp~~~-~~-~v~~~-~~~g~v~ald~~tG~----~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~---  252 (377)
T TIGR03300       185 SPVIA-DG-GVLVG-FAGGKLVALDLQTGQ----PLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGR---  252 (377)
T ss_pred             CCEEE-CC-EEEEE-CCCCEEEEEEccCCC----Eeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcCCE---
Confidence            12232 33 56655 356788999886432    11211 10 010             1122 2567888776553   


Q ss_pred             eeeeEee-Cccceeeeeccccce-eee----eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436          180 SKLVLSF-PWIGNVLIKLPIDIV-KIH----SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW  252 (268)
Q Consensus       180 ~~~v~~~-~~~g~~l~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly  252 (268)
                         +..+ ..+|+.+...+.+.. .+.    .++- .... +.++.+|. +|+.+.......+...   +..+..+++||
T Consensus       253 ---l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv-~~~~-G~l~~~d~~tG~~~W~~~~~~~~~~---ssp~i~g~~l~  324 (377)
T TIGR03300       253 ---VAALDLRSGRVLWKRDASSYQGPAVDDNRLYV-TDAD-GVVVALDRRSGSELWKNDELKYRQL---TAPAVVGGYLV  324 (377)
T ss_pred             ---EEEEECCCCcEEEeeccCCccCceEeCCEEEE-ECCC-CeEEEEECCCCcEEEccccccCCcc---ccCEEECCEEE
Confidence               3333 346776655442210 000    0010 1122 44555555 3665544422112211   22234678899


Q ss_pred             EeeCCCCeEEEEeCC
Q 024436          253 IGSVNMPYAGLYNYS  267 (268)
Q Consensus       253 v~s~~~~~v~~~~~~  267 (268)
                      +++.. ..|..++.+
T Consensus       325 ~~~~~-G~l~~~d~~  338 (377)
T TIGR03300       325 VGDFE-GYLHWLSRE  338 (377)
T ss_pred             EEeCC-CEEEEEECC
Confidence            88754 456666654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.66  E-value=4  Score=38.53  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             eecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe-----------------cCCcEEEEEEccC
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE-----------------TTSCRILRYWLKT  141 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~-----------------~~~~~I~~~~~~~  141 (268)
                      +.....|.++.+|.++|+..=-.+. . -.+++.+|  +.+|+..                 ...++|+.++..+
T Consensus       305 ~~g~~~G~l~ald~~tG~~~W~~~~-~-~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         305 VHAPKNGFFYVLDRTTGKLISARPE-V-EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             EEECCCceEEEEECCCCcEeeEeEe-e-ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence            3445678999999998865321110 0 23466666  3688742                 1245777777764

The alignment model contains an 8-bladed beta-propeller.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=94.65  E-value=1.5  Score=37.50  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcC
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP  164 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~  164 (268)
                      ...+.|..+|-.+++...-..--..++.+.+++||+.|-+++  ...|.-|+.+.     ...+..  +|-....-.+.|
T Consensus       162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P  234 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--GSSVKFWDAKS-----FGLLKSYKMPCNVESASLHP  234 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--CceeEEecccc-----ccceeeccCccccccccccC
Confidence            445566667777676555444446678999999998666554  46777787753     223322  332233345678


Q ss_pred             CCCEEEEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEE
Q 024436          165 RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI  229 (268)
Q Consensus       165 dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  229 (268)
                      +-++|||..... +    +.+|. .+|+-+.....+         -..|  ...++++|+|++..+
T Consensus       235 ~k~~fVaGged~-~----~~kfDy~TgeEi~~~nkg---------h~gp--VhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  235 KKEFFVAGGEDF-K----VYKFDYNTGEEIGSYNKG---------HFGP--VHCVRFSPDGELYAS  284 (334)
T ss_pred             CCceEEecCcce-E----EEEEeccCCceeeecccC---------CCCc--eEEEEECCCCceeec
Confidence            878999877654 3    44444 244443332111         0112  456777777766554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=94.49  E-value=3.2  Score=36.65  Aligned_cols=139  Identities=19%  Similarity=0.222  Sum_probs=81.4

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEE------------------------------cCCC------
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFAR------------------------------TSPN------   76 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~------------------------------~~~~------   76 (268)
                      ..-.+++.++||+.++++..|..|..|+. +|.....+-.                              .++.      
T Consensus        66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp  145 (405)
T KOG1273|consen   66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP  145 (405)
T ss_pred             cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence            34578999999999999999999888874 4432111100                              0100      


Q ss_pred             ----C--C----------eeEEEeecCCcceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436           77 ----R--N----------HISVILSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYW  138 (268)
Q Consensus        77 ----~--~----------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~  138 (268)
                          .  +          ...-+..+...|.+..++..|-+...-..  ....-..|.++..|+ .++.++..+.|..|+
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYE  224 (405)
T ss_pred             CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEe
Confidence                0  0          01123466777888888887654432221  123345789999997 556788888888898


Q ss_pred             ccC----CCCCceeEE---EeC-CCCC-CceEEcCCCCEEEEEe
Q 024436          139 LKT----SKAGTIEIV---AQL-PGFP-DNIKRSPRGGFWVGIH  173 (268)
Q Consensus       139 ~~~----~~~g~~~~~---~~l-~g~P-dgia~d~dG~l~va~~  173 (268)
                      +..    +.-+..+..   .++ ...+ ..++++.+|.+.+|..
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            762    122222221   111 1122 4678888887666554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.48  E-value=2.9  Score=36.11  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC------------CCCCeeEEEeecCCcceEEEEeCCC
Q 024436           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS------------PNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      .-..-+.+|.+|.|+++.++.-|..+..+......+...+...            ..++|+. +.+.++.-=|+.+|-+ 
T Consensus        60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA-TCSRDKSVWiWe~ded-  137 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLA-TCSRDKSVWIWEIDED-  137 (312)
T ss_pred             chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEE-EeeCCCeEEEEEecCC-
Confidence            3356788999999998888888888887765433344444332            2333443 3333332334455533 


Q ss_pred             CeEE---EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEe
Q 024436          100 KQVT---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       100 ~~~~---~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~  173 (268)
                      .+.+   ++.++.+---++.|.|-.. |.++-+..+.|..|+-..+  ...+..+.+.   +..-.+++++.|.-++++.
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            4443   3445556667899999876 7778889999888876521  1233333342   2456788888886555555


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ...
T Consensus       215 dD~  217 (312)
T KOG0645|consen  215 DDG  217 (312)
T ss_pred             CCc
Confidence            443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=94.45  E-value=0.2  Score=46.78  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcC
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP  164 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~  164 (268)
                      -.++|||||++| |+...+.-|.+|....     +++++...   .....+++||
T Consensus       336 LCvcWSPDGKyI-vtGGEDDLVtVwSf~e-----rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 LCVCWSPDGKYI-VTGGEDDLVTVWSFEE-----RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEEcCCccEE-EecCCcceEEEEEecc-----ceEEEeccccccceeeEeecc
Confidence            479999999855 6777778888888753     56666532   3577888885

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.45  E-value=0.31  Score=42.92  Aligned_cols=102  Identities=21%  Similarity=0.323  Sum_probs=59.0

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeC-CCCe-
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDP-ATKQ-  101 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~-  101 (268)
                      .-.++.|+.|..++.++..||+|-.|.- .|..+..|..          .+.+..   .+++. ......|+.. ++|+ 
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~-sfD~tvRiHGlKSGK~  340 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSA-SFDQTVRIHGLKSGKC  340 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc---hhhcc-cccceEEEeccccchh
Confidence            4678899999999999988988765532 2221111110          000100   01111 1112222221 2232 


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ++.+.+.-.+-|...|++||.++. +.+..+.|.+|+...
T Consensus       341 LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  341 LKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKT  379 (508)
T ss_pred             HHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcc
Confidence            334456678899999999998774 667789999998764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=94.19  E-value=4.6  Score=37.26  Aligned_cols=218  Identities=14%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             HhhhhcCCCEE---EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEE
Q 024436           16 LFINSSTQGVV---QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFA---------RTSPNRNHISV   82 (268)
Q Consensus        16 ~~~~~~~~~~~---~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~   82 (268)
                      ++.|.=.|..+   .+-+|+  .-.+++.+|+|.+++.+.-.|.|+.|... |..+..+.         ..+.++.   .
T Consensus        63 l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs---~  137 (476)
T KOG0646|consen   63 LHVWEILKKDQVVQYIVLPG--PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS---H  137 (476)
T ss_pred             ccccccCchhhhhhhccccc--ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc---E
Confidence            44455444322   233443  35788999999977777788999999864 43211110         1122222   2


Q ss_pred             EeecCCcceEEEEeCCC-------CeE---EEeecCCCCcceEEEccCC--CEEEEEecCCcEEEEEEccCCCCCceeEE
Q 024436           83 ILSGDKTGRLMKYDPAT-------KQV---TVLLGNLSFPNGVALSEDG--NYILLAETTSCRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~-------~~~---~~~~~~~~~pnGia~spdg--~~lyva~~~~~~I~~~~~~~~~~g~~~~~  150 (268)
                      ++++.++|.|+.|+.-+       +.+   ..+.++--.-..+..++.|  .+|| +.+..+.+..|++..+.+   -.-
T Consensus       138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~L---Llt  213 (476)
T KOG0646|consen  138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVL---LLT  213 (476)
T ss_pred             EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEecccee---eEE
Confidence            33556677776654320       111   1111111111234444332  2466 556778999999975321   111


Q ss_pred             EeCCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEE
Q 024436          151 AQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI  229 (268)
Q Consensus       151 ~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  229 (268)
                      ...|.-+..+++||.++ +|++...+.      +.....     ...+           +.+.. ...-..+..+.-..+
T Consensus       214 i~fp~si~av~lDpae~~~yiGt~~G~------I~~~~~-----~~~~-----------~~~~~-v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  214 ITFPSSIKAVALDPAERVVYIGTEEGK------IFQNLL-----FKLS-----------GQSAG-VNQKGRHEENTQINV  270 (476)
T ss_pred             EecCCcceeEEEcccccEEEecCCcce------EEeeeh-----hcCC-----------ccccc-ccccccccccceeee
Confidence            12465688999999875 677665553      211110     0000           00110 112233345555566


Q ss_pred             EEcCCCCceeceEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          230 LEEIGRKMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       230 ~~~~~g~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +.+..++  +.+|..+. .+|.|.+.+-.++.|.+-|..
T Consensus       271 ~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  271 LVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             eccccCC--cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            6554332  45666544 577888777777777666543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=94.06  E-value=0.21  Score=29.63  Aligned_cols=36  Identities=25%  Similarity=0.087  Sum_probs=28.1

Q ss_pred             cCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCC
Q 024436           30 IEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQR   65 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~   65 (268)
                      ..++..|+|+|+++.++ +|+++...+.|.+.+.+|.
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34577899999999866 5557777889988887764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=93.96  E-value=3.5  Score=35.15  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=87.9

Q ss_pred             EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCC------CCCeeEEEeecCCcceEEEEeCCC
Q 024436           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSP------NRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~------~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      .+++|.   -+.+-++|.-+-++..-+|+.++.++.. |+.-..+-..+.      .|+--..++++..+|.+..+|.+|
T Consensus       111 ~~evPe---INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  111 AVEVPE---INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             cccCCc---cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            355554   4567788754434444488888888864 442222211110      111122456778889999999998


Q ss_pred             CeEEEeecCCCCcce---------EEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436          100 KQVTVLLGNLSFPNG---------VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       100 ~~~~~~~~~~~~pnG---------ia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v  170 (268)
                      ++.....+....||-         .|+.-+.++|.+-.  ...+..|.+..   .+......+|+...-+.++.| .+ +
T Consensus       188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~lslwhLrs---se~t~vfpipa~v~~v~F~~d-~v-l  260 (325)
T KOG0649|consen  188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLSLWHLRS---SESTCVFPIPARVHLVDFVDD-CV-L  260 (325)
T ss_pred             cceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCceeEEeccC---CCceEEEecccceeEeeeecc-eE-E
Confidence            887777666555543         34444555664432  23445555432   112222335554556666654 33 3


Q ss_pred             EEecCCCcceeeeEeeCccceeeeecccc
Q 024436          171 GIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      +...+++     |+.|+-.|.+-..+|..
T Consensus       261 ~~G~g~~-----v~~~~l~Gvl~a~ip~~  284 (325)
T KOG0649|consen  261 IGGEGNH-----VQSYTLNGVLQANIPVE  284 (325)
T ss_pred             Eeccccc-----eeeeeeccEEEEeccCC
Confidence            3333333     77888778877777765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=93.93  E-value=0.97  Score=44.40  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..-++++|++||.+|| +....+-+.+|..+.+   .++-+.++.+---++.+.+|+.+|.-..+.+
T Consensus       252 ~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~---~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLL-SGGREGVLVLWQLETG---KKQFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             cccceeEEecCCceEe-ecccceEEEEEeecCC---CcccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence            4467999999999887 5556677777887643   2333344544457899999999877666654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.83  E-value=0.3  Score=41.29  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .-..|.|++++.+|+ |||+-...++|+++++.++
T Consensus       210 e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  210 ESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTG  243 (310)
T ss_pred             CCCCCCcceEccCCc-EEEEEecCcEEEEECCCCC
Confidence            346799999999995 9999999999999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=93.82  E-value=1.4  Score=41.19  Aligned_cols=62  Identities=24%  Similarity=0.322  Sum_probs=42.2

Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CC-CceEEcCCCCEEEEEec
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FP-DNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~P-dgia~d~dG~l~va~~~  174 (268)
                      --..|.||+||++| .+-...+.+.+|++..-+ ....++..|+. +| .+.++.|+.+|.++...
T Consensus       366 ~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  366 DITSISFSYDGNYL-LSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ceeEEEeccccchh-hhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            34589999999855 588888999999997421 11122223432 23 47899999998887653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=93.76  E-value=4.1  Score=36.61  Aligned_cols=86  Identities=22%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             CcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436           88 KTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG  166 (268)
                      ....|..+|++++.-..+. .++..-.-+-|||||+.||.+ +.+.....|......  ..+.+...+|...+-+++|+|
T Consensus       216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t~davfrlw~e~q~w--t~erw~lgsgrvqtacWspcG  292 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-TCDAVFRLWQENQSW--TKERWILGSGRVQTACWSPCG  292 (445)
T ss_pred             CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-cccceeeeehhcccc--eecceeccCCceeeeeecCCC
Confidence            4456788888887665554 444444458999999977655 455555555433211  123344456778889999999


Q ss_pred             C-EEEEEecCC
Q 024436          167 G-FWVGIHSRR  176 (268)
Q Consensus       167 ~-l~va~~~~~  176 (268)
                      + |+.+..+..
T Consensus       293 sfLLf~~sgsp  303 (445)
T KOG2139|consen  293 SFLLFACSGSP  303 (445)
T ss_pred             CEEEEEEcCCc
Confidence            7 555665543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.60  E-value=4.1  Score=34.63  Aligned_cols=149  Identities=13%  Similarity=0.080  Sum_probs=86.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCC-----CCee-EEEeecCCcceEEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPN-----RNHI-SVILSGDKTGRLMKYD   96 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~-----~~~~-~~~~~~~~~g~v~~~d   96 (268)
                      ..+.+.-.. ..-..+.+.-||+..++.-.+..|..|+| .|..+..+...+-.     ..+- ..+.+..+.-.++.||
T Consensus         9 r~~~l~~~q-gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    9 RLSILDCAQ-GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hceeecccc-cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            444444332 24567789999995454444566666776 44444444321100     0000 0112334455788889


Q ss_pred             CCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCce-EEcCCCCEEEEEec
Q 024436           97 PATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI-KRSPRGGFWVGIHS  174 (268)
Q Consensus        97 ~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgi-a~d~dG~l~va~~~  174 (268)
                      -.||++. .+-.+...-|-++|..+- .+.++.+....+..||-....   .+++.-+.-.-||+ .+|-.++..++...
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s---~ePiQildea~D~V~Si~v~~heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS---FEPIQILDEAKDGVSSIDVAEHEIVAGSV  163 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC---CCccchhhhhcCceeEEEecccEEEeecc
Confidence            8888864 455677888999999776 588899999999999875322   12222121123443 55666777776655


Q ss_pred             CCC
Q 024436          175 RRK  177 (268)
Q Consensus       175 ~~~  177 (268)
                      .++
T Consensus       164 DGt  166 (307)
T KOG0316|consen  164 DGT  166 (307)
T ss_pred             CCc
Confidence            543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.45  E-value=1.3  Score=40.27  Aligned_cols=89  Identities=19%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEE-EEeCCCCeE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLM-KYDPATKQV  102 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~  102 (268)
                      -++.|.++.  +|||.++|.+-..+|++.++--||++..+-..                    ...+.+. ..+.  ..+
T Consensus       200 lVR~f~~~s--Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~--------------------~~~~~~v~~~~g--~~l  255 (381)
T PF02333_consen  200 LVREFKVGS--QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG--------------------GNDRTLVASADG--DGL  255 (381)
T ss_dssp             EEEEEE-SS---EEEEEEETTTTEEEEEETTTEEEEEESSCCC---------------------S--EEEEEBSS--SSB
T ss_pred             EEEEecCCC--cceEEEEecccCCEEEecCccEEEEEecCCCC--------------------CCcceeeecccc--ccc
Confidence            366676665  77777777776667777777777777644210                    0001111 1111  001


Q ss_pred             EEeecCCCCcceEEEcc--CC-CEEEEEecCCcEEEEEEccCC
Q 024436          103 TVLLGNLSFPNGVALSE--DG-NYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       103 ~~~~~~~~~pnGia~sp--dg-~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .      .-..||++-.  +| .+|++|+..++...+|+..+.
T Consensus       256 ~------aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  256 V------ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             -------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             c------cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            0      1245777743  33 389999999999999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=93.37  E-value=7  Score=36.67  Aligned_cols=136  Identities=21%  Similarity=0.200  Sum_probs=80.5

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeE------EEeecCCcceEEEEeCCCCeE--EEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHIS------VILSGDKTGRLMKYDPATKQV--TVL  105 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~g~v~~~d~~~~~~--~~~  105 (268)
                      +.--+++|.++|+ .+++..+|.|+.|++++..++..+..-+++-|..      .++++.++-+|..+|.+-.+.  ..+
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence            4566899999999 8888889999999998876544333223322211      123444555666666432222  224


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .+....+.-|+=.. + -|||- +..+.|..=.+.++.  +..++.... .--|++..|+.++|+++....
T Consensus       326 Pe~~G~iRtv~e~~-~-di~vG-TtrN~iL~Gt~~~~f--~~~v~gh~d-elwgla~hps~~q~~T~gqdk  390 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGK-G-DILVG-TTRNFILQGTLENGF--TLTVQGHGD-ELWGLATHPSKNQLLTCGQDK  390 (626)
T ss_pred             chhcCCeeEEecCC-C-cEEEe-eccceEEEeeecCCc--eEEEEeccc-ceeeEEcCCChhheeeccCcc
Confidence            45555565555443 2 37765 455777766665432  123333322 356889998888887776554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=93.36  E-value=5.2  Score=35.09  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEEcCCC--CCeeE--EEeecCCcceEEEEeCCCCeEEEeecC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPN--RNHIS--VILSGDKTGRLMKYDPATKQVTVLLGN  108 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~~~~~--~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~  108 (268)
                      .+-..+-|+|.++.+.++.-||.+...+.+..... .+-...|-  -.|..  ..+.+.-.|.|.++|..++....+..+
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth   93 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH   93 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence            34567888988777888888888877765443111 11000000  00111  234556778999999998887777777


Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ...-.+|..++... ..|+.++.++|..||...
T Consensus        94 ~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             CCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence            66667899997654 678999999999999763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=93.35  E-value=5.4  Score=35.33  Aligned_cols=101  Identities=19%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEE---Ee--CCCCeEEEEE------------------EcCCCCCeeEEEeecCCcce
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIK---WH--QDQRRWLHFA------------------RTSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~---~~--~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~   91 (268)
                      .|.-++|.||-+-+++....|.-++   ..  .||..-..+.                  ...++..|+.   +......
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im---sas~dt~  210 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM---SASLDTK  210 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE---EecCCCc
Confidence            6999999999888888776543333   22  2343211110                  0011112221   2233446


Q ss_pred             EEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           92 LMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        92 v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      |..|+.+ |++-.-. .....-..-++||||++|.++. .+.-|.+|.+-
T Consensus       211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE~~  258 (420)
T KOG2096|consen  211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPI  258 (420)
T ss_pred             EEEEecC-CceeeeeccccccccceeeCCCCcEEEEec-CCCCceEEEEE
Confidence            7777777 5543333 3333344679999998776554 55667777664

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.29  E-value=5.3  Score=35.24  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=43.2

Q ss_pred             cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCce-eEEEeCC--------CCCCceEEcCCCCEEEEE
Q 024436          107 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTI-EIVAQLP--------GFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       107 ~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~-~~~~~l~--------g~Pdgia~d~dG~l~va~  172 (268)
                      ..+..|=||+++|.+ .++|++..++....|+.+.. +.+.. .....+|        +.|.|+.+..-..+-|..
T Consensus        20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            346677899999988 69999999999999998621 11111 1122232        478899987654444443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=93.04  E-value=0.15  Score=47.57  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-cc
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WI  189 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~  189 (268)
                      .+|.++|+|||++|-+ -+..+.+.+|+.+...+  ..+...--|.---+++.|||++.+.......     |.++. ..
T Consensus       292 ~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-----VtVwSf~e  363 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-----VTVWSFEE  363 (636)
T ss_pred             cccceeEcCCCceEEE-EecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEecCCcce-----EEEEEecc
Confidence            6899999999998754 45678889998874211  0111111133447899999998887666542     55554 45


Q ss_pred             ceeeee
Q 024436          190 GNVLIK  195 (268)
Q Consensus       190 g~~l~~  195 (268)
                      ++++++
T Consensus       364 rRVVAR  369 (636)
T KOG2394|consen  364 RRVVAR  369 (636)
T ss_pred             ceEEEe
Confidence            666554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.80  E-value=2.7  Score=38.21  Aligned_cols=136  Identities=18%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE--------EcCCCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA--------RTSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~--------~~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      |..++....  +...|+..  +..+.++..|.+|.-|+..+. ......        ..+.++   ..++.......+-.
T Consensus       295 C~kt~l~~S--~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g---~~lLsssRDdtl~v  367 (459)
T KOG0288|consen  295 CSKTVLPGS--QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG---LELLSSSRDDTLKV  367 (459)
T ss_pred             eeccccccc--cccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC---eEEeeecCCCceee
Confidence            444444443  56677766  344666777888877774322 111111        111222   12233345667778


Q ss_pred             EeCCCCeEEEeecC--C---CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC---CCceEEcCCC
Q 024436           95 YDPATKQVTVLLGN--L---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF---PDNIKRSPRG  166 (268)
Q Consensus        95 ~d~~~~~~~~~~~~--~---~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~---Pdgia~d~dG  166 (268)
                      +|..+.++......  +   +-.+-+.||||+.++ .+.+.+++|+.|++.+++   .+.....++-   -.-+++++.|
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv-aAGS~dgsv~iW~v~tgK---lE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV-AAGSADGSVYIWSVFTGK---LEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCcee-eeccCCCcEEEEEccCce---EEEEeccCCCCcceEEEEEcCCC
Confidence            88887777665422  2   235789999999744 577888999999998754   3333333322   2456777777


Q ss_pred             CEEE
Q 024436          167 GFWV  170 (268)
Q Consensus       167 ~l~v  170 (268)
                      .-.+
T Consensus       444 ~~Ll  447 (459)
T KOG0288|consen  444 SGLL  447 (459)
T ss_pred             chhh
Confidence            5333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.73  E-value=5.7  Score=38.93  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CCCEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcce
Q 024436           22 TQGVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~   91 (268)
                      ..++.+|..+.  .-.+++|.| |.+.++++.-||+|..|+-....+..+..         ..|++++..   -+.-+|.
T Consensus       400 ~~CL~~F~Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av---IGt~~G~  474 (712)
T KOG0283|consen  400 KECLKVFSHND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV---IGTFNGY  474 (712)
T ss_pred             cceeeEEecCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE---EEEeccE
Confidence            34788888886  789999999 56666778889999888754443333321         235554321   2234566


Q ss_pred             EEEEeCCCCeEEEee---------cCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCc
Q 024436           92 LMKYDPATKQVTVLL---------GNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDN  159 (268)
Q Consensus        92 v~~~d~~~~~~~~~~---------~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdg  159 (268)
                      ...|+...-+.+.-.         .....-.|+.+.|... .|.|| +...+|..|+..+..+  ...|...  .+-..-
T Consensus       475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDL--VHKFKGFRNTSSQIS  551 (712)
T ss_pred             EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhh--hhhhcccccCCccee
Confidence            666766644433211         0112456898886543 37776 4678999999743221  1112110  012333


Q ss_pred             eEEcCCCCEEEEEecCC
Q 024436          160 IKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       160 ia~d~dG~l~va~~~~~  176 (268)
                      -.++.||+..|+....+
T Consensus       552 Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  552 ASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEccCCCEEEEeecCc
Confidence            45666887666665443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=92.69  E-value=1.8  Score=39.27  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=72.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-EcCCCCC----e------eEEEeecCCcceE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA-RTSPNRN----H------ISVILSGDKTGRL   92 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~-~~~~~~~----~------~~~~~~~~~~g~v   92 (268)
                      ++.++..|.  .-.++.|..||.++.+...|.+|..+++....+..-+ ...+.++    |      +..-++....-.+
T Consensus       166 ali~l~hpd--~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~  243 (472)
T KOG0303|consen  166 ALITLDHPD--MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI  243 (472)
T ss_pred             eeeecCCCC--eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence            444444443  5788899999999999999999988988543222211 1111111    1      1111122223345


Q ss_pred             EEEeCCCCeEEEeecCCCCcceEE---EccCCCEEEEEecCCcEEEEEEccC
Q 024436           93 MKYDPATKQVTVLLGNLSFPNGVA---LSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~~~~pnGia---~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      -.+|+++-+.-.....+...||+-   ++||.+.+|++.-+.+.|..|.+..
T Consensus       244 aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  244 ALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            566776433323344556677875   5899999999999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.51  E-value=2.8  Score=38.57  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCC-EEEEEecCC
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      +-|+++..|..+ |+.+.+.+++|..|.+..+. .....+..  +.|..+.+++..+|+ ++++...-+
T Consensus       382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~-r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDGL-RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH  448 (479)
T ss_pred             ceeeeEecccCc-eEEecCCCCceEEEEecCCc-cccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence            568999999775 88999999999999887531 12344444  458889999999998 777665444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=92.42  E-value=3.4  Score=36.44  Aligned_cols=71  Identities=13%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC-CceeEEEeCCCCCCceEEcCCCCEEEEEec
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~-g~~~~~~~l~g~Pdgia~d~dG~l~va~~~  174 (268)
                      ++.+.+...--|.+.|.|... +.++.+..+.|.-||...... ....+|.+.. ....|.+.|.|.+......
T Consensus       165 IRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~-~vrsiSfHPsGefllvgTd  236 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE-PVRSISFHPSGEFLLVGTD  236 (430)
T ss_pred             EeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccc-eeeeEeecCCCceEEEecC
Confidence            445566667779999999985 888999999999999874321 1122333321 3578899999985554433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=92.40  E-value=6  Score=33.36  Aligned_cols=59  Identities=14%  Similarity=0.202  Sum_probs=36.1

Q ss_pred             cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436          112 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~  173 (268)
                      -..++++|.|+ |.++.-.....+.||+.|+..  ...|..-..--+.+.+.|.-.+.+.+.
T Consensus       234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~s  292 (350)
T KOG0641|consen  234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCS  292 (350)
T ss_pred             eEEEEECCCcc-eeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEec
Confidence            34689999996 778877777888899986432  122211112345677887555444443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.35  E-value=10  Score=35.83  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=72.6

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcc-eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC----CCceEE
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF----PDNIKR  162 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pn-Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~----Pdgia~  162 (268)
                      .....+.+|.+ |.++-......... .+...++|+.++.+.   +++..+++.|.    .....++++.    -+.+..
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~----v~~~~~l~~~~~~~HHD~~~  197 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGK----VIWEYDLPGGYYDFHHDIDE  197 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT------EEEEEE--TTEE-B-S-EEE
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCC----EEEeeecCCcccccccccEE
Confidence            45678888887 77764433222222 177889997554443   89999998762    2222345542    478889


Q ss_pred             cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCC-----C--
Q 024436          163 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG-----R--  235 (268)
Q Consensus       163 d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-----g--  235 (268)
                      .++|++++..+....     ... .          ....    ..    .  -.++.+|++|+++..++-.+     .  
T Consensus       198 l~nGn~L~l~~~~~~-----~~~-~----------~~~~----~~----~--D~Ivevd~tG~vv~~wd~~d~ld~~~~~  251 (477)
T PF05935_consen  198 LPNGNLLILASETKY-----VDE-D----------KDVD----TV----E--DVIVEVDPTGEVVWEWDFFDHLDPYRDT  251 (477)
T ss_dssp             -TTS-EEEEEEETTE-----E-T-S-----------EE-----------S---EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred             CCCCCEEEEEeeccc-----ccC-C----------CCcc----Ee----c--CEEEEECCCCCEEEEEehHHhCCccccc
Confidence            999997776553321     000 0          0000    00    1  34778888888888766311     0  


Q ss_pred             ----------------CceeceEEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 024436          236 ----------------KMWRSISEVEE--KDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       236 ----------------~~~~~~s~~~~--~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                                      ...-.+.++..  .++.|.+.+...+.|.+|+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence                            01111333433  3688999999999999998553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=92.28  E-value=9.2  Score=35.21  Aligned_cols=131  Identities=13%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEe-CCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWH-QDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~-~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .-.++...|.|+.+....+++...--+ .+|..++....           ..|++   ..+..+..++.|-.||.+++..
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccc
Confidence            357788888888666665554432212 23333222211           11222   2333556677777777764432


Q ss_pred             EEeecCCC-CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-C-CCCceEEcCCCCEEEEE
Q 024436          103 TVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-G-FPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       103 ~~~~~~~~-~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g-~Pdgia~d~dG~l~va~  172 (268)
                      ..-..+-. --.-|+|+.+| +-.++....+.|.-||+.-  +.....+. ++ . ....+.+|..|.+.+..
T Consensus       382 ~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hcccceee-ccccccceeEEEcCCCCeEEee
Confidence            21122222 22579999998 5556777778899999862  11222222 21 1 24568999999876655

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=92.25  E-value=2.1  Score=37.35  Aligned_cols=101  Identities=20%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -+-+.|+|+|..++++-.|.+|+.|...|.. ..+...            ..+.+.   ++....+-+|+.+|.++|+..
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~---i~S~gtDk~v~~wD~~tG~~~  125 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSH---ILSCGTDKTVRGWDAETGKRI  125 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCE---EEEecCCceEEEEecccceee
Confidence            4567899999988888889999999865431 111111            111111   234445568889999887653


Q ss_pred             -EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436          104 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus       104 -~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                       .....-.+-|-+.-+.-|-.|..+.+..+.+..||+.
T Consensus       126 rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  126 RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             ehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence             4455667778888777788888888889999999986

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=3.7  Score=34.32  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             CcceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           88 KTGRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~---~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      +...|.++|..+|++..   +...-.|..||.-..|  ++|.--+..+.-++||.+.  +.....| .-+|.-.|++-|.
T Consensus        66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LTw~egvaf~~d~~t--~~~lg~~-~y~GeGWgLt~d~  140 (262)
T COG3823          66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLTWKEGVAFKYDADT--LEELGRF-SYEGEGWGLTSDD  140 (262)
T ss_pred             ccceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEEeccceeEEEChHH--hhhhccc-ccCCcceeeecCC
Confidence            45678888888776543   2223346678887754  7998888888888888764  1111111 1245566777764


Q ss_pred             CCCEEEEEecC
Q 024436          165 RGGFWVGIHSR  175 (268)
Q Consensus       165 dG~l~va~~~~  175 (268)
                      + +||.++...
T Consensus       141 ~-~LimsdGsa  150 (262)
T COG3823         141 K-NLIMSDGSA  150 (262)
T ss_pred             c-ceEeeCCce
Confidence            3 687766543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.17  E-value=2.3  Score=42.75  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             CcceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC--ceeEEEeCCC--CCCceEE
Q 024436           88 KTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG--TIEIVAQLPG--FPDNIKR  162 (268)
Q Consensus        88 ~~g~v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g--~~~~~~~l~g--~Pdgia~  162 (268)
                      -.++|..++..+-+ ++++.++...+-|+.|+|-|+++ .+.+..+.|.+|+.....+.  -.+.|.+.++  +-.-+.+
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence            34677777776543 45556677788999999999844 67788889999986542111  0122332222  3345778


Q ss_pred             cCCCCEEEEEecCC--CcceeeeEe
Q 024436          163 SPRGGFWVGIHSRR--KGISKLVLS  185 (268)
Q Consensus       163 d~dG~l~va~~~~~--~~~~~~v~~  185 (268)
                      .|||..+++.+.-+  ...+..|.+
T Consensus       228 SPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  228 SPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             CCCcCeecchhhccCCcceeEEEec
Confidence            89998776554322  134444444

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.15  E-value=1.5  Score=31.14  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             CCCceEEcCCCC-EEEEEecCCC
Q 024436          156 FPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       156 ~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                      .|+||+++++++ |||+....+.
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCe
Confidence            699999999986 8999987764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=92.08  E-value=1.7  Score=41.22  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=40.3

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      =.+|.|..||...+ ++........|+-++|.|+|. +++..+..+.++-||+.
T Consensus       278 C~DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  278 CEDGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCeEEEEEcCCC-eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence            35688889988744 555555557799999999997 55555678999999986

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.03  E-value=7.5  Score=33.64  Aligned_cols=185  Identities=13%  Similarity=0.008  Sum_probs=93.4

Q ss_pred             EEECCC-CCEEEEEeCCCeEEEEeCC-CC-eEEEEEEcCCCC----C-eeEE-EeecCCcceEEEEeCCCCeE-EEe--e
Q 024436           39 LAFDAL-GEGPYTGVSDGRIIKWHQD-QR-RWLHFARTSPNR----N-HISV-ILSGDKTGRLMKYDPATKQV-TVL--L  106 (268)
Q Consensus        39 ia~~~d-G~~l~~~~~~g~I~~~~~~-g~-~~~~~~~~~~~~----~-~~~~-~~~~~~~g~v~~~d~~~~~~-~~~--~  106 (268)
                      +.+-+| ..++|.+.+.+++..+++. |+ .|+..-   +.|    . ...+ +.-+=.+|.+|.++-+||+. -..  .
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            445554 3455678889999999875 43 232211   111    0 0011 11223457788888887732 211  1


Q ss_pred             cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCC-CCCceEEcC-CCCEEEEEecCCCcceeee
Q 024436          107 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPG-FPDNIKRSP-RGGFWVGIHSRRKGISKLV  183 (268)
Q Consensus       107 ~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g-~Pdgia~d~-dG~l~va~~~~~~~~~~~v  183 (268)
                      +...  ---..++|+..+|. .+.++..+..|+...    .-++.. .+| .--+-++++ +|.||++...+.-     +
T Consensus        93 ~~vk--~~a~~d~~~glIyc-gshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v-----l  160 (354)
T KOG4649|consen   93 ETVK--VRAQCDFDGGLIYC-GSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV-----L  160 (354)
T ss_pred             hhhc--cceEEcCCCceEEE-ecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEEeccceE-----E
Confidence            1111  12456778876765 467788888887631    223322 222 233447777 7899999888752     3


Q ss_pred             EeeCccc--eeeee--ccccc-eeeeeeccc---cCCCcEEEEEECCCCCEEEEEEcCCCCceec
Q 024436          184 LSFPWIG--NVLIK--LPIDI-VKIHSSLVK---LSGNGGMAMRISEQGNVLEILEEIGRKMWRS  240 (268)
Q Consensus       184 ~~~~~~g--~~l~~--i~~~~-~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~  240 (268)
                      +..+..+  ..+..  ..-|. .-+.++-..   ..-+ |.+..+++.|+.+..+... |..+.+
T Consensus       161 avt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~Vd-G~l~~f~~sG~qvwr~~t~-GpIf~~  223 (354)
T KOG4649|consen  161 AVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVD-GVLTSFDESGRQVWRPATK-GPIFME  223 (354)
T ss_pred             EEccCCCCcceehhhhcCCccccCceeccceEEEEEec-cEEEEEcCCCcEEEeecCC-Cceecc
Confidence            3333333  11111  11110 000111000   1123 5678899999888877653 444443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=91.87  E-value=8.2  Score=35.53  Aligned_cols=133  Identities=18%  Similarity=0.226  Sum_probs=72.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCe-EE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQ-VT  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~  103 (268)
                      .-.+.+|.|||-++.++..|+.|-.|+.... ....|...         +.++ |....  ...+++|..||...-+ .+
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat--~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLAT--AADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEE--EecCCeEEEEEehhhcccc
Confidence            3567899999998888888888888876432 11222111         1111 22222  2344568888875211 11


Q ss_pred             Ee-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          104 VL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       104 ~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      .+ .+.....|.+.|++-|++|-++ ...-+|+.++-....-.....+.+..|..+|+.+...-.+...
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEee
Confidence            11 2233346889999999977666 3333444444222111112222333467888888765544433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.86  E-value=9.2  Score=35.49  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=53.9

Q ss_pred             ceEEEEeCCCCeEEEeecCC---CCcceEEE--ccCCCEEEEEecCCcEEEEEEcc-CCCCCceeEEEe-----------
Q 024436           90 GRLMKYDPATKQVTVLLGNL---SFPNGVAL--SEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQ-----------  152 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~---~~pnGia~--spdg~~lyva~~~~~~I~~~~~~-~~~~g~~~~~~~-----------  152 (268)
                      .++..+|..+++..+..+-.   ..|--|.|  +|+..+=||.--.+..|++|-.+ ++.- ..+.+++           
T Consensus       222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-AAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-EEEEEEEE--EE--SS--
T ss_pred             CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-eeeEEEECCCcccCcccc
Confidence            47889999888877665432   23444544  46677888888888999998763 3210 1112222           


Q ss_pred             --C-------CCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeeccc
Q 024436          153 --L-------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  198 (268)
Q Consensus       153 --l-------~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~  198 (268)
                        +       |+++..|.+..|++ ||+++|..+ .+.+|-...+..=++...+..
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G-dvrqYDISDP~~Pkl~gqv~l  355 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG-DVRQYDISDPFNPKLVGQVFL  355 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTT-EEEEEE-SSTTS-EEEEEEE-
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCC-cEEEEecCCCCCCcEEeEEEE
Confidence              1       45677888888886 899999887 333332222333344544443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=1  Score=40.61  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             ecCCcceEEEEeCCCCeEEEe-ecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEE
Q 024436           85 SGDKTGRLMKYDPATKQVTVL-LGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  162 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~-~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~  162 (268)
                      +....+.+-.||+..++-.+. .+-...| ..+.+.|+|+++|++++. +.+..||..++.+.. ..+..+.|-+..|..
T Consensus       221 t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g-~~~kg~tGsirsih~  298 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG-CGLKGITGSIRSIHC  298 (412)
T ss_pred             EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec-cccCCccCCcceEEE
Confidence            345678888899885433222 1112222 468899999999999864 778999987643211 112335678999999


Q ss_pred             cCCCCEEEEEecCCCcceeeeEeeC-ccceeeeec
Q 024436          163 SPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL  196 (268)
Q Consensus       163 d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i  196 (268)
                      ++.+.+...+.-.     +||..|. .+++++..+
T Consensus       299 hp~~~~las~GLD-----RyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  299 HPTHPVLASCGLD-----RYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             cCCCceEEeeccc-----eeEEEeecccchhhhhh
Confidence            9988777666443     3466675 344555443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=91.74  E-value=5.1  Score=37.53  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=58.1

Q ss_pred             CCcceEEEEeCCCCeEEEee-cCCCC-cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           87 DKTGRLMKYDPATKQVTVLL-GNLSF-PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~-~~~~~-pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ..+|.|..||..+.....-+ +.-.. ..||+|+|-...|+|+-....+|+.||....... .....+-|  -.-+++.+
T Consensus       184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~P--lstvaf~~  260 (673)
T KOG4378|consen  184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTYSHP--LSTVAFSE  260 (673)
T ss_pred             ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeeecCC--cceeeecC
Confidence            34577777777632222111 22223 4699999998899999999999999998632211 11222222  24688999


Q ss_pred             CCCEEEEEecCCCcceee
Q 024436          165 RGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       165 dG~l~va~~~~~~~~~~~  182 (268)
                      +|.++++....+ +++.|
T Consensus       261 ~G~~L~aG~s~G-~~i~Y  277 (673)
T KOG4378|consen  261 CGTYLCAGNSKG-ELIAY  277 (673)
T ss_pred             CceEEEeecCCc-eEEEE
Confidence            998777776665 54444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=91.70  E-value=8.2  Score=33.42  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             CCcceEEECCC-CCEEEEEeCCCeEEEEeCC-CCeEEEEEE-------------cCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRRWLHFAR-------------TSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~-g~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ..-..+|+.|- |.++++...+..|..++.. +..|.-...             -+|.++|+..   ......+..+...
T Consensus        15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~---aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLAS---ASFDATVVIWKKE   91 (312)
T ss_pred             CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEE---eeccceEEEeecC
Confidence            35788999998 8888887778887777766 333322211             1233333321   1222233333222


Q ss_pred             CCeEEEe---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEE
Q 024436           99 TKQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus        99 ~~~~~~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~  172 (268)
                      .++.+.+   .++-..--+++|+++|++| .+-+....||.|.++.+  .+.+...-|.   .-.-.+.+.|.-.|++++
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~ded--dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDED--DEFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCC--CcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence            2444332   2333445689999999855 45566789999998832  1222222221   235578888865565555


Q ss_pred             ecCC
Q 024436          173 HSRR  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ...+
T Consensus       169 SYDn  172 (312)
T KOG0645|consen  169 SYDN  172 (312)
T ss_pred             ccCC
Confidence            4443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=91.65  E-value=3.2  Score=37.46  Aligned_cols=103  Identities=21%  Similarity=0.309  Sum_probs=56.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEE-EEcCCCCCeeEE-------EeecCCcceEEEEeC---CCCe
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHF-ARTSPNRNHISV-------ILSGDKTGRLMKYDP---ATKQ  101 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~--~~~~-~~~~~~~~~~~~-------~~~~~~~g~v~~~d~---~~~~  101 (268)
                      .+..+...++|+++++.....+.+.++-.++.  +.-. ....+.++....       ..-..+.|.+|.+|-   ..+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            56777888899988888877665444322211  1111 001111111000       001123344444432   2255


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCc-EEEEE
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSC-RILRY  137 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~-~I~~~  137 (268)
                      .+....++.+-..++++||+++|..+|...+ ||.+|
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence            5566677788889999999999988887644 44444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.62  E-value=5  Score=36.00  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCC---e--------E--EEEEEc---------CCCCCeeEEEeecCCcceEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---R--------W--LHFART---------SPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~--------~--~~~~~~---------~~~~~~~~~~~~~~~~g~v~   93 (268)
                      -.-+++..||.++.+..++.++..|-...+   .        +  ..++..         .+..+-+.....+..++.|-
T Consensus       238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            346788899998877777877777654322   0        0  011111         01111111122334455666


Q ss_pred             EEeCCCCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           94 KYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        94 ~~d~~~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+|-.++.. -.+.....+-.|++|+|.|++|+ +-..+..+.+|++..
T Consensus       318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKN  365 (406)
T ss_pred             EEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecc
Confidence            667666754 34567778889999999999775 556788999999875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.35  E-value=3.8  Score=37.38  Aligned_cols=85  Identities=22%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCC-CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CC--CceEE
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FP--DNIKR  162 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~-~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~P--dgia~  162 (268)
                      .....+|.+|.++++++++.++-. ...|..++|+.+.+|... ..++|+++++++.   +.+.+.++|. .-  .....
T Consensus        57 dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~  132 (386)
T PF14583_consen   57 DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVA  132 (386)
T ss_dssp             TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE
T ss_pred             CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC---cEEEEEECCcccccccceee
Confidence            345689999999999999987542 233888999999886543 3478999999863   2344445431 11  12334


Q ss_pred             cCCCCEEEEEecC
Q 024436          163 SPRGGFWVGIHSR  175 (268)
Q Consensus       163 d~dG~l~va~~~~  175 (268)
                      ++|+.++++....
T Consensus       133 n~d~t~~~g~e~~  145 (386)
T PF14583_consen  133 NSDCTKLVGIEIS  145 (386)
T ss_dssp             -TTSSEEEEEEEE
T ss_pred             CCCccEEEEEEEe
Confidence            7788887776543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.33  E-value=5.2  Score=35.99  Aligned_cols=88  Identities=18%  Similarity=0.113  Sum_probs=57.8

Q ss_pred             eecCCcceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecC----CcEEEEEEcc-CCCCCceeEEEeCCCCC
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETT----SCRILRYWLK-TSKAGTIEIVAQLPGFP  157 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~----~~~I~~~~~~-~~~~g~~~~~~~l~g~P  157 (268)
                      .+..+...|+.++.+++..+.+..+-..- .=+.++++++.||++...    ...|++.+++ ++   ..+.+... ...
T Consensus       254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~-~~~  329 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE-DGD  329 (353)
T ss_dssp             EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT-SST
T ss_pred             EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC-CCC
Confidence            34456678999999977767665443333 347889999999998765    4589999988 42   23322222 234


Q ss_pred             C-ceEEcCCCCEEEEEecC
Q 024436          158 D-NIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       158 d-gia~d~dG~l~va~~~~  175 (268)
                      . .+.++++|+.++-.+.+
T Consensus       330 ~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  330 HYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             TEEEEE-TTSSEEEEEEES
T ss_pred             ceEEEECCCCCEEEEEEcC
Confidence            4 79999999987755543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=91.04  E-value=13  Score=35.04  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=61.9

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .-+.--+.|||+.+.++-..-.+..||........-+.            .+++.+.   .+..-..|.|..||..+..+
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakv---cFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV---CFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce---eeeeccCCcEEEEEccccee
Confidence            34455667777777776655566666644321111111            1122221   23334567788888765433


Q ss_pred             -EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          103 -TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       103 -~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                       +.+...-.....|.+++||..|| +....++|..||+..
T Consensus       544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlre  582 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLRE  582 (705)
T ss_pred             eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhh
Confidence             34444455677899999998776 777889999999863

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.03  E-value=9.2  Score=33.75  Aligned_cols=30  Identities=17%  Similarity=0.102  Sum_probs=21.9

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeC-CCC
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQ-DQR   65 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~   65 (268)
                      .+++...++|+++++..+...|++|++ +|+
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~  176 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGK  176 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCc
Confidence            356677888887777777788888885 444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=91.03  E-value=12  Score=36.39  Aligned_cols=134  Identities=17%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-CC--ee--EEEeecCCcceEEEEeCCCCeEEEeecCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-RN--HI--SVILSGDKTGRLMKYDPATKQVTVLLGNL  109 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~~--~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~  109 (268)
                      .-..++.-|++. ++++..|..|..|..+ +....|.....- |.  .+  ..+++...+|.|.+++.++..+.+...+-
T Consensus       142 sVWAv~~l~e~~-~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ght  219 (745)
T KOG0301|consen  142 SVWAVASLPENT-YVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHT  219 (745)
T ss_pred             heeeeeecCCCc-EEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccc
Confidence            455677777774 7888877777666543 322222111000 00  00  12345567788989988755566667777


Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCCCCEEEEEecCC
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .+-..|....+++ ++|+-..++++..|+.+     +.....++|+ --....+=++|.+++++..+.
T Consensus       220 n~vYsis~~~~~~-~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~  281 (745)
T KOG0301|consen  220 NFVYSISMALSDG-LIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGR  281 (745)
T ss_pred             eEEEEEEecCCCC-eEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCCEEEeccCce
Confidence            7777888555554 77787777888888754     2233334553 122333445666666666654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=90.92  E-value=2.6  Score=38.85  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      .+..|.  .+.++++||.++.+|++..+|.|+.+...+..  ++              ...-..+.+.  ..+-++..+.
T Consensus       213 ti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~--~~--------------~~~v~~k~~~--~~~t~~~~~~  272 (476)
T KOG0646|consen  213 TITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLS--GQ--------------SAGVNQKGRH--EENTQINVLV  272 (476)
T ss_pred             EEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCC--cc--------------cccccccccc--cccceeeeec
Confidence            334443  68889999999999999999999776543210  00              0000011111  2212344444


Q ss_pred             cCCC--CcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          107 GNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       107 ~~~~--~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ++..  .-..++++-||. |.++....+++.+||+..
T Consensus       273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence            4333  456899999995 778888899999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.89  E-value=3.6  Score=40.09  Aligned_cols=124  Identities=17%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      +|  ++++++|+.+||.+++ +|..++. ++.....+.           ...+++.++...   ....-+-.|+..++++
T Consensus        23 G~--~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a---~rs~llrv~~L~tgk~   96 (775)
T KOG0319|consen   23 GP--VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA---SRSQLLRVWSLPTGKL   96 (775)
T ss_pred             Cc--eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe---eccceEEEEEcccchH
Confidence            46  8999999999997654 3433443 222101111           112333322211   1222233344455555


Q ss_pred             EEeecC-CCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436          103 TVLLGN-LSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus       103 ~~~~~~-~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      ...+.. -..| -.++|+|-| .|..+....+++.+|+++++..  ...|...||...-+.+.++=+
T Consensus        97 irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~--th~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   97 IRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYC--THSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             hHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEE--EEEecCCCceEEEEEeCCccc
Confidence            444433 2334 479999999 5877888889999999986432  123344455555555655543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.88  E-value=13  Score=34.32  Aligned_cols=50  Identities=24%  Similarity=0.317  Sum_probs=34.3

Q ss_pred             CCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           87 DKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +.+-++|++ |+  +.+.+. .+-..+..++|-.|.  =||+.+.++.|.-|.+..
T Consensus       307 DrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  307 DRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             cceeEEEec-cc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence            455677777 33  233333 334478889998775  357999999999999863

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=90.83  E-value=0.25  Score=29.26  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=18.2

Q ss_pred             CCCceEEcCCCCEEEEEecCC
Q 024436          156 FPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       156 ~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .|.+|++|++|++||+.....
T Consensus        14 ~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eEEEEEECCCCCEEEEEeecC
Confidence            488999999999999987654

SBBP stands for Seven Bladed Beta Propeller.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=90.25  E-value=11  Score=32.56  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEE-eCCCCeEEEEEEcCCCCCe-------eEEEeecCCcceEEEEeCCCCeEEEeec
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKW-HQDQRRWLHFARTSPNRNH-------ISVILSGDKTGRLMKYDPATKQVTVLLG  107 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~-~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~g~v~~~d~~~~~~~~~~~  107 (268)
                      -.-|-+..+|+++++...|...-.| ..+|+++-.+....+ .-|       -..++++..+..+..||-.+|+....++
T Consensus        13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence            3456788999998887766555554 346664322211100 000       0112344555556666666777666565


Q ss_pred             CCCCcceEEEccCCCEEEEE-ec---CCcEEEEEEccCC--CCCceeEEEeCC---CCCCceEEcCCCCEEEEEecCCC
Q 024436          108 NLSFPNGVALSEDGNYILLA-ET---TSCRILRYWLKTS--KAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva-~~---~~~~I~~~~~~~~--~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      -.....++.|+++|+.+.++ |-   ....|..|++...  .....+++..++   .-+.-.-+++-|..+++.+..+.
T Consensus        92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~  170 (327)
T KOG0643|consen   92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS  170 (327)
T ss_pred             cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence            55555789999999755443 22   3357888888632  111223233222   23556677788888888777764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.85  E-value=1.8  Score=24.88  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=25.4

Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  138 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~  138 (268)
                      .+.......+.|+++|+++.| ++-+.++.|..|+
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence            344555677899999998755 5666778888885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.31  E-value=20  Score=34.03  Aligned_cols=54  Identities=17%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             ecCCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           85 SGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +.....++..+++..+.+...+ .+-..+..++++|||+.|.++.   +.|.+|++..
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~  173 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIET  173 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccC
Confidence            3344556666666655444333 3445677899999999776553   7899999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.01  E-value=1.9  Score=24.69  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH   61 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~   61 (268)
                      ++++.-. .....++++.|+++.++++..|+.|..++
T Consensus         4 ~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3444444 35789999999999999999999997664

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PHA02713 hypothetical protein; Provisional

Probab=88.75  E-value=24  Score=34.07  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             CCCCEEEEEeC------CCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEeecC---CcceEEEEeCCCCeEEE
Q 024436           43 ALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNR---------NHISVILSGD---KTGRLMKYDPATKQVTV  104 (268)
Q Consensus        43 ~dG~~l~~~~~------~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~---~~g~v~~~d~~~~~~~~  104 (268)
                      -++.+|+++-.      ...+.++++..+.|...+.....|         ..++.+....   ....+.+|||.+.+++.
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            36666665432      145778888777776554332222         1222221111   12458899999888876


Q ss_pred             eecCCCCc---ceEEEccCCCEEEEEec
Q 024436          105 LLGNLSFP---NGVALSEDGNYILLAET  129 (268)
Q Consensus       105 ~~~~~~~p---nGia~spdg~~lyva~~  129 (268)
                      +.. +..|   .+++.. +| .|||...
T Consensus       382 ~~~-mp~~r~~~~~~~~-~g-~IYviGG  406 (557)
T PHA02713        382 LPD-MPIALSSYGMCVL-DQ-YIYIIGG  406 (557)
T ss_pred             CCC-CCcccccccEEEE-CC-EEEEEeC
Confidence            543 2222   133332 55 6999754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=88.71  E-value=14  Score=31.58  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=57.1

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCC----------CCeEEEEEEcCCCCC-e----eEEEeecCCcceEEEEeCCCC----
Q 024436           40 AFDALGEGPYTGVSDGRIIKWHQD----------QRRWLHFARTSPNRN-H----ISVILSGDKTGRLMKYDPATK----  100 (268)
Q Consensus        40 a~~~dG~~l~~~~~~g~I~~~~~~----------g~~~~~~~~~~~~~~-~----~~~~~~~~~~g~v~~~d~~~~----  100 (268)
                      |++|-++++++++..|.|..++.+          |+. ..++.-.-+++ |    -.+++-..+.|.|+-+....-    
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~   95 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-KIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESL   95 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc-ceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhc
Confidence            577888888888888888766532          111 11111111111 1    112222234577766544310    


Q ss_pred             eEEEee----------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC
Q 024436          101 QVTVLL----------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK  143 (268)
Q Consensus       101 ~~~~~~----------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~  143 (268)
                      ..+.++          -..+--|.+-++|..+.++.+. +.+.++.+|+++++
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~  147 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR  147 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE
Confidence            011111          1223448999999988898887 77899999998643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=88.25  E-value=26  Score=33.95  Aligned_cols=145  Identities=17%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             ceEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEEcCCCCC---------eeEEEeec---CCcceEEEEeCC
Q 024436           37 ESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRN---------HISVILSG---DKTGRLMKYDPA   98 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~------g~I~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~---~~~g~v~~~d~~   98 (268)
                      .++++. +|.+|+++-.+      ..+.++++....|...+.....|.         .++.+...   ..-..+-+|||.
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            334433 45666664333      567788888877877654433331         22222111   122368899999


Q ss_pred             CCeEEEeecCCC--CcceEEEccCCCEEEEEecCC------cEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCE
Q 024436           99 TKQVTVLLGNLS--FPNGVALSEDGNYILLAETTS------CRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGF  168 (268)
Q Consensus        99 ~~~~~~~~~~~~--~pnGia~spdg~~lyva~~~~------~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l  168 (268)
                      +.+++.+..-..  .-.|++.- +| .||+.....      ..+.+||+...   ..+.....+  -.-.|+++- +|.|
T Consensus       405 ~~~W~~va~m~~~r~~~gv~~~-~g-~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~g~a~~-~~~i  478 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRRSGHGVAVL-GG-KLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGFGVAVL-NGKI  478 (571)
T ss_pred             CCcccccCCCCcceeeeEEEEE-CC-EEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccceEEEE-CCEE
Confidence            888877664332  22344443 45 699986522      46788887642   222222221  112355554 5788


Q ss_pred             EEEEecCCCcceeeeEeeCc
Q 024436          169 WVGIHSRRKGISKLVLSFPW  188 (268)
Q Consensus       169 ~va~~~~~~~~~~~v~~~~~  188 (268)
                      |+.....+...++-+.+|.+
T Consensus       479 YvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  479 YVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             EEECCccCCCccceEEEEcC
Confidence            88554332222333444544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=87.85  E-value=2.4  Score=38.58  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCC------CCeeEEEeecCCcceEEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPN------RNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~------~~~~~~~~~~~~~g~v~~~d   96 (268)
                      .|..+.......-+++||+|....+++..+||+|..|+-- .+.-..+...+-+      .+....+..+.++.-|-.+|
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            3333333333467899999988878888889999888642 1110111111000      01223344445555777899


Q ss_pred             CCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           97 PATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        97 ~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      |++|+.. .+...-..--++.|.|++.+| .+-+..+.+.+||+.
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~L-lt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWL-LTGSKDQSCKVFDIR  294 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCee-EEccCCceEEEEehh
Confidence            9877532 223333344578999999755 577777889999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.35  E-value=22  Score=32.13  Aligned_cols=147  Identities=10%  Similarity=0.085  Sum_probs=78.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC----CCCeeEEEeecCCcceEEEEeCCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP----NRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      ++.++.-.. .--.||+++. +.++.+ -.|..|-+|..+|.....+...+.    +..+....+. .+...|-.||..-
T Consensus       101 ~~~~f~AH~-G~V~Gi~v~~-~~~~tv-gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa-TcGe~i~IWD~~R  176 (433)
T KOG0268|consen  101 CIRTFKAHE-GLVRGICVTQ-TSFFTV-GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA-TCGEQIDIWDEQR  176 (433)
T ss_pred             hhheeeccc-CceeeEEecc-cceEEe-cCCcceeeeeccCCcceeeecccccccccccccccccc-ccCceeeeccccc
Confidence            455555442 2467888887 443444 345556555544432222221110    0001111111 1112233444321


Q ss_pred             -CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436          100 -KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       100 -~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                       .-++.+.-+...-..+-|+|-...|..+....+.|..||+..... -..+...  -.+++|++.|++-.+++.....+
T Consensus       177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~--mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVILT--MRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cceeeee--ccccceecCccccceeecccccc
Confidence             123333333333467999999988888877889999999874321 1122222  36899999998878888777764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.16  E-value=3.3  Score=24.23  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=18.5

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALS  118 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~s  118 (268)
                      ..++|..+|+.+++...-......|.+|+|+
T Consensus        12 ~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276        12 GSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            4456666666655554444445667777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.94  E-value=19  Score=30.86  Aligned_cols=80  Identities=19%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             ceEEEEeCCCCeEEEeecCC----CCcceEEEccCCCEEEEEe--cCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436           90 GRLMKYDPATKQVTVLLGNL----SFPNGVALSEDGNYILLAE--TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  163 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~----~~pnGia~spdg~~lyva~--~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d  163 (268)
                      |.+.+++..  ..+.+....    ..+.-.++++||+.+.+..  .....+++...++.    ...+... ...-.-.+|
T Consensus         2 G~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~~~g-~~l~~PS~d   74 (253)
T PF10647_consen    2 GQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPVLTG-GSLTRPSWD   74 (253)
T ss_pred             CcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceeeccC-Ccccccccc
Confidence            566676543  334433222    2466799999998776655  45668888876542    1221111 122234889


Q ss_pred             CCCCEEEEEecCC
Q 024436          164 PRGGFWVGIHSRR  176 (268)
Q Consensus       164 ~dG~l~va~~~~~  176 (268)
                      ++|.+|+......
T Consensus        75 ~~g~~W~v~~~~~   87 (253)
T PF10647_consen   75 PDGWVWTVDDGSG   87 (253)
T ss_pred             CCCCEEEEEcCCC
Confidence            9999999988654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=86.91  E-value=9.6  Score=33.91  Aligned_cols=141  Identities=15%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeE----E---EEEEcC------------CC-------CC------eeEEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRW----L---HFARTS------------PN-------RN------HISVI   83 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~----~---~~~~~~------------~~-------~~------~~~~~   83 (268)
                      --++.++.+|+.+.+.--|+.+..|..+.+.+    +   .+....            |.       ++      |+.++
T Consensus       184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~  263 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF  263 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence            45678899999777665688888776653211    0   010000            00       11      22232


Q ss_pred             -eecCCcceEEEEeCCC-----------CeEEEeecCCCCcce------EEEccCCCEEEEEecCCcEEEEEEccCCCCC
Q 024436           84 -LSGDKTGRLMKYDPAT-----------KQVTVLLGNLSFPNG------VALSEDGNYILLAETTSCRILRYWLKTSKAG  145 (268)
Q Consensus        84 -~~~~~~g~v~~~d~~~-----------~~~~~~~~~~~~pnG------ia~spdg~~lyva~~~~~~I~~~~~~~~~~g  145 (268)
                       ++....++|..+.|..           ...+.+...+.+|++      .+|+|-++.| +.....+.|++|+++.....
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l-a~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML-ALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH-hhccCCCcEEEEECCCCCCc
Confidence             3555677888888721           011223455677773      5777888744 56667789999999853221


Q ss_pred             ceeEEEe-C-CCCCCceEEcCCCCEEEEEecCCC
Q 024436          146 TIEIVAQ-L-PGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       146 ~~~~~~~-l-~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      ....+.. . ....+..++..||.+.++......
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            1222221 2 235678899999998888877663

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.87  E-value=22  Score=31.55  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             EeecCCcceEEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEE-EEccCCCCCceeEEEeC--CCC
Q 024436           83 ILSGDKTGRLMKYDPATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILR-YWLKTSKAGTIEIVAQL--PGF  156 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~-~~~~~~~~g~~~~~~~l--~g~  156 (268)
                      .+.+.+.|.|...|....+.   ..+..+..--..++++-+|. +..+.+..+.+.| |+...+.+  ...+.+.  +..
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~--l~E~RRG~d~A~  228 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL--LQELRRGVDRAD  228 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE--eeeeecCCchhe
Confidence            34666778888877764333   33444555567899999995 6677777786555 77654321  2222221  112


Q ss_pred             CCceEEcCCCCEEEEEecCCC
Q 024436          157 PDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~~~~~  177 (268)
                      --.|++.++..+..+....++
T Consensus       229 iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCe
Confidence            346888888765444444443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.72  E-value=35  Score=33.80  Aligned_cols=145  Identities=19%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             hcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC------------CeEEEEEEcCCCC-CeeEEEeec
Q 024436           20 SSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ------------RRWLHFARTSPNR-NHISVILSG   86 (268)
Q Consensus        20 ~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g------------~~~~~~~~~~~~~-~~~~~~~~~   86 (268)
                      ..++++++++-+   ...+-.|-|.++.++++..+|.+..++...            ..|..  ..+|+. .++.  ...
T Consensus       402 ~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi--~~~pD~~g~vT--~sa  474 (888)
T KOG0306|consen  402 DTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI--SLSPDNKGFVT--GSA  474 (888)
T ss_pred             cCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee--eecCCCCceEE--ecC
Confidence            347799999877   577788999999888898899888776432            11211  112221 1111  111


Q ss_pred             CCcceEEEE----e-CCCC-eEEEe--ecCCCCc---ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC
Q 024436           87 DKTGRLMKY----D-PATK-QVTVL--LGNLSFP---NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG  155 (268)
Q Consensus        87 ~~~g~v~~~----d-~~~~-~~~~~--~~~~~~p---nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g  155 (268)
                      +.+-.+|-+    + |.+. ++-.+  ...+..+   -.+.+||||++|-|+ -.++++.+|-+|.     ..-|..|.|
T Consensus       475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDt-----lKFflsLYG  548 (888)
T KOG0306|consen  475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDT-----LKFFLSLYG  548 (888)
T ss_pred             CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecc-----eeeeeeecc
Confidence            222222211    1 1111 10000  0112233   368999999976555 5778999998874     333333322


Q ss_pred             --CC-CceEEcCCCCEEEEEecCCC
Q 024436          156 --FP-DNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       156 --~P-dgia~d~dG~l~va~~~~~~  177 (268)
                        .| -.|.+.+|+++.+++....+
T Consensus       549 HkLPV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  549 HKLPVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             cccceeEEeccCCcCeEEeccCCCc
Confidence              33 46777789999998876654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.47  E-value=4  Score=41.52  Aligned_cols=158  Identities=21%  Similarity=0.245  Sum_probs=87.9

Q ss_pred             CcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436           35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQ-  101 (268)
Q Consensus        35 ~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  101 (268)
                      .-.|+.|.+... ++.++.++|.|+.||.+... +.+.-           .+=++..-+.+.....+|+...+|.+..+ 
T Consensus       118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p  196 (1049)
T KOG0307|consen  118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP  196 (1049)
T ss_pred             ceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence            456788888655 77788889999999876421 11111           01111111222344567788888887332 


Q ss_pred             EEEeecC--CCCcceEEEccCCCEEEEEecCCc---EEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCC-CEEEEEec
Q 024436          102 VTVLLGN--LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRG-GFWVGIHS  174 (268)
Q Consensus       102 ~~~~~~~--~~~pnGia~spdg~~lyva~~~~~---~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG-~l~va~~~  174 (268)
                      +..+.+.  -...++|+|.||..+-.++.+..+   .|..||+..... ...++. +-. ..-.+.+.+.+ ++.+++..
T Consensus       197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~-GilslsWc~~D~~lllSsgk  274 (1049)
T KOG0307|consen  197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQR-GILSLSWCPQDPRLLLSSGK  274 (1049)
T ss_pred             ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhccccc-ceeeeccCCCCchhhhcccC
Confidence            2222221  134679999999865444444433   677777652110 111221 111 23455666655 67776665


Q ss_pred             CCCcceeeeEeeCccceeeeecccc
Q 024436          175 RRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       175 ~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      .+ +++-|   .+-+|+++..++..
T Consensus       275 D~-~ii~w---N~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  275 DN-RIICW---NPNTGEVLGELPAQ  295 (1049)
T ss_pred             CC-CeeEe---cCCCceEeeecCCC
Confidence            54 44433   56789999998874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=86.42  E-value=4.8  Score=38.16  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=58.8

Q ss_pred             cceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeC-CCCCCceEEc
Q 024436           89 TGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRS  163 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d  163 (268)
                      +-+.|.+....++.+.+  .+. .+.|-+-++|.|+++.++.-.  .+.+.-||.+-.   ........ ......+.+|
T Consensus       471 tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWD  546 (698)
T KOG2314|consen  471 TVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWD  546 (698)
T ss_pred             ceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceEC
Confidence            34666666543443332  222 678999999999988887654  567777777621   11111111 1245689999


Q ss_pred             CCCCEEEEEecCCC-cceeeeEeeCccceeee
Q 024436          164 PRGGFWVGIHSRRK-GISKLVLSFPWIGNVLI  194 (268)
Q Consensus       164 ~dG~l~va~~~~~~-~~~~~v~~~~~~g~~l~  194 (268)
                      |.|++.+++..... ++..--..++..|++++
T Consensus       547 PtGRYvvT~ss~wrhk~d~GYri~tfqGrll~  578 (698)
T KOG2314|consen  547 PTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK  578 (698)
T ss_pred             CCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence            99998887654321 22111233555666554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=86.41  E-value=1.1  Score=43.51  Aligned_cols=102  Identities=11%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc-EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436           90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  168 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~-~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l  168 (268)
                      .+||.+..- +.+..+.++--.-..++|+|.++++.-..+... -|-+|++.-...+....   +......+++.+||.+
T Consensus       104 ~kVw~la~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk---iss~Vsav~fsEdgSY  179 (1080)
T KOG1408|consen  104 SKVWSLAFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK---ISSVVSAVAFSEDGSY  179 (1080)
T ss_pred             ceeeeeccc-cchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc---cceeEEEEEEccCCce
Confidence            345544333 333344444444568999999986642332222 33345443111111111   2234567899999999


Q ss_pred             EEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          169 WVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       169 ~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      +|+....+-+++    .....+|.-..||++
T Consensus       180 fvT~gnrHvk~w----yl~~~~KykdpiPl~  206 (1080)
T KOG1408|consen  180 FVTSGNRHVKLW----YLQIQSKYKDPIPLP  206 (1080)
T ss_pred             eeeeeeeeEEEE----EeeccccccCCcccc
Confidence            998877664322    223334555556554

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=86.30  E-value=1.9  Score=25.45  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=18.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDG   55 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g   55 (268)
                      ..|.+|++|++|++|+++..++
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeecC
Confidence            4699999999999888876554

SBBP stands for Seven Bladed Beta Propeller.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=86.27  E-value=15  Score=32.27  Aligned_cols=79  Identities=11%  Similarity=0.042  Sum_probs=51.5

Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP  187 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~  187 (268)
                      .-|-+.|+|||. .+++....+.|.-|...+.    .+.+..+   .|-.-++.+..||+..+++.... ++..|   ..
T Consensus        49 eI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gd----ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-~v~~w---D~  119 (338)
T KOG0265|consen   49 EIYTIKFHPDGS-CFASGGSDRAIVLWNVYGD----CENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-TVRGW---DA  119 (338)
T ss_pred             eEEEEEECCCCC-eEeecCCcceEEEEecccc----ccceeeeccccceeEeeeeccCCCEEEEecCCc-eEEEE---ec
Confidence            346799999995 8889889999999997652    2333222   23456777888888777776654 33322   23


Q ss_pred             ccceeeeeccc
Q 024436          188 WIGNVLIKLPI  198 (268)
Q Consensus       188 ~~g~~l~~i~~  198 (268)
                      .+|+.+++...
T Consensus       120 ~tG~~~rk~k~  130 (338)
T KOG0265|consen  120 ETGKRIRKHKG  130 (338)
T ss_pred             ccceeeehhcc
Confidence            45666655544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.27  E-value=30  Score=32.70  Aligned_cols=136  Identities=16%  Similarity=0.115  Sum_probs=82.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEE----EEc-----CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHF----ART-----SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~-~~~----~~~-----~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      +.--|+.+.+|++.+.++-+|+++..++...... ..+    +..     .|-..-+.+...+..+.+|..+|..+|+..
T Consensus       302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i  381 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI  381 (484)
T ss_pred             ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe
Confidence            4567899999999999998999999988743211 111    110     111112334445567788888998877765


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEEEec
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va~~~  174 (268)
                      ...+....--.|+|++..+.|..+-.. .+.|..|+...     ......+.|   ..=-+++.|||...+....
T Consensus       382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----MKLVAELLGHTSRVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence            555555556689999999888777543 34555555432     112222222   2335677888865444433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=85.84  E-value=27  Score=33.17  Aligned_cols=111  Identities=17%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             EecCCCCCcceEEECCCCCEEEE--EeCCCeEEEEeCCCCeEEEEEEc-------CCCCCeeEEEeecCCcceEEEEeCC
Q 024436           28 YQIEGAIGPESLAFDALGEGPYT--GVSDGRIIKWHQDQRRWLHFART-------SPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        28 i~~~~~~~P~gia~~~dG~~l~~--~~~~g~I~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      +++.+-..-+++.++|+|+-+.+  +..-.++..++.++..+..+...       +|.++++.....+.-.|.+-.+|-.
T Consensus       265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            44443334577888888875544  33356666677777654444221       1222333333333445666667665


Q ss_pred             CCeEEEeecCCCCcc--eEEEccCCCEEEEEecC-----CcEEEEEEccC
Q 024436           99 TKQVTVLLGNLSFPN--GVALSEDGNYILLAETT-----SCRILRYWLKT  141 (268)
Q Consensus        99 ~~~~~~~~~~~~~pn--Gia~spdg~~lyva~~~-----~~~I~~~~~~~  141 (268)
                      +.+   ....+..+|  =..|+|||++++.+-+.     ++.+..|...|
T Consensus       345 n~K---~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  345 NRK---LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             chh---hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            322   222233333  47899999988877654     23444555555

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=85.35  E-value=0.96  Score=23.73  Aligned_cols=17  Identities=24%  Similarity=0.559  Sum_probs=13.1

Q ss_pred             CCceEEcCCCCEEEEEe
Q 024436          157 PDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~  173 (268)
                      ...|..|++|+||++..
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            34688999999999874

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=85.08  E-value=35  Score=32.28  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCC----Ce-eEEEeecCCcceEEEEeCCCCeE--EEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNR----NH-ISVILSGDKTGRLMKYDPATKQV--TVL  105 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~----~~-~~~~~~~~~~g~v~~~d~~~~~~--~~~  105 (268)
                      .....+...++|+.+.++..+|.|..+|..... ..........+    .| ...+..+...+.|...|-...+.  +.+
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~  297 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTL  297 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhh
Confidence            578999999999999999999999999864321 11111100111    00 11233455667777776643221  112


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ..+-..--|+.+++|++ .+.+....+++..|+...
T Consensus       298 ~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             hcccceeeeeEECCCCC-eeccCCCccceEeccCCC
Confidence            22233345999999997 446777788999999843

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.04  E-value=22  Score=34.48  Aligned_cols=138  Identities=18%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEee-cC---CcceEEEEeCCCCeEEEe
Q 024436           44 LGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNR---------NHISVILS-GD---KTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        44 dG~~l~~~~~~-----g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~-~~---~~g~v~~~d~~~~~~~~~  105 (268)
                      +|.+|+++-.+     ..|.++++....|...+.....+         ..++.+.. ..   .-..+.+|||.+++++.+
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            56656654322     34677888877776654322211         12222211 11   235789999999988876


Q ss_pred             ecCC--CCcceEEEccCCCEEEEEecCCc-----EEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecCC
Q 024436          106 LGNL--SFPNGVALSEDGNYILLAETTSC-----RILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~~--~~pnGia~spdg~~lyva~~~~~-----~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..-.  ..-.|++.- ++ .||+....++     +|-+|++...   ....+...  +...-|++.. ++.+|+.....+
T Consensus       460 ~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~  533 (571)
T KOG4441|consen  460 APMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDG  533 (571)
T ss_pred             CCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCCC---ceeEcccCccccccccEEEE-CCEEEEEecccC
Confidence            5322  223466666 34 6999866443     4777887642   23333322  2223455654 567777554433


Q ss_pred             CcceeeeEeeC
Q 024436          177 KGISKLVLSFP  187 (268)
Q Consensus       177 ~~~~~~v~~~~  187 (268)
                      ...+.-|..|.
T Consensus       534 ~~~l~~ve~yd  544 (571)
T KOG4441|consen  534 NNNLNTVECYD  544 (571)
T ss_pred             ccccceeEEcC
Confidence            33444455543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=84.20  E-value=32  Score=31.09  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEc---------CCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFART---------SPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+.+|.... ..-..++.+|+.++.+++-.|++-+.|+.. |.........         +-++.|+   .++.=.|.|.
T Consensus        56 S~~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlL---ATGdmsG~v~  131 (399)
T KOG0296|consen   56 SLVTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLL---ATGDMSGKVL  131 (399)
T ss_pred             ceeehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEE---EecCCCccEE
Confidence            555666553 467889999988888888888777777643 3321111100         0011111   2334456676


Q ss_pred             EEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC-CceEEcCCCCEEEE
Q 024436           94 KYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP-DNIKRSPRGGFWVG  171 (268)
Q Consensus        94 ~~d~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P-dgia~d~dG~l~va  171 (268)
                      .+..++|..+.... ...--.=+.+.|-+. ++.+.+..+.+|.|.+..+  +...++.. ++.| .-=.+-|||+....
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~G-h~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSG-HNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecC-CCCCcccccccCCCceEEE
Confidence            66666665543332 222122367889875 7778889999999998742  22233321 1112 12245577876666


Q ss_pred             EecCCCcceeeeEeeCccceeeeecc
Q 024436          172 IHSRRKGISKLVLSFPWIGNVLIKLP  197 (268)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~g~~l~~i~  197 (268)
                      ....+ .+..|   .+++|+.+.++.
T Consensus       208 gy~dg-ti~~W---n~ktg~p~~~~~  229 (399)
T KOG0296|consen  208 GYDDG-TIIVW---NPKTGQPLHKIT  229 (399)
T ss_pred             EecCc-eEEEE---ecCCCceeEEec
Confidence            66655 33333   578888888776

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=84.10  E-value=43  Score=32.58  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCee-------EEEeecCCcceEEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHI-------SVILSGDKTGRLMKY   95 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~-------~~~~~~~~~g~v~~~   95 (268)
                      +..+|..|....-|++++.+.|+ +++...+|.|.-||+- ++..... ...++.-|-       ....-+-.+|.++.+
T Consensus        60 ~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~  137 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDF  137 (691)
T ss_pred             eeEEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence            44456666667899999997777 7887788999888863 3321111 000110010       011111234567777


Q ss_pred             eCCCCeEEE---eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           96 DPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        96 d~~~~~~~~---~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +...++++-   +..+-...-.+.|+|++..| ++.+..+.|..||...
T Consensus       138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKS  185 (691)
T ss_pred             ecCCceEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCC
Confidence            666555532   22222445579999999655 6788889999999874

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=83.96  E-value=5.7  Score=23.81  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             CCcc-eEEEEeCCCCeE-EEeecCCCCcceEEEcc
Q 024436           87 DKTG-RLMKYDPATKQV-TVLLGNLSFPNGVALSE  119 (268)
Q Consensus        87 ~~~g-~v~~~d~~~~~~-~~~~~~~~~pnGia~sp  119 (268)
                      .... .|.+.+.++... ..+.+.+..|+|||+++
T Consensus         8 ~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    8 WSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            3444 666666654333 33456789999999875

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=83.70  E-value=26  Score=32.20  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             cceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          112 PNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      -..|-+|=|.++|||+.+..+-|+.||+.++
T Consensus       314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP  344 (476)
T KOG0918|consen  314 ITDILISLDDRFLYVSNWLHGDIRQYDISDP  344 (476)
T ss_pred             hheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence            3578999999999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=83.65  E-value=21  Score=33.56  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=56.8

Q ss_pred             CcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeE-EEEE--EcCCCC--------CeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRW-LHFA--RTSPNR--------NHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~-~~~~--~~~~~~--------~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .-+-+.+++-.+.+. +...+|.|..||..|... ..+.  ...|-+        +-+..  .-.=+-+|+.||....+.
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v--sVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV--SVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE--EecccceEEEeecccccc
Confidence            334555666544443 344568888887776521 1111  111211        11111  112234788888764332


Q ss_pred             E-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          103 T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       103 ~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      . .+... .--.-++|+++|. ..++.+..++|+.||+.+.
T Consensus       244 ~~~l~y~-~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  244 TDRLTYS-HPLSTVAFSECGT-YLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             cceeeec-CCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence            2 22211 1124799999995 6688889999999999864

>PRK13616 lipoprotein LpqB; Provisional

Probab=83.56  E-value=46  Score=32.43  Aligned_cols=78  Identities=21%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             cceEEEEeCCCCeEEEee---cCCCCcceEEEccCCCEEEEEec-------CCcEEEEEEccCCCCCceeEEEeCCCCCC
Q 024436           89 TGRLMKYDPATKQVTVLL---GNLSFPNGVALSEDGNYILLAET-------TSCRILRYWLKTSKAGTIEIVAQLPGFPD  158 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~---~~~~~pnGia~spdg~~lyva~~-------~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd  158 (268)
                      .|++.+++..  ..+.+.   .....+...+++|||+.+.+...       ...+||+.+..+.    ...+..-. .-.
T Consensus       328 ~G~l~~~~~~--~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----~~~lt~g~-~~t  400 (591)
T PRK13616        328 DGSLVSVDGQ--GVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----AVQVLEGH-SLT  400 (591)
T ss_pred             CCeEEEecCC--CeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----ceeeecCC-CCC
Confidence            5667776543  233322   23346778999999997766552       2347888886432    12222211 123


Q ss_pred             ceEEcCCC-CEEEEEe
Q 024436          159 NIKRSPRG-GFWVGIH  173 (268)
Q Consensus       159 gia~d~dG-~l~va~~  173 (268)
                      .-.+++|| .+|....
T Consensus       401 ~PsWspDG~~lw~v~d  416 (591)
T PRK13616        401 RPSWSLDADAVWVVVD  416 (591)
T ss_pred             CceECCCCCceEEEec
Confidence            45888886 4777654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=83.21  E-value=13  Score=31.54  Aligned_cols=139  Identities=13%  Similarity=0.040  Sum_probs=61.9

Q ss_pred             EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC---CCCeEEEE-EEcCCC--CCeeEEEeecCCcceEEEEeCCCC
Q 024436           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ---DQRRWLHF-ARTSPN--RNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~---~g~~~~~~-~~~~~~--~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      +|..+ +.+-.-|++.|+|++|++.  ++.+++-.+   .+..+... ...+.+  ..|.  .+.-.++|.||.++++ |
T Consensus        28 ~iG~g-w~~~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~--~i~~d~~G~LYaV~~~-G  101 (229)
T PF14517_consen   28 TIGSG-WNNFRDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK--FIFFDPTGVLYAVTPD-G  101 (229)
T ss_dssp             EEESS--TT-SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-S-GGG-S--EEEE-TTS-EEEEETT--
T ss_pred             hcCcc-ccccceEEEcCCceEEEEE--CCceEEecCCccCcccccccCcccccCccccee--EEEecCCccEEEeccc-c
Confidence            34442 5567789999999977775  337777632   22211100 000111  0111  1122455666666554 4


Q ss_pred             eEEE------------------e-ecCCCCcceEEEccCCCEEEEEecCCcEEEEE-EccCCC---CCceeEEEeC-CCC
Q 024436          101 QVTV------------------L-LGNLSFPNGVALSEDGNYILLAETTSCRILRY-WLKTSK---AGTIEIVAQL-PGF  156 (268)
Q Consensus       101 ~~~~------------------~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~-~~~~~~---~g~~~~~~~l-~g~  156 (268)
                      ++..                  + ..+-...+-|-+.|+| .||.-+. ++++++. ++++..   +.....+..- -..
T Consensus       102 ~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G-vLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~  179 (229)
T PF14517_consen  102 KLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG-VLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDS  179 (229)
T ss_dssp             EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-EEEESSSGGG
T ss_pred             ceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc-cEEEEcC-CCceEEeCCCCCCCCccccccceeccCCccc
Confidence            4322                  2 1222334568889999 5998874 4578877 444321   1111222221 124


Q ss_pred             CCceEEcCCCCEEEEEe
Q 024436          157 PDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~  173 (268)
                      +.-|...++|+||....
T Consensus       180 ~~~i~~~~~g~L~~V~~  196 (229)
T PF14517_consen  180 FHFIFFSPDGNLWAVKS  196 (229)
T ss_dssp             EEEEEE-TTS-EEEE-E
T ss_pred             ceEEeeCCCCcEEEEec
Confidence            77899999999998833

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=83.10  E-value=4.1  Score=39.31  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             eEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC----CCCCceEEcCC
Q 024436           91 RLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP----GFPDNIKRSPR  165 (268)
Q Consensus        91 ~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~----g~Pdgia~d~d  165 (268)
                      .|-.||..+++.. .+..+-..--||||||||+ ...+-...++|.+|.+...    .+.+.+.+    +.-.-|.+.-|
T Consensus       701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~----e~pv~Eg~gpvgtRgARi~wacd  775 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSR----EQPVYEGKGPVGTRGARILWACD  775 (1012)
T ss_pred             eeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCC----CCccccCCCCccCcceeEEEEec
Confidence            4555555544432 3444445566999999997 5567778899999987631    12222222    12234566667


Q ss_pred             CCEEEEE
Q 024436          166 GGFWVGI  172 (268)
Q Consensus       166 G~l~va~  172 (268)
                      |++.++.
T Consensus       776 gr~viv~  782 (1012)
T KOG1445|consen  776 GRIVIVV  782 (1012)
T ss_pred             CcEEEEe
Confidence            7754433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=82.35  E-value=34  Score=30.10  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             CCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCCC--------------CCeeEEEeecCCcceEEEEeCC
Q 024436           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPN--------------RNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      +--+.|+|..++.-++++. .||.|..+|.............|.              .+|+..+..  ....|..+|-.
T Consensus       197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~V~iLDiR  274 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNKVVILDIR  274 (364)
T ss_pred             cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCceEEEEEec
Confidence            4678899999887777766 478888887643322222221111              123433322  23345555543


Q ss_pred             C--CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           99 T--KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        99 ~--~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .  .-+..+..+-..-|||+|.|..+.-..+.........||++.
T Consensus       275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            1  123334455667799999999877778888888999999873

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=81.33  E-value=44  Score=30.64  Aligned_cols=117  Identities=13%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             EEEEecCCCCCcceEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEE----------E---EcCCCCC------------
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGP-YTGVSDGRIIKWHQDQRRWLHF----------A---RTSPNRN------------   78 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l-~~~~~~g~I~~~~~~g~~~~~~----------~---~~~~~~~------------   78 (268)
                      +.++.-+......|..++++.+.+ |+ .+..++.+++.+......+          .   ..+....            
T Consensus        72 i~QLTdg~g~~~~g~~~s~~~~~~~Yv-~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~  150 (386)
T PF14583_consen   72 ITQLTDGPGDNTFGGFLSPDDRALYYV-KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWK  150 (386)
T ss_dssp             EEE---SS-B-TTT-EE-TTSSEEEEE-ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG--
T ss_pred             EEECccCCCCCccceEEecCCCeEEEE-ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhcc
Confidence            333433322233467777877765 44 3456888888765421111          1   0111111            


Q ss_pred             ------eeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCC-EE-EEEecC----CcEEEEEEccCC
Q 024436           79 ------HISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN-YI-LLAETT----SCRILRYWLKTS  142 (268)
Q Consensus        79 ------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~-~l-yva~~~----~~~I~~~~~~~~  142 (268)
                            ++.++++..+..+|+.+|.++|+.+++.+.-.+-+.+.++|..- .| |+=|..    ..|||..+.+|.
T Consensus       151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             ---SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence                  12233445677899999999999999988878888999998643 33 333332    358999998874

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.22  E-value=29  Score=31.28  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CC---CCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc-cce
Q 024436          117 LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP---GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGN  191 (268)
Q Consensus       117 ~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~---g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~-~g~  191 (268)
                      ..-|| .+|+. ...++|+.++.+++.    ..+.. +.   ....+-.+..+|++|++.+...      +-++.. +|+
T Consensus        65 ~~~dg-~v~~~-~~~G~i~A~d~~~g~----~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~------~y~ld~~~G~  132 (370)
T COG1520          65 ADGDG-TVYVG-TRDGNIFALNPDTGL----VKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGK------LYALDASTGT  132 (370)
T ss_pred             EeeCC-eEEEe-cCCCcEEEEeCCCCc----EEecccCcCcceeccCceEEeCCeEEEecccce------EEEEECCCCc
Confidence            44466 47776 445688888877532    11211 11   1222223333899999988773      444443 677


Q ss_pred             eeeecccc
Q 024436          192 VLIKLPID  199 (268)
Q Consensus       192 ~l~~i~~~  199 (268)
                      .+...+.+
T Consensus       133 ~~W~~~~~  140 (370)
T COG1520         133 LVWSRNVG  140 (370)
T ss_pred             EEEEEecC
Confidence            66555444

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=80.82  E-value=3.6  Score=26.53  Aligned_cols=30  Identities=17%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             cceEEECCCCCEEEEEeC-------CCeEEEEeCCCC
Q 024436           36 PESLAFDALGEGPYTGVS-------DGRIIKWHQDQR   65 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~-------~g~I~~~~~~g~   65 (268)
                      .+++++.|||++++++..       +..|.|++++|.
T Consensus         3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs   39 (55)
T TIGR02608         3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS   39 (55)
T ss_pred             eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence            467899999998887642       344777777776

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.77  E-value=5.3  Score=23.12  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=14.3

Q ss_pred             cceEEEccCCCEEEEEecCC
Q 024436          112 PNGVALSEDGNYILLAETTS  131 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~  131 (268)
                      -...+|||||++||++....
T Consensus        11 ~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen   11 DGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             EEEEEE-TTSSEEEEEEECT
T ss_pred             ccCEEEecCCCEEEEEecCC
Confidence            34689999999988875443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PHA02713 hypothetical protein; Provisional

Probab=80.63  E-value=42  Score=32.38  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             ceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEecCC------cEEEEEEccC-CCCCceeEEEeCCC--CC
Q 024436           90 GRLMKYDPATKQVTVLLGNLSF---PNGVALSEDGNYILLAETTS------CRILRYWLKT-SKAGTIEIVAQLPG--FP  157 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~~~---pnGia~spdg~~lyva~~~~------~~I~~~~~~~-~~~g~~~~~~~l~g--~P  157 (268)
                      ..+.+|||.+.+++.+.. +..   ..+++.- +| .|||....+      ..+.+|+++. .   ..+.+..+|.  .-
T Consensus       432 ~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~  505 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSA  505 (557)
T ss_pred             ceEEEECCCCCeEeecCC-CCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCccccc
Confidence            468999999888876653 222   2355544 45 599986432      3567888863 2   2333333331  12


Q ss_pred             CceEEcCCCCEEEEEe
Q 024436          158 DNIKRSPRGGFWVGIH  173 (268)
Q Consensus       158 dgia~d~dG~l~va~~  173 (268)
                      .|+++- +|+||+...
T Consensus       506 ~~~~~~-~~~iyv~Gg  520 (557)
T PHA02713        506 LHTILH-DNTIMMLHC  520 (557)
T ss_pred             ceeEEE-CCEEEEEee
Confidence            355543 678988554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=80.54  E-value=15  Score=32.00  Aligned_cols=32  Identities=22%  Similarity=0.075  Sum_probs=21.0

Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+...-++||||+..|-+++ .++.|.+||+-|
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~-S~G~i~vfdl~g   74 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAE-STGTIRVFDLMG   74 (282)
T ss_pred             CchheEEEECCCCcEEEEEc-CCCeEEEEeccc
Confidence            33445678888886555554 557788887765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=80.49  E-value=62  Score=31.87  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             eEEEccCC-----CEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEecCCCcceeeeEeeC
Q 024436          114 GVALSEDG-----NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIHSRRKGISKLVLSFP  187 (268)
Q Consensus       114 Gia~spdg-----~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~~~~~~~~~~v~~~~  187 (268)
                      +|+++|..     +.+-|.|+ +..+.-|.++|...+..+   .+.--|.-|..-++|.+ .++.....      +..|+
T Consensus       181 si~~~p~sg~G~~di~aV~DW-~qTLSFy~LsG~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~------L~~fT  250 (1081)
T KOG1538|consen  181 SICWNPSSGEGRNDILAVADW-GQTLSFYQLSGKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQ------LSLFT  250 (1081)
T ss_pred             EEEecCCCCCCccceEEEEec-cceeEEEEecceeecccc---cCCCCchhheeccCCcEEEEccCCCc------eEEEe
Confidence            78998853     36777774 477888888875544322   24345888888889975 44433332      55678


Q ss_pred             ccceeeeeccc
Q 024436          188 WIGNVLIKLPI  198 (268)
Q Consensus       188 ~~g~~l~~i~~  198 (268)
                      ..|-.+..+..
T Consensus       251 R~GvrLGTvg~  261 (1081)
T KOG1538|consen  251 RDGVRLGTVGE  261 (1081)
T ss_pred             ecCeEEeeccc
Confidence            77777776543

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=80.41  E-value=23  Score=30.61  Aligned_cols=40  Identities=25%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD   63 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~   63 (268)
                      +|.|+.+.++.  +.||+..+.+-..+|...++-.||++..+
T Consensus       195 ~k~vR~fk~~t--QTEG~VaDdEtG~LYIaeEdvaiWK~~Ae  234 (364)
T COG4247         195 TKLVRQFKIPT--QTEGMVADDETGFLYIAEEDVAIWKYEAE  234 (364)
T ss_pred             ceeeEeeecCC--cccceeeccccceEEEeeccceeeecccC
Confidence            45677777776  78888888775557777778788887543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.39  E-value=46  Score=30.33  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             cCCCCCeeEEEe--ecCCcceEEEEeCCCCeEEEeecCCCC--cceEEEccCCCEEEEEecC----------CcEEEEEE
Q 024436           73 TSPNRNHISVIL--SGDKTGRLMKYDPATKQVTVLLGNLSF--PNGVALSEDGNYILLAETT----------SCRILRYW  138 (268)
Q Consensus        73 ~~~~~~~~~~~~--~~~~~g~v~~~d~~~~~~~~~~~~~~~--pnGia~spdg~~lyva~~~----------~~~I~~~~  138 (268)
                      .++++.++.-.+  .+.....++.+|.++|+...  +.+..  ..+++|.+|++.+|.+...          ..+|++++
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            345555443222  22334568889998885432  22222  2349999999988887643          34688888


Q ss_pred             ccCCCCCceeEEEeCCCCCC---ceEEcCCCCE-EEEEecC
Q 024436          139 LKTSKAGTIEIVAQLPGFPD---NIKRSPRGGF-WVGIHSR  175 (268)
Q Consensus       139 ~~~~~~g~~~~~~~l~g~Pd---gia~d~dG~l-~va~~~~  175 (268)
                      +..+......+|.. +..+-   ++..+.||+. ++.....
T Consensus       209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~  248 (414)
T PF02897_consen  209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSG  248 (414)
T ss_dssp             TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred             CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcc
Confidence            86432222233332 21232   6788899984 4444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=80.15  E-value=27  Score=33.92  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             CCcceEEE-CCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE-----EcC-CCC--Ce-------eEEEeecCCcceEEE
Q 024436           34 IGPESLAF-DALGEGPYTGVSDGRIIKWHQDQRR---WLHFA-----RTS-PNR--NH-------ISVILSGDKTGRLMK   94 (268)
Q Consensus        34 ~~P~gia~-~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~-----~~~-~~~--~~-------~~~~~~~~~~g~v~~   94 (268)
                      .+-.++|. .++..+++++--|++|..|+-+...   ...+.     ..+ +.+  -|       ...+..+...+.|..
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL  197 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence            35667777 6777766677779999999876321   11110     011 111  12       234456666677888


Q ss_pred             EeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           95 YDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        95 ~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      |||.+++ +..+.++-..-.-+.+++||+++. +.+..+.|..|++..
T Consensus       198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQ  244 (735)
T ss_pred             eccccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccc
Confidence            9998754 344554445556899999998775 667789999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-21
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		5e-21
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		5e-20

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 48/216 (22%)
Query: 54  DGRIIKW----HQDQRRWL-HFARTS---PNRNHISVILSGDKTGRLMKYDPATKQVTVL 105
           DG   KW      DQR  + +F   S    +R    ++ + DKTGRL+KYDP+TK+ T+L
Sbjct: 121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180
Query: 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165
           L  L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  
Sbjct: 181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239
Query: 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRI 220
           G FWV                                  SS  +L GN         ++ 
Sbjct: 240 GHFWV----------------------------------SSSEELDGNMHGRVDPKGIKF 265
Query: 221 SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
            E GN+LE++            +++E DG L+IG++
Sbjct: 266 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 48/216 (22%)
Query: 54  DGRIIKW----HQDQRRWL-HFARTS---PNRNHISVILSGDKTGRLMKYDPATKQVTVL 105
           DG   KW      DQR  + +F   S    +R    ++ + DKTGRL+KYDP+TK+ T+L
Sbjct: 112 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 171
Query: 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165
           L  L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  
Sbjct: 172 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 230
Query: 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRI 220
           G FWV                                  SS  +L GN         ++ 
Sbjct: 231 GHFWV----------------------------------SSSEELDGNMHGRVDPKGIKF 256
Query: 221 SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
            E GN+LE++            +++E DG L+IG++
Sbjct: 257 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 292

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 48/216 (22%)
Query: 54  DGRIIKW----HQDQRRWL-HFARTS---PNRNHISVILSGDKTGRLMKYDPATKQVTVL 105
           DG   KW      DQR  + +F   S    +R    +  + DKTGRL KYDP+TK+ T+L
Sbjct: 121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLL 180
Query: 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165
              L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  
Sbjct: 181 XKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239
Query: 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRI 220
           G FWV                                  SS  +L GN         ++ 
Sbjct: 240 GHFWV----------------------------------SSSEELDGNXHGRVDPKGIKF 265
Query: 221 SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV 256
            E GN+LE++            +++E DG L+IG++
Sbjct: 266 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	2e-47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	6e-25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-10
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	6e-07
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	4e-10
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	7e-06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	2e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	3e-04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	1e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	5e-05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	1e-04
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	2e-04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	4e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	8e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  159 bits (403), Expect = 2e-47
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 30/194 (15%)

Query: 75  PNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI 134
            +R    ++ + DKTGRL+KYDP+TK+ T+LL  L  P G  +S D +++L+AE  S +I
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209

Query: 135 LRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLI 194
           ++YWL+  K GT E++ ++P  P NIKR+  G FWV       G     +          
Sbjct: 210 VKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD--------- 259

Query: 195 KLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIG 254
                                  ++  E GN+LE++            +++E DG L+IG
Sbjct: 260 --------------------PKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIG 299

Query: 255 SVNMPYAGLYNYSS 268
           ++     G+  Y  
Sbjct: 300 TLFHGSVGILVYDK 313

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  101 bits (251), Expect = 6e-25
 Identities = 41/193 (21%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 69  HFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE 128
           +             +  G     +  Y P    V V+     F NG+ +S DG Y+ +AE
Sbjct: 182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAE 239

Query: 129 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFP 187
             + +I  Y    +   T   V       DNI   P  G  WVG H     I       P
Sbjct: 240 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299

Query: 188 WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK 247
                      ++++I   L             SE+  V  +  E G  + +  +     
Sbjct: 300 --------PGSEVLRIQDIL-------------SEEPKVTVVYAENGTVL-QGSTVAAVY 337

Query: 248 DGNLWIGSVNMPY 260
            G L IG+V    
Sbjct: 338 KGKLLIGTVFHKA 350

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 87  DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN----YILLAETTSCRILRYWLKTS 142
           +K G +  +     Q+  +     FPNG+A+    +     +++AET + ++  Y +K  
Sbjct: 150 EKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP 208

Query: 143 KAGT-----IEIVAQLPGFPDNIKRSPRGGFWVGIH 173
                      I     G  D +         V   
Sbjct: 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 31/137 (22%)

Query: 44  LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT 103
             EGP           + ++   ++             V ++G   G +++ D  T + T
Sbjct: 19  GAEGPV----------FDKNGDFYI---------VAPEVEVNGKPAGEILRIDLKTGKKT 59

Query: 104 VL-----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD 158
           V+      G    P G     D N + +A+     +L      +            G   
Sbjct: 60  VICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTDGTF--EEIAKKDSEGRRM 116

Query: 159 N----IKRSPRGGFWVG 171
                      G  W+ 
Sbjct: 117 QGCNDCAFDYEGNLWIT 133

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 45/191 (23%)

Query: 18  INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGR-IIKWHQDQRRWLHFARTSPN 76
           IN  T+ + +  +     P ++              DGR  + +  D +        + N
Sbjct: 71  INPETKEIKRPFVSHKANPAAIKIHK----------DGRLFVCYLGDFKSTGGIFAATEN 120

Query: 77  RNHISVILSGDK----------------------------TGRLMKYDPATKQVTVLLGN 108
            +++  I+                                 G +    P  + VT ++ N
Sbjct: 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN 180

Query: 109 LSFPNGVALSEDGNYILLAETTSCRILRYWL----KTSKAGTIEIVAQL--PGFPDNIKR 162
           +S  NG+ALS D   + + ETT+ R+ R  L     T +     I         PD+   
Sbjct: 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 240

Query: 163 SPRGGFWVGIH 173
                 +V ++
Sbjct: 241 DSDDNLYVAMY 251

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 34/141 (24%)

Query: 37  ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGD-KTGRLMKY 95
           E        EG            + +  +  L                  D   G + K 
Sbjct: 39  EISKKGLQLEGLN----------FDRQGQ--LFLL---------------DVFEGNIFKI 71

Query: 96  DPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP 154
           +P TK++    + + + P  + + +DG   +            +  T     ++ + +  
Sbjct: 72  NPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-D 130

Query: 155 GFPDN----IKRSPRGGFWVG 171
                    +    +GGF+  
Sbjct: 131 LSTAYCIDDMVFDSKGGFYFT 151

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 73  TSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC 132
               R  I +I     +G +    P   +         FP    L   GN++ ++ T   
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSN---SESVFPAANGLKRFGNFLYVSNTEKM 189

Query: 133 RILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRGGFWV 170
            +LR  + ++ K G  EI  +     D+      G  + 
Sbjct: 190 LLLRIPVDSTDKPGEPEIFVEQTN-IDDFAFDVEGNLYG 227

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 97  PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF 156
            A  ++       +F   +A + DG  I +       I+      +  G  +I A + G 
Sbjct: 19  LAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSI----TPDGNQQIHATVEGK 73

Query: 157 PDNIKRSPRGGFWV 170
              +  +  G    
Sbjct: 74  VSGLAFTSNGDLVA 87

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 89  TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSKAGT 146
              + +  P        + +L  PNG+A S D   + +++T         +     + G 
Sbjct: 168 HHSVYRLPPDGS-PLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226

Query: 147 I---EIVAQL-PGFPDNIKRSPRGGFWVG 171
           +      A +  G PD       G  W  
Sbjct: 227 LHDRRHFASVPDGLPDGFCVDRGGWLWSS 255

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 90  GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE- 148
            R++ +      V VLL   +F NG A+      ++  E     I R        G    
Sbjct: 67  RRVLGWREDGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD----ADGQAHL 120

Query: 149 IVAQLPGFPDN----IKRSPRGGFWVG 171
           +V +  G   N    +  +  G  W  
Sbjct: 121 LVGRYAGKRLNSPNDLIVARDGAIWFT 147

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 19/151 (12%)

Query: 32  GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGD---- 87
                  L   +LG+  +T     +I K  +    +  +    P+     +    +    
Sbjct: 60  PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIW 118

Query: 88  ----KTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142
                  R+ K           L    S+P  + L  D   +   E  +  I R     +
Sbjct: 119 FTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRI----T 173

Query: 143 KAGTIEIVAQLPG---FPDNIKRSPRGGFWV 170
             G +E    LP     P  I     G  W 
Sbjct: 174 NTGKLEEYP-LPTNAAAPVGITSGNDGALWF 203

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 81  SVILSGDKTGRLMKYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWL 139
            V  +  K  ++   D + +     +    +    + +S  G+ I   E  + +I +   
Sbjct: 32  KVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKL-- 88

Query: 140 KTSKAGTIEIVAQLPGF--PDNIKRSPRGGFWV 170
             SK G             P  I     G  W 
Sbjct: 89  --SKKGGFTEYPLPQPDSGPYGITEGLNGDIWF 119

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 17/150 (11%)

Query: 32  GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGD---- 87
                  L   + GE  +T  +  +I +  +       +   +P+     +    +    
Sbjct: 55  PDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGPNGDIW 113

Query: 88  ----KTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142
                  R+ +     K     L    S+P+ + L  D   +   E  +  I R     +
Sbjct: 114 FTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRI----T 168

Query: 143 KAGTIEIVAQLPGF--PDNIKRSPRGGFWV 170
           ++G I           P  I +      W 
Sbjct: 169 ESGDITEFKIPTPASGPVGITKGNDDALWF 198

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 90  GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE- 148
             + +  P    ++  + +   PNG+A    GN  L+++T      RY L     G  E 
Sbjct: 153 RWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNAR--GETEY 208

Query: 149 ---IVAQLPGFPDNIKRSPRGGFWV----GIH 173
                   PG  D ++    G  W     G+H
Sbjct: 209 QGVHFTVEPGKTDGLRVDAGGLIWASAGDGVH 240

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 18  INSSTQGVVQYQIEGAIGPESLAFDALGEGPY-------TGVSDGRIIKWHQDQRRWLHF 70
           I+   + V      G     ++ +    +              +  I+      +     
Sbjct: 164 IDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL 222

Query: 71  ARTSPNRNHISVILSGD------KTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGN 122
            +        +  ++G+        G++ +YD  T++ T L  + +  +   +     GN
Sbjct: 223 TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282

Query: 123 YILLAETTSCRILR--YWLKTSKAGTIEIVAQLPGFPD 158
           Y  +       ILR  Y  KT +  T  IV    G  D
Sbjct: 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKD 320

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 87  DKTGRLMKYDPATKQVTVLLGNLSFPN----GVALSEDGNYILLAETTSCRILR------ 136
                ++ Y+  T Q   +L N +  +       LS D  ++ L  +   ++ R      
Sbjct: 33  SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLE-SDYSKLWRYSYTAT 91

Query: 137 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 168
           Y++     G      +LP     +  SP G  
Sbjct: 92  YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSK 123

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Length = 297

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 88  KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR--YWLKTSKAG 145
             G L    P    V      +   NG+  S D       ++ S  +    Y L+T +  
Sbjct: 128 HQGALYSLFP-DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS 186

Query: 146 TIEIVAQLP---GFPD 158
               V +L      PD
Sbjct: 187 NRRSVYKLEKEEQIPD 202

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 90  GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI 149
             +     +  Q  +    L++P G+A+   G  + +A+  + R+++     +     + 
Sbjct: 88  RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKL----AAGSKTQT 142

Query: 150 VAQLPGF--PDNIKRSPRGGFWV 170
           V    G   PD +     G  +V
Sbjct: 143 VLPFTGLNDPDGVAVDNSGNVYV 165

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 15/122 (12%)

Query: 18  INSSTQGVVQYQIEGAIGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFART--- 73
           IN+ T+ V+   +     P+ +A    G   Y        I          +   +    
Sbjct: 143 INTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201

Query: 74  ------SPNRNHISVILSGDKTGRLMKYDPATKQV--TVLLGNLSFPNGVALSEDGNYIL 125
                 +P      V         +   D  T ++   + +G    P G+A++ DG  + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVY 259

Query: 126 LA 127
           +A
Sbjct: 260 VA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.81
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.68
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.66
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.65
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.64
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.59
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.45
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.42
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.37
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.35
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.35
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.32
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.24
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.22
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.14
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.14
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.13
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.08
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.07
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.07
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.07
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.06
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.0
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.99
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.97
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.96
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.9
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.86
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.8
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.79
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.73
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.7
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.68
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.64
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.6
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.59
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.57
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.55
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.55
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.53
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.51
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.5
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.48
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.47
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.47
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.47
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.44
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.44
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.43
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.41
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.4
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.4
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.37
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.37
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.36
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.35
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.35
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.35
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.35
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.35
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.34
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.33
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.33
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.32
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.3
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.3
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.26
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.24
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.24
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.24
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.23
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.23
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.21
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.21
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.21
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.21
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.2
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.2
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.18
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.18
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.18
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.17
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.16
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.13
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.09
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.09
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.07
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.07
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.07
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.06
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.04
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.03
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.02
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.02
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.01
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.99
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.99
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.98
3jro_A	753	Fusion protein of protein transport protein SEC13	97.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.98
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.94
2pm7_B	297	Protein transport protein SEC13, protein transport	97.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.85
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.85
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.82
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.82
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.77
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.77
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.74
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.72
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.67
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.61
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.61
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.59
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.59
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.58
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.57
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.48
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.47
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.44
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.43
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.42
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.38
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.38
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.31
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.31
3ott_A	758	Two-component system sensor histidine kinase; beta	97.28
2pm7_B	297	Protein transport protein SEC13, protein transport	97.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.27
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.27
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.26
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.26
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.22
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.2
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.19
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.18
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.11
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.11
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.1
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.05
3jro_A	753	Fusion protein of protein transport protein SEC13	97.04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.87
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.78
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.69
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.6
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.38
3ott_A	758	Two-component system sensor histidine kinase; beta	96.34
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.27
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.14
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.11
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.06
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.04
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.01
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.49
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.62
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.42
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	92.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.45
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	89.65
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	88.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	85.11
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	82.14

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.93  E-value=1.4e-23  Score=184.31  Aligned_cols=149  Identities=36%  Similarity=0.648  Sum_probs=123.9

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  168 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l  168 (268)
                      .++|+++|+++++++.+...+..||||+++|||++|||+++.+++|++|++++...+..+.+.++++ |+||++|++|+|
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            3678888888788877777889999999999999999999999999999998765666677767777 999999999999


Q ss_pred             EEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeC
Q 024436          169 WVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKD  248 (268)
Q Consensus       169 ~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~  248 (268)
                      ||+.+..+...       +          .           .... +.+.+++++|+++..+..++|..+..++.+...+
T Consensus       243 ~va~~~~~~~~-------~----------~-----------~~~~-~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~  293 (322)
T 2fp8_A          243 WVSSSEELDGN-------M----------H-----------GRVD-PKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHD  293 (322)
T ss_dssp             EEEEEEETTSS-------T----------T-----------SCEE-EEEEEECTTSCEEEEEECCTTTTTSCCCEEEEET
T ss_pred             EEEecCccccc-------c----------c-----------CCCc-cEEEEECCCCCEEEEEECCCCCccccceEEEEeC
Confidence            99998754210       0          0           0112 5689999999999999998876677788888889


Q ss_pred             CEEEEeeCCCCeEEEEeCC
Q 024436          249 GNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       249 g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ++|||++..+++|.+++++
T Consensus       294 g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          294 GLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TEEEEECSSCSEEEEEEC-
T ss_pred             CEEEEeecCCCceEEEecc
Confidence            9999999999999999875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.91  E-value=1e-22  Score=181.60  Aligned_cols=202  Identities=21%  Similarity=0.343  Sum_probs=144.7

Q ss_pred             CcceEEECC--CCC--EEEEEeCC--C--eEEEEeCCCCeEEEEEEcCCCC-------------C-eeEEE--ee-----
Q 024436           35 GPESLAFDA--LGE--GPYTGVSD--G--RIIKWHQDQRRWLHFARTSPNR-------------N-HISVI--LS-----   85 (268)
Q Consensus        35 ~P~gia~~~--dG~--~l~~~~~~--g--~I~~~~~~g~~~~~~~~~~~~~-------------~-~~~~~--~~-----   85 (268)
                      .|.||.+.+  +|+  ++++....  .  .|++++++++.........+.+             . |+...  ++     
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            799999976  464  55555442  2  4777888776433222211111             1 22211  11     


Q ss_pred             ------cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCceeEEEeCCCCCC
Q 024436           86 ------GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIVAQLPGFPD  158 (268)
Q Consensus        86 ------~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~~~~~~l~g~Pd  158 (268)
                            ..+.|+||++|++  +++.+.+++.+||||+|||||++|||+|+..++|++|+++. +.++..+.+ .+++.||
T Consensus       193 ~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PD  269 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVD  269 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEE
T ss_pred             cchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCc
Confidence                  2357899999994  67888899999999999999999999999999999999973 345555666 6678999


Q ss_pred             ceEEcC-CCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEEC----CCCCEEEEEEcC
Q 024436          159 NIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRIS----EQGNVLEILEEI  233 (268)
Q Consensus       159 gia~d~-dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~~~~~~~~~  233 (268)
                      |+++|+ +|++|+|+..+..+    |.++.+..      +             ++  ..+.++.    .++++.++|++ 
T Consensus       270 Gi~vD~e~G~lwva~~~~g~~----v~~~~P~~------~-------------~~--s~v~rI~~~~~~~~~v~~v~~d-  323 (355)
T 3sre_A          270 NISVDPVTGDLWVGCHPNGMR----IFFYDAEN------P-------------PG--SEVLRIQDILSEEPKVTVVYAE-  323 (355)
T ss_dssp             EEEECTTTCCEEEEEESCHHH----HHSCCTTS------C-------------CC--EEEEEEECTTSSSCEEEEEEEE-
T ss_pred             eEEEeCCCCcEEEEecCCceE----EEEECCCC------C-------------CC--CEEEEEEccCCCCcEEEEEEEc-
Confidence            999999 59999977544334    33444331      0             11  2455554    46889999998 


Q ss_pred             CCCceeceEEEEEeCCEEEEeeCCCCeEEEEeC
Q 024436          234 GRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       234 ~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      +|+.++.+|+++.++++||+|++.++ +..|++
T Consensus       324 dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          324 NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            89999999999999999999999998 667764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.81  E-value=8.6e-18  Score=145.75  Aligned_cols=172  Identities=17%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--------------CCCC-eeEEEee---
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--------------PNRN-HISVILS---   85 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--------------~~~~-~~~~~~~---   85 (268)
                      ....+..+.  .|.+++++++|+++++ . ++.|.++++++..+..+....              +++. |+.....   
T Consensus        46 ~~~~~~~~~--~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~  121 (297)
T 3g4e_A           46 QVQRVTMDA--PVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA  121 (297)
T ss_dssp             CEEEEECSS--CEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB
T ss_pred             cEEEEeCCC--ceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc
Confidence            344555553  7999999999995554 4 578999998755444443321              1112 3333211   


Q ss_pred             ----cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc--CCCCCceeEEEeC---CCC
Q 024436           86 ----GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSKAGTIEIVAQL---PGF  156 (268)
Q Consensus        86 ----~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~--~~~~g~~~~~~~l---~g~  156 (268)
                          ....+.||+++++ ++...+...+..||||+|+|||+.||++++..++|++|+++  ++.+...+.+.++   ++.
T Consensus       122 ~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~  200 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI  200 (297)
T ss_dssp             TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE
T ss_pred             cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC
Confidence                1345799999997 77777778888999999999999999999999999999985  3333344556554   367


Q ss_pred             CCceEEcCCCCEEEEEecCCCcceeeeEeeCcc-ceeeeeccccceeeee
Q 024436          157 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLPIDIVKIHS  205 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~-g~~l~~i~~~~~~~~~  205 (268)
                      |+||++|++|+||++.+.++.     |.++.+. |+++..++.|...+++
T Consensus       201 p~g~~~d~~G~lwva~~~~~~-----v~~~d~~tG~~~~~i~~p~~~~t~  245 (297)
T 3g4e_A          201 PDGMCIDAEGKLWVACYNGGR-----VIRLDPVTGKRLQTVKLPVDKTTS  245 (297)
T ss_dssp             EEEEEEBTTSCEEEEEETTTE-----EEEECTTTCCEEEEEECSSSBEEE
T ss_pred             CCeeEECCCCCEEEEEcCCCE-----EEEEcCCCceEEEEEECCCCCceE
Confidence            999999999999999998764     7777664 8888888877544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.77  E-value=7.6e-17  Score=140.19  Aligned_cols=146  Identities=15%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc--------------CCCCC-eeEEE--ee-
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--------------SPNRN-HISVI--LS-   85 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------------~~~~~-~~~~~--~~-   85 (268)
                      .++.+..+ ...|++++++++|+++++...+++|.+++++|+. ..+...              .+++. |+.+.  .. 
T Consensus        77 ~~~~~~~~-~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~  154 (305)
T 3dr2_A           77 TVDVLLDA-TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLR  154 (305)
T ss_dssp             CEEEEEES-CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGS
T ss_pred             CEEEEeCC-CCccceeeECCCCCEEEEECCCCEEEEECCCCCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcc
Confidence            34444444 3479999999999977777777899999998763 333211              01111 22110  00 


Q ss_pred             ----------cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC-----cEEEEEEccCCCCCceeEE
Q 024436           86 ----------GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS-----CRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        86 ----------~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~-----~~I~~~~~~~~~~g~~~~~  150 (268)
                                ....+.|+++|+++++++.+. .+..|||++|+|||+.||++++..     ++|++|+++++.+...+.+
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~  233 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF  233 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence                      012478999999878888777 888999999999999999999874     8999999975433344555


Q ss_pred             EeC-CCCCCceEEcCCCCEEEEE
Q 024436          151 AQL-PGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       151 ~~l-~g~Pdgia~d~dG~l~va~  172 (268)
                      .+. ++.|+||++|++|+||++.
T Consensus       234 ~~~~~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          234 ASVPDGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             ECCSSSCCCSEEECTTSCEEECC
T ss_pred             EECCCCCCCeEEECCCCCEEEec
Confidence            543 5789999999999999987

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.76  E-value=3.7e-16  Score=136.15  Aligned_cols=156  Identities=16%  Similarity=0.170  Sum_probs=111.6

Q ss_pred             CcceEEECCCCCEEEEEeCC--CeEEEEeC-CCCeEEEEEEcCCCC-Ce-e------EEEeecCCcceEEEEeCCCCeEE
Q 024436           35 GPESLAFDALGEGPYTGVSD--GRIIKWHQ-DQRRWLHFARTSPNR-NH-I------SVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~--g~I~~~~~-~g~~~~~~~~~~~~~-~~-~------~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      .|.+++++++|++|+++...  .+|+++++ +|+ +..++.....+ +. .      ..+..+...++||++|+++++.+
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            79999999999977777543  46999875 554 44444332111 00 0      12334456789999999865332


Q ss_pred             Ee-----------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          104 VL-----------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       104 ~~-----------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      ..           ...+..||||  +|||++|||+++.+++|++|++++ +.++..+.+.++ ..|+||++|++|++||+
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEE
Confidence            21           2456789999  899999999999999999999985 445556666665 47999999999999999


Q ss_pred             EecCCCcceeeeEeeCcccee--eeecccc
Q 024436          172 IHSRRKGISKLVLSFPWIGNV--LIKLPID  199 (268)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~g~~--l~~i~~~  199 (268)
                      ++.+++     |.++.+.|++  +..++.+
T Consensus       229 ~~~~~~-----V~~~~~~G~~~~~~~~~~~  253 (306)
T 2p4o_A          229 THIYNS-----VVRIAPDRSTTIIAQAEQG  253 (306)
T ss_dssp             CBTTCC-----EEEECTTCCEEEEECGGGT
T ss_pred             eCCCCe-----EEEECCCCCEEEEeecccc
Confidence            998875     7777777876  3345544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=7.3e-16  Score=132.78  Aligned_cols=143  Identities=15%  Similarity=0.207  Sum_probs=103.7

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc--------------CCCCC-eeEEE--e--
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART--------------SPNRN-HISVI--L--   84 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~--------------~~~~~-~~~~~--~--   84 (268)
                      ++.+..+ ...|.+++++++|+++++...+++|.++++ +|+ +..+...              .+++. |+.+.  .  
T Consensus        61 ~~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           61 LSPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             EEEEESS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred             eEEEECC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence            4555544 357999999999998777777799999998 565 3333211              11111 22211  0  


Q ss_pred             ---------ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-CCCC-CceeEEEe-
Q 024436           85 ---------SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKA-GTIEIVAQ-  152 (268)
Q Consensus        85 ---------~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-~~~~-g~~~~~~~-  152 (268)
                               .....+.|++++++ ++++.+...+..|||++++|||+.| ++++..++|++|+++ .+.+ +....+ . 
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~  215 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TV  215 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CC
T ss_pred             cccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eC
Confidence                     01134689999998 8888888889999999999999977 999999999999996 3333 334455 4 


Q ss_pred             CCCCCCceEEcCCCCEEEEE
Q 024436          153 LPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       153 l~g~Pdgia~d~dG~l~va~  172 (268)
                      ..+.|++|++|++|++|++.
T Consensus       216 ~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          216 EPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             SSSCCCSEEEBTTSCEEEEE
T ss_pred             CCCCCCeEEECCCCCEEEEc
Confidence            34689999999999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=2.8e-16  Score=138.08  Aligned_cols=221  Identities=12%  Similarity=0.225  Sum_probs=145.3

Q ss_pred             CCCcceEEECCCCCEEEEEeCC------------------------CeEEEEeCC-CCeEEEEEE----------cCCCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSD------------------------GRIIKWHQD-QRRWLHFAR----------TSPNR   77 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~------------------------g~I~~~~~~-g~~~~~~~~----------~~~~~   77 (268)
                      +..|.++|++++|++|+++..+                        ++|++++++ |+....+..          ..+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5689999999999988887766                        479999986 654322210          01111


Q ss_pred             CeeEEEeecCCcceEEEEeCCCC--eEEEe---------ecCCCCcceEEEcc-CCCEEEEEec-CCcEEEEEEccCCCC
Q 024436           78 NHISVILSGDKTGRLMKYDPATK--QVTVL---------LGNLSFPNGVALSE-DGNYILLAET-TSCRILRYWLKTSKA  144 (268)
Q Consensus        78 ~~~~~~~~~~~~g~v~~~d~~~~--~~~~~---------~~~~~~pnGia~sp-dg~~lyva~~-~~~~I~~~~~~~~~~  144 (268)
                      .   .++.+...++|+++|+++.  .+..+         ...+..|++|+++| +| .|||+++ .+++|++|+.++.. 
T Consensus       103 ~---l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g~~-  177 (329)
T 3fvz_A          103 N---YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSGKF-  177 (329)
T ss_dssp             C---EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTSCE-
T ss_pred             C---EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCCCE-
Confidence            1   2334556788999998744  23333         23466899999999 56 5999997 79999999977532 


Q ss_pred             CceeEEEeC-------C---CCCCceEEcCC-CCEEEEEecCCCcceeeeEeeCcc-ceeeeeccccce--eeeee-cc-
Q 024436          145 GTIEIVAQL-------P---GFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLPIDIV--KIHSS-LV-  208 (268)
Q Consensus       145 g~~~~~~~l-------~---g~Pdgia~d~d-G~l~va~~~~~~~~~~~v~~~~~~-g~~l~~i~~~~~--~~~~~-~~-  208 (268)
                        ...+...       +   ..|.+|++|++ |+|||++...++     |.++... |+++..+..+..  .+..+ +. 
T Consensus       178 --~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-----I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          178 --VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-----IQCFKTDTKEFVREIKHASFGRNVFAISYIP  250 (329)
T ss_dssp             --EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-----EEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred             --EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-----EEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence              2222210       1   24999999998 899999998874     7777765 888887743310  11100 00 


Q ss_pred             ------------ccCCCcEEEEEEC-CCCCEEEEEEcCCCCceeceEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          209 ------------KLSGNGGMAMRIS-EQGNVLEILEEIGRKMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       209 ------------~~~~~~~~~~~~~-~~G~~~~~~~~~~g~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                                  ..... ..+..++ .+|+++..+.... ..+..+..++. .+|+||+++..+++|.+++++
T Consensus       251 g~~~~~~g~~~v~~~~~-~~v~~~~~~~g~~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          251 GFLFAVNGKPYFGDQEP-VQGFVMNFSSGEIIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             TEEEEEECCCCTTCSCC-CCEEEEETTTCCEEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CEEEEeCCCEEeccCCC-cEEEEEEcCCCeEEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                        00011 2355565 4588888775322 23455666655 568999999999999999753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.71  E-value=2.5e-15  Score=133.85  Aligned_cols=191  Identities=15%  Similarity=0.092  Sum_probs=127.3

Q ss_pred             cCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CCCC-----eeEEEeecCCcceEEEEeCCCC
Q 024436           30 IEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS---PNRN-----HISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        30 ~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~~~-----~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      +..+..|.++++++ ++.+|+++...++|+|++++|.....+...+   +.+-     -...++.+...++|+++++++.
T Consensus        69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            34467899999996 5777778888999999999886433332211   1110     0112344556678999998844


Q ss_pred             eEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC-CCCEEEEEecCC
Q 024436          101 QVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~-dG~l~va~~~~~  176 (268)
                      ..+.+. ..+..|+||+++|+++.||++|+.. ++|++++++|..   ...+.. --..|+||++|+ +++||+++...+
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            344443 5788999999999888999999998 999999998732   333322 123699999996 567999998765


Q ss_pred             CcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeC
Q 024436          177 KGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV  256 (268)
Q Consensus       177 ~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~  256 (268)
                      .     |.++                                  +.+|.....+-...   +..+.+++..+++||++++
T Consensus       226 ~-----I~~~----------------------------------~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~  263 (349)
T 3v64_C          226 V-----IERA----------------------------------NLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDW  263 (349)
T ss_dssp             E-----EEEE----------------------------------ETTSCSCEEEECSS---CSSEEEEEEETTEEEEEET
T ss_pred             E-----EEEE----------------------------------eCCCCceEEEEeCC---CCCceEEEEECCEEEEecC
Confidence            2     3333                                  23332222221111   3445565557788888888


Q ss_pred             CCCeEEEEe
Q 024436          257 NMPYAGLYN  265 (268)
Q Consensus       257 ~~~~v~~~~  265 (268)
                      .+++|.+++
T Consensus       264 ~~~~V~~~~  272 (349)
T 3v64_C          264 HTKSINSAN  272 (349)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            888888886

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=8e-15  Score=125.34  Aligned_cols=223  Identities=16%  Similarity=0.204  Sum_probs=142.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC--C---CCee--------EEEeecC-CcceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--N---RNHI--------SVILSGD-KTGRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~--~---~~~~--------~~~~~~~-~~g~v~~~d~~   98 (268)
                      +..|.+++++++|++++++..+++|.+++++++....+...+.  .   .+..        ..++... ..+.|+++|++
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~  108 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  108 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence            5689999999999988888889999999998875444422110  0   0000        1122222 25788888876


Q ss_pred             CCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecC
Q 024436           99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus        99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      +..+..+. .....|++|+++|+|+ |||++..+++|++|+.++..   ...+...  ...|.+|++|++|++|++....
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE---EEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence            33333332 3456899999999996 99999999999999976521   2233211  1369999999999999999876


Q ss_pred             CCcceeeeEeeCccceeeeecccc--ceeeee-ecc-------ccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEE-
Q 024436          176 RKGISKLVLSFPWIGNVLIKLPID--IVKIHS-SLV-------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEV-  244 (268)
Q Consensus       176 ~~~~~~~v~~~~~~g~~l~~i~~~--~~~~~~-~~~-------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~-  244 (268)
                      +.     |.++...++.+..+...  ...+.. ++.       ........+.+++++|+.+..+.....  ...+..+ 
T Consensus       185 ~~-----i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~  257 (286)
T 1q7f_A          185 HC-----VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK--HAQCFDVA  257 (286)
T ss_dssp             TE-----EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC--CSCEEEEE
T ss_pred             CE-----EEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC--CCcceeEE
Confidence            54     66777777776665432  111111 111       011110156677777777776654321  1223344 


Q ss_pred             EEeCCEEEEeeCCCCeEEEEeCC
Q 024436          245 EEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       245 ~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ...+|+||+++. +++|.++++.
T Consensus       258 ~~~~g~l~vs~~-~~~v~v~~~~  279 (286)
T 1q7f_A          258 LMDDGSVVLASK-DYRLYIYRYV  279 (286)
T ss_dssp             EETTTEEEEEET-TTEEEEEECS
T ss_pred             ECCCCcEEEECC-CCeEEEEEcc
Confidence            345789999975 7899988764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.70  E-value=3.9e-15  Score=134.33  Aligned_cols=189  Identities=14%  Similarity=0.065  Sum_probs=127.7

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CCCC-----eeEEEeecCCcceEEEEeCCCCeE
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS---PNRN-----HISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~~~-----~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .+..|.++++++ ++.+|+++...++|++++++|.....+...+   |.+-     -...++.+...++|+++++++...
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            467899999996 5777778888999999999987544443221   1110     011234455667899988874443


Q ss_pred             EEe-ecCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC-CCCEEEEEecCCCc
Q 024436          103 TVL-LGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRRKG  178 (268)
Q Consensus       103 ~~~-~~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~-dG~l~va~~~~~~~  178 (268)
                      +.+ ..++..|+||+++|+++.||+++... ++|++++++|..   ...+.. .-..|.||++|+ +++||+++...+. 
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-  269 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-  269 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-
Confidence            443 45778999999999888999999988 999999998742   333332 123699999996 5679999976652 


Q ss_pred             ceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCC
Q 024436          179 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNM  258 (268)
Q Consensus       179 ~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~  258 (268)
                          |.++                                  +.+|.....+... +  +..+.+++..+++||++++.+
T Consensus       270 ----I~~~----------------------------------d~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~  308 (386)
T 3v65_B          270 ----IERA----------------------------------NLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHT  308 (386)
T ss_dssp             ----EEEE----------------------------------CTTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTT
T ss_pred             ----EEEE----------------------------------eCCCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCC
Confidence                3333                                  3333222222211 1  344556655778888888888


Q ss_pred             CeEEEEe
Q 024436          259 PYAGLYN  265 (268)
Q Consensus       259 ~~v~~~~  265 (268)
                      ++|.+++
T Consensus       309 ~~V~~~~  315 (386)
T 3v65_B          309 KSINSAN  315 (386)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            8888886

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.70  E-value=5e-15  Score=126.09  Aligned_cols=188  Identities=13%  Similarity=0.048  Sum_probs=122.5

Q ss_pred             CCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCe--------eEEEeecCCcceEEEEeCCCCeEEE
Q 024436           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNH--------ISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ..|++++++++ +.+|+++..+++|.+++++|.....+....-..+.        -..++.+...++|++++.++...+.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            36899999995 56666777789999999988643333211101110        0122344556788888887433333


Q ss_pred             ee-cCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC-CEEEEEecCCCcc
Q 024436          105 LL-GNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG-GFWVGIHSRRKGI  179 (268)
Q Consensus       105 ~~-~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG-~l~va~~~~~~~~  179 (268)
                      +. .++..|+||+++|+++.||+++..  +++|+++++++..   .+.+... ...|.||++|+++ +||+++...+.  
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~--  190 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR--  190 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTTTE--
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE--
Confidence            33 456889999999987799999987  6899999998632   3334322 2479999999975 69999987753  


Q ss_pred             eeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCC
Q 024436          180 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMP  259 (268)
Q Consensus       180 ~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~  259 (268)
                         |.++...+                                  .....+...    ...+..++..+++||+++..++
T Consensus       191 ---I~~~~~~g----------------------------------~~~~~~~~~----~~~P~gi~~d~~~lyva~~~~~  229 (267)
T 1npe_A          191 ---AECLNPAQ----------------------------------PGRRKVLEG----LQYPFAVTSYGKNLYYTDWKTN  229 (267)
T ss_dssp             ---EEEEETTE----------------------------------EEEEEEEEC----CCSEEEEEEETTEEEEEETTTT
T ss_pred             ---EEEEecCC----------------------------------CceEEEecC----CCCceEEEEeCCEEEEEECCCC
Confidence               44433222                                  111111111    1223455556888999999999


Q ss_pred             eEEEEeCC
Q 024436          260 YAGLYNYS  267 (268)
Q Consensus       260 ~v~~~~~~  267 (268)
                      +|.+++.+
T Consensus       230 ~v~~~d~~  237 (267)
T 1npe_A          230 SVIAMDLA  237 (267)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEeCC
Confidence            99988875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.69  E-value=1e-14  Score=128.02  Aligned_cols=193  Identities=11%  Similarity=0.044  Sum_probs=124.5

Q ss_pred             CCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCC----CeEEEEEEcCCCCCe--------eEEEeecCCcceEEEEeC
Q 024436           31 EGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQ----RRWLHFARTSPNRNH--------ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        31 ~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g----~~~~~~~~~~~~~~~--------~~~~~~~~~~g~v~~~d~   97 (268)
                      +.+..|++++++++ +.+|+++..+++|++++++|    .....+....-..+.        -..++.+...++|.++++
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence            34668999999985 56777788889999999887    221222111101110        012334456788999998


Q ss_pred             CCCeEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCC-CCEEEEEe
Q 024436           98 ATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-GGFWVGIH  173 (268)
Q Consensus        98 ~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d-G~l~va~~  173 (268)
                      ++...+.+. ..+..|+||+++|+++.||+++... ++|++++++|..   .+.+.. --..|.||++|++ ++||+++.
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            854455444 4678999999999888999999876 899999998732   344432 1247999999975 57999997


Q ss_pred             cCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      ..+.     |.++                                  +.+|....++.... ..+..+.+++..+++||+
T Consensus       184 ~~~~-----I~~~----------------------------------d~dg~~~~~~~~~~-~~~~~P~giav~~~~ly~  223 (316)
T 1ijq_A          184 KLHS-----ISSI----------------------------------DVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFW  223 (316)
T ss_dssp             TTTE-----EEEE----------------------------------ETTSCSCEEEEECT-TTTSSEEEEEEETTEEEE
T ss_pred             CCCe-----EEEE----------------------------------ecCCCceEEEeecC-CccCCcEEEEEECCEEEE
Confidence            6652     3333                                  33332222222111 123445566666788888


Q ss_pred             eeCCCCeEEEEeC
Q 024436          254 GSVNMPYAGLYNY  266 (268)
Q Consensus       254 ~s~~~~~v~~~~~  266 (268)
                      +++.+++|.+++.
T Consensus       224 ~d~~~~~V~~~~~  236 (316)
T 1ijq_A          224 TDIINEAIFSANR  236 (316)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EECCCCeEEEEeC
Confidence            8888888888875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.68  E-value=1.1e-14  Score=133.30  Aligned_cols=210  Identities=12%  Similarity=0.059  Sum_probs=131.6

Q ss_pred             CCCCcceEEECCCCCEEEEEeCC----CeEEEEeCCCCeE--EEEEEc-CCCC----C-eeEEEeecCCcceEEEEeCCC
Q 024436           32 GAIGPESLAFDALGEGPYTGVSD----GRIIKWHQDQRRW--LHFART-SPNR----N-HISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~----g~I~~~~~~g~~~--~~~~~~-~~~~----~-~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      .+..|.+++++++|++|+++...    ..++.+.+++...  ...+.. .|..    + -...++.+..+++|+++|+++
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~  259 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT  259 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence            46789999999999966666532    3466666554321  122211 1111    0 011233556778999999987


Q ss_pred             CeE-EEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC--CCCCceeEEEeC---C------------CCCCc
Q 024436          100 KQV-TVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIVAQL---P------------GFPDN  159 (268)
Q Consensus       100 ~~~-~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~--~~~g~~~~~~~l---~------------g~Pdg  159 (268)
                      +++ +.+.  .....+++|+++|||++|||+++.+++|+++++++  +.+.....++..   .            ..|.|
T Consensus       260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~g  339 (433)
T 4hw6_A          260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQ  339 (433)
T ss_dssp             CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEE
T ss_pred             CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCcc
Confidence            776 4333  23355678999999999999999999999999873  223323333321   1            24888


Q ss_pred             eEE---------cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436          160 IKR---------SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  230 (268)
Q Consensus       160 ia~---------d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  230 (268)
                      |++         |++|+|||+++.+++     |.++.++|++....-.+..    +     .. +.     .+|.     
T Consensus       340 iav~~n~~y~~dd~~g~lyvaD~~n~~-----I~~~~~~G~v~t~~G~g~~----~-----~~-G~-----~dG~-----  394 (433)
T 4hw6_A          340 GIFVKNEAYAGEEDEYDFYFCDRDSHT-----VRVLTPEGRVTTYAGRGNS----R-----EW-GY-----VDGE-----  394 (433)
T ss_dssp             EEEEECGGGTTSSCCEEEEEEETTTTE-----EEEECTTSEEEEEECCCTT----C-----SS-CC-----BCEE-----
T ss_pred             EEEEccccccccCCCCcEEEEECCCCE-----EEEECCCCCEEEEEeCCCC----C-----cc-cc-----CCCc-----
Confidence            999         999999999999875     6666666644321111100    0     00 00     0010     


Q ss_pred             EcCCCCceeceEEEEEe--CCEEEEeeCCCCeEEEEeCC
Q 024436          231 EEIGRKMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       231 ~~~~g~~~~~~s~~~~~--~g~Lyv~s~~~~~v~~~~~~  267 (268)
                       .+.-..+..+.+++..  +|.|||++..+++|.+|+++
T Consensus       395 -~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          395 -LRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             -TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -cccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence             0001235667777665  79999999999999999875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.5e-14  Score=132.44  Aligned_cols=215  Identities=14%  Similarity=0.127  Sum_probs=132.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCC-EEEEEeCCC----eEEEEeCCCCeE--EEEEEc--------CCCCCeeEEEeecCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGE-GPYTGVSDG----RIIKWHQDQRRW--LHFART--------SPNRNHISVILSGDK   88 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~-~l~~~~~~g----~I~~~~~~g~~~--~~~~~~--------~~~~~~~~~~~~~~~   88 (268)
                      .+..+.. .+..|.+|+++++|+ +|+++..++    .++.++++|...  ..+...        .+...+  .++.+..
T Consensus       170 ~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~--lyv~d~~  246 (430)
T 3tc9_A          170 YVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE--LYFNSWN  246 (430)
T ss_dssp             EEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC--EEEEETT
T ss_pred             EEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE--EEEEECC
Confidence            3444433 456899999999999 555554332    566777776532  222211        111111  2334557


Q ss_pred             cceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC--CCCceeEEEeCC----------
Q 024436           89 TGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLP----------  154 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~--~~g~~~~~~~l~----------  154 (268)
                      .++|++++++++....+.  .....|+||+++|+|++|||++..+++|++|+.++.  .+.....+...+          
T Consensus       247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~  326 (430)
T 3tc9_A          247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVG  326 (430)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEG
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCC
Confidence            789999999877653332  334679999999999999999999999999998852  222223332210          


Q ss_pred             -----CCCC-ceEE--------cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEE
Q 024436          155 -----GFPD-NIKR--------SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI  220 (268)
Q Consensus       155 -----g~Pd-gia~--------d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  220 (268)
                           ..|. |+++        |++|+||++++.+++     |.++.++|++....-.+.          ....+.    
T Consensus       327 ~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-----I~~i~~~G~v~~~~g~g~----------~~~~G~----  387 (430)
T 3tc9_A          327 KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-----IRILTPQGRVTTFAGRGS----------NGTSGY----  387 (430)
T ss_dssp             GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-----EEEECTTSEEEEEEECCT----------TSSSSC----
T ss_pred             cceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-----EEEECCCCcEEEEEeCCC----------CCCCcc----
Confidence                 2477 8888        567999999998774     555555554322111100          000000    


Q ss_pred             CCCCCEEEEEEcCCCCceeceEEEEEe--CCEEEEeeCCCCeEEEEeCC
Q 024436          221 SEQGNVLEILEEIGRKMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       221 ~~~G~~~~~~~~~~g~~~~~~s~~~~~--~g~Lyv~s~~~~~v~~~~~~  267 (268)
                       .+|.      ...-..+..+..++..  ++.|||++..+++|-+++.+
T Consensus       388 -~dG~------~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          388 -NDGD------LRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -BCEE------TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -cCCC------chhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             0000      0000125567777664  68999999999999999865

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=4.9e-14  Score=128.07  Aligned_cols=223  Identities=13%  Similarity=0.064  Sum_probs=138.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC--------CCCeeEEEeecC-CcceEEEEeCCCCeE-
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--------NRNHISVILSGD-KTGRLMKYDPATKQV-  102 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~-~~g~v~~~d~~~~~~-  102 (268)
                      +..|.+++++++|++|+++..+++|.++++++..+..+.....        .+.++  +..+. ..++|++++++++.. 
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l--~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRV--YSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEE--EEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcE--EEEecCCCceEEEEEcCCCcee
Confidence            6789999999999988888888999999998765555443321        11212  22222 223899999875443 


Q ss_pred             EEe----ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----C--CCCC-ceEEcC-CCCEEE
Q 024436          103 TVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL----P--GFPD-NIKRSP-RGGFWV  170 (268)
Q Consensus       103 ~~~----~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----~--g~Pd-gia~d~-dG~l~v  170 (268)
                      ..+    ......|++++++|++..||+++. +++|++|+.+++.   ...+...    .  ..|. +|++|+ +|+||+
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            233    226678999999996558999875 7899999997532   3344221    1  1256 999999 578999


Q ss_pred             EEecCCCcceeeeEeeCccceeeeecccc--------------ceeeee-ecc-------ccC-CCcEEEEEEC-CCCCE
Q 024436          171 GIHSRRKGISKLVLSFPWIGNVLIKLPID--------------IVKIHS-SLV-------KLS-GNGGMAMRIS-EQGNV  226 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~g~~l~~i~~~--------------~~~~~~-~~~-------~~~-~~~~~~~~~~-~~G~~  226 (268)
                      ++...+.     |.++..+++.......+              ...+.. ++.       ... .. ..+.+++ ++|++
T Consensus       284 ~d~~~~~-----I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~-~~I~~~~~~~G~v  357 (409)
T 3hrp_A          284 SDQNLSS-----VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG-YCLRKLDILDGYV  357 (409)
T ss_dssp             EETTTTE-----EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT-CEEEEEETTTTEE
T ss_pred             EeCCCCE-----EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC-CEEEEEECCCCEE
Confidence            9988774     66777666532211110              000110 110       011 11 3455555 45554


Q ss_pred             EEEEEcC------CC----CceeceEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          227 LEILEEI------GR----KMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       227 ~~~~~~~------~g----~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ......+      +|    ..+..+..++. .+|+|||++..+++|.+++++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            4333321      11    11455777765 459999999999999999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.66  E-value=2.3e-14  Score=137.04  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=133.0

Q ss_pred             EEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CCCC---e--eEEEeecCCcceEEEEe
Q 024436           26 VQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTS---PNRN---H--ISVILSGDKTGRLMKYD   96 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~~~---~--~~~~~~~~~~g~v~~~d   96 (268)
                      ..++++++..|.+|+++++ +.+|+++..+++|.|++++|.....+...+   |.+-   +  -..+..+...++|.+++
T Consensus        29 ~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~  108 (628)
T 4a0p_A           29 VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK  108 (628)
T ss_dssp             EECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence            3445556678999999985 666677888999999999886444433221   1110   0  11234556778999999


Q ss_pred             CCCCeEEEee-cCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC-CCEEEEEe
Q 024436           97 PATKQVTVLL-GNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR-GGFWVGIH  173 (268)
Q Consensus        97 ~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d-G~l~va~~  173 (268)
                      +++...+.+. ..+..|++|+++|.+..||++|.. .++|++++++|..   ...+.+--..|.||++|++ ++||+++.
T Consensus       109 ~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~P~GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          109 LDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLVPNVGRANGLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             TTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEECCCCCcceEEEccccCEEEEEEC
Confidence            8854444554 788999999999976789999976 6899999999743   3444432247999999996 57999997


Q ss_pred             cCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      ..+.     |.                                  +++.+|.-.+++.+.    ++.+.+++..+++||+
T Consensus       186 ~~~~-----I~----------------------------------~~d~dG~~~~v~~~~----l~~P~glav~~~~ly~  222 (628)
T 4a0p_A          186 DTNL-----IE----------------------------------SSNMLGLNREVIADD----LPHPFGLTQYQDYIYW  222 (628)
T ss_dssp             TTTE-----EE----------------------------------EEETTSCSCEEEEEC----CSCEEEEEEETTEEEE
T ss_pred             CCCE-----EE----------------------------------EEcCCCCceEEeecc----CCCceEEEEECCEEEE
Confidence            6652     32                                  223333222233221    3445566667788999


Q ss_pred             eeCCCCeEEEEeCC
Q 024436          254 GSVNMPYAGLYNYS  267 (268)
Q Consensus       254 ~s~~~~~v~~~~~~  267 (268)
                      +++.+++|.+++..
T Consensus       223 tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          223 TDWSRRSIERANKT  236 (628)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             ecCCCCEEEEEECC
Confidence            99988998888753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.65  E-value=1.6e-14  Score=122.92  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=110.9

Q ss_pred             CCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecC--CcceEEEEeCC
Q 024436           32 GAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGD--KTGRLMKYDPA   98 (268)
Q Consensus        32 ~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~--~~g~v~~~d~~   98 (268)
                      ++..|++++++++ +.+|+++...++|.+++.+|+....+....          +...+++  +.+.  ..++|++++++
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~ly--v~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY--WTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE--EEECCSSSCEEEEEETT
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEE--EEECCCCCcEEEEEecC
Confidence            4568999999996 566666777899999999876433322111          1112222  2222  25789999887


Q ss_pred             CCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436           99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus        99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      +...+.+. ..+..|+||++++++++||++++..++|+++++++.   ....+......|+||++| +++||++++.+++
T Consensus       155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecCCCCceEEEEe-CCEEEEEECCCCe
Confidence            43334443 567889999999998899999999999999999852   233333333579999998 6899999998874


Q ss_pred             cceeeeEeeCc-cceeeeecccc
Q 024436          178 GISKLVLSFPW-IGNVLIKLPID  199 (268)
Q Consensus       178 ~~~~~v~~~~~-~g~~l~~i~~~  199 (268)
                           |.++.. +|+.+..++.+
T Consensus       231 -----v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          231 -----VIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             -----EEEEETTTTEEEEEECCS
T ss_pred             -----EEEEeCCCCCceEEEccc
Confidence                 666654 58888888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.65  E-value=3.2e-14  Score=128.95  Aligned_cols=193  Identities=11%  Similarity=0.049  Sum_probs=124.5

Q ss_pred             CCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCe----EEEEEEcCCCCCe--------eEEEeecCCcceEEEEeC
Q 024436           31 EGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRR----WLHFARTSPNRNH--------ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        31 ~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~----~~~~~~~~~~~~~--------~~~~~~~~~~g~v~~~d~   97 (268)
                      +.+..|.++++++ ++.+|+++...++|++++++|..    ...+.......+.        -..++.+...++|.++++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            3467899999998 56777788889999999988721    1222111111110        112345566788999998


Q ss_pred             CCCeEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCC-CCEEEEEe
Q 024436           98 ATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-GGFWVGIH  173 (268)
Q Consensus        98 ~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d-G~l~va~~  173 (268)
                      ++...+.+. ..+..|+||+++|.++.||++|... ++|++++++|..   ...+.. .-..|.||++|++ ++||+++.
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            855444444 5788899999999878999999764 899999998742   333332 1147999999964 57999987


Q ss_pred             cCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      ..+.     |.+                                  ++.+|....++.... ..+..+.+++..+++||+
T Consensus       266 ~~~~-----I~~----------------------------------~d~dG~~~~~~~~~~-~~l~~P~gl~v~~~~lyw  305 (400)
T 3p5b_L          266 KLHS-----ISS----------------------------------IDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFW  305 (400)
T ss_dssp             TTTE-----EEE----------------------------------EETTSCCCEEEEECS-STTSSEEEEEEETTEEEE
T ss_pred             CCCE-----EEE----------------------------------EeCCCCccEEEEeCC-CCCCCCEEEEEeCCEEEE
Confidence            6652     333                                  333333222222211 124455666667788888


Q ss_pred             eeCCCCeEEEEeC
Q 024436          254 GSVNMPYAGLYNY  266 (268)
Q Consensus       254 ~s~~~~~v~~~~~  266 (268)
                      +++.+++|.+++.
T Consensus       306 td~~~~~V~~~~~  318 (400)
T 3p5b_L          306 TDIINEAIFSANR  318 (400)
T ss_dssp             EESSSCSEEEEES
T ss_pred             ecCCCCeEEEEEc
Confidence            8888888888763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.64  E-value=2.2e-14  Score=126.18  Aligned_cols=189  Identities=12%  Similarity=0.040  Sum_probs=123.2

Q ss_pred             CCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeE--EEEEE--cCCCCC-----eeEEEeecCCcceEEEEeCCCCeE
Q 024436           33 AIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRW--LHFAR--TSPNRN-----HISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        33 ~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~--~~~~~--~~~~~~-----~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      +..|.++++++ ++.+|+++...++|.|++++|...  .....  ..+.+-     -...++.+...++|.++++++...
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence            34588899998 577888888899999999887521  11111  111110     011234555678999999884444


Q ss_pred             EEee-cCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC-CCCEEEEEecCCCc
Q 024436          103 TVLL-GNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRRKG  178 (268)
Q Consensus       103 ~~~~-~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~-dG~l~va~~~~~~~  178 (268)
                      +.+. ..+..|+||+++|+++.||+++.. .++|++++++|..   ...+.. --..|.||++|+ +++||+++...+. 
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-  189 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-  189 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECCCCE-
Confidence            4444 778899999999987799999975 6899999998732   333332 113699999998 5679999977652 


Q ss_pred             ceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCC
Q 024436          179 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNM  258 (268)
Q Consensus       179 ~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~  258 (268)
                          |.++.                                  .+|....++...   .+..+.+++..+++||++.+.+
T Consensus       190 ----I~~~d----------------------------------~dG~~~~~~~~~---~~~~P~glav~~~~lywtd~~~  228 (318)
T 3sov_A          190 ----IHKSN----------------------------------LDGTNRQAVVKG---SLPHPFALTLFEDILYWTDWST  228 (318)
T ss_dssp             ----EEEEE----------------------------------TTSCSCEEEECS---CCSCEEEEEEETTEEEEEETTT
T ss_pred             ----EEEEc----------------------------------CCCCceEEEecC---CCCCceEEEEeCCEEEEEecCC
Confidence                33333                                  232222222211   1334455555677788888888


Q ss_pred             CeEEEEeC
Q 024436          259 PYAGLYNY  266 (268)
Q Consensus       259 ~~v~~~~~  266 (268)
                      ++|.+++.
T Consensus       229 ~~V~~~~~  236 (318)
T 3sov_A          229 HSILACNK  236 (318)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEEC
Confidence            88877765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.64  E-value=2.7e-14  Score=126.32  Aligned_cols=155  Identities=13%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             CCCCcceEEECCCCCEEEEEeC-----CCeEEEEeCC-CCeEEEEEEcC---CCCCe----------eEEEeecC---Cc
Q 024436           32 GAIGPESLAFDALGEGPYTGVS-----DGRIIKWHQD-QRRWLHFARTS---PNRNH----------ISVILSGD---KT   89 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~-----~g~I~~~~~~-g~~~~~~~~~~---~~~~~----------~~~~~~~~---~~   89 (268)
                      .+..|.+++++++|++|+++..     .++|++++++ |+....+....   ....+          ...++++.   ..
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            3578999999999998888765     6899999986 44333332110   00000          01223433   56


Q ss_pred             ceEEEEeCCCCeEEEeecC------------------------------CCCcceEEEccCCCEEEEEecCCcEEEEEEc
Q 024436           90 GRLMKYDPATKQVTVLLGN------------------------------LSFPNGVALSEDGNYILLAETTSCRILRYWL  139 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~------------------------------~~~pnGia~spdg~~lyva~~~~~~I~~~~~  139 (268)
                      +.|+++|+++++......+                              ...||||+++|||++||++++..++|++++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            7899999887766554322                              0247999999999999999999999999986


Q ss_pred             c---CCCCCce------eEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc-ccee
Q 024436          140 K---TSKAGTI------EIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNV  192 (268)
Q Consensus       140 ~---~~~~g~~------~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~-~g~~  192 (268)
                      +   .+.++..      ..... .+.|+||++|++|++|++++..+.     |.++.+ +|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~-----V~~~d~~~G~~  281 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSA-----IGVITSADRAY  281 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTE-----EEEEETTTTEE
T ss_pred             HHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCe-----EEEEECCCCCE
Confidence            4   1121111      11222 247999999999999999998764     666665 6654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=9.8e-14  Score=120.97  Aligned_cols=170  Identities=19%  Similarity=0.232  Sum_probs=112.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEE-c-----------CCCCC-eeEEEe--
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSD----GRIIKWHQDQRRWLHFAR-T-----------SPNRN-HISVIL--   84 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~----g~I~~~~~~g~~~~~~~~-~-----------~~~~~-~~~~~~--   84 (268)
                      .+..+.......|.+++++++|+++++...+    +.|+++++++.....+.. .           .+++. |+....  
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence            3343332323579999999999987777666    799999987654332211 1           11111 221110  


Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC--CCCCc--eeEEEeCC--CCCC
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGT--IEIVAQLP--GFPD  158 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~--~~~g~--~~~~~~l~--g~Pd  158 (268)
                      .....+.|+++|+++++.+.+......|++++++|||+.||++++..++|++|+++.  .....  ...+...+  ..|+
T Consensus       157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~  236 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD  236 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred             ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCC
Confidence            001257899999987777777666778999999999999999998889999999852  21111  11222333  3799


Q ss_pred             ceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccc
Q 024436          159 NIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  198 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~  198 (268)
                      ++++|++|++|++....+.     |.++.+.++.+..+..
T Consensus       237 ~i~~d~~G~l~v~~~~~~~-----v~~~d~~g~~~~~~~~  271 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGR-----VLVFNKRGYPIGQILI  271 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTE-----EEEECTTSCEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCE-----EEEECCCCCEEEEEEc
Confidence            9999999999999987653     5556556666555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=7.4e-14  Score=117.87  Aligned_cols=225  Identities=15%  Similarity=0.195  Sum_probs=131.7

Q ss_pred             ecCCCC---CcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEEcCCCCCe-------eEEEeecCCcceEEEEeC
Q 024436           29 QIEGAI---GPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRNH-------ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        29 ~~~~~~---~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~g~v~~~d~   97 (268)
                      +..++.   .|++++++++|++|+ ++..+++|.++++++.....+.......+.       ...++... .++|+++|+
T Consensus        16 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           16 PFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             CCCSCSSCCCEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred             ccccccccCCccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence            334455   999999999999776 546789999998876432221111000000       01122323 678999999


Q ss_pred             CCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEEEecC
Q 024436           98 ATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus        98 ~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      +++...... .++..|++|+++++|+ |||++...++|++|+.....   ....... ...|.+|++|++|++|++....
T Consensus        95 ~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B           95 GSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             TCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS---CEECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             CCceEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce---eEeeccccCCCceeEEEeCCCCEEEEECCC
Confidence            865554433 4557899999999996 99999988999999643211   1111111 1369999999999999999876


Q ss_pred             CCcceeeeEeeCccceeeeeccc-cceeeeee-ccc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE
Q 024436          176 RKGISKLVLSFPWIGNVLIKLPI-DIVKIHSS-LVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE  246 (268)
Q Consensus       176 ~~~~~~~v~~~~~~g~~l~~i~~-~~~~~~~~-~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~  246 (268)
                      +.     |.++...+........ ....+..+ +.+       .... +.+.+++++++....... .+  +..+..+..
T Consensus       171 ~~-----i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~-~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~  241 (270)
T 1rwi_B          171 NR-----VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT-NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAV  241 (270)
T ss_dssp             TE-----EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT-SCEEEECTTCSCCEECCC-CS--CSCEEEEEE
T ss_pred             CE-----EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC-CcEEEEcCCCCcceeecc-CC--CCCceeEEE
Confidence            53     6666655543322211 11111111 110       0001 224445554433222211 11  234556655


Q ss_pred             -eCCEEEEeeCCCCeEEEEeCC
Q 024436          247 -KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       247 -~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                       .+|+||+++..+++|.++++.
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCCEEEEECCCCEEEEEcCC
Confidence             468899999999999999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.62  E-value=8.7e-14  Score=135.96  Aligned_cols=192  Identities=11%  Similarity=0.074  Sum_probs=127.2

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCe----EEEEEEc---CCCC---Ce--eEEEeecCCcceEEEEeCC
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRR----WLHFART---SPNR---NH--ISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~----~~~~~~~---~~~~---~~--~~~~~~~~~~g~v~~~d~~   98 (268)
                      .+..|.+|++++ ++.+|+++...++|++++.+|..    ...+...   .|.+   .+  -..++.+...++|++++++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            467899999998 56777788888999999988731    1122111   1111   00  1234456677899999998


Q ss_pred             CCeEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC-CCCEEEEEec
Q 024436           99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~-dG~l~va~~~  174 (268)
                      +...+.+. ..+..|+||+++|.+++||++|+.. ++|++++++|..   +.++.. .-..|.||++|+ +|+||+++..
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            55555554 5788899999999877999999876 899999998732   344433 124799999995 5689999876


Q ss_pred             CCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEe
Q 024436          175 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIG  254 (268)
Q Consensus       175 ~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~  254 (268)
                      .+.     |                                  .+++.+|....++.... ..++.+.+++..+++||++
T Consensus       579 ~~~-----I----------------------------------~~~d~dG~~~~~v~~~~-~~l~~P~glav~~~~lYwt  618 (791)
T 3m0c_C          579 LHS-----I----------------------------------SSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWT  618 (791)
T ss_dssp             TTE-----E----------------------------------EEEETTSCSCEEEEECT-TTTSSEEEEEEETTEEEEE
T ss_pred             CCc-----E----------------------------------EEEecCCCceEEEecCC-CccCCCCEEEEeCCEEEEE
Confidence            542     3                                  33333333333222211 2245566666678888998


Q ss_pred             eCCCCeEEEEeC
Q 024436          255 SVNMPYAGLYNY  266 (268)
Q Consensus       255 s~~~~~v~~~~~  266 (268)
                      ++..++|.+++.
T Consensus       619 D~~~~~I~~~dk  630 (791)
T 3m0c_C          619 DIINEAIFSANR  630 (791)
T ss_dssp             ETTTTEEEEEET
T ss_pred             ECCCCEEEEEeC
Confidence            888888888864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.62  E-value=1.7e-14  Score=126.98  Aligned_cols=159  Identities=14%  Similarity=0.098  Sum_probs=111.8

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCC--------eeEEEeecC-CcceEEEEeCCCCe
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRN--------HISVILSGD-KTGRLMKYDPATKQ  101 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~-~~g~v~~~d~~~~~  101 (268)
                      ++..|+|+|+++ +|++|+++...++|.+++++|.....+....-..+        -...+.++. ..++|+++++++..
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  156 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS  156 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence            456899999997 67777777788999999999864333321111110        001122332 36899999998433


Q ss_pred             EEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEEEecCCCcc
Q 024436          102 VTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGI  179 (268)
Q Consensus       102 ~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~~~~  179 (268)
                      .+.+ ..++..||||+++++++.||++|+..++|++++++|.   .++++.. ..+.|+||++|. +.+|++++..+.  
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~--  230 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS--  230 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEET-TEEEEEETTTTE--
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeC-CEEEEEecCCCe--
Confidence            3444 3678899999999988899999999999999999873   3455544 235799999984 578999998874  


Q ss_pred             eeeeEeeCc-cceeeeecccc
Q 024436          180 SKLVLSFPW-IGNVLIKLPID  199 (268)
Q Consensus       180 ~~~v~~~~~-~g~~l~~i~~~  199 (268)
                         |.++.+ +|+....+..+
T Consensus       231 ---V~~~~~~~G~~~~~i~~~  248 (318)
T 3sov_A          231 ---ILACNKYTGEGLREIHSD  248 (318)
T ss_dssp             ---EEEEETTTCCSCEEEECC
T ss_pred             ---EEEEECCCCCceEEEeCC
Confidence               655554 67766666554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=3.1e-14  Score=122.76  Aligned_cols=140  Identities=17%  Similarity=0.221  Sum_probs=97.6

Q ss_pred             CCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEE-EEcC--------------CCCC-eeEEEee-----------
Q 024436           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHF-ARTS--------------PNRN-HISVILS-----------   85 (268)
Q Consensus        34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~-~~~~--------------~~~~-~~~~~~~-----------   85 (268)
                      ..|.+++++++ |++++++. .+.|.+++++|+ +..+ ....              +++. |+.....           
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEEEEC-CCCEEEEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence            47999999999 88665544 458999998855 3333 2110              1111 2211100           


Q ss_pred             cCCcceEEEEeCCCCeEEEeecCCCCcceEEEc----cCCCEEEEEecCCcEEEEEEcc-CCCCCceeEEEeCC----CC
Q 024436           86 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS----EDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLP----GF  156 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~s----pdg~~lyva~~~~~~I~~~~~~-~~~~g~~~~~~~l~----g~  156 (268)
                      ....+.|++++++ ++.+.+......|++++++    |||+.||++++..++|++|+++ .+.......+..++    +.
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence            0013789999998 7777777777889999999    9998899999999999999986 22222233444443    56


Q ss_pred             CCceEEcCCCCEEEEEecCC
Q 024436          157 PDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~~~~  176 (268)
                      |+++++|++|++|++....+
T Consensus       228 p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          228 ADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTT
T ss_pred             CCceEECCCCCEEEEEcCCC
Confidence            99999999999999997665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.61  E-value=2.6e-14  Score=127.21  Aligned_cols=162  Identities=17%  Similarity=0.108  Sum_probs=113.5

Q ss_pred             EEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCc-ceEEE
Q 024436           27 QYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKT-GRLMK   94 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~-g~v~~   94 (268)
                      .+...++..|+|+|+++ +|++|+++...++|.+++.+|+....+....          +...++  ++++... ++|++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l--y~td~~~~~~I~r  186 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI--YWTDWGNTPRIEA  186 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE--EEEECSSSCEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE--EEeccCCCCEEEE
Confidence            33334467899999997 5677777778899999999986433322111          111122  2333444 89999


Q ss_pred             EeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEEE
Q 024436           95 YDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus        95 ~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~  172 (268)
                      ++.++...+.+. .++..||||+++|+++.||++|+..++|++++++|.   .++.+.. -.+.|+||+++ +|++|+++
T Consensus       187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td  262 (349)
T 3v64_C          187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTD  262 (349)
T ss_dssp             EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred             EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE-CCEEEEec
Confidence            998844444443 578899999999988899999999999999999873   2344443 22579999995 67999999


Q ss_pred             ecCCCcceeeeEeeC-ccceeeeecccc
Q 024436          173 HSRRKGISKLVLSFP-WIGNVLIKLPID  199 (268)
Q Consensus       173 ~~~~~~~~~~v~~~~-~~g~~l~~i~~~  199 (268)
                      +..+.     |.++. .+|+....+..+
T Consensus       263 ~~~~~-----V~~~~~~~G~~~~~i~~~  285 (349)
T 3v64_C          263 WHTKS-----INSANKFTGKNQEIIRNK  285 (349)
T ss_dssp             TTTTE-----EEEEETTTCCSCEEEECS
T ss_pred             CCCCe-----EEEEEccCCCccEEeccC
Confidence            99874     55554 577766555443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.61  E-value=2.4e-13  Score=119.39  Aligned_cols=164  Identities=18%  Similarity=0.199  Sum_probs=113.2

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc--------------CCCCC-eeEEEee--cC
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--------------SPNRN-HISVILS--GD   87 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------------~~~~~-~~~~~~~--~~   87 (268)
                      +..+..+.  .|.+++++++|+++++.  .+.|+++++++..+..+...              .+++. |+.....  ..
T Consensus        83 ~~~~~~~~--~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~  158 (326)
T 2ghs_A           83 KTVHALPF--MGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAET  158 (326)
T ss_dssp             EEEEECSS--CEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT
T ss_pred             EEEEECCC--cceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCC
Confidence            34444443  68999999999976654  44599998754433333221              11111 2221110  11


Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc--CC-CCCceeEEEeC---CCCCCceE
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TS-KAGTIEIVAQL---PGFPDNIK  161 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~--~~-~~g~~~~~~~l---~g~Pdgia  161 (268)
                      ..+.||+++ + ++++.+......||+++++|||+.||++++..++|++|+++  ++ .+...+.+..+   .+.|+|++
T Consensus       159 ~~~~l~~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~  236 (326)
T 2ghs_A          159 GAGSIYHVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV  236 (326)
T ss_dssp             TCEEEEEEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred             CceEEEEEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence            357899999 4 78877766777899999999999999999999999999986  44 44444555543   35799999


Q ss_pred             EcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          162 RSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       162 ~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      +|++|++|++.+..+.     |.++.+.++.+..+..+
T Consensus       237 ~d~~G~lwva~~~~~~-----v~~~d~~g~~~~~i~~~  269 (326)
T 2ghs_A          237 CDAEGHIWNARWGEGA-----VDRYDTDGNHIARYEVP  269 (326)
T ss_dssp             ECTTSCEEEEEETTTE-----EEEECTTCCEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCE-----EEEECCCCCEEEEEECC
Confidence            9999999999987653     66666677776666554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=1.3e-12  Score=111.17  Aligned_cols=227  Identities=13%  Similarity=0.132  Sum_probs=143.9

Q ss_pred             CEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-CCe-------eEEEeecCCcceEEE
Q 024436           24 GVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-RNH-------ISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~~~-------~~~~~~~~~~g~v~~   94 (268)
                      .+..++++. ...|++++++++|+++++...++.|.+++++++ +..+...... .+.       ...++.....+.|++
T Consensus         4 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A            4 KLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR   82 (299)
T ss_dssp             EEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             eEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence            466777764 468999999999997777666899999998854 3433311111 100       011223344678999


Q ss_pred             EeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEE
Q 024436           95 YDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        95 ~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~v  170 (268)
                      +|++ ++.+...  .....|++|+++++|+ ||+++...+.|++++.++    ....+..  ....|.++++|++|++|+
T Consensus        83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v  156 (299)
T 2z2n_A           83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDDG----KIREYELPNKGSYPSFITLGSDNALWF  156 (299)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             ECCC-CcEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCCC----CEEEecCCCCCCCCceEEEcCCCCEEE
Confidence            9987 6665543  2456899999999995 999998889999998843    2333321  124699999999999999


Q ss_pred             EEecCCCcceeeeEeeCccceeeee-ccccceeeeee-ccc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceece
Q 024436          171 GIHSRRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSS-LVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~g~~l~~-i~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~  241 (268)
                      +....+.     |.++..++++... ++.....+..+ +.+       .... +.+.+++++|+... +..+.  ....+
T Consensus       157 ~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~g~~~~-~~~~~--~~~~~  227 (299)
T 2z2n_A          157 TENQNNA-----IGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIG-NKIGRITTSGEITE-FKIPT--PNARP  227 (299)
T ss_dssp             EETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECTTCCEEE-EECSS--TTCCE
T ss_pred             EeCCCCE-----EEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCC-ceEEEECCCCcEEE-EECCC--CCCCc
Confidence            9876553     5566556665432 22211112111 110       0111 34566777666443 33221  12345


Q ss_pred             EEEEE-eCCEEEEeeCCCCeEEEEeC
Q 024436          242 SEVEE-KDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       242 s~~~~-~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      ..+.. .+|+||+++..++.|.+++.
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             eeEEECCCCCEEEeccCCceEEEECC
Confidence            55554 46899999999999999985

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.60  E-value=2.2e-14  Score=129.45  Aligned_cols=164  Identities=17%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             EEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCc-ceE
Q 024436           25 VVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKT-GRL   92 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~-g~v   92 (268)
                      ++.+...++..|+|+|+++ +|++|+++...++|.+++++|.....+....          +...++  ++++... ++|
T Consensus       150 ~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~l--y~td~~~~~~I  227 (386)
T 3v65_B          150 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI--YWTDWGNTPRI  227 (386)
T ss_dssp             EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEE--EEEECSSSCEE
T ss_pred             cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeE--EEeccCCCCEE
Confidence            3444444567899999997 5666777778899999999886433332111          111222  2333444 899


Q ss_pred             EEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEE
Q 024436           93 MKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        93 ~~~d~~~~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~v  170 (268)
                      +++++++...+.+ ..++..||||+++|+++.||++|+..++|++++++|.   .+..+.. -.+.|+||+++ ++++|+
T Consensus       228 ~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~giav~-~~~ly~  303 (386)
T 3v65_B          228 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYW  303 (386)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---SCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred             EEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---eeEEEEECCCCCceEEEEE-CCEEEE
Confidence            9999984444444 3678899999999988899999999999999999873   2344433 22479999995 578999


Q ss_pred             EEecCCCcceeeeEeeC-ccceeeeecccc
Q 024436          171 GIHSRRKGISKLVLSFP-WIGNVLIKLPID  199 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~-~~g~~l~~i~~~  199 (268)
                      +++..+.     |.++. .+|+.+..+..+
T Consensus       304 td~~~~~-----V~~~~~~~G~~~~~i~~~  328 (386)
T 3v65_B          304 TDWHTKS-----INSANKFTGKNQEIIRNK  328 (386)
T ss_dssp             EETTTTE-----EEEEETTTCCSCEEEECS
T ss_pred             eeCCCCe-----EEEEECCCCcceEEEccC
Confidence            9998874     66654 677766666544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=2e-12  Score=110.08  Aligned_cols=227  Identities=15%  Similarity=0.131  Sum_probs=144.8

Q ss_pred             CEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC-CCCe-------eEEEeecCCcceEEE
Q 024436           24 GVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-NRNH-------ISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~-~~~~-------~~~~~~~~~~g~v~~   94 (268)
                      .+..++++. ...|++++++++|+++++...+++|.+++++++ +..+..... ..+.       ...++.....++|++
T Consensus         9 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~   87 (300)
T 2qc5_A            9 YLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK   87 (300)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             eEEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence            467777764 568999999999998887777899999998855 333321111 1100       011223345678999


Q ss_pred             EeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEE
Q 024436           95 YDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        95 ~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~v  170 (268)
                      +|++ ++.+...  .....|++|+++++|+ ||+++...++|++++.++    ....+..  ....|.++++|++|++|+
T Consensus        88 ~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           88 LSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTADG----TIYEYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS----CEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             ECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCCC----CEEEccCCCCCCCceeEEECCCCCEEE
Confidence            9998 7665443  2347799999999996 999998889999998863    2232221  124699999999999999


Q ss_pred             EEecCCCcceeeeEeeCccceeeee-ccccceeeeee-cc-------ccCCCcEEEEEECCCCCEEEEEEcCCCCceece
Q 024436          171 GIHSRRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSS-LV-------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~g~~l~~-i~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~  241 (268)
                      +....+.     |.++..++++... .+.....+..+ +.       ..... +.+.+++++|+..... .+.+  ...+
T Consensus       162 ~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~~g~~~~~~-~~~~--~~~~  232 (300)
T 2qc5_A          162 TENQNNS-----IGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-NKIGRITTTGEISEYD-IPTP--NARP  232 (300)
T ss_dssp             EETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECTTCCEEEEE-CSST--TCCE
T ss_pred             EecCCCe-----EEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCC-CEEEEEcCCCcEEEEE-CCCC--CCCc
Confidence            9986653     6666666665431 11111111111 11       00111 3466677766655432 2211  2345


Q ss_pred             EEEEE-eCCEEEEeeCCCCeEEEEeC
Q 024436          242 SEVEE-KDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       242 s~~~~-~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      ..+.. .+|+||+++..++.|.+++.
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             eEEEECCCCCEEEeccCCCeEEEECC
Confidence            55554 46889999999999999975

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.59  E-value=1.4e-13  Score=120.74  Aligned_cols=155  Identities=13%  Similarity=0.102  Sum_probs=110.4

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCC-cceEEEEeCCC
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDK-TGRLMKYDPAT   99 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~-~g~v~~~d~~~   99 (268)
                      ++..|+|+|+++ ++++|+++..+++|.+++++|+....+....          +...++  ++.+.. .++|+++++++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l--y~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM--YWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE--EEEECSSSCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE--EEEccCCCCeEEEEcCCC
Confidence            456899999997 5677777778899999999987544333211          111222  223333 37999999884


Q ss_pred             CeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecC
Q 024436          100 KQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       100 ~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ...+.+. ..+..||||+++++++.||++|+..++|++++++|.   ..+++...   ...|+||++|. |++|++++..
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~  228 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  228 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCCcEEEEEEC-CEEEEEECCC
Confidence            3344443 568899999999998899999999999999999873   34555442   24799999984 7999999988


Q ss_pred             CCcceeeeEeeCc-cceeeeecc
Q 024436          176 RKGISKLVLSFPW-IGNVLIKLP  197 (268)
Q Consensus       176 ~~~~~~~v~~~~~-~g~~l~~i~  197 (268)
                      +.     |.++.+ +|+.+..+.
T Consensus       229 ~~-----V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          229 EA-----IFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TE-----EEEEETTTCCCCEEEE
T ss_pred             Ce-----EEEEeCCCCcceEEEe
Confidence            74     666643 676555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.58  E-value=2e-13  Score=130.29  Aligned_cols=146  Identities=15%  Similarity=0.139  Sum_probs=103.9

Q ss_pred             EecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCC------e--eEEEeecCCcceEEEEeCC
Q 024436           28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRN------H--ISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        28 i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~------~--~~~~~~~~~~g~v~~~d~~   98 (268)
                      ++++++..|.++++++ +|.+|+++...++|.|++++|...+.+....-..+      |  ...+.++...++|.+++.+
T Consensus       343 ~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~  422 (619)
T 3s94_A          343 LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN  422 (619)
T ss_dssp             CCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence            3455677899999998 57777788889999999999864444332211111      0  1123455667888888887


Q ss_pred             CCeEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC-CCCEEEEEec
Q 024436           99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~-dG~l~va~~~  174 (268)
                      +...+.+. .++..|++|+++|....||++|... .+|.+++++|..   ...+.. .-..|.||++|+ +++||+++..
T Consensus       423 G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~---~~~l~~~~l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          423 GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD---RVVLVNTSLGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             SCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc---cEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence            44444444 5789999999999866899999875 799999999742   334433 124799999997 5689999877


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       500 ~~  501 (619)
T 3s94_A          500 TD  501 (619)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=4.2e-12  Score=108.05  Aligned_cols=228  Identities=12%  Similarity=0.104  Sum_probs=140.3

Q ss_pred             CCEEEEecC-CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-CCe-------eEEEeecCCcceEE
Q 024436           23 QGVVQYQIE-GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-RNH-------ISVILSGDKTGRLM   93 (268)
Q Consensus        23 ~~~~~i~~~-~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~~~-------~~~~~~~~~~g~v~   93 (268)
                      ..+..+..+ ....|.+++++++|+++++...+++|.+++++++ +..+...... .++       ...++.....+.|+
T Consensus        45 ~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  123 (299)
T 2z2n_A           45 GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG  123 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEE
Confidence            445555544 3467999999999998887777899999998866 3333311111 100       01122333467899


Q ss_pred             EEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEE
Q 024436           94 KYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFW  169 (268)
Q Consensus        94 ~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~  169 (268)
                      ++|++ ++.....  .....|++|+++++|+ +|+++...+.|++|+.++    ....+..  ....|.+|++|++|++|
T Consensus       124 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~  197 (299)
T 2z2n_A          124 RITDD-GKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALW  197 (299)
T ss_dssp             EECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             EECCC-CCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEE
Confidence            99984 6665443  3457899999999995 999998889999999842    2333311  12368999999999999


Q ss_pred             EEEecCCCcceeeeEeeCccceeeee-ccccceeeeeec-c-------ccCCCcEEEEEECCCCCEEEEEEcCCCCceec
Q 024436          170 VGIHSRRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSSL-V-------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRS  240 (268)
Q Consensus       170 va~~~~~~~~~~~v~~~~~~g~~l~~-i~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~  240 (268)
                      ++....+.     |.++.+++++... ++.+...+..+. .       ..... +.+.+++++|+. ..+..+.+  ...
T Consensus       198 v~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~~g~~-~~~~~~~~--~~~  268 (299)
T 2z2n_A          198 FVEIIGNK-----IGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA-NKIGRLTSNNII-EEYPIQIK--SAE  268 (299)
T ss_dssp             EEETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-TEEEEEETTTEE-EEEECSSS--SCC
T ss_pred             EEccCCce-----EEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCC-ceEEEECCCCce-EEEeCCCC--CCc
Confidence            99976653     6666666664331 221112222211 1       00011 235566666643 33332222  123


Q ss_pred             eEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          241 ISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       241 ~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +..++..+|+||+++. .+.+.+++.+
T Consensus       269 ~~~i~~~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          269 PHGICFDGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEEECSSCEEEEET-TTEEEEEEEC
T ss_pred             cceEEecCCCEEEEec-CCcEEEEEcC
Confidence            4444447899999986 6899998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=4.5e-12  Score=107.93  Aligned_cols=226  Identities=15%  Similarity=0.167  Sum_probs=142.5

Q ss_pred             CEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC-CCCe-------eEEEeecCCcceEEE
Q 024436           24 GVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-NRNH-------ISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~-~~~~-------~~~~~~~~~~g~v~~   94 (268)
                      .+..+.++. ...|.+++++++|+++++...+++|.+++++|+. ..+..... ..++       ...++.....+.|++
T Consensus        51 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  129 (300)
T 2qc5_A           51 RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGK  129 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEE
Confidence            445555553 4689999999999988777778999999988663 33322111 1110       011223344678999


Q ss_pred             EeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEE
Q 024436           95 YDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        95 ~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~v  170 (268)
                      +|++ ++....  ......|++|+++++|+ ||+++...++|++|+.++    ....+..  ....|.+|++|++|++|+
T Consensus       130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v  203 (300)
T 2qc5_A          130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWF  203 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             ECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEE
Confidence            9998 766544  23467899999999997 999999889999999853    2233321  113699999999999999


Q ss_pred             EEecCCCcceeeeEeeCccceeeee-ccccceeeeeec-c-------ccCCCcEEEEEECCCCCEEEEEEcCCCCceece
Q 024436          171 GIHSRRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSSL-V-------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~~~g~~l~~-i~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~  241 (268)
                      +....+.     |.++...+++... ++.....+..+. .       ..... +.+.+++++|+... +.-+.+  ...+
T Consensus       204 ~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~~g~~~~-~~~~~~--~~~~  274 (300)
T 2qc5_A          204 VEIMGNK-----IGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA-NQIGRITNDNTIQE-YQLQTE--NAEP  274 (300)
T ss_dssp             EETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-TEEEEECTTSCEEE-EECCST--TCCC
T ss_pred             EccCCCE-----EEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCC-CeEEEECCCCcEEE-EECCcc--CCcc
Confidence            9987653     6666666665432 222222222111 1       00111 34667777766543 322221  1223


Q ss_pred             EEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          242 SEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       242 s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ..++. .+|+||+++. + .|.+++.+
T Consensus       275 ~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          275 HGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            44444 5789999998 6 99998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.56  E-value=3.1e-12  Score=110.90  Aligned_cols=232  Identities=11%  Similarity=0.057  Sum_probs=135.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCe--EEEEEE---------cCCCCCeeEEEeecCCcc-
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRR--WLHFAR---------TSPNRNHISVILSGDKTG-   90 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~--~~~~~~---------~~~~~~~~~~~~~~~~~g-   90 (268)
                      .+..+..+ ...| +++++|||+.+|+.. .+++|+.++.+...  ...+..         .++++.++. . .....+ 
T Consensus        32 ~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~-~~~~~~~  107 (331)
T 3u4y_A           32 ILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-T-VTGLNHP  107 (331)
T ss_dssp             EEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-E-CCCSSSS
T ss_pred             eeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-E-ecCCCCc
Confidence            44555555 4456 999999999666554 58999999985443  222211         123344444 2 212223 


Q ss_pred             -eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcE-EEEEEccCC-CCCcee-EEEeCCCCCCceEEcCCC
Q 024436           91 -RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR-ILRYWLKTS-KAGTIE-IVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus        91 -~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~-I~~~~~~~~-~~g~~~-~~~~l~g~Pdgia~d~dG  166 (268)
                       .|+.+|.++++..........|++++|+|||++||+++...+. |++|+++.. ...... ........|.++++++||
T Consensus       108 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          108 FNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             ccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence             8999999888876666666779999999999999999988777 999998742 111111 111123469999999999


Q ss_pred             C-EEEEEecCCCcceeeeEee-Ccccee---eeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCc----
Q 024436          167 G-FWVGIHSRRKGISKLVLSF-PWIGNV---LIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKM----  237 (268)
Q Consensus       167 ~-l~va~~~~~~~~~~~v~~~-~~~g~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~----  237 (268)
                      + +|++....+.     |..+ ..+++.   +..++.+.......+   +|....++..+.....+.+++-.+|+.    
T Consensus       188 ~~l~v~~~~~~~-----v~v~d~~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          188 NFAFVANLIGNS-----IGILETQNPENITLLNAVGTNNLPGTIVV---SRDGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             SEEEEEETTTTE-----EEEEECSSTTSCEEEEEEECSSCCCCEEE---CTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCCe-----EEEEECCCCcccceeeeccCCCCCceEEE---CCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence            7 8888876653     4434 345666   665554321111111   111011222222111122232222221    


Q ss_pred             ------------eeceEEEE--EeCCEEEEeeCCCCeEEEEeCC
Q 024436          238 ------------WRSISEVE--EKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       238 ------------~~~~s~~~--~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                                  ......+.  ..+.+||+++..++.|.+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence                        01111122  2456799999999999999876

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.56  E-value=3.8e-13  Score=128.39  Aligned_cols=195  Identities=11%  Similarity=0.032  Sum_probs=122.4

Q ss_pred             EecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeE-EEEEEcCCCCC------e--eEEEeecCCcceEEEEeC
Q 024436           28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRN------H--ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        28 i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~-~~~~~~~~~~~------~--~~~~~~~~~~g~v~~~d~   97 (268)
                      +.++.+..|.++++++ ++.+|+++..+++|.|++++|... ..+...+-..+      +  -..+.++...++|.+++.
T Consensus        34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence            3444577899999998 566667788899999999988631 22211110111      0  112345567789999999


Q ss_pred             CCCeEEEee-cCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCC-CCEEEEEe
Q 024436           98 ATKQVTVLL-GNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-GGFWVGIH  173 (268)
Q Consensus        98 ~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d-G~l~va~~  173 (268)
                      ++...+.+. ..+..|++|+++|.+..||+||.. ..+|++.+++|..   ...+.. --..|.||++|++ ++||+++.
T Consensus       114 dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~~P~Glald~~~~~LY~aD~  190 (619)
T 3s94_A          114 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADA  190 (619)
T ss_dssp             TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---eEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence            854445554 688999999999987799999976 5799999999742   334432 1236999999985 67999987


Q ss_pred             cCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      ..+.     |.++..+|                                  .-...+....   +..+.+++...++||+
T Consensus       191 ~~~~-----I~~~~~dG----------------------------------~~~~~~~~~~---~~~P~gi~~~~~~ly~  228 (619)
T 3s94_A          191 KLNF-----IHKSNLDG----------------------------------TNRQAVVKGS---LPHPFALTLFEDILYW  228 (619)
T ss_dssp             TTCC-----EEEESSSC----------------------------------CEEC------------CCCEEESSSEEEE
T ss_pred             CCCe-----EEEecCCC----------------------------------CccEEEEeCC---CCCceEEEEeCCEEEE
Confidence            6653     44444333                                  2222221100   1223344445668888


Q ss_pred             eeCCCCeEEEEeCC
Q 024436          254 GSVNMPYAGLYNYS  267 (268)
Q Consensus       254 ~s~~~~~v~~~~~~  267 (268)
                      +++.+++|.+++..
T Consensus       229 td~~~~~V~~~d~~  242 (619)
T 3s94_A          229 TDWSTHSILACNKY  242 (619)
T ss_dssp             ECTTTCSEEEEESS
T ss_pred             ecCCCCEEEEEECC
Confidence            88888888888754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.56  E-value=5.5e-13  Score=113.84  Aligned_cols=176  Identities=15%  Similarity=0.240  Sum_probs=118.6

Q ss_pred             CCCcceEEE-CCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           33 AIGPESLAF-DALGEGPYTGVS-DGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        33 ~~~P~gia~-~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      +..|.++++ +++|++++++.. +++|.+++++|+....+...          .+++.   .++.....++|+++|+++.
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTTSC
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC---EEEEECCCCEEEEEcCCCC
Confidence            357999999 688987777654 89999999888754433211          11111   2233345678999998743


Q ss_pred             eEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .+..+.  ..+..|++|+++|||+ +||+++.+++|++|+.++..   ...+...  ...|.+|++|++|++|++....+
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             EEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence            344433  4567899999999995 99999999999999987521   2223211  14699999999999999998764


Q ss_pred             CcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEE
Q 024436          177 KGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI  229 (268)
Q Consensus       177 ~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  229 (268)
                      .+    |.++.+.++.+..+.....         ... ...+.++++|+++..
T Consensus       229 ~~----i~~~~~~g~~~~~~~~~~~---------~~~-~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          229 FN----LTIFTQDGQLISALESKVK---------HAQ-CFDVALMDDGSVVLA  267 (286)
T ss_dssp             CE----EEEECTTSCEEEEEEESSC---------CSC-EEEEEEETTTEEEEE
T ss_pred             EE----EEEECCCCCEEEEEcccCC---------CCc-ceeEEECCCCcEEEE
Confidence            12    7778888887776654311         111 235666777765444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=1.5e-11  Score=107.02  Aligned_cols=226  Identities=10%  Similarity=0.076  Sum_probs=135.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeC-------CCeEEEEeCCCCeEE-EEEEc--------CCCCCeeEEEeecC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS-------DGRIIKWHQDQRRWL-HFART--------SPNRNHISVILSGD   87 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~-------~g~I~~~~~~g~~~~-~~~~~--------~~~~~~~~~~~~~~   87 (268)
                      .+...+++.  +|.+++++|||+.+|+...       +++|..++.++.... .+...        ++++.++  +....
T Consensus        33 ~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l--~v~~~  108 (353)
T 3vgz_A           33 EMLRKAVGK--GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTL--WFGNT  108 (353)
T ss_dssp             CEEEEEEES--SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEE--EEEET
T ss_pred             hhhhhhhcc--CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEE--EEEec
Confidence            566667665  8999999999998887663       578999998644322 22211        1222322  23344


Q ss_pred             CcceEEEEeCCCCeEEEeecC--CC--------CcceEEEccCCCEEEEEec-CCcEEEEEEccCCCCCceeEEEe-CCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGN--LS--------FPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQ-LPG  155 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~--~~--------~pnGia~spdg~~lyva~~-~~~~I~~~~~~~~~~g~~~~~~~-l~g  155 (268)
                      ..+.|+.+|+++++.......  ..        .|++++++|||+++|+++. ..++|++|++++++   ...... ...
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~  185 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK---LKTAIQNTGK  185 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE---EEEEECCCCT
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc---eEEEecCCCC
Confidence            567999999988876443321  11        2789999999999999984 56889999987432   211122 223


Q ss_pred             CCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccce----eeee-eccc--------cCCCcEEEEEE
Q 024436          156 FPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIV----KIHS-SLVK--------LSGNGGMAMRI  220 (268)
Q Consensus       156 ~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~----~~~~-~~~~--------~~~~~~~~~~~  220 (268)
                      .|.+++++++|+ +|++...+  .    +.. ...+++.+..++.+..    .+.. .+.+        .... +.+..+
T Consensus       186 ~~~~~~~s~dg~~l~~~~~~~--~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~  258 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNADG--E----LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-AEVLVV  258 (353)
T ss_dssp             TCCCCEEETTTTEEEEECTTS--E----EEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-SEEEEE
T ss_pred             ccceEEECCCCCEEEEEcCCC--e----EEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-CEEEEE
Confidence            599999999997 66665533  2    333 3456777766654211    1111 1110        0011 223344


Q ss_pred             CC-CCCEEEEEEcCCCCceeceEEEEE-eCCEEEEeeCCCCeEEEEeCCC
Q 024436          221 SE-QGNVLEILEEIGRKMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       221 ~~-~G~~~~~~~~~~g~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      |. +++.+..+..+.  .   ...+.. .+++||+++..++.|.++++++
T Consensus       259 d~~~~~~~~~~~~~~--~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          259 DTRNGNILAKVAAPE--S---LAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             ETTTCCEEEEEECSS--C---CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCcEEEEEEcCC--C---ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            44 244444443221  1   112222 3557999999999999999764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.55  E-value=6.7e-13  Score=118.24  Aligned_cols=120  Identities=21%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      .-.++++.-+ +..|++++++|||++|+++ ..|+|++++ +|+ ...++.              .+             
T Consensus        20 ~~~~~~va~~-l~~P~~ia~~pdG~l~V~e-~~g~I~~i~-~g~-~~~~~~--------------~~-------------   68 (352)
T 2ism_A           20 GLRVEEVVGG-LEVPWALAFLPDGGMLIAE-RPGRIRLFR-EGR-LSTYAE--------------LS-------------   68 (352)
T ss_dssp             CCCEEEEECC-CSCEEEEEECTTSCEEEEE-TTTEEEEEE-TTE-EEEEEE--------------CC-------------
T ss_pred             CcEEEEEECC-CCCceEEEEcCCCeEEEEe-CCCeEEEEE-CCC-ccEeec--------------ce-------------
Confidence            3377777765 7899999999999966665 459999988 554 122110              00             


Q ss_pred             EEEeecCCCCcceEEEccC---CCEEEEEecCC-----cEEEEEEccCCCCCceeEEEe-CC------CCCCceEEcCCC
Q 024436          102 VTVLLGNLSFPNGVALSED---GNYILLAETTS-----CRILRYWLKTSKAGTIEIVAQ-LP------GFPDNIKRSPRG  166 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spd---g~~lyva~~~~-----~~I~~~~~~~~~~g~~~~~~~-l~------g~Pdgia~d~dG  166 (268)
                        +...+...|+||+++||   ++.|||+++..     ++|++|+.+++.+...+++.+ ++      ..|.+|++++||
T Consensus        69 --v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG  146 (352)
T 2ism_A           69 --VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG  146 (352)
T ss_dssp             --CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS
T ss_pred             --EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC
Confidence              12334577999999999   66899999864     899999998644333344332 43      258899999999


Q ss_pred             CEEEEEec
Q 024436          167 GFWVGIHS  174 (268)
Q Consensus       167 ~l~va~~~  174 (268)
                      +||++...
T Consensus       147 ~Lyv~~G~  154 (352)
T 2ism_A          147 MLYVTTGE  154 (352)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEECC
Confidence            99999754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.54  E-value=5.8e-13  Score=120.66  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=112.6

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecC-CcceEEEEeCCC
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGD-KTGRLMKYDPAT   99 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~-~~g~v~~~d~~~   99 (268)
                      .+..|+|+|+++ .+++|+++...++|.+++++|+....+....          +...++  ++++. ..++|++++.++
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l--y~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM--YWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE--EEEECSSSCCEEEEETTS
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE--EEEeCCCCCEEEEEeCCC
Confidence            467899999998 6777778888999999999987544433211          111222  22332 347899999984


Q ss_pred             CeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecC
Q 024436          100 KQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       100 ~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ...+.+ ..++..||||+++++++.||++|+..++|++++++|.   .++.+...   -..|.||+++. +++|++++..
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~  310 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  310 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSSTTSSEEEEEEET-TEEEEEESSS
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCC
Confidence            444444 4578999999999998899999999999999999873   34455432   24799999964 6899999988


Q ss_pred             CCcceeeeEee-Cccceeeeecccc
Q 024436          176 RKGISKLVLSF-PWIGNVLIKLPID  199 (268)
Q Consensus       176 ~~~~~~~v~~~-~~~g~~l~~i~~~  199 (268)
                      +.     |.++ ..+|+.+..+..+
T Consensus       311 ~~-----V~~~~~~~G~~~~~i~~~  330 (400)
T 3p5b_L          311 EA-----IFSANRLTGSDVNLLAEN  330 (400)
T ss_dssp             CS-----EEEEESSSCCCCEEEECS
T ss_pred             Ce-----EEEEEcCCCCceEEEecC
Confidence            74     5555 3677766666544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=2.3e-12  Score=119.26  Aligned_cols=227  Identities=11%  Similarity=0.043  Sum_probs=139.2

Q ss_pred             CCCcceEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC---CCCee---------------EEEeecCCc---
Q 024436           33 AIGPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSP---NRNHI---------------SVILSGDKT---   89 (268)
Q Consensus        33 ~~~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~---~~~~~---------------~~~~~~~~~---   89 (268)
                      +..|.+++++|+  +++|++....++|.+++++++.+..+...+.   ++++.               ..++.+...   
T Consensus       138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            567999999983  6766666667899999988765555543321   01110               011222221   


Q ss_pred             ---ceEEEEeCCC-CeE------EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-------CCCC------C-
Q 024436           90 ---GRLMKYDPAT-KQV------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-------TSKA------G-  145 (268)
Q Consensus        90 ---g~v~~~d~~~-~~~------~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-------~~~~------g-  145 (268)
                         ..|+.++.+. |++      ..+. .+..|+|++++|++++||+++..+++|++|+++       ++..      . 
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence               2477776543 233      2233 467899999999777899999999999999997       4432      0 


Q ss_pred             --ceeEEEeCC--CCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccc---ee-----eeec-cc-----------cc
Q 024436          146 --TIEIVAQLP--GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIG---NV-----LIKL-PI-----------DI  200 (268)
Q Consensus       146 --~~~~~~~l~--g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g---~~-----l~~i-~~-----------~~  200 (268)
                        ..+.+..++  +.|.+|+++++|+ ||+++..+++     |.++..++   ++     +..- ..           .+
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-----I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-----FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-----EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-----EEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence              022333332  4689999999998 8999998874     44433322   11     1111 00           00


Q ss_pred             eeee--eecc---------------ccCCCcEEEEEECCCCCEEEEEEcC--------------CCC-----ceeceEEE
Q 024436          201 VKIH--SSLV---------------KLSGNGGMAMRISEQGNVLEILEEI--------------GRK-----MWRSISEV  244 (268)
Q Consensus       201 ~~~~--~~~~---------------~~~~~~~~~~~~~~~G~~~~~~~~~--------------~g~-----~~~~~s~~  244 (268)
                      ..+.  .+..               ....  ..+.+++++|.+....-..              +|.     .+..++++
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N--~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLN--FCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGG--TEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCC--CEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            0111  1110               1111  3566788889766555321              221     35667887


Q ss_pred             EEe--CCEEEEeeCCCCeEEEEeCC
Q 024436          245 EEK--DGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       245 ~~~--~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +..  +|.|||+...+++|-+++++
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECC
Confidence            765  38999999999999999865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=7.2e-13  Score=111.76  Aligned_cols=174  Identities=19%  Similarity=0.277  Sum_probs=113.3

Q ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCC
Q 024436           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      ......|.+++++++|++|+++. +++|.++++++.....+...          .+++.   .++.....++|++++..+
T Consensus        63 ~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~---l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           63 FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA---VYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC---EEEEEGGGTEEEEECTTC
T ss_pred             eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC---EEEEECCCCEEEEEECCC
Confidence            34456899999999999766665 89999999887643322111          11111   122333457888887764


Q ss_pred             CeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-CCCCceEEcCCCCEEEEEecCCC
Q 024436          100 KQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       100 ~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      ..... ...++..|++|+++++|+ ||+++..+++|++|+.++..   ........ ..|.+|++|++|++|++....+.
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred             ceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCc
Confidence            43332 234567899999999997 99999988999999987532   11111111 46999999999999999987764


Q ss_pred             cceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEE
Q 024436          178 GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVL  227 (268)
Q Consensus       178 ~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  227 (268)
                           |.++...++....++..          .... ...+.++++|++.
T Consensus       215 -----v~~~~~~~~~~~~~~~~----------~~~~-p~~i~~~~~g~l~  248 (270)
T 1rwi_B          215 -----VVKLLAGSTTSTVLPFT----------GLNT-PLAVAVDSDRTVY  248 (270)
T ss_dssp             -----EEEECTTCSCCEECCCC----------SCSC-EEEEEECTTCCEE
T ss_pred             -----EEEEcCCCCcceeeccC----------CCCC-ceeEEECCCCCEE
Confidence                 66776666543332211          0011 3456777777643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=3.1e-12  Score=109.86  Aligned_cols=218  Identities=12%  Similarity=0.145  Sum_probs=136.9

Q ss_pred             cCCCEEEEecCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCCeeEEEeecCCcc
Q 024436           21 STQGVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRNHISVILSGDKTG   90 (268)
Q Consensus        21 ~~~~~~~i~~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~g   90 (268)
                      ....++.+.-+ ...|+|++++|+|+ +++++..+++|.++++++. ...+...         .+++.   .+......+
T Consensus        16 ~~~~~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~---l~v~~~~~~   90 (296)
T 3e5z_A           16 AGAEARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH---LIACSHGLR   90 (296)
T ss_dssp             TTCCCEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCC---EEEEETTTT
T ss_pred             CCCcEEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCc---EEEEecCCC
Confidence            34466777754 67899999999998 8888888999999999876 4444321         11222   122334457


Q ss_pred             eEEEEeCCCCeEEEeec-----CCCCcceEEEccCCCEEEEEec-----------------CCcEEEEEEccCCCCCcee
Q 024436           91 RLMKYDPATKQVTVLLG-----NLSFPNGVALSEDGNYILLAET-----------------TSCRILRYWLKTSKAGTIE  148 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~-----~~~~pnGia~spdg~~lyva~~-----------------~~~~I~~~~~~~~~~g~~~  148 (268)
                      .|+++|+++++.+.+..     ....||+++++|||+ ||+++.                 ..++|++++.++    ...
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g----~~~  165 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG----TLS  165 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS----CEE
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCC----CEE
Confidence            89999997788776542     245789999999996 999864                 245899998763    233


Q ss_pred             EEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc--ccee---eeeccccceeeeeeccccCCCcEEEEEECCC
Q 024436          149 IVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW--IGNV---LIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ  223 (268)
Q Consensus       149 ~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~--~g~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (268)
                      .+......|.|+++++||+++++....+ +    |.++..  .|++   ...+....         ..|.   .+.++++
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~-~----i~~~~~~~~g~~~~~~~~~~~~~---------~~p~---~i~~d~~  228 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLLVSDTGDN-A----THRYCLNARGETEYQGVHFTVEP---------GKTD---GLRVDAG  228 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTT-E----EEEEEECSSSCEEEEEEEECCSS---------SCCC---SEEEBTT
T ss_pred             EeecCCCCCccEEECCCCCEEEEeCCCC-e----EEEEEECCCCcCcCCCeEeeCCC---------CCCC---eEEECCC
Confidence            3433334799999999999777776554 3    444432  3444   11110000         1111   2344444


Q ss_pred             CCE-------EEEEEcCCCCceec------eEEEEE---eCCEEEEeeCCCCeEEEEeCCC
Q 024436          224 GNV-------LEILEEIGRKMWRS------ISEVEE---KDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       224 G~~-------~~~~~~~~g~~~~~------~s~~~~---~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      |++       +..+ +++|+.+..      ++.++.   .+++||+++  .+.+.+++.++
T Consensus       229 G~l~v~~~~~v~~~-~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t--~~~l~~~~~~~  286 (296)
T 3e5z_A          229 GLIWASAGDGVHVL-TPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTV--STEFWSIETNV  286 (296)
T ss_dssp             SCEEEEETTEEEEE-CTTSCEEEEEECSSCCCEEEEESTTSCEEEEEE--TTEEEEEECSC
T ss_pred             CCEEEEcCCeEEEE-CCCCCEEEEEECCCCceeEEEECCCCCEEEEEc--CCeEEEEEccc
Confidence            443       3333 345654322      344444   235799997  99999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=1.1e-12  Score=115.29  Aligned_cols=166  Identities=12%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             EEEEecCCC----CCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCC--CC----CeeEEEeecCC-----
Q 024436           25 VVQYQIEGA----IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSP--NR----NHISVILSGDK-----   88 (268)
Q Consensus        25 ~~~i~~~~~----~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~--~~----~~~~~~~~~~~-----   88 (268)
                      ...++++..    ..|+++++ .++++|+++. .+++|..+++....+......+.  ..    +-...++....     
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCC
Confidence            345666542    27999999 5666555555 38999999987543333222211  11    00011222222     


Q ss_pred             -----cceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCce
Q 024436           89 -----TGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNI  160 (268)
Q Consensus        89 -----~g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgi  160 (268)
                           .+.|+++|++++++.....  ....|++|+++||+++||+++.   .|++|+.+++++.. ..+... ...|+||
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi  272 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGL  272 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEE
T ss_pred             ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEE
Confidence                 3789999999888764432  2357999999999999999986   89999987644321 112121 2479999


Q ss_pred             EEcC-CCCEEEEE----ecCCCcceeeeEeeCccceeeeeccccc
Q 024436          161 KRSP-RGGFWVGI----HSRRKGISKLVLSFPWIGNVLIKLPIDI  200 (268)
Q Consensus       161 a~d~-dG~l~va~----~~~~~~~~~~v~~~~~~g~~l~~i~~~~  200 (268)
                      ++|| +|+|||+.    ...+.     |.+|.+.|+++.+++.+.
T Consensus       273 ~vdp~~g~lyva~~~~y~~~~~-----V~v~d~~g~~~~~i~~G~  312 (328)
T 3dsm_A          273 TVNPNNGEVYVADAIDYQQQGI-----VYRYSPQGKLIDEFYVGI  312 (328)
T ss_dssp             EECTTTCCEEEEECTTSSSEEE-----EEEECTTCCEEEEEEEEE
T ss_pred             EEcCCCCeEEEEcccccccCCE-----EEEECCCCCEEEEEEecc
Confidence            9998 67899999    44443     777777788888877653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.51  E-value=8e-14  Score=134.86  Aligned_cols=194  Identities=11%  Similarity=0.057  Sum_probs=123.2

Q ss_pred             CCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCC----CeEEEEEEc---CCCC---Ce--eEEEeecCCcceEEEEeC
Q 024436           31 EGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQ----RRWLHFART---SPNR---NH--ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        31 ~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g----~~~~~~~~~---~~~~---~~--~~~~~~~~~~g~v~~~d~   97 (268)
                      +.+..|++++++++ +.+|+++...++|+++++++    .....+...   .+.+   .+  ...++.+...++|+++++
T Consensus       403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            34568999999985 55566667789999999876    211111100   0111   00  012335556789999999


Q ss_pred             CCCeEEEee-cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCC-CCEEEEEe
Q 024436           98 ATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-GGFWVGIH  173 (268)
Q Consensus        98 ~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d-G~l~va~~  173 (268)
                      ++...+.+. .++..|+||+++|++++||+++... ++|++++++|..   ..++.. .-..|.||++|++ ++||+++.
T Consensus       483 dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          483 KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            855555554 4678899999999877899999876 899999998632   233322 1247999999986 57999997


Q ss_pred             cCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      ..+.     |.++.                                  .+|....++.... ..+..+.+++..+++||+
T Consensus       560 ~~~~-----I~~~d----------------------------------~dG~~~~~~~~~~-~~~~~P~glavd~~~lyw  599 (699)
T 1n7d_A          560 KLHS-----ISSID----------------------------------VNGGNRKTILEDE-KRLAHPFSLAVFEDKVFW  599 (699)
T ss_dssp             TTTE-----EEEEC----------------------------------SSSSCCEEECCCS-SSCSSCCCCEEETTEEEE
T ss_pred             CCCe-----EEEEc----------------------------------cCCCceEEEEecC-CcCCCceEeEEECCEEEE
Confidence            6652     33333                                  3332222221111 113334455556678888


Q ss_pred             eeCCCCeEEEEeCC
Q 024436          254 GSVNMPYAGLYNYS  267 (268)
Q Consensus       254 ~s~~~~~v~~~~~~  267 (268)
                      +.+..++|.+++..
T Consensus       600 td~~~~~V~~~d~~  613 (699)
T 1n7d_A          600 TDIINEAIFSANRL  613 (699)
T ss_dssp             ECSTTTCEEEEETT
T ss_pred             EeCCCCeEEEEEcc
Confidence            88888888888753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=9.3e-13  Score=120.43  Aligned_cols=148  Identities=11%  Similarity=0.067  Sum_probs=96.6

Q ss_pred             CCCCcceEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---------CCCCeeE--EEeecCCcceEEEEeCC
Q 024436           32 GAIGPESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS---------PNRNHIS--VILSGDKTGRLMKYDPA   98 (268)
Q Consensus        32 ~~~~P~gia~~~--dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---------~~~~~~~--~~~~~~~~g~v~~~d~~   98 (268)
                      ++..|.+++++|  +|.+|+++.. ++|.++++++..+..+....         +.+++++  +.........++.++++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            467899999997  4776666655 99999999886555443211         1112121  11111112246666655


Q ss_pred             CCeEE--EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCC-EEEEEe
Q 024436           99 TKQVT--VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus        99 ~~~~~--~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~-l~va~~  173 (268)
                       +...  .....+..|+|++++|++..|||++..+++|++|+.++..   ...+...+  ..|.+|++|++|+ ||+++.
T Consensus       214 -g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          214 -SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             -GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             -CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence             3222  2223578899999999444699999999999999998532   22333332  4699999999998 999998


Q ss_pred             cCCCcceeeeEeeCcc
Q 024436          174 SRRKGISKLVLSFPWI  189 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~  189 (268)
                      ..++     |.++..+
T Consensus       290 ~~~~-----I~~~~~d  300 (430)
T 3tc9_A          290 NQHY-----ILRSDYD  300 (430)
T ss_dssp             TTTE-----EEEEEEE
T ss_pred             CCCE-----EEEEeCC
Confidence            8874     5555433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=2.1e-11  Score=105.30  Aligned_cols=213  Identities=9%  Similarity=0.071  Sum_probs=131.7

Q ss_pred             EEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEE--------cCCCCCeeEEEeecCCcceEEEEe
Q 024436           26 VQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFAR--------TSPNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      +.+.-.+..-+||++++++ +.+++++..+++|+++++++.....+..        ..+++.+..   ..  ...|+++|
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v---~~--~~~l~~~d   79 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA---TI--GTKFCALN   79 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE---EE--TTEEEEEE
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE---EE--CCeEEEEE
Confidence            3433444678999999994 6778888889999999987654332211        112222211   11  35899999


Q ss_pred             CCCCeEEEeecC-----CCCcceEEEccCCCEEEEEec-----------CCcEEEEEEccCCCCCceeEEEeCCCCCCce
Q 024436           97 PATKQVTVLLGN-----LSFPNGVALSEDGNYILLAET-----------TSCRILRYWLKTSKAGTIEIVAQLPGFPDNI  160 (268)
Q Consensus        97 ~~~~~~~~~~~~-----~~~pnGia~spdg~~lyva~~-----------~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgi  160 (268)
                      +++++++.+...     ...||+++++|||+ +|+++.           ..++|++++.++    ....+......|+|+
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----HVKKYFDQVDISNGL  154 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEEEEEEESBEEEE
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----CEEEEeeccccccce
Confidence            988888766532     34689999999997 888874           345888888754    223332212369999


Q ss_pred             EEcCCCC-EEEEEecCCCcceeeeEeeC---cccee-----eeeccccceeeee-ecc-------ccCCCcEEEEEECCC
Q 024436          161 KRSPRGG-FWVGIHSRRKGISKLVLSFP---WIGNV-----LIKLPIDIVKIHS-SLV-------KLSGNGGMAMRISEQ  223 (268)
Q Consensus       161 a~d~dG~-l~va~~~~~~~~~~~v~~~~---~~g~~-----l~~i~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~  223 (268)
                      ++++||+ ||++....+ +    |.++.   .+|++     +..++.....+.. ++.       ..... +.+.+++++
T Consensus       155 ~~spdg~~lyv~~~~~~-~----i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~~~d~~  228 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSY-S----VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVIRLDPV  228 (297)
T ss_dssp             EECTTSCEEEEEEGGGT-E----EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEEEECTT
T ss_pred             EEcCCCCEEEEecCCCC-c----EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEEEEcCC
Confidence            9999996 889887665 3    44442   34432     2222211001110 110       11111 357888886


Q ss_pred             -CCEEEEEEcCCCCceeceEEEEEe---CCEEEEeeCCC
Q 024436          224 -GNVLEILEEIGRKMWRSISEVEEK---DGNLWIGSVNM  258 (268)
Q Consensus       224 -G~~~~~~~~~~g~~~~~~s~~~~~---~g~Lyv~s~~~  258 (268)
                       |+++..+..+.    ..++.++..   +++|||++...
T Consensus       229 tG~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          229 TGKRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TCCEEEEEECSS----SBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CceEEEEEECCC----CCceEEEEeCCCCCEEEEEcCCc
Confidence             88888887652    335565553   36899998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.50  E-value=1.1e-11  Score=105.98  Aligned_cols=164  Identities=10%  Similarity=0.040  Sum_probs=107.1

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEe---CCCeEEEEeCCCCeEEEEEEcCCCCCee--------EEEeecCCcce
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV---SDGRIIKWHQDQRRWLHFARTSPNRNHI--------SVILSGDKTGR   91 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~---~~g~I~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~   91 (268)
                      +-++++++++-..|+|+++++||. +|++.   .+++|..+++............ .+.+.        ..+......+.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~~fgeGi~~~g~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMD-DSYFGEGLTLLNEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEETTCSE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecC-CCcceEEEEEeCCEEEEEEecCCE
Confidence            367889999755789999999986 55543   3689999998643333322221 11111        11223346789


Q ss_pred             EEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE--eC--C-CCCCceEEcCCC
Q 024436           92 LMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--QL--P-GFPDNIKRSPRG  166 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~--~l--~-g~Pdgia~d~dG  166 (268)
                      ++++|+++.++..-.... .|.|..+++||++||+++ .+++|+++|.++.+.  ...+.  .-  | ..|+++.+. +|
T Consensus        88 v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg  162 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NG  162 (266)
T ss_dssp             EEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CC
Confidence            999999887765444322 578899999999999999 689999999875321  11111  11  1 247788888 78


Q ss_pred             CEEEEEecCCCcceeeeEe-eCccceeeeeccc
Q 024436          167 GFWVGIHSRRKGISKLVLS-FPWIGNVLIKLPI  198 (268)
Q Consensus       167 ~l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~  198 (268)
                      .+|++.+..+.     |.+ .+.+++++..+++
T Consensus       163 ~lyvn~~~~~~-----V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          163 EVWANIWQTDC-----IARISAKDGTLLGWILL  190 (266)
T ss_dssp             EEEEEETTSSE-----EEEEETTTCCEEEEEEC
T ss_pred             EEEEecCCCCe-----EEEEECCCCcEEEEEEC
Confidence            99999887653     333 4556666666665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.49  E-value=3.6e-11  Score=104.40  Aligned_cols=216  Identities=13%  Similarity=0.029  Sum_probs=129.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCC-eeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRN-HISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~-~~~~~~~~~~~g~v~   93 (268)
                      -+..++.+  ..|++++++++|++|+++..+++|++++++++. ..+...         .+++. |+.+  ......+|+
T Consensus        24 ~~~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG~l~vad--~~~~~~~v~   98 (306)
T 2p4o_A           24 IITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATG--WNADSIPVV   98 (306)
T ss_dssp             EEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEE--ECTTSCEEE
T ss_pred             EeEeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcCCCcEEEEe--ccCCcceEE
Confidence            44555555  489999999999988888889999999999864 222211         12222 2221  112234699


Q ss_pred             EEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE--------e-CC--CCCCce
Q 024436           94 KYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--------Q-LP--GFPDNI  160 (268)
Q Consensus        94 ~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~--------~-l~--g~Pdgi  160 (268)
                      ++|+.+++++.+.  ....+++|++..+++ .+|+++..+++|++++.+++.   .+++.        . ..  ..|+||
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~---~~v~~~~~~~~~~~~~~~~~~pngi  174 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS---GSIWLEHPMLARSNSESVFPAANGL  174 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTE---EEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCc---EeEEEECCccccccccCCCCcCCCc
Confidence            9998778877654  346789999998765 799999989999999986421   11210        0 01  258898


Q ss_pred             EEcCCC-CEEEEEecCCCcceeeeEeeCcc--cee-----eeecccccee-ee---eeccccCCCcEEEEEECCCCCEEE
Q 024436          161 KRSPRG-GFWVGIHSRRKGISKLVLSFPWI--GNV-----LIKLPIDIVK-IH---SSLVKLSGNGGMAMRISEQGNVLE  228 (268)
Q Consensus       161 a~d~dG-~l~va~~~~~~~~~~~v~~~~~~--g~~-----l~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~G~~~~  228 (268)
                        ++|| .||+++...+.     |.++...  |++     +.....|..- +.   .++-..... ..+.+++++|+...
T Consensus       175 --s~dg~~lyv~d~~~~~-----I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~-~~V~~~~~~G~~~~  246 (306)
T 2p4o_A          175 --KRFGNFLYVSNTEKML-----LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY-NSVVRIAPDRSTTI  246 (306)
T ss_dssp             --EEETTEEEEEETTTTE-----EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT-CCEEEECTTCCEEE
T ss_pred             --CcCCCEEEEEeCCCCE-----EEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCC-CeEEEECCCCCEEE
Confidence              6666 59999988764     5555433  321     2221111100 00   001011112 34777888887654


Q ss_pred             EEEcCCCCceeceEEEEEe-----CCEEEEeeCCC
Q 024436          229 ILEEIGRKMWRSISEVEEK-----DGNLWIGSVNM  258 (268)
Q Consensus       229 ~~~~~~g~~~~~~s~~~~~-----~g~Lyv~s~~~  258 (268)
                      ...-+.+  +..++.++..     +++|||++..+
T Consensus       247 ~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             Eeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence            3322211  3456776653     37999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.48  E-value=3e-11  Score=105.99  Aligned_cols=218  Identities=11%  Similarity=0.044  Sum_probs=130.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCee------EEEeecCCcceEEEEeCCCCeEEEee
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHI------SVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~------~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      ..|++++++ ++++|++...++.|..+++. ++....+. .......+      ..+......+.|+++|++++++....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            368999985 46656666668999999986 44323332 11110000      11223224689999999988876544


Q ss_pred             cCCC------CcceEEEccCCCEEEEEec-CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC----
Q 024436          107 GNLS------FPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR----  175 (268)
Q Consensus       107 ~~~~------~pnGia~spdg~~lyva~~-~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~----  175 (268)
                      ....      .|++|++  +++.|||++. ..++|.++++++.+   ..........|.++++|++|++|++....    
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~---~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK---VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE---EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe---EEEEEEcCCCccceEEcCCCCEEEEECCCccCC
Confidence            3334      8999999  4558999998 48899999987532   22122334579999999999999998764    


Q ss_pred             -----CCcceeeeEee-Cccceeeeeccccc-eeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCc---------ee
Q 024436          176 -----RKGISKLVLSF-PWIGNVLIKLPIDI-VKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKM---------WR  239 (268)
Q Consensus       176 -----~~~~~~~v~~~-~~~g~~l~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~---------~~  239 (268)
                           ...    |.++ +.++++...+..+. ..+..+.  .++....++..+.   -+..++...++.         ..
T Consensus       197 ~~~~~~~~----v~~id~~t~~v~~~~~~~~g~~p~~la--~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~  267 (328)
T 3dsm_A          197 PYGYEAPS----LYRIDAETFTVEKQFKFKLGDWPSEVQ--LNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDT  267 (328)
T ss_dssp             SSCBCCCE----EEEEETTTTEEEEEEECCTTCCCEEEE--ECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSS
T ss_pred             ccccCCce----EEEEECCCCeEEEEEecCCCCCceeEE--EecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCC
Confidence                 112    5454 45677777766531 1111111  0111022333332   122333333331         12


Q ss_pred             ceEEEEE--eCCEEEEee----CCCCeEEEEeCC
Q 024436          240 SISEVEE--KDGNLWIGS----VNMPYAGLYNYS  267 (268)
Q Consensus       240 ~~s~~~~--~~g~Lyv~s----~~~~~v~~~~~~  267 (268)
                      .+..++.  .+++||+++    ..+++|.+++.+
T Consensus       268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            3555554  378999999    889999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=3.7e-12  Score=111.68  Aligned_cols=176  Identities=17%  Similarity=0.191  Sum_probs=111.2

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEEc------------------CC-CCCeeEEEeecC-C
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFART------------------SP-NRNHISVILSGD-K   88 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~--~~~~~~~~------------------~~-~~~~~~~~~~~~-~   88 (268)
                      +.+..|.+++++++|++|+++..+++|.+++++|+  .+..+...                  .+ ++   ..++.+. .
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g---~lyv~d~~~  164 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG---AVFVSDGYC  164 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC---CEEEEECSS
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC---eEEEEeCCC
Confidence            44678999999999998888888999999999886  33333211                  11 11   1223343 5


Q ss_pred             cceEEEEeCCCCeEEEee-----------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCC
Q 024436           89 TGRLMKYDPATKQVTVLL-----------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPG  155 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~-----------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g  155 (268)
                      +++|++++++ ++.....           ..+..|+||+++|++..|||++..+++|.+|+.++++.  ...+..  ...
T Consensus       165 ~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~  241 (329)
T 3fvz_A          165 NSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGR  241 (329)
T ss_dssp             CCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTT
T ss_pred             CCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCC
Confidence            7789999877 5443332           23466999999999668999999999999999983221  122211  111


Q ss_pred             CCC------ceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCE
Q 024436          156 FPD------NIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNV  226 (268)
Q Consensus       156 ~Pd------gia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  226 (268)
                      .|.      |+.++.+|++|++......     +..+. .+|+++..+.....        .... ...+.++++|.+
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~-----v~~~~~~~g~~~~~~~~~~~--------~~~~-p~~ia~~~dG~l  305 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEPVQ-----GFVMNFSSGEIIDVFKPVRK--------HFDM-PHDIVASEDGTV  305 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCCCC-----EEEEETTTCCEEEEECCSSS--------CCSS-EEEEEECTTSEE
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCCcE-----EEEEEcCCCeEEEEEcCCCC--------ccCC-eeEEEECCCCCE
Confidence            233      5555557777777665543     44443 56777776542110        0111 446778888843

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.46  E-value=1.9e-11  Score=108.98  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=97.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------------CCC---CCeeEEEee
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART---------------SPN---RNHISVILS   85 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------------~~~---~~~~~~~~~   85 (268)
                      .++++.-+ +..|++++++|||++|++.. .|+|++++++|+  ..+...               .++   ..+++....
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~-~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTER-PGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEET-TTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeC-CCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            66666654 78999999999999666654 599999987775  333211               111   112222222


Q ss_pred             c-CCc----ceEEEEeCCCC-----eEEEee-----cCCCCcceEEEccCCCEEEEEecC-------------CcEEEEE
Q 024436           86 G-DKT----GRLMKYDPATK-----QVTVLL-----GNLSFPNGVALSEDGNYILLAETT-------------SCRILRY  137 (268)
Q Consensus        86 ~-~~~----g~v~~~d~~~~-----~~~~~~-----~~~~~pnGia~spdg~~lyva~~~-------------~~~I~~~  137 (268)
                      . ...    .+|++++.+++     +.+.+.     ...+.+++|+|+|||+ |||+...             .++|+|+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEE
Confidence            1 112    68888887643     123332     2346789999999995 9999642             3689999


Q ss_pred             EccCCCC-----CceeEEEeCCCCCCceEEcC-CCCEEEEEecCC
Q 024436          138 WLKTSKA-----GTIEIVAQLPGFPDNIKRSP-RGGFWVGIHSRR  176 (268)
Q Consensus       138 ~~~~~~~-----g~~~~~~~l~g~Pdgia~d~-dG~l~va~~~~~  176 (268)
                      +.++...     ...+++..--..|.||++|+ +|+||+++.+.+
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPV  219 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSS
T ss_pred             cCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCC
Confidence            9986311     02355554223699999999 799999998875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.46  E-value=2.7e-13  Score=131.13  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=110.0

Q ss_pred             CCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CC-------CCeeEEEeecCC-cceEEEEeCCCC
Q 024436           33 AIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS---PN-------RNHISVILSGDK-TGRLMKYDPATK  100 (268)
Q Consensus        33 ~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~-------~~~~~~~~~~~~-~g~v~~~d~~~~  100 (268)
                      +..|+|||+++ .|++|+++...++|.+++++|+....+....   |.       ..++  ++++.. .++|+++++++.
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~l--y~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFM--YWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCC--EECCCSSSCCEEBCCSSSC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcE--EEcccCCCCeEEEEeCCCC
Confidence            45799999995 5676777777899999999987544443211   11       1122  223333 378999988733


Q ss_pred             eEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..+.+ ...+..||||+++|++++|||+++..++|++++++|.   .++++...   ...|+||++|.+ +||++.+..+
T Consensus       530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            33333 3568899999999998899999999999999999863   24444432   247999999975 7999998877


Q ss_pred             CcceeeeEeeC-ccceeeeeccccc
Q 024436          177 KGISKLVLSFP-WIGNVLIKLPIDI  200 (268)
Q Consensus       177 ~~~~~~v~~~~-~~g~~l~~i~~~~  200 (268)
                      .     |.++. .+|+.+..|..+.
T Consensus       606 ~-----V~~~d~~~G~~~~~i~~~~  625 (699)
T 1n7d_A          606 A-----IFSANRLTGSDVNLLAENL  625 (699)
T ss_dssp             C-----EEEEETTTEEEEECCCTTC
T ss_pred             e-----EEEEEccCCCceEEeecCC
Confidence            4     66664 5788888776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=3e-12  Score=116.24  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             CCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CC--CCe---------eEEEeecCCcceEEEEe
Q 024436           32 GAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS---PN--RNH---------ISVILSGDKTGRLMKYD   96 (268)
Q Consensus        32 ~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~--~~~---------~~~~~~~~~~g~v~~~d   96 (268)
                      ....|++++++| +|. +|+...+++|+++++++.....++...   ..  .++         -..++.+...++|++++
T Consensus       217 ~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~  295 (409)
T 3hrp_A          217 FSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT  295 (409)
T ss_dssp             SCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             hcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            356899999999 566 555566899999998765444442211   00  001         11233455678899998


Q ss_pred             CCCCeEEEeecC---------------CCCcceEEEccCCCEEEEEec-CCcEEEEEEccCCCCCceeEEEeC-------
Q 024436           97 PATKQVTVLLGN---------------LSFPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQL-------  153 (268)
Q Consensus        97 ~~~~~~~~~~~~---------------~~~pnGia~spdg~~lyva~~-~~~~I~~~~~~~~~~g~~~~~~~l-------  153 (268)
                      ++ +++..+...               +..|+||+++|||+ |||+|+ .+++|++|++.++   ....+...       
T Consensus       296 ~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~  370 (409)
T 3hrp_A          296 PD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQI  370 (409)
T ss_dssp             TT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCC
T ss_pred             cC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcC
Confidence            87 555555432               57899999999997 999999 9999999995432   23333221       


Q ss_pred             --------CCCCCceEEcCCCCEEEEEecCCC
Q 024436          154 --------PGFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       154 --------~g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                              -..|+||++|++|+|||+++.+++
T Consensus       371 ~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          371 DGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             CBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence                    035999999999999999999874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.46  E-value=2.6e-12  Score=117.57  Aligned_cols=143  Identities=13%  Similarity=0.024  Sum_probs=88.2

Q ss_pred             CCCCcceEEECCC---CCEEEEEeCCCeEEEEeCCCCeEEEEEEcC---------CCCC-eeEEEeecCCcceEEEEeCC
Q 024436           32 GAIGPESLAFDAL---GEGPYTGVSDGRIIKWHQDQRRWLHFARTS---------PNRN-HISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        32 ~~~~P~gia~~~d---G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---------~~~~-~~~~~~~~~~~g~v~~~d~~   98 (268)
                      .+..|.+++++|+   |++|+++.. ++|.++++++..+..+....         +++. |+.+.........++.++++
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            5678999999985   887777666 99999998544444443210         1111 11111000011224444433


Q ss_pred             CCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCC-EEEEEec
Q 024436           99 TKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus        99 ~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~-l~va~~~  174 (268)
                      .+.. ......+..|+|++++|++..|||++..+++|++|+.+++..  ...+...  ...+.+|++|++|+ ||+++..
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~--~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL--TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--EEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--EEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            2211 112235788999999994446999999999999999874321  1222222  23466899999998 9999998


Q ss_pred             CCC
Q 024436          175 RRK  177 (268)
Q Consensus       175 ~~~  177 (268)
                      .++
T Consensus       294 ~~~  296 (433)
T 4hw6_A          294 KHC  296 (433)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.46  E-value=1.2e-11  Score=118.24  Aligned_cols=196  Identities=13%  Similarity=0.104  Sum_probs=128.4

Q ss_pred             EEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEc------CCCCC------e--eEEEeecCCcce
Q 024436           27 QYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFART------SPNRN------H--ISVILSGDKTGR   91 (268)
Q Consensus        27 ~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~------~~~~~------~--~~~~~~~~~~g~   91 (268)
                      .+++.++..+.++++++. +.+|+++...++|.|+..+|.....+...      .-..+      +  -..+.++...++
T Consensus       333 ~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~  412 (628)
T 4a0p_A          333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV  412 (628)
T ss_dssp             ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence            445666778999999984 66777788899999999988642222111      00111      1  112345556778


Q ss_pred             EEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEe-CCCCCCceEEcCC-C
Q 024436           92 LMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-G  166 (268)
Q Consensus        92 v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d-G  166 (268)
                      |.+++.++...+.+. ..+..|++|+++|....||++|...+  +|++++++|..   +..+.. .-..|.||++|++ +
T Consensus       413 I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~---~~~l~~~~l~~P~gla~D~~~~  489 (628)
T 4a0p_A          413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE---REVLFFSGLSKPIALALDSRLG  489 (628)
T ss_dssp             EEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTT
T ss_pred             EEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC---cEEEEeccCCCccEEEEeCCCC
Confidence            888888733333443 57889999999996568999999876  89999999742   344433 2247999999986 5


Q ss_pred             CEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE
Q 024436          167 GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE  246 (268)
Q Consensus       167 ~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~  246 (268)
                      +||+++...+.     |.                                  +++.+|....++...   .+..+.+++.
T Consensus       490 ~LYw~D~~~~~-----I~----------------------------------~~~~dG~~r~~~~~~---~~~~P~glav  527 (628)
T 4a0p_A          490 KLFWADSDLRR-----IE----------------------------------SSDLSGANRIVLEDS---NILQPVGLTV  527 (628)
T ss_dssp             EEEEEETTTTE-----EE----------------------------------EEETTSCSCEEEECS---SCSCEEEEEE
T ss_pred             EEEEEeCCCCE-----EE----------------------------------EEeCCCCceEEEEcC---CCCCcEEEEE
Confidence            79999876542     33                                  333333333333321   1344556666


Q ss_pred             eCCEEEEeeCCCCeEEEEeCC
Q 024436          247 KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       247 ~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+++||++++..+.|.+++..
T Consensus       528 ~~~~ly~tD~~~~~i~~~~k~  548 (628)
T 4a0p_A          528 FENWLYWIDKQQQMIEKIDMT  548 (628)
T ss_dssp             ETTEEEEEETTTTEEEEEETT
T ss_pred             ECCEEEEEECCCCeEEEEECc
Confidence            777888888888888777653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.45  E-value=1.9e-10  Score=100.09  Aligned_cols=165  Identities=11%  Similarity=0.082  Sum_probs=108.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCeE-EEEEEc------------------CCCCCeeEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRW-LHFART------------------SPNRNHISVI   83 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~~-~~~~~~------------------~~~~~~~~~~   83 (268)
                      .+..++.+.  .|.+++++|||+.+|+ ...++.|..++.+.... ..+...                  ++++.++...
T Consensus        81 ~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  158 (353)
T 3vgz_A           81 VTQAIHNDL--KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS  158 (353)
T ss_dssp             EEEEEEESS--CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE
T ss_pred             EEEEEecCC--CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE
Confidence            455555554  6999999999995555 45579999999754322 222111                  1222222211


Q ss_pred             eecCCcceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe----CCCCCC
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----LPGFPD  158 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~----l~g~Pd  158 (268)
                       .....+.|+.+|+++++...... ....|++++++|||++||+++. .++|++|+...++.  ...+..    ....|.
T Consensus       159 -~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~  234 (353)
T 3vgz_A          159 -GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKI--LSRKKLLDDGKEHFFI  234 (353)
T ss_dssp             -EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEE--EEEEECCCSSSCCCEE
T ss_pred             -ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeE--EEEEEcCCCCCCcccc
Confidence             11346789999999888766665 4566999999999999999976 68999999875321  112211    123567


Q ss_pred             ceEEcCCCC-EEEEEecCCCcceeeeEee-Cccceeeeecccc
Q 024436          159 NIKRSPRGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIKLPID  199 (268)
Q Consensus       159 gia~d~dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~  199 (268)
                      +++++++|+ +|++....+ .    |..+ ..+++.+..++.+
T Consensus       235 ~~~~s~dg~~l~~~~~~~~-~----v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAA-E----VLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             EEEEETTTTEEEEEESSSS-E----EEEEETTTCCEEEEEECS
T ss_pred             eEEECCCCCEEEEEeCCCC-E----EEEEECCCCcEEEEEEcC
Confidence            899999997 788876654 3    4444 3567777777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=4.8e-11  Score=104.40  Aligned_cols=140  Identities=18%  Similarity=0.209  Sum_probs=89.1

Q ss_pred             CCCcceEEECCCCCEEEEEe-CCCeEEEEeC--CCCe--EEEEE------------------EcCCCCCeeEEEeecCCc
Q 024436           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQ--DQRR--WLHFA------------------RTSPNRNHISVILSGDKT   89 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~--~g~~--~~~~~------------------~~~~~~~~~~~~~~~~~~   89 (268)
                      ...|.+++++|||+.+|+.. .++.|..++.  +|..  +..+.                  ..++++. +  +......
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l--~v~~~~~  161 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-L--AVIDLGS  161 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-E--EEEETTT
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-E--EEEeCCC
Confidence            35799999999999887766 6788877764  3432  11111                  1122222 1  2233445


Q ss_pred             ceEEEEeCC-CCeEEEee----cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE---EeCC------C
Q 024436           90 GRLMKYDPA-TKQVTVLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV---AQLP------G  155 (268)
Q Consensus        90 g~v~~~d~~-~~~~~~~~----~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~---~~l~------g  155 (268)
                      +.|+.++.+ ++++....    .....|++++|+|||++||+++...++|.+|+++... +.....   ...+      .
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCC
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCC
Confidence            566666654 46554321    2334789999999999999999999999999887411 222222   2222      2


Q ss_pred             CCCceEEcCCCC-EEEEEecCC
Q 024436          156 FPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       156 ~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      .|.++++++||+ ||++....+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTT
T ss_pred             cceeEEECCCCCEEEEEeCCCC
Confidence            377799999997 778877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.42  E-value=1.3e-10  Score=103.10  Aligned_cols=216  Identities=10%  Similarity=0.063  Sum_probs=130.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------------CCC---CCeeEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------------SPN---RNHISVIL   84 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------------~~~---~~~~~~~~   84 (268)
                      .++++.-+ +..|+++++.|||++|++....|+|+++++++.....+...                .|+   ..+++.+.
T Consensus        23 ~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           23 VLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            45555544 88999999999999777776689999998753322333221                111   01344333


Q ss_pred             ecCCcceEEEEeCCCC--------eEEEee-----cCCCCcceEEEccCCCEEEEEec-------------CCcEEEEEE
Q 024436           85 SGDKTGRLMKYDPATK--------QVTVLL-----GNLSFPNGVALSEDGNYILLAET-------------TSCRILRYW  138 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~--------~~~~~~-----~~~~~pnGia~spdg~~lyva~~-------------~~~~I~~~~  138 (268)
                      +....++|.|+..+.+        +.+.+.     ...++++.|+|+|||. |||+..             ..++|+|++
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            4345678998876531        223332     2345677899999995 999953             357999999


Q ss_pred             ccCCC-----CCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCC
Q 024436          139 LKTSK-----AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  213 (268)
Q Consensus       139 ~~~~~-----~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~  213 (268)
                      .++..     ....+++..--..|.||++|++|+||+++++...  .+.|..          +..+. .+-+      |.
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~--~deln~----------i~~G~-nyGw------P~  241 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDT--WDELNA----------IKPGD-NYGW------PE  241 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSS--CEEEEE----------ECTTC-BCCT------TT
T ss_pred             CCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCC--CceeeE----------EcCCC-EecC------Cc
Confidence            98641     1123455542235999999999999999987652  122222          21111 1000      00


Q ss_pred             -cEEEEEECCCC--CEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          214 -GGMAMRISEQG--NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       214 -~~~~~~~~~~G--~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                       ++.  . +..+  .++..+. +.   ..++++++..+|.+|++.+.+.+|.+++++
T Consensus       242 ~~g~--~-~~~~~~~P~~~~~-~~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~  291 (347)
T 3das_A          242 AEGK--G-GGSGFHDPVAQWS-TD---EASPSGIAYAEGSVWMAGLRGERLWRIPLK  291 (347)
T ss_dssp             CCSS--C-CCTTCCCCSEEEC-TT---TCCEEEEEEETTEEEEEESTTCSEEEEEEE
T ss_pred             ccCC--C-CCccccCCcEecC-CC---CCCCcceEEEcCceeeccccCCEEEEEEec
Confidence             000  0 0011  1222222 11   135778888899999999999999998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=3.3e-09  Score=93.83  Aligned_cols=227  Identities=10%  Similarity=0.107  Sum_probs=139.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeEE-EEE--------EcCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWL-HFA--------RTSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~~-~~~--------~~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+..+.  .|.+++++|+|+.++ ++..++.|..++....... .+.        ...+++.++.  ......+.|+
T Consensus        24 ~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~--~~~~~~~~v~   99 (391)
T 1l0q_A           24 VTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLS   99 (391)
T ss_dssp             EEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE--EEETTTTEEE
T ss_pred             EEEEeecCC--CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEE--EEECCCCEEE
Confidence            455555553  699999999999764 5557899999997543222 221        1123333332  2344568999


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEE
Q 024436           94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~  172 (268)
                      .+|.++++..........+++++|+|||+.||++....+.|+.|++..++   ..........|..++++++|+ +|++.
T Consensus       100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVSVGRSPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEEecCCCcceEEECCCCCEEEEEe
Confidence            99999888766666666789999999999999999999999999987532   221222334688999999996 56776


Q ss_pred             ecCCCcceeeeEee-CccceeeeeccccceeeeeeccccC----------CCcEEEEEECCC-CCEEEEEEcCCCCceec
Q 024436          173 HSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLS----------GNGGMAMRISEQ-GNVLEILEEIGRKMWRS  240 (268)
Q Consensus       173 ~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-G~~~~~~~~~~g~~~~~  240 (268)
                      ...+ .    |..+ ...++.+..++........++.+..          .. +.+..+|.. ++.+..+....     .
T Consensus       177 ~~~~-~----v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~v~~~d~~~~~~~~~~~~~~-----~  245 (391)
T 1l0q_A          177 FDSM-S----ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYF-NTVSMIDTGTNKITARIPVGP-----D  245 (391)
T ss_dssp             TTTT-E----EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSC-CEEEEEETTTTEEEEEEECCS-----S
T ss_pred             CCCC-E----EEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCC-CcEEEEECCCCeEEEEEecCC-----C
Confidence            5554 2    3333 3445555544432211111111000          11 233444432 44444444321     1


Q ss_pred             eEEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 024436          241 ISEVEE--KDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       241 ~s~~~~--~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +..+..  .+.+||+++..++.|.++++++
T Consensus       246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          246 PAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            334433  2457999999999999998763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.37  E-value=3e-10  Score=98.75  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=93.7

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCc----ceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKT----GRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~----g~v~~~d~~   98 (268)
                      ...|++++++++|++++++..++.|.++++++..+..+...          .+++..   ++.....    +.|+++|++
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l---~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL---FVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE---EEEECTTSSSCCEEEEECTT
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE---EEEeCCCCCCCceEEEEeCC
Confidence            46799999999999888888889999999876544433211          112211   1121222    589999998


Q ss_pred             CCeEEEee---cCCCCcceEEEccCCCEEEEEecC------CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-E
Q 024436           99 TKQVTVLL---GNLSFPNGVALSEDGNYILLAETT------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-F  168 (268)
Q Consensus        99 ~~~~~~~~---~~~~~pnGia~spdg~~lyva~~~------~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l  168 (268)
                      +++.+.+.   .....|++|+++|||+ +|+++..      ...|++++.+++.   ...+......|.+++++++|+ +
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECTTSSEE
T ss_pred             CCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCE---EEEeecCCCcccceEECCCCCEE
Confidence            77766333   2345789999999996 8888764      4789999876532   233322113589999999997 8


Q ss_pred             EEEEecCC
Q 024436          169 WVGIHSRR  176 (268)
Q Consensus       169 ~va~~~~~  176 (268)
                      |++....+
T Consensus       197 ~v~~~~~~  204 (333)
T 2dg1_A          197 WVTETTAN  204 (333)
T ss_dssp             EEEEGGGT
T ss_pred             EEEeCCCC
Confidence            99886554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.35  E-value=1.3e-09  Score=96.49  Aligned_cols=142  Identities=11%  Similarity=0.149  Sum_probs=89.7

Q ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC--CCCeEEEEEEc----------CCCCCeeEEEee------------
Q 024436           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ--DQRRWLHFART----------SPNRNHISVILS------------   85 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~--~g~~~~~~~~~----------~~~~~~~~~~~~------------   85 (268)
                      .++...|.+++++|||+.+|+...+ .|..++.  +|+........          ++++.++..+..            
T Consensus        36 ~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           36 IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            3445579999999999988877665 7777764  45432111111          122332222111            


Q ss_pred             --cCCcceEEEEeCCCCeEEEee-----cCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-CCCCCceeEEE--eC--
Q 024436           86 --GDKTGRLMKYDPATKQVTVLL-----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVA--QL--  153 (268)
Q Consensus        86 --~~~~g~v~~~d~~~~~~~~~~-----~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-~~~~g~~~~~~--~l--  153 (268)
                        ......+|.++.+ +++....     .....|++++|+|||++||+++...++|++|+++ +++   .....  ..  
T Consensus       115 ~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~  190 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE---VELVGSVDAPD  190 (365)
T ss_dssp             SSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---EEEEEEEECSS
T ss_pred             ecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC---EEEeeeEecCC
Confidence              2233455666554 5443222     2456899999999999999999888999999997 432   22221  22  


Q ss_pred             -CCCCCceEEcCCCC-EEEEEecCC
Q 024436          154 -PGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       154 -~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                       ...|.++++++||+ +|++....+
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~~~~  215 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCCCEeEECCCCCEEEEEECCCC
Confidence             23699999999996 677765444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.35  E-value=2e-09  Score=101.04  Aligned_cols=232  Identities=9%  Similarity=-0.008  Sum_probs=142.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC--C-CCeEEEEE--------EcCC----CCCeeEEEeecCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ--D-QRRWLHFA--------RTSP----NRNHISVILSGDK   88 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~--~-g~~~~~~~--------~~~~----~~~~~~~~~~~~~   88 (268)
                      .+.+++.+.  .|++++++|||+.+|+...++.|..|+.  . ++....+.        ..++    ++.++....  ..
T Consensus       171 ~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~--~~  246 (543)
T 1nir_A          171 IVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA--YW  246 (543)
T ss_dssp             EEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE--EE
T ss_pred             EEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEE--cc
Confidence            566666664  4999999999999999998999999998  3 22222111        1245    555543322  23


Q ss_pred             cceEEEEeCCCCeEEEeecC------------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC
Q 024436           89 TGRLMKYDPATKQVTVLLGN------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF  156 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~------------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~  156 (268)
                      .+.|..+|.++++.......            -..+.+|+++||++.+|++....++|+.++......-....+ .....
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~  325 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPF  325 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSS
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcC
Confidence            46788889887766443321            125678999999999999999999999999875332111122 23347


Q ss_pred             CCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccceee----eeec----------cccCCCcEEEEEE
Q 024436          157 PDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVKI----HSSL----------VKLSGNGGMAMRI  220 (268)
Q Consensus       157 Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~~----~~~~----------~~~~~~~~~~~~~  220 (268)
                      |.+++++++|+ +|++....+.     |.. ...+++++..++.+..+.    ..+.          +........++-.
T Consensus       326 ~~~~~~spdg~~l~va~~~~~~-----v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          326 LHDGGWDSSHRYFMTAANNSNK-----VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CCCEEECTTSCEEEEEEGGGTE-----EEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             ccCceECCCCCEEEEEecCCCe-----EEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEe
Confidence            99999999998 6777765553     333 356788887776532110    0111          0001111222223


Q ss_pred             CCC------CCEEEEEEcCCCCceeceEEEE-EeCCEEEEeeCC------CCeEEEEeCCC
Q 024436          221 SEQ------GNVLEILEEIGRKMWRSISEVE-EKDGNLWIGSVN------MPYAGLYNYSS  268 (268)
Q Consensus       221 ~~~------G~~~~~~~~~~g~~~~~~s~~~-~~~g~Lyv~s~~------~~~v~~~~~~~  268 (268)
                      ++.      ++++..+..+.+..   ..... +.+.+||+++..      ++.|.++|+++
T Consensus       401 ~~~~~~~~~~~~v~~l~~~g~~~---~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQGQGGGS---LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  458 (543)
T ss_dssp             CTTTCTTTBTSEEEEEECSCSCC---CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCCchhcCeEEEEEEcCCCCc---eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence            321      56666666543221   11222 345789999853      44999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.34  E-value=3.2e-10  Score=99.11  Aligned_cols=141  Identities=15%  Similarity=0.133  Sum_probs=86.3

Q ss_pred             CCCcceEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEE---c---------CCCCCeeEEEeecCCcceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVS--DGRIIKWHQDQRRWLHFAR---T---------SPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~--~g~I~~~~~~g~~~~~~~~---~---------~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ...|.+++++|||++++++..  ++.|..++.++........   .         ++++.++..  .....+.+..++.+
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~--~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYS--ANYHKGTAEVMKIA  116 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEE--EETTTTEEEEEEEC
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEE--EeCCCCEEEEEEeC
Confidence            458999999999995445442  6889888875433222211   1         233333332  22234555555442


Q ss_pred             -CCeEEEee---c---------CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-CCCCCceeEEEeCC-CCCCceEEc
Q 024436           99 -TKQVTVLL---G---------NLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLP-GFPDNIKRS  163 (268)
Q Consensus        99 -~~~~~~~~---~---------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-~~~~g~~~~~~~l~-g~Pdgia~d  163 (268)
                       +++.+.+.   .         ....|++++++|||+ +|+++...++|++|+++ ++.+.....+...+ ..|.+++++
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence             24444332   1         123477899999999 99999999999999997 32221111111112 268899999


Q ss_pred             CCCC-EEEEEecCC
Q 024436          164 PRGG-FWVGIHSRR  176 (268)
Q Consensus       164 ~dG~-l~va~~~~~  176 (268)
                      +||+ +|++....+
T Consensus       196 pdg~~l~v~~~~~~  209 (347)
T 3hfq_A          196 PDGQYAFLAGELSS  209 (347)
T ss_dssp             TTSSEEEEEETTTT
T ss_pred             CCCCEEEEEeCCCC
Confidence            9998 788776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.32  E-value=5e-10  Score=109.50  Aligned_cols=90  Identities=12%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             EeecCCcceEEEEeCCCC----eEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCC
Q 024436           83 ILSGDKTGRLMKYDPATK----QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGF  156 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~----~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~  156 (268)
                      ++.+...++|++++.++.    ..+.+. .++..|+|||+++.++.||++|+..++|.+++++|..   .+++.. .-..
T Consensus       439 Y~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---~~~l~~~~l~~  515 (791)
T 3m0c_C          439 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSK  515 (791)
T ss_dssp             EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCC
T ss_pred             EEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---EEEEEeCCCCC
Confidence            345556678888888732    233344 4889999999999998999999999999999998742   444443 2236


Q ss_pred             CCceEEcCC-CCEEEEEecC
Q 024436          157 PDNIKRSPR-GGFWVGIHSR  175 (268)
Q Consensus       157 Pdgia~d~d-G~l~va~~~~  175 (268)
                      |.||++|+. |+||+++++.
T Consensus       516 P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSS
T ss_pred             cceEEEecCCCCEEEecCCC
Confidence            999999986 7899999876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.28  E-value=1.8e-09  Score=93.44  Aligned_cols=154  Identities=12%  Similarity=0.068  Sum_probs=99.7

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC-----------CCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-----------PNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      +.|+++.++++++++...+++|..++.+...........           +++.++  +......+.|+.+|.++++...
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~--~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA--YVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE--EEEETTTTEEEEEETTTTEEEE
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE--EEEeCCCCcEEEEeCCCCcEEE
Confidence            457788999998888889999999998654332222211           122222  2233566899999998887654


Q ss_pred             eecC-------CCCcceEEEccCCCEEEEEecC-----------CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436          105 LLGN-------LSFPNGVALSEDGNYILLAETT-----------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus       105 ~~~~-------~~~pnGia~spdg~~lyva~~~-----------~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG  166 (268)
                      ....       ...|++++++|||++||++...           .++|++|+++++...........+..+.++++++||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            4332       2338999999999999999854           579999998753222111122234468889999999


Q ss_pred             CEEEEEecCCCcceeeeEee-Cccceeeeecccc
Q 024436          167 GFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPID  199 (268)
Q Consensus       167 ~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~  199 (268)
                      ++|++  ..  .    |..+ ..+++.+..++..
T Consensus       160 ~l~~~--~~--~----i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          160 SLYVA--GP--D----IYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             CEEEE--SS--S----EEEECTTTCCEEEEECST
T ss_pred             cEEEc--cC--c----EEEEeCCCCceecccccc
Confidence            98874  22  2    3333 3567776666543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.28  E-value=5.5e-10  Score=95.84  Aligned_cols=141  Identities=15%  Similarity=0.175  Sum_probs=93.9

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEE-------EeCCCeEEEEeCCCCeEEEEEE-----c---------CCC-CCeeEE
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYT-------GVSDGRIIKWHQDQRRWLHFAR-----T---------SPN-RNHISV   82 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~-------~~~~g~I~~~~~~g~~~~~~~~-----~---------~~~-~~~~~~   82 (268)
                      .+.+ ..++..|++++++++|+++++       +..+++|.+++++...+..+..     .         .++ +.   .
T Consensus        10 ~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~---l   85 (314)
T 1pjx_A           10 FTKV-TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ---L   85 (314)
T ss_dssp             CEEE-ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE---E
T ss_pred             Hhhh-hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc---E
Confidence            3444 344789999999999998877       5678999999964332333321     0         111 11   1


Q ss_pred             EeecCCcceEEEEeCCCCeEEEe-ec-----CCCCcceEEEccCCCEEEEEecCC---------------cEEEEEEccC
Q 024436           83 ILSGDKTGRLMKYDPATKQVTVL-LG-----NLSFPNGVALSEDGNYILLAETTS---------------CRILRYWLKT  141 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~~~~~~-~~-----~~~~pnGia~spdg~~lyva~~~~---------------~~I~~~~~~~  141 (268)
                      ++... ...|+++|++ ++.+.+ ..     ....|++|++++||+ +|+++...               +.|++++.++
T Consensus        86 ~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  162 (314)
T 1pjx_A           86 FVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             EEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             EEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCCC
Confidence            11211 2378899998 877665 32     234689999999996 89998764               6899998763


Q ss_pred             CCCCceeEEEeCCCCCCceEEc----CCC-CEEEEEecCC
Q 024436          142 SKAGTIEIVAQLPGFPDNIKRS----PRG-GFWVGIHSRR  176 (268)
Q Consensus       142 ~~~g~~~~~~~l~g~Pdgia~d----~dG-~l~va~~~~~  176 (268)
                          ....+......|.+++++    ++| .+|++....+
T Consensus       163 ----~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~  198 (314)
T 1pjx_A          163 ----QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             ----CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             ----CEEEeccCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence                233332212368999999    999 5899987655

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=6.9e-10  Score=95.96  Aligned_cols=141  Identities=17%  Similarity=0.278  Sum_probs=99.6

Q ss_pred             CCEEEEecCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEEcC---------CCCCeeEEEeecCCcceE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTS---------PNRNHISVILSGDKTGRL   92 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~g~v   92 (268)
                      ..++.+.-+ ...+||++++++|+ +++++..+++|++++++|+ ...+....         +++.   .+......++|
T Consensus        35 ~~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~---l~v~~~~~~~v  109 (305)
T 3dr2_A           35 ARLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQR---LVHCEHGRRAI  109 (305)
T ss_dssp             CCCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSC---EEEEETTTTEE
T ss_pred             CceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCC---EEEEECCCCEE
Confidence            467777766 56799999999998 7788888999999999876 34433221         1111   11222345689


Q ss_pred             EEEeCCCCeEEEeec-----CCCCcceEEEccCCCEEEEEec-----------------CCcEEEEEEccCCCCCceeEE
Q 024436           93 MKYDPATKQVTVLLG-----NLSFPNGVALSEDGNYILLAET-----------------TSCRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~-----~~~~pnGia~spdg~~lyva~~-----------------~~~~I~~~~~~~~~~g~~~~~  150 (268)
                      ++++++ ++.+.+..     .+..||+++++|||+ +|++|.                 ..+.|++++.++++.   ..+
T Consensus       110 ~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~---~~~  184 (305)
T 3dr2_A          110 TRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL---QRM  184 (305)
T ss_dssp             EEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---EEE
T ss_pred             EEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---EEE
Confidence            999987 77766643     245799999999996 999863                 146899998864332   222


Q ss_pred             EeCCCCCCceEEcCCCC-EEEEEec
Q 024436          151 AQLPGFPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       151 ~~l~g~Pdgia~d~dG~-l~va~~~  174 (268)
                      ..+ ..|.|+++++||+ ||++...
T Consensus       185 ~~~-~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          185 ADL-DHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             EEE-SSEEEEEECTTSSEEEEEECC
T ss_pred             ecC-CCCcceEEcCCCCEEEEEecC
Confidence            233 3699999999997 8998875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.25  E-value=2.5e-10  Score=101.60  Aligned_cols=122  Identities=20%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .++++.-+ +..|.+++++|||+ +|++.. .|+|++++++|.....+              ...+              
T Consensus         9 ~~~~va~~-l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~--------------~~~~--------------   58 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPL--------------SGVP--------------   58 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCC--------------BSCC--------------
T ss_pred             EEEEEECC-CCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEe--------------cCCc--------------
Confidence            55666653 77899999999999 777764 69999998776420000              0000              


Q ss_pred             EEeecCCCCcceEEEccC---CCEEEEEecC-------CcEEEEEEccCC--CCCceeEEE-eCC------CCCCceEEc
Q 024436          103 TVLLGNLSFPNGVALSED---GNYILLAETT-------SCRILRYWLKTS--KAGTIEIVA-QLP------GFPDNIKRS  163 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spd---g~~lyva~~~-------~~~I~~~~~~~~--~~g~~~~~~-~l~------g~Pdgia~d  163 (268)
                      +....+...++||+++||   +++|||+++.       ..+|.+|++++.  .+...+++. .+|      ..|.+|+++
T Consensus        59 ~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~  138 (353)
T 2g8s_A           59 DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD  138 (353)
T ss_dssp             CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC
T ss_pred             ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC
Confidence            112233456799999997   6689999875       468999998742  233334433 343      137899999


Q ss_pred             CCCCEEEEEecC
Q 024436          164 PRGGFWVGIHSR  175 (268)
Q Consensus       164 ~dG~l~va~~~~  175 (268)
                      +||+||++....
T Consensus       139 pdG~Lyv~~Gd~  150 (353)
T 2g8s_A          139 GKGYLFIALGEN  150 (353)
T ss_dssp             SSSEEEEEECCT
T ss_pred             CCCcEEEEECCC
Confidence            999999998653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.24  E-value=9.5e-09  Score=88.54  Aligned_cols=148  Identities=11%  Similarity=0.060  Sum_probs=93.4

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCC-CeEEEEeCC--CCeEEEEEE-----------cCCCCCeeEEEeecCCcc
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD-GRIIKWHQD--QRRWLHFAR-----------TSPNRNHISVILSGDKTG   90 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~-g~I~~~~~~--g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g   90 (268)
                      +..+..+  ..|.+++++|+|+.+++...+ +.|..++.+  +..+.....           .++++.++.  ......+
T Consensus        31 ~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~--~~~~~~~  106 (343)
T 1ri6_A           31 TQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVF--VGSYNAG  106 (343)
T ss_dssp             EEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEE--EEETTTT
T ss_pred             eeeEecC--CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEE--EEecCCC
Confidence            3444443  379999999999977776665 888887654  322222211           122233332  2333456


Q ss_pred             eEEEEeCCCC---eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCcee--EEEe-CCCCCCceEEc
Q 024436           91 RLMKYDPATK---QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIE--IVAQ-LPGFPDNIKRS  163 (268)
Q Consensus        91 ~v~~~d~~~~---~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~~--~~~~-l~g~Pdgia~d  163 (268)
                      .|..+|.+++   +..........|++++|+|||++||+++...++|++|+++. +......  .+.. ....|.+++++
T Consensus       107 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
T 1ri6_A          107 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  186 (343)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence            6777766222   33334455667999999999999999998889999999974 3221111  1111 12368899999


Q ss_pred             CCCC-EEEEEecCC
Q 024436          164 PRGG-FWVGIHSRR  176 (268)
Q Consensus       164 ~dG~-l~va~~~~~  176 (268)
                      ++|+ +|++....+
T Consensus       187 pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          187 PNEQYAYCVNELNS  200 (343)
T ss_dssp             TTSSEEEEEETTTT
T ss_pred             CCCCEEEEEeCCCC
Confidence            9998 777765544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.23  E-value=1e-08  Score=88.58  Aligned_cols=148  Identities=18%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             EEEEecCCCCCcce-EEECCCCCEEEEEeCC-C--eEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCc-c
Q 024436           25 VVQYQIEGAIGPES-LAFDALGEGPYTGVSD-G--RIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKT-G   90 (268)
Q Consensus        25 ~~~i~~~~~~~P~g-ia~~~dG~~l~~~~~~-g--~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~-g   90 (268)
                      ...+..+.  .|.. ++++|||+.+++...+ +  .|..++.+........         ..++++.++......... -
T Consensus        76 ~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           76 VVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             EEecccCC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceE
Confidence            44444443  6888 9999999988865555 3  8999998654322221         123444444333232233 4


Q ss_pred             eEEEEeCCCCeE----EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEeCCCCCCceEEcCC
Q 024436           91 RLMKYDPATKQV----TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        91 ~v~~~d~~~~~~----~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~l~g~Pdgia~d~d  165 (268)
                      .+|.++.+ +.+    .........|++++|+|||++||+++...++|.+|+++.+.... ...+ .....|.++++++|
T Consensus       154 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spd  231 (331)
T 3u4y_A          154 RRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRD  231 (331)
T ss_dssp             EEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTT
T ss_pred             EEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCC
Confidence            56666654 433    22234456799999999999999999999999999997543211 1222 23457999999999


Q ss_pred             CC-EEEEEecCC
Q 024436          166 GG-FWVGIHSRR  176 (268)
Q Consensus       166 G~-l~va~~~~~  176 (268)
                      |+ +|++....+
T Consensus       232 g~~l~v~~~~~~  243 (331)
T 3u4y_A          232 GSTVYVLTESTV  243 (331)
T ss_dssp             SSEEEEECSSEE
T ss_pred             CCEEEEEEcCCC
Confidence            98 777765443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.22  E-value=6.6e-09  Score=89.12  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCC-cceE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDK-TGRL   92 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~-~g~v   92 (268)
                      -+..++.+....+++++++|+|++++  ..+++|..++++|+.+-.+...          .++++++   +.... ++++
T Consensus        27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~l---v~~~~~~~~v  101 (276)
T 3no2_A           27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNAL---VAWCGHPSTI  101 (276)
T ss_dssp             EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEE---EEEESTTEEE
T ss_pred             EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEE---EEecCCCCEE
Confidence            34444544324699999999999777  3578899999988743333211          1222222   12223 6899


Q ss_pred             EEEeCCCCeE-EEee--c----CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcC
Q 024436           93 MKYDPATKQV-TVLL--G----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSP  164 (268)
Q Consensus        93 ~~~d~~~~~~-~~~~--~----~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~  164 (268)
                      +.+|++ |+. ....  .    ....|+++++++||+ +++++..+++|..|+.+|.     ..+. ..++.|.++.+.+
T Consensus       102 ~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~-----~~w~~~~~~~~~~~~~~~  174 (276)
T 3no2_A          102 LEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPNGQ-----LLNSVKLSGTPFSSAFLD  174 (276)
T ss_dssp             EEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTTSC-----EEEEEECSSCCCEEEECT
T ss_pred             EEEeCC-CCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCCCC-----EEEEEECCCCccceeEcC
Confidence            999997 543 3321  1    123578899999997 6678889999999998742     2221 2445789999999


Q ss_pred             CCCEEEEEecCCCcceeeeEeeCcc-ceeeeecc
Q 024436          165 RGGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLP  197 (268)
Q Consensus       165 dG~l~va~~~~~~~~~~~v~~~~~~-g~~l~~i~  197 (268)
                      +|+++++...+++     |..+.+. |+++.++.
T Consensus       175 ~g~~~v~~~~~~~-----v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          175 NGDCLVACGDAHC-----FVQLNLESNRIVRRVN  203 (276)
T ss_dssp             TSCEEEECBTTSE-----EEEECTTTCCEEEEEE
T ss_pred             CCCEEEEeCCCCe-----EEEEeCcCCcEEEEec
Confidence            9999998876652     4444433 66655553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=6.7e-09  Score=91.22  Aligned_cols=137  Identities=17%  Similarity=0.200  Sum_probs=83.9

Q ss_pred             CCcceEEECCCCCEEEEEe-CCCeEEEEeCC--CCe--E-EEE-------------------EEcCCCCCeeEEEeecCC
Q 024436           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQD--QRR--W-LHF-------------------ARTSPNRNHISVILSGDK   88 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~--g~~--~-~~~-------------------~~~~~~~~~~~~~~~~~~   88 (268)
                      ..|.++++  +|+.+++.. .++.|..++.+  +..  . ...                   ...++++.++..  ....
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~--~~~~  175 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA--DDLG  175 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE--EETT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE--EeCC
Confidence            47899998  788777655 57888887653  321  0 000                   122334443332  2333


Q ss_pred             cce--EEEEeCCCC----e-E-------EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC
Q 024436           89 TGR--LMKYDPATK----Q-V-------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP  154 (268)
Q Consensus        89 ~g~--v~~~d~~~~----~-~-------~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~  154 (268)
                      .+.  +|.++..++    + +       .........|++++|+|||++||+++...++|.+|+++++.+.....+...+
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            444  455565543    2 2       2223445678999999999999999988899999999753221112222222


Q ss_pred             ---CCCCceEEcCCCC-EEEEEec
Q 024436          155 ---GFPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       155 ---g~Pdgia~d~dG~-l~va~~~  174 (268)
                         ..|.++++++||+ ||++...
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECS
T ss_pred             CCCCCcccEEECCCCCEEEEECCC
Confidence               2367999999998 6777766

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.22  E-value=7.1e-09  Score=90.67  Aligned_cols=214  Identities=16%  Similarity=0.113  Sum_probs=128.3

Q ss_pred             EEEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEc--------CCCCCeeEEEeecCCcceEEEE
Q 024436           25 VVQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFART--------SPNRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~g~v~~~   95 (268)
                      ++.+.-....-+||++++|+ +.+++++..+++|+++++++.....+...        .+++.+   ++..  ...|+++
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l---~v~~--~~gl~~~  114 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQ---LIAS--DDGLFLR  114 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEE---EEEE--TTEEEEE
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeE---EEEE--CCCEEEE
Confidence            55555545567999999997 66777787889999999877543333210        111111   1111  2359999


Q ss_pred             eCCCCeEEEeecC-----CCCcceEEEccCCCEEEEEecC------CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           96 DPATKQVTVLLGN-----LSFPNGVALSEDGNYILLAETT------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        96 d~~~~~~~~~~~~-----~~~pnGia~spdg~~lyva~~~------~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      |+++++++.+...     ...+|+++++|||+ +|+++..      .+.|++++ ++    ....+......|.++++++
T Consensus       115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~g----~~~~~~~~~~~~~~i~~s~  188 (326)
T 2ghs_A          115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-KG----KVTKLFADISIPNSICFSP  188 (326)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-TT----EEEEEEEEESSEEEEEECT
T ss_pred             ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-CC----cEEEeeCCCcccCCeEEcC
Confidence            9988887766432     23589999999997 8888753      46899998 43    2333322113689999999


Q ss_pred             CCC-EEEEEecCCCcceeeeEeeCc---cc-e-----eeeeccccceeeee-ec-------cccCCCcEEEEEECCCCCE
Q 024436          165 RGG-FWVGIHSRRKGISKLVLSFPW---IG-N-----VLIKLPIDIVKIHS-SL-------VKLSGNGGMAMRISEQGNV  226 (268)
Q Consensus       165 dG~-l~va~~~~~~~~~~~v~~~~~---~g-~-----~l~~i~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~G~~  226 (268)
                      ||+ +|++....+ .    |.+++.   +| +     .+..+......+.. ++       -..... +.+.+++++|+.
T Consensus       189 dg~~lyv~~~~~~-~----I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-~~v~~~d~~g~~  262 (326)
T 2ghs_A          189 DGTTGYFVDTKVN-R----LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-GAVDRYDTDGNH  262 (326)
T ss_dssp             TSCEEEEEETTTC-E----EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-TEEEEECTTCCE
T ss_pred             CCCEEEEEECCCC-E----EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-CEEEEECCCCCE
Confidence            996 888876554 3    444432   34 2     22222110000110 11       011111 347788888888


Q ss_pred             EEEEEcCCCCceeceEEEEEe---CCEEEEeeCCCC
Q 024436          227 LEILEEIGRKMWRSISEVEEK---DGNLWIGSVNMP  259 (268)
Q Consensus       227 ~~~~~~~~g~~~~~~s~~~~~---~g~Lyv~s~~~~  259 (268)
                      +..+..+.    ..++.+...   +++||+++....
T Consensus       263 ~~~i~~~~----~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          263 IARYEVPG----KQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEEECSC----SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEEECCC----CCcEEEEEecCCCCEEEEEecCCC
Confidence            87776543    234555543   368999987764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=7.3e-10  Score=102.53  Aligned_cols=154  Identities=14%  Similarity=0.023  Sum_probs=101.7

Q ss_pred             CCCcceEEE-------CCCCCEE-EEEeCC------CeEEEEeCC--CCeE-----EEEEE-cCCC-------CCeeEEE
Q 024436           33 AIGPESLAF-------DALGEGP-YTGVSD------GRIIKWHQD--QRRW-----LHFAR-TSPN-------RNHISVI   83 (268)
Q Consensus        33 ~~~P~gia~-------~~dG~~l-~~~~~~------g~I~~~~~~--g~~~-----~~~~~-~~~~-------~~~~~~~   83 (268)
                      +..|.+|++       +++|+.+ +++..+      ..|+.++.+  |...     ..++. ..+.       ..++  +
T Consensus       185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~L--Y  262 (496)
T 3kya_A          185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGEL--Y  262 (496)
T ss_dssp             CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCE--E
T ss_pred             cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeE--E
Confidence            456999999       9999944 444444      247777543  3321     12221 1111       1122  3


Q ss_pred             eecCCcceEEEEeCC-------CCeE------------EEe--ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           84 LSGDKTGRLMKYDPA-------TKQV------------TVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~-------~~~~------------~~~--~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      +.....++|+++|++       ++++            +.+  ......|.+|+++|+|+.|||+|+.+++|++++.++.
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence            345677899999987       5654            122  2234678999999999999999999999999988753


Q ss_pred             C--CCceeEEEeC---C------------CCCC-ceEEc-------CCCCEEEEEecCCCcceeeeEeeCccceee
Q 024436          143 K--AGTIEIVAQL---P------------GFPD-NIKRS-------PRGGFWVGIHSRRKGISKLVLSFPWIGNVL  193 (268)
Q Consensus       143 ~--~g~~~~~~~l---~------------g~Pd-gia~d-------~dG~l~va~~~~~~~~~~~v~~~~~~g~~l  193 (268)
                      .  +.....++..   .            ..|. |+++|       ++|+||||++.+++     |+++.++|.+.
T Consensus       343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r-----Ir~i~~~G~v~  413 (496)
T 3kya_A          343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC-----VRKVTPEGIVS  413 (496)
T ss_dssp             TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE-----EEEECTTCBEE
T ss_pred             cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE-----EEEEeCCCCEE
Confidence            1  1112334321   1            2588 88998       78999999999985     88888888653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.17  E-value=1.4e-09  Score=100.12  Aligned_cols=125  Identities=15%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .++++.-+ +..|.+++++|||++|++....++|++++++ |. ...+..                      +. + .  
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-~~~~~~----------------------~~-~-~--   69 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGS-VKTVFQ----------------------VP-E-I--   69 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEE----------------------CT-T-C--
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-EeEEec----------------------CC-c-c--
Confidence            66777654 7899999999999988776655689988764 43 222210                      00 0 0  


Q ss_pred             EEeecCCCCcceEEEccC---CCEEEEEecC------------CcEEEEEEccCC--CCCceeEEEe-CC----CCCCce
Q 024436          103 TVLLGNLSFPNGVALSED---GNYILLAETT------------SCRILRYWLKTS--KAGTIEIVAQ-LP----GFPDNI  160 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spd---g~~lyva~~~------------~~~I~~~~~~~~--~~g~~~~~~~-l~----g~Pdgi  160 (268)
                      .....+...+.||+|+||   ++.|||+.+.            ..+|++|+.++.  .+...+++.+ ++    ..+.+|
T Consensus        70 ~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l  149 (454)
T 1cru_A           70 VNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRL  149 (454)
T ss_dssp             CCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEE
T ss_pred             ccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeE
Confidence            000012344679999996   6689999874            469999998642  2333344433 43    248899


Q ss_pred             EEcCCCCEEEEEecCC
Q 024436          161 KRSPRGGFWVGIHSRR  176 (268)
Q Consensus       161 a~d~dG~l~va~~~~~  176 (268)
                      ++++||+||++.....
T Consensus       150 ~f~pDG~Lyv~~Gd~~  165 (454)
T 1cru_A          150 VIGPDQKIYYTIGDQG  165 (454)
T ss_dssp             EECTTSCEEEEECCTT
T ss_pred             eECCCCeEEEEECCCC
Confidence            9999999999987653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=4.2e-09  Score=89.41  Aligned_cols=133  Identities=8%  Similarity=-0.005  Sum_probs=81.8

Q ss_pred             ceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436           90 GRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      .+|.++|++++++..-..  .-.+..||++.  ++.||++...++++++||.+..+  ....+. .++.+.|++.|. +.
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~-~~~eG~glt~dg-~~  138 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--QVRSFN-YDGEGWGLTHND-QY  138 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC--EEEEEE-CSSCCCCEEECS-SC
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc--EEEEEE-CCCCceEEecCC-CE
Confidence            356666666666543332  22345566664  56899999999999999987421  122222 344556777653 46


Q ss_pred             EEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEc-CCCCceeceEEEE
Q 024436          168 FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSISEVE  245 (268)
Q Consensus       168 l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~-~~g~~~~~~s~~~  245 (268)
                      ||+++. .+ +                                      +..+|+. .+++..+.- .+|+.+..+..+.
T Consensus       139 L~~SdG-s~-~--------------------------------------i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          139 LIMSDG-TP-V--------------------------------------LRFLDPESLTPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             EEECCS-SS-E--------------------------------------EEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECC-CC-e--------------------------------------EEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence            888763 22 1                                      3344443 344433321 1345555555555


Q ss_pred             EeCCEEEEeeCCCCeEEEEeCCC
Q 024436          246 EKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       246 ~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      ..+|+||++.+..+.|++||.++
T Consensus       179 ~~~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          179 WVDGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             EETTEEEEEETTSSEEEEECTTT
T ss_pred             EECCEEEEEEccCCeEEEEECCC
Confidence            66899999999999999999865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.17  E-value=4.7e-09  Score=89.21  Aligned_cols=203  Identities=10%  Similarity=0.016  Sum_probs=118.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcCCC---------CCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSPN---------RNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~~~---------~~~~~~~~~~~~~g~v~   93 (268)
                      =+++++.+.-..-.|+.++ ++.+|.+.-.+|+|.+++++. +.....  ..+.         +..++.  .....+.++
T Consensus        45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~--ltw~~~~v~  119 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQ--LTWTEGLLF  119 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEE--EESSSCEEE
T ss_pred             EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEE--EEccCCEEE
Confidence            3567777763344799998 355444444568998888754 322222  2111         111111  223568999


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE--EeCC---CCCCceEEcCCCCE
Q 024436           94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV--AQLP---GFPDNIKRSPRGGF  168 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~--~~l~---g~Pdgia~d~dG~l  168 (268)
                      +||+++.++..-...  .+.|..+++||+.||+++ .+++|+.+|+++.+.  ...+  ..-+   ..++.+.+. +|.|
T Consensus       120 V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          120 TWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECA-NGVI  193 (268)
T ss_dssp             EEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEe-CCEE
Confidence            999998876554433  245666678899999999 589999999875321  1111  1111   134567766 7899


Q ss_pred             EEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEe-
Q 024436          169 WVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-  247 (268)
Q Consensus       169 ~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~-  247 (268)
                      |++.|..+. +   ....+.+|+++..|.+..     +.+.. +.         +       ..+.+   ....+++.+ 
T Consensus       194 yanvw~s~~-I---~vIDp~TG~V~~~Idl~~-----L~~~~-~~---------~-------~~~~~---~vlNGIA~dp  244 (268)
T 3nok_A          194 YANIWHSSD-V---LEIDPATGTVVGVIDASA-----LTRAV-AG---------Q-------VTNPE---AVLNGIAVEP  244 (268)
T ss_dssp             EEEETTCSE-E---EEECTTTCBEEEEEECHH-----HHHHH-TT---------T-------CCCTT---CCEEEEEECT
T ss_pred             EEEECCCCe-E---EEEeCCCCcEEEEEECCC-----Ccccc-cc---------c-------ccCcC---CceEEEEEcC
Confidence            999987763 1   223456777777776541     00000 00         0       00011   223455543 


Q ss_pred             -CCEEEEeeCCCCeEEEEeC
Q 024436          248 -DGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       248 -~g~Lyv~s~~~~~v~~~~~  266 (268)
                       +++|||++-..+++-.|++
T Consensus       245 ~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          245 GSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             TTCCEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEeCCCCCceEEEEE
Confidence             4689999988888887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=2.2e-09  Score=94.50  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=87.4

Q ss_pred             CCcceEEECCCCCEEEEEe--CCC--eEEEEeCCCCeEEEEEEc----------------CC-CCCeeEEEee-cCCcce
Q 024436           34 IGPESLAFDALGEGPYTGV--SDG--RIIKWHQDQRRWLHFART----------------SP-NRNHISVILS-GDKTGR   91 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~--~~g--~I~~~~~~g~~~~~~~~~----------------~~-~~~~~~~~~~-~~~~g~   91 (268)
                      ..|++++++++|+++++..  .++  +|+.++ +|+ +..+...                .+ ++-|+.+... ..+..+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            5899999999999777643  234  888888 654 2322110                00 1112222100 011468


Q ss_pred             EEEEeCCCCeEEEeec-------CCCCcceEEEccCCCEEEEEec---CCcEEEEEEccCCCCCc------------e--
Q 024436           92 LMKYDPATKQVTVLLG-------NLSFPNGVALSEDGNYILLAET---TSCRILRYWLKTSKAGT------------I--  147 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~-------~~~~pnGia~spdg~~lyva~~---~~~~I~~~~~~~~~~g~------------~--  147 (268)
                      |+++|++++++.....       ...+||+|+++++++.+|+++.   ..+.|++|++++++...            .  
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999998887433221       1247899999988778999998   78899999987432100            0  


Q ss_pred             ----eEEE--e-------CCCCCCceEEcCCCC-EEEEEecCC
Q 024436          148 ----EIVA--Q-------LPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       148 ----~~~~--~-------l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                          ..+.  .       ....|+||++++||+ ||++....+
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence                0000  0       012478999999996 888887665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.16  E-value=4.7e-08  Score=85.76  Aligned_cols=143  Identities=13%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             CCCCcceEEECCCCCEEEEEeCC----CeEE--EEeCCCCeEEEEEEc--CC--------CCCeeEEEeecCCcceEEEE
Q 024436           32 GAIGPESLAFDALGEGPYTGVSD----GRII--KWHQDQRRWLHFART--SP--------NRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~----g~I~--~~~~~g~~~~~~~~~--~~--------~~~~~~~~~~~~~~g~v~~~   95 (268)
                      ....|.+++++|||+.+|+...+    +.|.  .++.++..+......  ..        ++.++  +......+.+..+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l--~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNI--VTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEE--EEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEE--EEEECCCCEEEEE
Confidence            34589999999999988887654    6774  456652222322211  11        11122  2233345566666


Q ss_pred             eCCC-CeEEEee-----c---------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC-------CCce---eEE
Q 024436           96 DPAT-KQVTVLL-----G---------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-------AGTI---EIV  150 (268)
Q Consensus        96 d~~~-~~~~~~~-----~---------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~-------~g~~---~~~  150 (268)
                      +.++ +.+..+.     .         ....|++++|+|||++||+++...++|++|+++...       +...   ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            5432 3322110     1         123457899999999999999989999999987422       1100   111


Q ss_pred             Ee-CCCCCCceEEcCCCC-EEEEEecCC
Q 024436          151 AQ-LPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       151 ~~-l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      .. ....|.++++++||+ +|++....+
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            11 224689999999997 777775554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.16  E-value=1.3e-08  Score=85.70  Aligned_cols=131  Identities=13%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             ceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCC
Q 024436           90 GRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPR  165 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~d  165 (268)
                      .+|.++|++++++..-..  .-.++.||++.  +++||+....++++++||.+.     .+...+  .++.+.|++.| .
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~t-----l~~~~ti~~~~~Gwglt~d-g  114 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLAT-----LTPRARFRYPGEGWALTSD-D  114 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTT-----TEEEEEEECSSCCCEEEEC-S
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCc-----CcEEEEEeCCCCceEEeeC-C
Confidence            466777777776654432  23445566664  568999999999999999874     233333  34556777765 3


Q ss_pred             CCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEc-CCCCceeceEE
Q 024436          166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSISE  243 (268)
Q Consensus       166 G~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~-~~g~~~~~~s~  243 (268)
                      ++||+++. .+ +                                      +..+|+. .+++..+.- .+|+.+..+..
T Consensus       115 ~~L~vSdg-s~-~--------------------------------------l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X          115 SHLYMSDG-TA-V--------------------------------------IRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             SCEEEECS-SS-E--------------------------------------EEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             CEEEEECC-CC-e--------------------------------------EEEEeCCCCeEEEEEEEccCCccccccee
Confidence            47999874 32 2                                      2333332 333333221 13445555556


Q ss_pred             EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          244 VEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       244 ~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      ....+|+||+..+..|.|++||.++
T Consensus       155 Le~~~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          155 LEWVNGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EEEETTEEEEEETTTTEEEEECTTT
T ss_pred             eEEeCCEEEEEECCCCeEEEEECCC
Confidence            6667999999999999999999875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=2.4e-09  Score=97.56  Aligned_cols=162  Identities=12%  Similarity=-0.026  Sum_probs=102.0

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEeCC------
Q 024436           90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQLP------  154 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~l~------  154 (268)
                      +.|.+||++++++.........| ||+++|||++|||+++         ..+.|.++|....+.  ...+ .++      
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--v~~I-~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--IADI-ELPDAPRFL  174 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEE-EETTCCCCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE--EEEE-ECCCccccc
Confidence            89999999998877665555679 9999999999999986         356899998864321  1111 122      


Q ss_pred             --CCCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436          155 --GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  230 (268)
Q Consensus       155 --g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  230 (268)
                        ..|.++++++||+ +||+.......    |.. ...+++++.+|+++.. . ...+....   ..+.+.++|+++.+-
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~~~~~~----VsVID~~t~kvv~~I~v~g~-~-~~~p~g~~---~~v~~~~dG~~~~V~  245 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQFSPAPA----VGVVDLEGKTFDRMLDVPDC-Y-HIFPASPT---VFYMNCRDGSLARVD  245 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEECSSSCE----EEEEETTTTEEEEEEECCSE-E-EEEEEETT---EEEEEETTSSEEEEE
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCCe----EEEEECCCCeEEEEEEcCCc-e-eeccCCCc---EEEEEcCCCCEEEEE
Confidence              3699999999996 89988652222    333 4678999999988632 0 01111111   245566677766554


Q ss_pred             EcCCCCceec--------------eEEEEEeCCEEEEeeCCCCeEEEEeC
Q 024436          231 EEIGRKMWRS--------------ISEVEEKDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       231 ~~~~g~~~~~--------------~s~~~~~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      . .+++....              .......++++|+.+. .+.|.++|.
T Consensus       246 ~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~  293 (426)
T 3c75_H          246 F-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADL  293 (426)
T ss_dssp             C-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEE
T ss_pred             C-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEec
Confidence            3 33332210              0011223466777665 457777775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.14  E-value=4.4e-08  Score=86.47  Aligned_cols=165  Identities=15%  Similarity=0.195  Sum_probs=111.6

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRL   92 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~-~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v   92 (268)
                      +.+..+..+.  .+.+++++|+|+.+++. ..++.|..++...........         ..+++.++.  +.....+.|
T Consensus        65 ~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~--~~~~~~~~v  140 (391)
T 1l0q_A           65 NVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY--VTNNGDKTV  140 (391)
T ss_dssp             EEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE--EEETTTTEE
T ss_pred             eEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEE--EEeCCCCEE
Confidence            3555666665  89999999999977554 467999999987543222211         123333332  234567899


Q ss_pred             EEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEE
Q 024436           93 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVG  171 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va  171 (268)
                      +.+|..+++..........|++++|+|||+.||++....++|+.|++..+.   ..........|.+++++++|+ +|++
T Consensus       141 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---VIDTVKVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---EEEEEecCCCccceEECCCCCEEEEE
Confidence            999998888766666567789999999999999999899999999987532   222222334688999999997 6666


Q ss_pred             Ee--cCCCcceeeeEeeC-ccceeeeecccc
Q 024436          172 IH--SRRKGISKLVLSFP-WIGNVLIKLPID  199 (268)
Q Consensus       172 ~~--~~~~~~~~~v~~~~-~~g~~l~~i~~~  199 (268)
                      ..  ..+ .    |..+. ..++.+..++..
T Consensus       218 ~~~~~~~-~----v~~~d~~~~~~~~~~~~~  243 (391)
T 1l0q_A          218 NVDKYFN-T----VSMIDTGTNKITARIPVG  243 (391)
T ss_dssp             EECSSCC-E----EEEEETTTTEEEEEEECC
T ss_pred             ecCcCCC-c----EEEEECCCCeEEEEEecC
Confidence            64  233 2    44443 456666665543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.14  E-value=2.6e-08  Score=93.51  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=103.3

Q ss_pred             CCEEEEecCCCCCcceEEECC----CCCEEEEEe-CCCeEEEEeCCC-CeEEEEEEc--------------------CCC
Q 024436           23 QGVVQYQIEGAIGPESLAFDA----LGEGPYTGV-SDGRIIKWHQDQ-RRWLHFART--------------------SPN   76 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~----dG~~l~~~~-~~g~I~~~~~~g-~~~~~~~~~--------------------~~~   76 (268)
                      +.+.+++.+.  .|++++++|    ||+.+|+.. .++.|..++... +.+..+...                    +++
T Consensus       213 ~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~  290 (543)
T 1nir_A          213 TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE  290 (543)
T ss_dssp             EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred             cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence            3566677554  799999999    999998876 479998888653 322222110                    111


Q ss_pred             CCeeEEEeecCCcceEEEEeCCCCeE-E-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC
Q 024436           77 RNHISVILSGDKTGRLMKYDPATKQV-T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP  154 (268)
Q Consensus        77 ~~~~~~~~~~~~~g~v~~~d~~~~~~-~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~  154 (268)
                      ++.+  +......+.|+.+|..+++. . .......+|.+++|+|||+++|++....++|.+||.+.++   ........
T Consensus       291 ~~~~--~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~---l~~~i~~g  365 (543)
T 1nir_A          291 HPEF--IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR---LSALVDVG  365 (543)
T ss_dssp             SSEE--EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE---EEEEEECS
T ss_pred             CCEE--EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe---EEEeeccC
Confidence            1111  22335678899999875432 1 1223457899999999999999999989999999987532   21112222


Q ss_pred             CCC---CceEE-cCC-CCEEEEEecCCCcceeeeEeeC-cc-------ceeeeecccc
Q 024436          155 GFP---DNIKR-SPR-GGFWVGIHSRRKGISKLVLSFP-WI-------GNVLIKLPID  199 (268)
Q Consensus       155 g~P---dgia~-d~d-G~l~va~~~~~~~~~~~v~~~~-~~-------g~~l~~i~~~  199 (268)
                      ..|   .|..+ +++ |.+|++.......    |..+. ..       ++.+..++..
T Consensus       366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~----V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          366 KTPHPGRGANFVHPKYGPVWSTSHLGDGS----ISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSE----EEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             CCCCCCCCcccCCCCCccEEEeccCCCce----EEEEEeCCCCCchhcCeEEEEEEcC
Confidence            234   25554 676 6789887633222    33332 22       6677777653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.13  E-value=2.3e-08  Score=89.60  Aligned_cols=218  Identities=16%  Similarity=0.093  Sum_probs=133.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++++++|++++++..++.|..|+.+.. ....+..         ..+++.++.  ......+.|+.+|.++++...
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVY--CSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEE--EEETTTTEEEEEETTTTEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEE--EEecCCCcEEEEECCCCcEEE
Confidence            4567899999998888888999999997643 2222221         112233222  233456899999998887766


Q ss_pred             eecCCCCcceEEEccCCCEEEEEec-------CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCC
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAET-------TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~-------~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      .......+.+++++|||+.||++..       .++.|+.|++.+++   .......++.|.+++++++|+ +|++....+
T Consensus       249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTIGPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeeccCCCCcceEEECCCCCEEEEEecCCC
Confidence            6655667899999999999998875       46799999987532   111112234688999999996 777766655


Q ss_pred             CcceeeeEeeC-ccceeeeeccccceeeeeeccccCCC---------------------cEEEEEECC-CCCEEEEEEcC
Q 024436          177 KGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN---------------------GGMAMRISE-QGNVLEILEEI  233 (268)
Q Consensus       177 ~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~G~~~~~~~~~  233 (268)
                      .     +..+. ..++.+..++........++.+....                     .+.+..++. +++.+..+...
T Consensus       326 ~-----v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~  400 (433)
T 3bws_A          326 K-----IEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG  400 (433)
T ss_dssp             E-----EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred             E-----EEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence            3     44443 35666665543321111111100000                     023444444 34555444431


Q ss_pred             CCCceeceEEEEE--eCCEEEEeeCCCCeEEEEeCC
Q 024436          234 GRKMWRSISEVEE--KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       234 ~g~~~~~~s~~~~--~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                           ..+..+..  .+..||+++..++.|.+++++
T Consensus       401 -----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          401 -----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             -----SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             -----CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                 12344444  345788888889999998875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.12  E-value=1.1e-07  Score=84.99  Aligned_cols=144  Identities=11%  Similarity=0.031  Sum_probs=96.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------------cCCCCCeeEEEeecCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------------TSPNRNHISVILSGDK   88 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~   88 (268)
                      .+..++.+.  .|.+++++|++.+++++..++.|..|+.+.........               ..+++.   .+.....
T Consensus       115 ~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~s~~~  189 (433)
T 3bws_A          115 FISRFKTGF--QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE---LWVSQMQ  189 (433)
T ss_dssp             EEEEEECSS--CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE---EEEEEGG
T ss_pred             EEEEEcCCC--CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE---EEEEECC
Confidence            445555554  68899999988777776678899999976432222110               011111   1234445


Q ss_pred             cceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436           89 TGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      .+.|..+|.++++... +......+++++|+||++.+|++....+.|++|++..+.   ........+.|.+++++++|+
T Consensus       190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~  266 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---EIRKTDKIGLPRGLLLSKDGK  266 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEECCCCSEEEEEEECTTSS
T ss_pred             CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---EEEEecCCCCceEEEEcCCCC
Confidence            6889999988765543 444566789999999999999999888999999987421   111112234588999999996


Q ss_pred             -EEEEEecC
Q 024436          168 -FWVGIHSR  175 (268)
Q Consensus       168 -l~va~~~~  175 (268)
                       +|++....
T Consensus       267 ~l~~~~~~~  275 (433)
T 3bws_A          267 ELYIAQFSA  275 (433)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEECCC
Confidence             66666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=2.9e-08  Score=85.02  Aligned_cols=185  Identities=12%  Similarity=0.092  Sum_probs=125.2

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcC---------------CCCCeeEEEeecC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTS---------------PNRNHISVILSGD   87 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~~~   87 (268)
                      -+..+..+......+..+.+||+++++... +++|+.++++|+.+..+....               +++++   ++...
T Consensus        67 ~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~---lv~~~  143 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY---LVPLF  143 (276)
T ss_dssp             EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE---EEEET
T ss_pred             EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE---EEEec
Confidence            444555542234667899999999999888 899999999998654443211               11122   23445


Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CC----CCCCceE
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LP----GFPDNIK  161 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~----g~Pdgia  161 (268)
                      .+++|+.+|++ |+..--......|.++.+.++|+ ++|++...++|+.|+.++++.  .-.+..  ++    ..|.+++
T Consensus       144 ~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~  219 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLF  219 (276)
T ss_dssp             TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEE
T ss_pred             CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccce
Confidence            67899999998 76544444345788999999997 778888889999999884321  112221  22    1488999


Q ss_pred             EcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceece
Q 024436          162 RSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       162 ~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~  241 (268)
                      +.++|++|++.+.+++.       +.                     ..... +.++.++++|+++..|.+.  ..+..+
T Consensus       220 ~~~~G~i~v~~~~g~~~-------~~---------------------~~~~~-~~~~~~~~~g~~~W~~~~~--~~~~~~  268 (276)
T 3no2_A          220 PLQNGGLYICNWQGHDR-------EA---------------------GKGKH-PQLVEIDSEGKVVWQLNDK--VKFGMI  268 (276)
T ss_dssp             ECTTSCEEEEEECTTCT-------TG---------------------GGSCC-CSEEEECTTSBEEEEECCT--TTSCCC
T ss_pred             EcCCCCEEEEeccCccc-------cc---------------------cccCC-ceEEEECCCCCEEEEecCc--ccccce
Confidence            99999999999877531       00                     00011 3488899999999999764  446777


Q ss_pred             EEEEE
Q 024436          242 SEVEE  246 (268)
Q Consensus       242 s~~~~  246 (268)
                      |++..
T Consensus       269 ~~~~~  273 (276)
T 3no2_A          269 STICP  273 (276)
T ss_dssp             CEEEE
T ss_pred             eeeee
Confidence            77643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.11  E-value=3.1e-08  Score=88.64  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEeCC-------
Q 024436           91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQLP-------  154 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~l~-------  154 (268)
                      .|++||++++++.........| +|+++|||++|||+++         ..+.|.+||.+..+.  ...+ .++       
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i-~~~~~~~~~~  123 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADI-ELPDAPRFDV  123 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEE-ECCCcccccc
Confidence            6788888777765444444567 9999999999999985         256799999864211  1111 122       


Q ss_pred             -CCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeee-ccccc
Q 024436          155 -GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIK-LPIDI  200 (268)
Q Consensus       155 -g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~-i~~~~  200 (268)
                       ..|.+++++|||+ ||++.......    |..+..+++++.. ++.+.
T Consensus       124 g~~p~~~~~spDG~~l~v~n~~~~~~----v~viD~t~~~~~~~i~~~~  168 (373)
T 2mad_H          124 GPYSWMNANTPNNADLLFFQFAAGPA----VGLVVQGGSSDDQLLSSPT  168 (373)
T ss_pred             CCCccceEECCCCCEEEEEecCCCCe----EEEEECCCCEEeEEcCCCc
Confidence             2599999999996 88887642222    3333367888888 88763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=2e-09  Score=101.05  Aligned_cols=198  Identities=13%  Similarity=0.034  Sum_probs=120.3

Q ss_pred             CCEEEEecCCCCCcceEEE-C-CCCCEEEEEe------------------CCCeEEEEeCCCCeEEEEEE---------c
Q 024436           23 QGVVQYQIEGAIGPESLAF-D-ALGEGPYTGV------------------SDGRIIKWHQDQRRWLHFAR---------T   73 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~-~-~dG~~l~~~~------------------~~g~I~~~~~~g~~~~~~~~---------~   73 (268)
                      +....+.+|....|+|+++ . |+++.+|+..                  .++.+..||.+...+.....         .
T Consensus       123 ~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~  202 (595)
T 1fwx_A          123 KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDA  202 (595)
T ss_dssp             EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEE
T ss_pred             eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEE
Confidence            3455566666678999998 5 8999898873                  24567777777543221111         1


Q ss_pred             CCCCCeeEEEeecC-----------------------------------CcceEEEEeCCC--CeE-EEeecCCCCcceE
Q 024436           74 SPNRNHISVILSGD-----------------------------------KTGRLMKYDPAT--KQV-TVLLGNLSFPNGV  115 (268)
Q Consensus        74 ~~~~~~~~~~~~~~-----------------------------------~~g~v~~~d~~~--~~~-~~~~~~~~~pnGi  115 (268)
                      ++++.|+.......                                   .-+.|..+|..+  +++ .........|.|+
T Consensus       203 spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv  282 (595)
T 1fwx_A          203 DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGC  282 (595)
T ss_dssp             CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCE
T ss_pred             CCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEE
Confidence            22222222111000                                   013588899986  333 3333334689999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEEccCC------CCC-ceeEEEeC--CCCCCceEEcCCCCEEEEEecCCCcceeeeEee
Q 024436          116 ALSEDGNYILLAETTSCRILRYWLKTS------KAG-TIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSF  186 (268)
Q Consensus       116 a~spdg~~lyva~~~~~~I~~~~~~~~------~~g-~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~  186 (268)
                      .++|||+++||++..+++|.+|+.+..      ++. ...+..++  ...|.++++|++|++|++.+-...     |.++
T Consensus       283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsq-----V~kw  357 (595)
T 1fwx_A          283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ-----VVKW  357 (595)
T ss_dssp             EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE-----EEEE
T ss_pred             EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCc-----EEEE
Confidence            999999999999999999999999731      111 11233443  246999999999999999998863     4333


Q ss_pred             Ccc-----------ceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEc
Q 024436          187 PWI-----------GNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE  232 (268)
Q Consensus       187 ~~~-----------g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  232 (268)
                      ...           .+++.++++..++-+.+.       .+...+++||+.+.+...
T Consensus       358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~-------~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT-------VMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE-------TTTTSTTCCSSEEEEEES
T ss_pred             EhhHhhhhhcccccceeEEEeeccccccccee-------ccceEeCCCCCEEEEcCC
Confidence            311           456777776543211111       012344566777666653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.09  E-value=7.1e-08  Score=86.30  Aligned_cols=53  Identities=11%  Similarity=-0.011  Sum_probs=38.6

Q ss_pred             cceEEEEeCCCCeEEEeec-C-------CCCcceEEEccCCCEEEEEecC-CcEEEEEEccCC
Q 024436           89 TGRLMKYDPATKQVTVLLG-N-------LSFPNGVALSEDGNYILLAETT-SCRILRYWLKTS  142 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~-~-------~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~  142 (268)
                      .+.|..||+++.++..... +       ...|.+++++|||++|||++.. .+.|.++| +++
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence            4567777777654432211 1       2579999999999999999865 68999999 753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=4.2e-08  Score=83.80  Aligned_cols=134  Identities=10%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             CcceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcC
Q 024436           88 KTGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSP  164 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~  164 (268)
                      ..++|.++|++++++....  +...++.|++++  |++||+++...+++++||.+.     .++..+++- .|.|..+.+
T Consensus        42 ~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-----~~v~~~i~~g~~~g~glt~  114 (266)
T 2iwa_A           42 GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-----LSNIKNFTHQMKDGWGLAT  114 (266)
T ss_dssp             TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT-----TEEEEEEECCSSSCCEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC-----CcEEEEEECCCCCeEEEEE
Confidence            4679999999999876543  344566677776  568999999999999999874     233333321 366666666


Q ss_pred             CC-CEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEc-CCCCceece
Q 024436          165 RG-GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSI  241 (268)
Q Consensus       165 dG-~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~-~~g~~~~~~  241 (268)
                      || ++|+++ +.+ .                                      +..+|++ .+++..+.- .+++.+..+
T Consensus       115 Dg~~l~vs~-gs~-~--------------------------------------l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A          115 DGKILYGSD-GTS-I--------------------------------------LYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSSSEEEEC-SSS-E--------------------------------------EEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCCEEEEEC-CCC-e--------------------------------------EEEEECCCCcEEEEEEECCCCcccccc
Confidence            66 589876 332 1                                      3333332 233333321 123334444


Q ss_pred             EEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          242 SEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       242 s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      ..+...+|+||++++..+.|++||.++
T Consensus       155 nele~~dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          155 NELEYINGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             eeEEEECCEEEEecCCCCeEEEEECCC
Confidence            455555889999999999999999875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=3.2e-08  Score=90.14  Aligned_cols=102  Identities=10%  Similarity=-0.073  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEEc-----------------CC
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV----------SDGRIIKWHQDQRRWLHFART-----------------SP   75 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~----------~~g~I~~~~~~g~~~~~~~~~-----------------~~   75 (268)
                      +-+.+|+++.  .| +++++|||+.+|+.+          .++.|..||+...........                 ++
T Consensus       110 ~vv~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp  186 (426)
T 3c75_H          110 RILGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP  186 (426)
T ss_dssp             EEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred             EEEEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence            3567788876  68 999999999888876          367899999865433322222                 12


Q ss_pred             CCCeeEEEeecCCcceEEEEeCCCCeEEEeecC----CCCcce----EEEccCCCEEEEEe
Q 024436           76 NRNHISVILSGDKTGRLMKYDPATKQVTVLLGN----LSFPNG----VALSEDGNYILLAE  128 (268)
Q Consensus        76 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~pnG----ia~spdg~~lyva~  128 (268)
                      ++.+++... ....+.|..+|.+++++..-..-    ...|.|    +++++||+.+||+.
T Consensus       187 DGk~lyV~n-~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          187 DNKNLLFYQ-FSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             TSSEEEEEE-CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             CCCEEEEEe-cCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence            333443321 12367899999998876543321    122334    56666666555554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.08  E-value=1.2e-07  Score=81.33  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=90.2

Q ss_pred             CEEEEecCCCC-CcceEEECCCCCEEEE-EeCCCeEEEEeCCC-CeEEEEEEc--------------CCCCCeeEEEeec
Q 024436           24 GVVQYQIEGAI-GPESLAFDALGEGPYT-GVSDGRIIKWHQDQ-RRWLHFART--------------SPNRNHISVILSG   86 (268)
Q Consensus        24 ~~~~i~~~~~~-~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g-~~~~~~~~~--------------~~~~~~~~~~~~~   86 (268)
                      .+..+..+... .|.+++++|||+.+|+ ...+++|..++... +....+...              ++++.++......
T Consensus        23 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  102 (337)
T 1pby_B           23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecc
Confidence            45566666432 4999999999976655 44578999999754 432222211              1223333222100


Q ss_pred             -----C----CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC
Q 024436           87 -----D----KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP  157 (268)
Q Consensus        87 -----~----~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P  157 (268)
                           .    ..+.|+.+|.++++..........|++++|+|||++||++   ++.|++|++++++   ..........+
T Consensus       103 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~---~~~~~~~~~~~  176 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEAGT---LVEDKPIQSWE  176 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEEEETTTTE---EEEEECSTTTT
T ss_pred             cccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEEEECCCCc---EeeeeeccccC
Confidence                 1    3578999999888776555555679999999999999998   4789999987532   11111222224


Q ss_pred             CceEEcCCCC-EEEEE
Q 024436          158 DNIKRSPRGG-FWVGI  172 (268)
Q Consensus       158 dgia~d~dG~-l~va~  172 (268)
                      ..+++++||+ +|++.
T Consensus       177 ~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          177 AETYAQPDVLAVWNQH  192 (337)
T ss_dssp             TTTBCCCBCCCCCCCC
T ss_pred             CCceeCCCccEEeeec
Confidence            5567888886 55544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=1.4e-08  Score=95.84  Aligned_cols=173  Identities=10%  Similarity=0.033  Sum_probs=106.8

Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEE
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKR  162 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~  162 (268)
                      .....++|..+|.+++++.........|++++++|||++|||++. .+.|.+||+...+   .+...+  ....|.++++
T Consensus       172 ~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t---~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          172 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKE---PTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSS---CCEEEEEECCSEEEEEEE
T ss_pred             EeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCC---CcEeEEEecCCCCceeEE
Confidence            345678899999988877655545567899999999999999974 6799999985111   122233  2346999999


Q ss_pred             c----CCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccce-----------eeeeeccccCCCcEEEEEECCCCC
Q 024436          163 S----PRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIV-----------KIHSSLVKLSGNGGMAMRISEQGN  225 (268)
Q Consensus       163 d----~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~G~  225 (268)
                      +    +||+ +|+++...+.     +.. ...+.+.+..+++...           .+..+....... ..++.+..+|+
T Consensus       248 s~~~~pDGk~l~v~n~~~~~-----v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-~~vv~~~~~g~  321 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQ-----YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKETGK  321 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTE-----EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTTTE
T ss_pred             ccccCCCCCEEEEEEccCCe-----EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC-EEEEEecCCCe
Confidence            9    6996 8888887663     333 3567778887775421           111111111111 34444444455


Q ss_pred             EEEEE-Ec---------CCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          226 VLEIL-EE---------IGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       226 ~~~~~-~~---------~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +..+- .+         +.++..+ -......+.++|+++..+|.|+++|+++
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~-d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLH-DGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEE-EEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEecCCCccceeeeeecccccc-CceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            43321 11         0122111 1112224567999999999999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.07  E-value=5.1e-09  Score=94.10  Aligned_cols=102  Identities=18%  Similarity=0.118  Sum_probs=73.4

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEeCC-----
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQLP-----  154 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~l~-----  154 (268)
                      .+.|+++|++++++.........|+ ++++|||++|||+++         ..+.|.+||....+.  ...+ .++     
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v--~~~I-~v~~g~r~  133 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADI-ELPDAPRF  133 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEE-EETTCCCC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE--EEEE-ECCCcccc
Confidence            4688899998887765555455685 999999999999985         246799999875321  1111 122     


Q ss_pred             ---CCCCceEEcCCCC-EEEEEec-CCCcceeeeEe-eCccceeeeecccc
Q 024436          155 ---GFPDNIKRSPRGG-FWVGIHS-RRKGISKLVLS-FPWIGNVLIKLPID  199 (268)
Q Consensus       155 ---g~Pdgia~d~dG~-l~va~~~-~~~~~~~~v~~-~~~~g~~l~~i~~~  199 (268)
                         ..|.++++++||+ +||+... .+ .    |.. ...+++++.+|+.+
T Consensus       134 ~~g~~P~~~a~spDGk~lyVan~~~~~-~----VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          134 LVGTYPWMTSLTPDGKTLLFYQFSPAP-A----VGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSC-E----EEEEETTTTEEEEEEECC
T ss_pred             ccCCCCceEEEcCCCCEEEEEEcCCCC-e----EEEEECCCCcEEEEEECC
Confidence               1699999999996 8998864 33 2    433 46789999999876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.07  E-value=1.4e-07  Score=88.93  Aligned_cols=164  Identities=9%  Similarity=-0.060  Sum_probs=111.7

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC---CCeEEEEE--------EcC----CCCCeeEEEeecCC
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD---QRRWLHFA--------RTS----PNRNHISVILSGDK   88 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~---g~~~~~~~--------~~~----~~~~~~~~~~~~~~   88 (268)
                      -+.+|+++.  .|++++++|||+.+|+...++.|..|+..   ++....+.        ..+    +++.+++....  .
T Consensus       189 v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~--~  264 (567)
T 1qks_A          189 IKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--W  264 (567)
T ss_dssp             EEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--E
T ss_pred             EEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc--c
Confidence            455666665  79999999999999998889999999983   33222111        123    35555544322  3


Q ss_pred             cceEEEEeCCCCeEEEeec--C----------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE-EeCCC
Q 024436           89 TGRLMKYDPATKQVTVLLG--N----------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV-AQLPG  155 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~--~----------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~-~~l~g  155 (268)
                      .+.+..+|.++.++.....  +          .....+|..++++..++++...+++|+.++.....  ...+. .....
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i~~~~  342 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEISAER  342 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEEECCS
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeeeeccc
Confidence            4678888988776544321  1          11346899999999999999899999999987432  11111 12234


Q ss_pred             CCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccc
Q 024436          156 FPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPI  198 (268)
Q Consensus       156 ~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~  198 (268)
                      .|+++.+|++|+ +|+++...+ +    |.. ...+++++..+++
T Consensus       343 ~~~d~~~~pdgr~~~va~~~sn-~----V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          343 FLHDGGLDGSHRYFITAANARN-K----LVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGT-E----EEEEETTTTEEEEEEEC
T ss_pred             cccCceECCCCCEEEEEeCCCC-e----EEEEECCCCcEEEEEec
Confidence            688999999997 677777665 3    333 4578888888877

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.07  E-value=1.8e-08  Score=88.22  Aligned_cols=130  Identities=12%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             EEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCC--CeE
Q 024436           26 VQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPAT--KQV  102 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~  102 (268)
                      ..|+.+. ..||++++++. |.+|+++..+++|.++++++...+.+                       .++.-+  +  
T Consensus         6 i~~~~~~-~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-----------------------~~~~~s~~g--   59 (334)
T 2p9w_A            6 IDVKVKN-LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-----------------------VIDGASSNG--   59 (334)
T ss_dssp             EEECCTT-CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-----------------------CCTTTCCSS--
T ss_pred             EEecCcc-cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-----------------------ecCCccccC--
Confidence            3444443 58999999884 55445555789999999875432221                       000000  1  


Q ss_pred             EEeecCCCCcceEEE---ccCCCEEEE-Eec------------CCcEEEEEEccCCCCCceeEEEeCC------------
Q 024436          103 TVLLGNLSFPNGVAL---SEDGNYILL-AET------------TSCRILRYWLKTSKAGTIEIVAQLP------------  154 (268)
Q Consensus       103 ~~~~~~~~~pnGia~---spdg~~lyv-a~~------------~~~~I~~~~~~~~~~g~~~~~~~l~------------  154 (268)
                          +....|.||.+   +|+|+ |+| ++.            ..+.|.+|++++...+......+|+            
T Consensus        60 ----~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~  134 (334)
T 2p9w_A           60 ----DGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGK  134 (334)
T ss_dssp             ----CCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSS
T ss_pred             ----CCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccc
Confidence                11123579999   78864 666 552            3578999999822112222233331            


Q ss_pred             --CCCCceEEcCCCCEEEEEecC-CCcceeeeEeeCccce
Q 024436          155 --GFPDNIKRSPRGGFWVGIHSR-RKGISKLVLSFPWIGN  191 (268)
Q Consensus       155 --g~Pdgia~d~dG~l~va~~~~-~~~~~~~v~~~~~~g~  191 (268)
                        +.|+.|++|++|+.||+.... ..     |.+..++|+
T Consensus       135 ~~~~~nDvavD~~GnaYVt~s~~~~~-----I~rV~pdG~  169 (334)
T 2p9w_A          135 RPFGVVQSAQDRDGNSYVAFALGMPA-----IARVSADGK  169 (334)
T ss_dssp             CCEEEEEEEECTTSCEEEEEEESSCE-----EEEECTTSC
T ss_pred             cccCCceeEECCCCCEEEeCCCCCCe-----EEEEeCCCC
Confidence              248899999999999977654 32     445555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.07  E-value=9.1e-08  Score=82.31  Aligned_cols=149  Identities=12%  Similarity=0.178  Sum_probs=92.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeC-CCCeEEEEEE-----------cCCCCCeeEEEeecCCcc
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQ-DQRRWLHFAR-----------TSPNRNHISVILSGDKTG   90 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~-~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g   90 (268)
                      .+..++.+.  .|.+++++|+|+.+++.. .++.|..++. ++........           .++++.++.  ......+
T Consensus        76 ~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~--~~~~~~~  151 (343)
T 1ri6_A           76 FAAESALPG--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW--VPALKQD  151 (343)
T ss_dssp             EEEEEECSS--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE--EEEGGGT
T ss_pred             eccccccCC--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEE--EecCCCC
Confidence            344455544  799999999999776655 4788888876 3321111111           122333332  2323456


Q ss_pred             eEEEEeCCC-CeEEEe------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC--CCCCceeEEEeCC------C
Q 024436           91 RLMKYDPAT-KQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIVAQLP------G  155 (268)
Q Consensus        91 ~v~~~d~~~-~~~~~~------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~--~~~g~~~~~~~l~------g  155 (268)
                      .|+.+|.++ +++...      ......|++++|+|||++||+++...++|..|+++.  +.......+..++      .
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  231 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  231 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence            788877765 655421      223457899999999999999998889999999963  2221122222222      1


Q ss_pred             CCCceEEcCCCC-EEEEEecCC
Q 024436          156 FPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       156 ~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      .|.+++++++|+ ||++....+
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTT
T ss_pred             CccceEECCCCCEEEEEecCCC
Confidence            344699999996 666665544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.06  E-value=1.3e-08  Score=90.45  Aligned_cols=138  Identities=14%  Similarity=0.022  Sum_probs=83.7

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEeC------
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQL------  153 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~l------  153 (268)
                      .+.|++||++++++.........| +++|+|||++||+++.         ..+.|.+|+.+..+.  ...+...      
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~~~  106 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRVQG  106 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBCCB
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCcccccc
Confidence            457888888777765444444568 9999999999999985         246799999864221  1222111      


Q ss_pred             CCCCCceEEcCCCC-EEEEEecCCCcceeeeEee-Cccceeeee-ccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436          154 PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIK-LPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  230 (268)
Q Consensus       154 ~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  230 (268)
                      ...|.++++++||+ ||++.......    |..+ ..+++.+.. ++.+........+.. +  ...+.+.++|++..+-
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~----v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~-~--~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATS----IGIVDVAKGDYVEDVTAAAGCWSVIPQPNR-P--RSFMTICGDGGLLTIN  179 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEE----EEEEETTTTEEEEEEGGGTTEEEEEECTTS-S--SEEEEEETTSSEEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCe----EEEEECCCCcEEEEEecCCCcceeEEcCCC-C--eeEEEECCCCcEEEEE
Confidence            13699999999996 78888752222    4444 467888888 776532111111111 1  1245556666655544


Q ss_pred             EcCCCC
Q 024436          231 EEIGRK  236 (268)
Q Consensus       231 ~~~~g~  236 (268)
                      .+.+|+
T Consensus       180 ~~~~g~  185 (361)
T 2oiz_A          180 LGEDGK  185 (361)
T ss_dssp             ECTTSS
T ss_pred             ECCCCc
Confidence            333343

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.02  E-value=1.6e-07  Score=83.34  Aligned_cols=85  Identities=12%  Similarity=0.034  Sum_probs=59.5

Q ss_pred             EEEccCCCEEEEEec----------CCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCC-EEEEEecCCCccee
Q 024436          115 VALSEDGNYILLAET----------TSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGG-FWVGIHSRRKGISK  181 (268)
Q Consensus       115 ia~spdg~~lyva~~----------~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~-l~va~~~~~~~~~~  181 (268)
                      ++++||++++||+..          ..++|++||.+..     +.+..  .+. |.+|++++||+ ||++..  + .   
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-----~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~-~---  326 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-----QRVARIPGRD-ALSMTIDQQRNLMLTLDG--G-N---  326 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-----EEEEEEECTT-CCEEEEETTTTEEEEECS--S-C---
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-----cEEEEEecCC-eeEEEECCCCCEEEEeCC--C-e---
Confidence            999999999999865          2458999998742     33333  456 99999999997 566554  3 2   


Q ss_pred             eeEee-Cccc--eeeeec-cccceeeeeeccccCCCcEEEEEECCCCC
Q 024436          182 LVLSF-PWIG--NVLIKL-PIDIVKIHSSLVKLSGNGGMAMRISEQGN  225 (268)
Q Consensus       182 ~v~~~-~~~g--~~l~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  225 (268)
                       |..+ ..++  +.+.++ +.+.            . ...+.++|+|+
T Consensus       327 -v~v~D~~t~~l~~~~~i~~~G~------------~-P~~~~~~p~G~  360 (361)
T 2oiz_A          327 -VNVYDISQPEPKLLRTIEGAAE------------A-SLQVQFHPVGG  360 (361)
T ss_dssp             -EEEEECSSSSCEEEEEETTSCS------------S-EEEEEECCCSC
T ss_pred             -EEEEECCCCcceeeEEeccCCC------------C-cEEEEecCCCC
Confidence             4444 4678  888876 3331            1 45678888875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.00  E-value=1e-06  Score=74.77  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             ecCCC-CCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCcceEEEEe
Q 024436           29 QIEGA-IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        29 ~~~~~-~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      ++++. ..+.|++++|+++.+|+ ...+++|++++++|+.+..+...+          +++.|+   +.....++++.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~---vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFV---ISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEE---EEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEE---EEECCCCcEEEEE
Confidence            67765 67999999998776665 677899999999987544432111          111121   2223446666554


Q ss_pred             --CCCCeEE---EeecCC-CCc-----ceEEEccCCCEEEEEecCCc-EEEEEEccCCC-CCceeEEEe------C-CCC
Q 024436           97 --PATKQVT---VLLGNL-SFP-----NGVALSEDGNYILLAETTSC-RILRYWLKTSK-AGTIEIVAQ------L-PGF  156 (268)
Q Consensus        97 --~~~~~~~---~~~~~~-~~p-----nGia~spdg~~lyva~~~~~-~I~~~~~~~~~-~g~~~~~~~------l-~g~  156 (268)
                        .+ +++.   ...-.+ ..+     .||+++|++++||++..... +|+.|+  +-. ........+      + -.-
T Consensus        98 v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           98 LTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             ECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSC
T ss_pred             cCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCC
Confidence              44 3222   111111 234     79999999999999865544 788887  210 011222211      1 124


Q ss_pred             CCceEEcCC-CCEEEEEecCC
Q 024436          157 PDNIKRSPR-GGFWVGIHSRR  176 (268)
Q Consensus       157 Pdgia~d~d-G~l~va~~~~~  176 (268)
                      +.++++||. |++|+-...++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~  195 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESR  195 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTT
T ss_pred             ceeEEEcCCCCeEEEEECCCC
Confidence            788999985 56777665554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.99  E-value=4.6e-08  Score=86.98  Aligned_cols=142  Identities=12%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             CCCcceEEECCC----CCEEEEEeC---C----CeEEEEeCCCC--eE---EEE-EEcC------CCC------CeeEEE
Q 024436           33 AIGPESLAFDAL----GEGPYTGVS---D----GRIIKWHQDQR--RW---LHF-ARTS------PNR------NHISVI   83 (268)
Q Consensus        33 ~~~P~gia~~~d----G~~l~~~~~---~----g~I~~~~~~g~--~~---~~~-~~~~------~~~------~~~~~~   83 (268)
                      ..+|.||+++|+    |.+|++...   +    ++|.|++.++.  .+   ..+ ....      +++      .+++..
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            467999999998    554444332   3    78999987653  11   111 1111      110      122221


Q ss_pred             eec-----------CCcceEEEEeCCCCe---------EEEeecCCCCcceEEEccCCCEEEEEecCCcE---EEEEEcc
Q 024436           84 LSG-----------DKTGRLMKYDPATKQ---------VTVLLGNLSFPNGVALSEDGNYILLAETTSCR---ILRYWLK  140 (268)
Q Consensus        84 ~~~-----------~~~g~v~~~d~~~~~---------~~~~~~~~~~pnGia~spdg~~lyva~~~~~~---I~~~~~~  140 (268)
                      ..+           ...|+|+|++++ |+         .+....++..|+||+|+|+...||++|...++   |.++.. 
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-  229 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-  229 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-
Confidence            111           234799999998 54         45677888999999999943359999987754   555542 


Q ss_pred             CCCCC------------ceeEEEeC---CCCCCceEE-------cCCCCEEEEEecCC
Q 024436          141 TSKAG------------TIEIVAQL---PGFPDNIKR-------SPRGGFWVGIHSRR  176 (268)
Q Consensus       141 ~~~~g------------~~~~~~~l---~g~Pdgia~-------d~dG~l~va~~~~~  176 (268)
                      +...|            ........   ...|.|+++       +.+|++|++.+...
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~  287 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGS  287 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTT
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCC
Confidence            22111            01111122   135899999       56789999987765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.97  E-value=1e-07  Score=84.18  Aligned_cols=141  Identities=15%  Similarity=0.186  Sum_probs=86.5

Q ss_pred             CCCcceEEECCCCCEEEEEe-CCCeEEEEeCC--CCeEEEEE--E------------cCCCCCeeEEEeecCCcceEEEE
Q 024436           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQD--QRRWLHFA--R------------TSPNRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~--g~~~~~~~--~------------~~~~~~~~~~~~~~~~~g~v~~~   95 (268)
                      ...|++++++|||+.+|+.. .+++|..++.+  |+. ....  .            .++++.++....+....-.+|.+
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            35799999999999777654 57889888764  442 2211  1            12223343322222223345566


Q ss_pred             eCCCCeEEE----e---ecCC---C-------CcceEE-EccCCCEEEEEecCCc-----EEEEEEccCCCCCceeE---
Q 024436           96 DPATKQVTV----L---LGNL---S-------FPNGVA-LSEDGNYILLAETTSC-----RILRYWLKTSKAGTIEI---  149 (268)
Q Consensus        96 d~~~~~~~~----~---~~~~---~-------~pnGia-~spdg~~lyva~~~~~-----~I~~~~~~~~~~g~~~~---  149 (268)
                      |+++++...    +   ..+.   .       .|++++ |+|||++||+++...+     +|.+|+++..  +....   
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~--g~~~~~~~  300 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC--GSIEKQLF  300 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT--SCEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC--CCEEEeee
Confidence            765666431    1   1111   2       488999 9999999999987666     8999998621  22332   


Q ss_pred             EEe-CCCCCCceEEcC---CCC-EEEEEecCC
Q 024436          150 VAQ-LPGFPDNIKRSP---RGG-FWVGIHSRR  176 (268)
Q Consensus       150 ~~~-l~g~Pdgia~d~---dG~-l~va~~~~~  176 (268)
                      ... ....|.+++++|   ||+ ||++....+
T Consensus       301 ~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             eeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence            122 234699999999   786 666665544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.97  E-value=3e-07  Score=78.83  Aligned_cols=78  Identities=13%  Similarity=0.067  Sum_probs=47.3

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCCCcceeeeEee-C
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSF-P  187 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~-~  187 (268)
                      ..|++++|+|||++||++   .++|++|++++++   .......+..|.++++++||+ +|++.. .+ .    |..+ .
T Consensus       241 ~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~-~----i~v~d~  308 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA---YNVLESFDLEKNA---SIKRVPLPHSYYSVNVSTDGSTVWLGGA-LG-D----LAAYDA  308 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE---ESEEEEEETTTTE---EEEEEECSSCCCEEEECTTSCEEEEESB-SS-E----EEEEET
T ss_pred             CceeeEEECCCCCEEEEe---CCeEEEEECCCCc---CcceecCCCceeeEEECCCCCEEEEEcC-CC-c----EEEEEC
Confidence            356678888888888887   3788888876421   111122344688888888887 566532 22 2    3333 3


Q ss_pred             ccceeeeecccc
Q 024436          188 WIGNVLIKLPID  199 (268)
Q Consensus       188 ~~g~~l~~i~~~  199 (268)
                      .+++.+..++.+
T Consensus       309 ~~~~~~~~~~~~  320 (337)
T 1pby_B          309 ETLEKKGQVDLP  320 (337)
T ss_dssp             TTCCEEEEEECG
T ss_pred             cCCcEEEEEEcC
Confidence            456666665554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.96  E-value=1.7e-08  Score=90.25  Aligned_cols=159  Identities=8%  Similarity=-0.172  Sum_probs=95.6

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEeCC-------
Q 024436           91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQLP-------  154 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~l~-------  154 (268)
                      +|..||++++++..-......| |++++|||++|||+++         ..+.|.+||+...+.  ...+ .++       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I-~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADI-ELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEE-EETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEE-ECCCcccccc
Confidence            8889999988876655445668 9999999999999984         368899999875321  1111 122       


Q ss_pred             -CCCCceEEcCCCC-EEEEEecCCCcceeeeEe--eCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436          155 -GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLS--FPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  230 (268)
Q Consensus       155 -g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~--~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  230 (268)
                       ..|.++++++||+ +||+.......    +..  .....  +.+++.+. ++. ..+.. .  ...+...++|+++..-
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~----v~V~~iD~~t--v~~i~v~~-~~~-~~p~g-~--~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAA----AGLSVPGASD--DQLTKSAS-CFH-IHPGA-A--ATHYLGSCPASLAASD  191 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCE----EEEEETTTEE--EEEEECSS-CCC-CEEEE-T--TEEECCCCTTSCEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCe----EEEEEEchhh--ceEEECCC-ceE-EccCC-C--eEEEEEcCCCCEEEEE
Confidence             2599999999995 89998753322    333  32211  55665541 111 11111 1  1234555667664432


Q ss_pred             EcC----CCCcee----------ceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          231 EEI----GRKMWR----------SISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       231 ~~~----~g~~~~----------~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+.    +|+...          .+. +...++++|+.+.  +.|.++|++
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~-~~~~~~~~~~vs~--~~V~viD~~  239 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAA-QANYPGMLVWAVA--SSILQGDIP  239 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCE-EETTTTEEEECBS--SCCEEEECC
T ss_pred             CccccccCCeEEEEeeeeeeCCCCcc-ccccCCEEEEEcC--CEEEEEECC
Confidence            221    122210          111 2445677777776  889988874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.95  E-value=9.1e-08  Score=87.14  Aligned_cols=189  Identities=10%  Similarity=0.052  Sum_probs=117.5

Q ss_pred             CCCcceEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEEcC-------------CCCCeeEEEee--------
Q 024436           33 AIGPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTS-------------PNRNHISVILS--------   85 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~------g~I~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~--------   85 (268)
                      ...|+++.+.||| ++++...+      |.|..+|.++..+...-..+             ++++.+... +        
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS-~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSS-EWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEEC-BCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEc-cCcCccccc
Confidence            3479999999999 77776655      89999998743333221111             112222111 0        


Q ss_pred             ---------cCCcceEEEEeCCCCeEEEeecC---CCCcceEEE--ccCCCEEEEEec-----CCcEEEEEEccCCCCCc
Q 024436           86 ---------GDKTGRLMKYDPATKQVTVLLGN---LSFPNGVAL--SEDGNYILLAET-----TSCRILRYWLKTSKAGT  146 (268)
Q Consensus        86 ---------~~~~g~v~~~d~~~~~~~~~~~~---~~~pnGia~--spdg~~lyva~~-----~~~~I~~~~~~~~~~g~  146 (268)
                               .....+|..||.+++++.....-   ...|.+|.|  +|||+++||+..     .++.|++|..+++....
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~  294 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA  294 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence                     02357899999987765543322   246888877  999999999998     88999988877532211


Q ss_pred             eeEE--E------eC----------CCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeC----ccceeeeeccccce--
Q 024436          147 IEIV--A------QL----------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP----WIGNVLIKLPIDIV--  201 (268)
Q Consensus       147 ~~~~--~------~l----------~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~----~~g~~l~~i~~~~~--  201 (268)
                      ..++  .      .+          ++.|.+|.+++||+ |||++++.+.     |.+|.    ...+++..++++-.  
T Consensus       295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~-----VavfdV~d~~~~~lv~~I~tGG~~~  369 (462)
T 2ece_A          295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE-----VRQYDISNPFKPVLTGKVKLGGIFH  369 (462)
T ss_dssp             EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE-----EEEEECSSTTSCEEEEEEECBTTTT
T ss_pred             EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE-----EEEEEecCCCCcEEEEEEEeCCeec
Confidence            1111  0      11          25689999999997 8999998874     55543    23567777766410  


Q ss_pred             eeeeecc---ccCCCcEEEEEECCCCCEEEEEE
Q 024436          202 KIHSSLV---KLSGNGGMAMRISEQGNVLEILE  231 (268)
Q Consensus       202 ~~~~~~~---~~~~~~~~~~~~~~~G~~~~~~~  231 (268)
                      .+-.+-+   ...|+   -+.+++||+.+.+..
T Consensus       370 ~~~~~~G~~~~ggPr---~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          370 RADHPAGHKLTGAPQ---MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CBCCTTSCCCCSCCC---CEEECTTSSEEEEEC
T ss_pred             cccccccccCCCCCC---EEEEcCCCCEEEEEc
Confidence            0000000   01233   578888888777765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.94  E-value=1.1e-06  Score=81.48  Aligned_cols=220  Identities=15%  Similarity=0.147  Sum_probs=129.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~   94 (268)
                      .+..+... .....+++++|+|+.++++..++.|..++.+++....+..         .++++.++.   ....++.|..
T Consensus       336 ~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~---~~~~d~~v~~  411 (577)
T 2ymu_A          336 HLQTLTGH-SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKTVKL  411 (577)
T ss_dssp             EEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEE---EEETTSEEEE
T ss_pred             eeEEEeCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEE---EEeCCCEEEE
Confidence            44444322 3457889999999999999999999999988765433321         123333332   2234577888


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEec
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~  174 (268)
                      +|.....+..+...-....+++|+||+++|. +.+..+.|..|+.++..   ...+..-......++++|||+++++...
T Consensus       412 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~d~~v~~w~~~~~~---~~~~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          412 WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA-SASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             ECTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTSCE---EEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred             EeCCCCEEEEecCCCCCeEEEEECCCCCEEE-EEcCCCEEEEEECCCCE---EEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            8876444455555555568999999998665 55577899999976421   2222222234568999999998777665


Q ss_pred             CCCcceeeeEeeCccceeeeeccccceeeeeec-c-------ccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE
Q 024436          175 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSL-V-------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE  246 (268)
Q Consensus       175 ~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~  246 (268)
                      .+.     |..+..+++.+..+......++++. .       ..... +.+...+.+|+.+..+....+.    ++.+..
T Consensus       488 d~~-----i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-g~v~lwd~~~~~~~~~~~h~~~----v~~~~f  557 (577)
T 2ymu_A          488 DKT-----VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSS----VWGVAF  557 (577)
T ss_dssp             TSE-----EEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT-SEEEEECTTSCEEEEEECCSSC----EEEEEE
T ss_pred             CCE-----EEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc-CEEEEEeCCCCEEEEEcCCCCC----EEEEEE
Confidence            543     4445566776665543222232221 0       01111 3445556667777777654332    344444


Q ss_pred             -eCCEEEEeeCCCCeE
Q 024436          247 -KDGNLWIGSVNMPYA  261 (268)
Q Consensus       247 -~~g~Lyv~s~~~~~v  261 (268)
                       .+++.+++...+..|
T Consensus       558 s~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          558 SPDGQTIASASSDKTV  573 (577)
T ss_dssp             CTTSSCEEEEETTSCE
T ss_pred             cCCCCEEEEEeCCCEE
Confidence             455544443334444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=3e-08  Score=84.26  Aligned_cols=134  Identities=10%  Similarity=-0.013  Sum_probs=87.3

Q ss_pred             CCcceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEc
Q 024436           87 DKTGRLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRS  163 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d  163 (268)
                      ...|+|.++|++++++..- .+.-.+..||++.  |+.||++...++++++||.+.     .+...+  .++.+.|++.|
T Consensus        72 G~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T-----l~~~~ti~~~~eGwGLt~D  144 (268)
T 3nok_A           72 GHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP-----PQRERTTRYSGEGWGLCYW  144 (268)
T ss_dssp             TTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT-----TEEEEEEECSSCCCCEEEE
T ss_pred             CCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCc-----CcEEEEEeCCCceeEEecC
Confidence            4556799999999876433 3334455677665  557999999999999999874     233333  33456677765


Q ss_pred             CCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEc-CCCCceece
Q 024436          164 PRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSI  241 (268)
Q Consensus       164 ~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~-~~g~~~~~~  241 (268)
                      . ++||+++. .+ +                                      +..+|++ .+++..+.- .+|+.+..+
T Consensus       145 g-~~L~vSdG-s~-~--------------------------------------l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          145 N-GKLVRSDG-GT-M--------------------------------------LTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             T-TEEEEECS-SS-E--------------------------------------EEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             C-CEEEEECC-CC-E--------------------------------------EEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            3 46888863 32 1                                      3333332 333333221 134445555


Q ss_pred             EEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          242 SEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       242 s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      ......+|+||++.+..+.|++||.++
T Consensus       184 NeLe~~dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          184 NELECANGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             EEEEEETTEEEEEETTCSEEEEECTTT
T ss_pred             cccEEeCCEEEEEECCCCeEEEEeCCC
Confidence            666667899999999999999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.91  E-value=4.2e-07  Score=79.56  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             CEEEEecCCCC-------CcceEEE---CCCCCEEEEEe-------------CCCeEEEEeCC----CCeEEEEEEc---
Q 024436           24 GVVQYQIEGAI-------GPESLAF---DALGEGPYTGV-------------SDGRIIKWHQD----QRRWLHFART---   73 (268)
Q Consensus        24 ~~~~i~~~~~~-------~P~gia~---~~dG~~l~~~~-------------~~g~I~~~~~~----g~~~~~~~~~---   73 (268)
                      .+..+.++.+.       .|.||.+   +|+|+++++..             .+..|++++++    ++... .+..   
T Consensus        46 ~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~-~~dL~~~  124 (334)
T 2p9w_A           46 SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVW-SVNFEKV  124 (334)
T ss_dssp             CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE-EEESHHH
T ss_pred             eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEE-EecCccc
Confidence            44555555422       5789999   79999887643             26889999977    54311 1111   


Q ss_pred             ---------------------CCCCCeeEEEeecCCc-ceEEEEeCCCCeEEEee------cCCCCcceEEEccCCCEEE
Q 024436           74 ---------------------SPNRNHISVILSGDKT-GRLMKYDPATKQVTVLL------GNLSFPNGVALSEDGNYIL  125 (268)
Q Consensus        74 ---------------------~~~~~~~~~~~~~~~~-g~v~~~d~~~~~~~~~~------~~~~~pnGia~spdg~~ly  125 (268)
                                           ..+.-|+.+    ... +.|+++++++..+....      .....+|||++.|||+.|+
T Consensus       125 ~~~~~~~~g~~~~~~nDvavD~~GnaYVt~----s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li  200 (334)
T 2p9w_A          125 QDEFEKKAGKRPFGVVQSAQDRDGNSYVAF----ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLI  200 (334)
T ss_dssp             HHHHHHHHSSCCEEEEEEEECTTSCEEEEE----EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEE
T ss_pred             cccccccccccccCCceeEECCCCCEEEeC----CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEE
Confidence                                 111123332    234 78999999944344332      1234578999999999999


Q ss_pred             EEecCCcEEEEEEccCCCCCceeEEE------eCCCCCCce-EEcCCCCE-EEEEecCC
Q 024436          126 LAETTSCRILRYWLKTSKAGTIEIVA------QLPGFPDNI-KRSPRGGF-WVGIHSRR  176 (268)
Q Consensus       126 va~~~~~~I~~~~~~~~~~g~~~~~~------~l~g~Pdgi-a~d~dG~l-~va~~~~~  176 (268)
                      ++++ .++|++|+++...... ....      .+. .||+| +...+|++ +|+...+.
T Consensus       201 v~~~-~g~L~~fD~~~pv~~~-v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~~  256 (334)
T 2p9w_A          201 AFGG-PRALTAFDVSKPYAWP-EPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAPY  256 (334)
T ss_dssp             EESS-SSSEEEEECSSSSCCC-EECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETTE
T ss_pred             EEcC-CCeEEEEcCCCCccee-ecccccCCccccc-CcccccccccCCEEEEEEcCCCC
Confidence            9998 9999999987321100 1111      122 58995 66778886 77776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.90  E-value=1e-06  Score=81.63  Aligned_cols=217  Identities=16%  Similarity=0.183  Sum_probs=125.9

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      .....+++++|+|+.+++...++.|..|+.++.....+.         ...+++.++.   .....+.+..+|.....+.
T Consensus       303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~---~~~~dg~v~~~~~~~~~~~  379 (577)
T 2ymu_A          303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA---SASDDKTVKLWNRNGQLLQ  379 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSEEEEEETTCCEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE---EEeCCCEEEEEcCCCCEEE
Confidence            345789999999999999999999999988776433221         1123333332   2345677888887644455


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeee
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV  183 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v  183 (268)
                      .+...-...++++|+|||++|. +....+.|..|+.++..   ...+.........+++.+|++++++....+.     +
T Consensus       380 ~~~~~~~~v~~~~~s~dg~~l~-~~~~d~~v~~~~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-----v  450 (577)
T 2ymu_A          380 TLTGHSSSVRGVAFSPDGQTIA-SASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDDQTIASASDDKT-----V  450 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEE-EEETTSEEEEECTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSE-----E
T ss_pred             EecCCCCCeEEEEECCCCCEEE-EEeCCCEEEEEeCCCCE---EEEecCCCCCeEEEEECCCCCEEEEEcCCCE-----E
Confidence            5555555678999999998665 55567899999865421   2222222234567899999987776665543     4


Q ss_pred             EeeCccceeeeeccccceeeeeec-cc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE-eCCEEEEe
Q 024436          184 LSFPWIGNVLIKLPIDIVKIHSSL-VK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE-KDGNLWIG  254 (268)
Q Consensus       184 ~~~~~~g~~l~~i~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~-~~g~Lyv~  254 (268)
                      ..+..+++.+..+......++++. .+       .... +.+...+.+|+.+..+....+    .++.+.. .++++.++
T Consensus       451 ~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d-~~i~iw~~~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          451 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSS----SVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             EEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETT-SEEEEEETTSCEEEEEECCSS----CEEEEEECTTSSCEEE
T ss_pred             EEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-CEEEEEcCCCCEEEEEeCCCC----CEEEEEEcCCCCEEEE
Confidence            445556666555433222222211 00       0111 223344455666666655432    2344443 35554444


Q ss_pred             eCCCCeEEEEeC
Q 024436          255 SVNMPYAGLYNY  266 (268)
Q Consensus       255 s~~~~~v~~~~~  266 (268)
                      ...+..|.+.++
T Consensus       526 ~~~dg~v~lwd~  537 (577)
T 2ymu_A          526 ASDDKTVKLWNR  537 (577)
T ss_dssp             EETTSEEEEECT
T ss_pred             EECcCEEEEEeC
Confidence            445556666553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.90  E-value=6e-08  Score=84.31  Aligned_cols=137  Identities=16%  Similarity=0.255  Sum_probs=89.9

Q ss_pred             CCCcceEEECC-CCCEEEEEeC-----------------CCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEee
Q 024436           33 AIGPESLAFDA-LGEGPYTGVS-----------------DGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILS   85 (268)
Q Consensus        33 ~~~P~gia~~~-dG~~l~~~~~-----------------~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~   85 (268)
                      +..|+++++++ +|++|+++..                 +++|+++++++.....+..         ..+++.++  ++.
T Consensus       125 ~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~l--yv~  202 (322)
T 2fp8_A          125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV--LVA  202 (322)
T ss_dssp             CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEE--EEE
T ss_pred             ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEE--EEE
Confidence            45799999999 9998887643                 3889999987543333221         12222222  223


Q ss_pred             cCCcceEEEEeCCC---CeEEEeecCCCCcceEEEccCCCEEEEEecC----------CcEEEEEEccCCCCCceeEEEe
Q 024436           86 GDKTGRLMKYDPAT---KQVTVLLGNLSFPNGVALSEDGNYILLAETT----------SCRILRYWLKTSKAGTIEIVAQ  152 (268)
Q Consensus        86 ~~~~g~v~~~d~~~---~~~~~~~~~~~~pnGia~spdg~~lyva~~~----------~~~I~~~~~~~~~~g~~~~~~~  152 (268)
                      +...++|++++.++   ++.+.+.. +..|+||+++++|+ |||++..          .++|++|+.++..   ...+..
T Consensus       203 d~~~~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~---~~~~~~  277 (322)
T 2fp8_A          203 EFLSHQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI---LEVIPL  277 (322)
T ss_dssp             EGGGTEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE---EEEEEC
T ss_pred             eCCCCeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE---EEEEEC
Confidence            34567899999874   23444433 22299999999996 9999876          5789999887521   223322


Q ss_pred             CC----CCCCceEEcCCCCEEEEEecCCC
Q 024436          153 LP----GFPDNIKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       153 l~----g~Pdgia~d~dG~l~va~~~~~~  177 (268)
                      -.    ..|.+++. .+|+||++....+.
T Consensus       278 ~~g~~~~~~~~~~~-~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          278 PPPFAGEHFEQIQE-HDGLLYIGTLFHGS  305 (322)
T ss_dssp             CTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred             CCCCccccceEEEE-eCCEEEEeecCCCc
Confidence            11    24777777 47899999877663

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.88  E-value=1.4e-07  Score=83.94  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             CC-CCCcceEEECCCCCEEEEEe-------------CCCeEEEEeCCCC--eEEEEEEcC--CC----CCeeEEEee---
Q 024436           31 EG-AIGPESLAFDALGEGPYTGV-------------SDGRIIKWHQDQR--RWLHFARTS--PN----RNHISVILS---   85 (268)
Q Consensus        31 ~~-~~~P~gia~~~dG~~l~~~~-------------~~g~I~~~~~~g~--~~~~~~~~~--~~----~~~~~~~~~---   85 (268)
                      ++ ..+||.++++|+|. +|+++             .+|+|++++++..  ....+...+  .+    +++..++..   
T Consensus        46 ~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           46 KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             TTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             CCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            44 35899999999987 45554             6899999998732  233333222  11    222222211   


Q ss_pred             ----------c--CCcceEEEEeCCCCeEEEee----cCCCCcceEEEccCCCEEEEEec-----------------CCc
Q 024436           86 ----------G--DKTGRLMKYDPATKQVTVLL----GNLSFPNGVALSEDGNYILLAET-----------------TSC  132 (268)
Q Consensus        86 ----------~--~~~g~v~~~d~~~~~~~~~~----~~~~~pnGia~spdg~~lyva~~-----------------~~~  132 (268)
                                .  .....+++++++++..+.+.    ..+..||+++++++| .+|+++.                 ..+
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCcc
Confidence                      1  12234777777644433321    347789999999999 5999875                 246


Q ss_pred             EEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEEEEecCCC
Q 024436          133 RILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       133 ~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                      +|++|+..     +.+.+.+ +. .|+||++++||+ +|+++...+.
T Consensus       204 ~vyr~d~~-----~~~~~~~~l~-~pNGia~spDg~~lYvadt~~~~  244 (355)
T 3sre_A          204 FVTYYSPN-----DVRVVAEGFD-FANGINISPDGKYVYIAELLAHK  244 (355)
T ss_dssp             EEEEECTT-----CCEEEEEEES-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEEEEECC-----eEEEeecCCc-ccCcceECCCCCEEEEEeCCCCe
Confidence            88888762     2344433 43 799999999995 8999987763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.86  E-value=9.8e-07  Score=79.60  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=87.6

Q ss_pred             CcceEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~---g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ...+++++|||+.+++...+   ..|+.++..+.....+.         ..+|++.++...........|+.+|.++++.
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence            46778999999987776655   48988987543322222         1234444443222334456799999988888


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      +.+.........++|+|||++|+++....  .+|++++++++.   ...+.........+++++||+.++.
T Consensus       260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEE
Confidence            77766555678899999999888775433  389999987633   2222111223457899999985443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.82  E-value=1.8e-07  Score=82.93  Aligned_cols=64  Identities=20%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCC----CCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSK----AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~----~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ..|.|++|. +| .+||++...++|+++++++..    .+..+.+....+.|.++++++||.||++.+..
T Consensus       268 ~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~  335 (352)
T 2ism_A          268 FPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNR  335 (352)
T ss_dssp             CCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECST
T ss_pred             CCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCC
Confidence            468899994 66 599999999999999987432    11123333323689999999999999999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.81  E-value=4.6e-07  Score=82.54  Aligned_cols=147  Identities=14%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             CEEEEecCCC--CCcceEEECCCCCEEEEEe-------------------CCCeEEEEeCCCCeEEEEEEc---------
Q 024436           24 GVVQYQIEGA--IGPESLAFDALGEGPYTGV-------------------SDGRIIKWHQDQRRWLHFART---------   73 (268)
Q Consensus        24 ~~~~i~~~~~--~~P~gia~~~dG~~l~~~~-------------------~~g~I~~~~~~g~~~~~~~~~---------   73 (268)
                      -+.+++++..  ..++.+.+.|+++.+|++.                   ..++|..++.+..........         
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~  255 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE  255 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence            3455555532  2355577899999888873                   368999998765433322222         


Q ss_pred             -----CCCCCeeEEEee---cCCcceEEEEeCCCCeEEEee-----c-----C-----------CCCcceEEEccCCCEE
Q 024436           74 -----SPNRNHISVILS---GDKTGRLMKYDPATKQVTVLL-----G-----N-----------LSFPNGVALSEDGNYI  124 (268)
Q Consensus        74 -----~~~~~~~~~~~~---~~~~g~v~~~d~~~~~~~~~~-----~-----~-----------~~~pnGia~spdg~~l  124 (268)
                           .+++.+++...+   ..-.+.|+++..+.|+.+...     .     .           ...|.+|.+|+||++|
T Consensus       256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence                 334445444433   112345544333324332211     0     0           2568999999999999


Q ss_pred             EEEecCCcEEEEEEccCCCCCceeEEEe--C---------------CCCCCceEEcCCCC-EEEEE
Q 024436          125 LLAETTSCRILRYWLKTSKAGTIEIVAQ--L---------------PGFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus       125 yva~~~~~~I~~~~~~~~~~g~~~~~~~--l---------------~g~Pdgia~d~dG~-l~va~  172 (268)
                      ||+++..+.|.+|+++...  +.+....  .               .+.|+++++++||+ |||+.
T Consensus       336 YVSnrg~d~VavfdV~d~~--~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          336 YLSLWGIGEVRQYDISNPF--KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEETTTTEEEEEECSSTT--SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEeCCCCEEEEEEecCCC--CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999999999986321  2222222  1               23599999999996 78877

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.80  E-value=2e-06  Score=77.12  Aligned_cols=145  Identities=11%  Similarity=0.060  Sum_probs=86.5

Q ss_pred             CEEEEecCC------CCCcceEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEEcCC--------CCCeeEEEeecC
Q 024436           24 GVVQYQIEG------AIGPESLAFDALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSP--------NRNHISVILSGD   87 (268)
Q Consensus        24 ~~~~i~~~~------~~~P~gia~~~dG~~l~~~~~--~g~I~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~   87 (268)
                      -+.+|+++.      ...|++++++|||+.+|+.+.  ++.|..||.....+.......+        .+.|+    ...
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~----~~~  196 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF----MHC  196 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE----EEE
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeE----EEC
Confidence            456677764      247999999999999998763  6899999987654333222211        11122    223


Q ss_pred             CcceEEEEeCCC-CeEEEeecC------CCCcceEEEc-cCCCEEEEEecCCcEEEEEEccCCCCC---ceeEEEe--C-
Q 024436           88 KTGRLMKYDPAT-KQVTVLLGN------LSFPNGVALS-EDGNYILLAETTSCRILRYWLKTSKAG---TIEIVAQ--L-  153 (268)
Q Consensus        88 ~~g~v~~~d~~~-~~~~~~~~~------~~~pnGia~s-pdg~~lyva~~~~~~I~~~~~~~~~~g---~~~~~~~--l-  153 (268)
                      ++|++..++.++ +++......      ....+..+|+ +||+.+|+++  .++|++++..+....   ...++..  . 
T Consensus       197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceecccccccc
Confidence            567888888865 555221111      1122335664 7887777766  578999998754311   1111111  0 


Q ss_pred             CC-CCC---ceEEcCCC-CEEEEEec
Q 024436          154 PG-FPD---NIKRSPRG-GFWVGIHS  174 (268)
Q Consensus       154 ~g-~Pd---gia~d~dG-~l~va~~~  174 (268)
                      ++ .|.   .+++++++ ++||+...
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~  300 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQ  300 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ccccCCCcceeeECCCCCeEEEEecc
Confidence            11 243   48899887 48998763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.79  E-value=1.2e-07  Score=84.66  Aligned_cols=79  Identities=10%  Similarity=-0.018  Sum_probs=58.6

Q ss_pred             Ccce---EEEccCCCEEEEEec-C-------CcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCC-EEEEEe-cC
Q 024436          111 FPNG---VALSEDGNYILLAET-T-------SCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGG-FWVGIH-SR  175 (268)
Q Consensus       111 ~pnG---ia~spdg~~lyva~~-~-------~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~-l~va~~-~~  175 (268)
                      .|.|   ++++|||+++||+.. .       .+.+.++|++.     .+++..+  ++.|+||++++||+ +|+++. ..
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-----~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-----GQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-----CCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-----CeEEEEEECCCCcceEEECCCCCEEEEEccCCC
Confidence            4566   999999999999865 3       35677999874     2334443  34699999999996 899998 45


Q ss_pred             CCcceeeeEee-Cccceeeeecccc
Q 024436          176 RKGISKLVLSF-PWIGNVLIKLPID  199 (268)
Q Consensus       176 ~~~~~~~v~~~-~~~g~~l~~i~~~  199 (268)
                      +.     |..+ ..+++++..|+.+
T Consensus       337 ~~-----VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          337 EV-----LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TE-----EEEEESSSCEEEEECCCC
T ss_pred             Ce-----EEEEECCCCcEEEEEECC
Confidence            53     4444 5789999999876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.77  E-value=9.6e-07  Score=74.88  Aligned_cols=149  Identities=10%  Similarity=0.079  Sum_probs=95.7

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeE-EEEEEc-----CCCC-----------CeeEE
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRW-LHFART-----SPNR-----------NHISV   82 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~-~~~~~~-----~~~~-----------~~~~~   82 (268)
                      .+-++.+++++...+|||++.++|.++++.-.+++++.++  .++..+ ......     .++.           +.+..
T Consensus        58 g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A           58 GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE
Confidence            3456677788777899999999998666666678888775  344311 111111     0111           11222


Q ss_pred             EeecCCcceEEEEeC--CCCeEEEeec-------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC
Q 024436           83 ILSGDKTGRLMKYDP--ATKQVTVLLG-------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL  153 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~--~~~~~~~~~~-------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l  153 (268)
                      . .......||.++.  .+..++....       .+.-+.+|+++|.-++||+....+++|..+|.+|.    ...+..|
T Consensus       138 a-~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----~~~~~~L  212 (255)
T 3qqz_A          138 F-KEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----VIGEMSL  212 (255)
T ss_dssp             E-EESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEEC
T ss_pred             E-ECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----EEEEEEc
Confidence            1 2233447888872  2222333211       23457899999999999999999999999998763    2333333


Q ss_pred             C-C---------CCCceEEcCCCCEEEEEecC
Q 024436          154 P-G---------FPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       154 ~-g---------~Pdgia~d~dG~l~va~~~~  175 (268)
                      . |         .|.||++|++|+|||++-.+
T Consensus       213 ~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n  244 (255)
T 3qqz_A          213 TKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN  244 (255)
T ss_dssp             STTGGGCSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred             CCccCCcccccCCCCeeEECCCCCEEEEcCCc
Confidence            2 1         68999999999999997665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.73  E-value=6.5e-07  Score=79.28  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             CCcceEEEEeCCCCeEEEe-------ecCCCCcceEEEccC---CCEEEEEec--CCcEEEEEEccCC-----CCCceeE
Q 024436           87 DKTGRLMKYDPATKQVTVL-------LGNLSFPNGVALSED---GNYILLAET--TSCRILRYWLKTS-----KAGTIEI  149 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~-------~~~~~~pnGia~spd---g~~lyva~~--~~~~I~~~~~~~~-----~~g~~~~  149 (268)
                      ...|+|+++++++++.+.+       ..+...++||+++||   +++|||+.+  ..++|.||++++.     .+...++
T Consensus        50 r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~  129 (347)
T 3das_A           50 RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDT  129 (347)
T ss_dssp             TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEE
T ss_pred             ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEE
Confidence            4579999999876665433       234567899999996   457999754  5679999998762     3334444


Q ss_pred             E-EeCCC----CCCceEEcCCCCEEEEEecCC
Q 024436          150 V-AQLPG----FPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       150 ~-~~l~g----~Pdgia~d~dG~l~va~~~~~  176 (268)
                      + ..+|.    .+..|++++||+||++.....
T Consensus       130 i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~  161 (347)
T 3das_A          130 VFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG  161 (347)
T ss_dssp             EEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred             EEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence            3 33442    456799999999999986543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.70  E-value=2.8e-05  Score=66.18  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW---LHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~---~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      ....+++++|+|+.++++..++.|..++.+....   ..+..         ..++++++.   ....++.|..+|..+++
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF---SCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEE---EEETTSCEEEEETTTTE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEE---EEeCCCcEEEEeCCCCc
Confidence            4578899999999999999999999998765421   11111         122222222   23456789999988776


Q ss_pred             EEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          102 VTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 ~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..... ........++++||++.|+++ +..+.|..|++..+.   .......++.+..++++++|+++++....+
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE---EEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCc---eEeeecCCCceEEEEECCCCCEEEEEcCCC
Confidence            55444 344567899999999866654 567899999987532   111122344577899999998766665544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.69  E-value=3.8e-05  Score=65.48  Aligned_cols=140  Identities=15%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      +......+++++|+|++++++..++.|..|+.. ++....+.         ...++.+++.   ....++.|..+|.+++
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV---SASDDKTLKIWDVSSG   97 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSEEEEEETTTC
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEE---EECCCCEEEEEECCCC
Confidence            334567899999999999999999999999864 33222221         1123333322   3345678888888776


Q ss_pred             eEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +.. .+.......+.++|+|+++.| ++....+.|..|++..+.  ....+..-......++++++|+++++....+
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            644 344444556789999999855 455677899999987432  1122211122345789999998776665554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.68  E-value=1.2e-06  Score=75.57  Aligned_cols=77  Identities=19%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             CcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCCCcceeeeEee-C
Q 024436          111 FPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSF-P  187 (268)
Q Consensus       111 ~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~-~  187 (268)
                      .+.+++++| ||++||++   .++|++|+++.++   .......+..|.++++++||+ ||++. ..+ .    |..+ .
T Consensus       256 ~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~-~----v~v~d~  323 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRK---LIKAANLDHTYYCVAFDKKGDKLYLGG-TFN-D----LAVFNP  323 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE---ESEEEEEETTTTE---EEEEEECSSCCCEEEECSSSSCEEEES-BSS-E----EEEEET
T ss_pred             cceeeEecCCCCCEEEEE---cCeEEEEECccCe---EEEEEcCCCCccceEECCCCCEEEEec-CCC-e----EEEEec
Confidence            355677779 99999998   5799999987522   212222445689999999985 77753 222 2    3333 3


Q ss_pred             ccceeeeecccc
Q 024436          188 WIGNVLIKLPID  199 (268)
Q Consensus       188 ~~g~~l~~i~~~  199 (268)
                      .+++.+..++.+
T Consensus       324 ~~~~~~~~~~~~  335 (349)
T 1jmx_B          324 DTLEKVKNIKLP  335 (349)
T ss_dssp             TTTEEEEEEECS
T ss_pred             cccceeeeeecC
Confidence            456667666654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.67  E-value=7.7e-06  Score=68.10  Aligned_cols=134  Identities=11%  Similarity=0.028  Sum_probs=84.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEE-----------cCCCCCeeEEEee-cCCcceEEEEeCCCCe
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFAR-----------TSPNRNHISVILS-GDKTGRLMKYDPATKQ  101 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~-----------~~~~~~~~~~~~~-~~~~g~v~~~d~~~~~  101 (268)
                      ...+++++|||+.+++.. ++.|+.++.++ ........           .++++.++..... ......|+.++.++++
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence            678999999999877765 78999998765 32222211           1233333332211 2246789999988776


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEe
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~  173 (268)
                      .+.+... ...+.++|+|||+.|+++....+  +|+.++.+++   ....+...++.+..++++++|+ ++++..
T Consensus       122 ~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          122 PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEec
Confidence            6655433 34788999999998887665556  4555555432   2222222334567899999998 444443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.64  E-value=2.5e-06  Score=76.90  Aligned_cols=137  Identities=10%  Similarity=0.083  Sum_probs=88.1

Q ss_pred             CcceEEECCCCCEEE-EEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPY-TGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~-~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ...+++++|||+.++ +...+  ..|+.++.++.....+.         ..+|++.++...........|+.+|.++++.
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            567899999999666 55444  45998987654322211         1234444443222223344899999988877


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEecC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIHSR  175 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~~~  175 (268)
                      +.+.........++|+|||++|+++...  ...|++|+++++.   ...+... .....+++.|||+. +.+....
T Consensus       304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~-~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST-FLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS-SSCEEEEECTTSSEEEEEEEET
T ss_pred             EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC-CCcCCeEEcCCCCEEEEEEcCC
Confidence            6665554566789999999999887764  4689999987532   2222221 24678899999984 4444433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.60  E-value=8.9e-07  Score=78.52  Aligned_cols=64  Identities=9%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             CCcceEEEcc-------CCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEec
Q 024436          110 SFPNGVALSE-------DGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       110 ~~pnGia~sp-------dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~~  174 (268)
                      ..|.|++|.+       +| .+||++...++|++++++++.....+.+. ...+.|.++++++||.||++...
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~  342 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDE  342 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECS
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeC
Confidence            3688999975       45 69999999999999999853211112222 22357999999999999998653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.60  E-value=5.3e-05  Score=65.55  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE---------EcCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA---------RTSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+..+. .....++++|+|+.++++..++.|..++.... ....+.         ..++++.++.   .+..++.|.
T Consensus       114 ~~~~~~~~~-~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la---sg~~dg~i~  189 (321)
T 3ow8_A          114 QIKSIDAGP-VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA---SGAIDGIIN  189 (321)
T ss_dssp             EEEEEECCT-TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE---EEETTSCEE
T ss_pred             EEEEEeCCC-ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE---EEcCCCeEE
Confidence            445554442 35678999999999999999999998886532 211111         1233444332   334567888


Q ss_pred             EEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEE
Q 024436           94 KYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~  172 (268)
                      .+|..+++......+ ....+.++|+||+++| ++.+..+.|..|++.....  ...+..-.+....+++.|+|+++++.
T Consensus       190 iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~  266 (321)
T 3ow8_A          190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSS  266 (321)
T ss_dssp             EEETTTTEEEEEECCCSSCCCEEEECTTSCEE-EEECTTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEEEEEcccCCceeEEEEcCCCCEE-EEEcCCCeEEEEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEE
Confidence            999887776544443 3445899999999855 5666788999999874321  12221112345678999999877766


Q ss_pred             ecCC
Q 024436          173 HSRR  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ...+
T Consensus       267 s~D~  270 (321)
T 3ow8_A          267 SSDK  270 (321)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            6554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=4.6e-06  Score=70.72  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEE-EeCCCeEEEEeCCC-CeEEEEEEcC------CCCCeeEEEeecCCcceEEE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQ-RRWLHFARTS------PNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g-~~~~~~~~~~------~~~~~~~~~~~~~~~g~v~~   94 (268)
                      +-++.++++.-...+|++++  |+.+|. ...+++++.+|++. +....+....      .++..+  +.+ +..++|+.
T Consensus        76 kv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L--~~S-dGs~~i~~  150 (262)
T 3nol_A           76 KTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYL--IMS-DGTPVLRF  150 (262)
T ss_dssp             CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCE--EEC-CSSSEEEE
T ss_pred             cEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEE--EEE-CCCCeEEE
Confidence            34566777753334667765  444555 45689999999864 3333333211      111111  223 34688999


Q ss_pred             EeCCCCeEEEee------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-------------C
Q 024436           95 YDPATKQVTVLL------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-------------G  155 (268)
Q Consensus        95 ~d~~~~~~~~~~------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-------------g  155 (268)
                      +||++.++..-.      ..+..+|.+.+. || .||++...++.|.++|++.++   .....+++             .
T Consensus       151 iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~---V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          151 LDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGK---VTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             ECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCB---EEEEEECTTGGGGSCSCCSSCC
T ss_pred             EcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCc---EEEEEECCcCccccccccCcCC
Confidence            999987654321      134667889987 77 699999999999999987543   22222221             2


Q ss_pred             CCCceEEcCCC-CEEEEEe
Q 024436          156 FPDNIKRSPRG-GFWVGIH  173 (268)
Q Consensus       156 ~Pdgia~d~dG-~l~va~~  173 (268)
                      .|+|||+|+++ +|||+.-
T Consensus       226 vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEECC
Confidence            68999999987 5888774

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.59  E-value=5.3e-05  Score=65.23  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..+|.|..|+.. ++....+.         ...+++.++.   ....++.|..+|..+++..
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV---TGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTTEEEEEETTTCCEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEE---EEeCCCeEEEEECCCCcEE
Confidence            468899999999999999999999999864 33322221         1123333332   3345688999998877766


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCC-----cEEEEEEccCCCC-Ccee--------EEEeCCC--CCCceEEcCCCC
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTS-----CRILRYWLKTSKA-GTIE--------IVAQLPG--FPDNIKRSPRGG  167 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~-----~~I~~~~~~~~~~-g~~~--------~~~~l~g--~Pdgia~d~dG~  167 (268)
                      ...........++|+|+++.|+++. ..     +.|..|++..... ....        .+....+  ....++++++|+
T Consensus       110 ~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (369)
T 3zwl_B          110 ATWKSPVPVKRVEFSPCGNYFLAIL-DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK  188 (369)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEE-CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred             EEeecCCCeEEEEEccCCCEEEEec-CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence            5555556678999999999776654 44     7899999874321 1111        1111112  466788999998


Q ss_pred             EEEEEecCC
Q 024436          168 FWVGIHSRR  176 (268)
Q Consensus       168 l~va~~~~~  176 (268)
                      ++++....+
T Consensus       189 ~l~~~~~dg  197 (369)
T 3zwl_B          189 YIIAGHKDG  197 (369)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEcCCC
Confidence            666655544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.57  E-value=3.5e-05  Score=67.60  Aligned_cols=141  Identities=12%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             CCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCC
Q 024436           33 AIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        33 ~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      .....++++.| +++.++++..++.|..|+..+.....+...            .++..++   .....++.|..+|...
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~~i~i~d~~~  194 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQML---ATGDSTGRLLLLGLDG  194 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEE---EEEETTSEEEEEETTS
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEE---EEECCCCCEEEEECCC
Confidence            34678999999 788899999999999999887644333221            1222222   2334568888898875


Q ss_pred             CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC-CceeEEEeCCCCCCceEEcC-CCCEEEEEecCC
Q 024436          100 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSP-RGGFWVGIHSRR  176 (268)
Q Consensus       100 ~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~-g~~~~~~~l~g~Pdgia~d~-dG~l~va~~~~~  176 (268)
                      ..+..+.......+.++|+|+++.++++.+..+.|..|++..... +.........+....+++++ +|+++++....+
T Consensus       195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~  273 (383)
T 3ei3_B          195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN  273 (383)
T ss_dssp             CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred             CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC
Confidence            555566656667889999999984556667789999999974221 11211112234577899999 998766665544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.57  E-value=5.2e-05  Score=72.63  Aligned_cols=133  Identities=12%  Similarity=0.054  Sum_probs=87.3

Q ss_pred             CCcceEEECCCCCEEEEEeC-CC-----eEEEEeCCCCeEEEEEE----------------------------------c
Q 024436           34 IGPESLAFDALGEGPYTGVS-DG-----RIIKWHQDQRRWLHFAR----------------------------------T   73 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~-~g-----~I~~~~~~g~~~~~~~~----------------------------------~   73 (268)
                      ..+..++++|||+.+++... ++     .|+.++.++........                                  .
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            35889999999998887776 77     89999976543222211                                  1


Q ss_pred             CCCCCeeEEEeecCCcceEEEEeCCCC---eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE
Q 024436           74 SPNRNHISVILSGDKTGRLMKYDPATK---QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        74 ~~~~~~~~~~~~~~~~g~v~~~d~~~~---~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~  150 (268)
                      +|++.++... .   .+.|+.+|.+++   +.+.+.......+.++|||||++|+++.  .+.|+.|+++++.   ...+
T Consensus       117 SpDg~~l~~~-~---~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~---~~~~  187 (741)
T 2ecf_A          117 SPDAQRLLFP-L---GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGR---QMQL  187 (741)
T ss_dssp             CTTSSEEEEE-E---TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTE---EEEC
T ss_pred             CCCCCEEEEE-e---CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCC---EEEe
Confidence            2333333211 1   178999999877   6666665556678999999999887765  3589999987532   2211


Q ss_pred             EeCCC-----------------CCCceEEcCCCC-EEEEEecC
Q 024436          151 AQLPG-----------------FPDNIKRSPRGG-FWVGIHSR  175 (268)
Q Consensus       151 ~~l~g-----------------~Pdgia~d~dG~-l~va~~~~  175 (268)
                      .....                 .+.+++++|||+ |+++....
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            11111                 157899999997 66655443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.56  E-value=4e-05  Score=66.39  Aligned_cols=139  Identities=6%  Similarity=-0.010  Sum_probs=87.0

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      ....+++++|+|++++++..++.|..++.++..   ...+...         .++..++.   ....++.|..+|..+++
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV---TCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE---EEETTSCEEEEEEETTE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEE---EEcCCCeEEEEECCCCe
Confidence            357899999999999998889999999876542   2222111         12223322   22345667777766665


Q ss_pred             EEEe---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEe-CCCCCCceEEcCCCCEEEEEecCC
Q 024436          102 VTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 ~~~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ....   .......+.++|+||++.|+++. ..+.|..|+++...... ...+.. .......+++.++|+++++....+
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            4332   33445578999999998776554 66888888887532100 111111 123467899999998776665544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.55  E-value=2.1e-05  Score=67.41  Aligned_cols=197  Identities=14%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-C-Cee---EEEeecCCcceEEEEeCCCCeEE-EeecCCCCc
Q 024436           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-R-NHI---SVILSGDKTGRLMKYDPATKQVT-VLLGNLSFP  112 (268)
Q Consensus        39 ia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~-~~~---~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p  112 (268)
                      .++. +|. ++++..++.|++++++|+.........+. . ...   ..+......+.|+++|++ ++.. .........
T Consensus       103 ~~~~-~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~  179 (330)
T 3hxj_A          103 FTIF-EDI-LYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT  179 (330)
T ss_dssp             EEEE-TTE-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC
T ss_pred             ceEE-CCE-EEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce
Confidence            3444 555 77777789999999886532222111110 0 000   011122345789999998 6543 233233455


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eC-CCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccc
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QL-PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIG  190 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l-~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g  190 (268)
                      ..++++++|+ ||++.   +.|++++.++.     ..+. .. ......+++|++|++|++...++      +.++.+++
T Consensus       180 ~~~~~d~~g~-l~v~t---~~l~~~d~~g~-----~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~g------l~~~~~~g  244 (330)
T 3hxj_A          180 SAASIGKDGT-IYFGS---DKVYAINPDGT-----EKWNFYAGYWTVTRPAISEDGTIYVTSLDGH------LYAINPDG  244 (330)
T ss_dssp             SCCEECTTCC-EEEES---SSEEEECTTSC-----EEEEECCSSCCCSCCEECTTSCEEEEETTTE------EEEECTTS
T ss_pred             eeeEEcCCCE-EEEEe---CEEEEECCCCc-----EEEEEccCCcceeceEECCCCeEEEEcCCCe------EEEECCCC
Confidence            6788888885 88886   78999984331     1221 12 23577899999999999987554      55566677


Q ss_pred             eeeeeccccceeeee--------eccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE-eCCEEEEeeCCCC
Q 024436          191 NVLIKLPIDIVKIHS--------SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE-KDGNLWIGSVNMP  259 (268)
Q Consensus       191 ~~l~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~-~~g~Lyv~s~~~~  259 (268)
                      +.+...+.+......        ++- .+.. +-+.+++++|+.+..+..+. ..   +..+.. .+|+||+++..+-
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-ggl~~~d~~g~~~~~~~~~~-~~---~~~~~~d~~g~l~~gt~~G~  316 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTDTIYF-GSYD-GHLYAINPDGTEKWNFETGS-WI---IATPVIDENGTIYFGTRNGK  316 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSCEEE-ECTT-CEEEEECTTSCEEEEEECSS-CC---CSCCEECTTCCEEEECTTSC
T ss_pred             CEeEEeeCCCCccccceEcCCCeEEE-ecCC-CCEEEECCCCcEEEEEEcCC-cc---ccceEEcCCCEEEEEcCCCe
Confidence            766555433111110        111 1222 45778888888887776542 11   223333 7899999887653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.55  E-value=1.1e-05  Score=75.87  Aligned_cols=139  Identities=9%  Similarity=0.068  Sum_probs=84.6

Q ss_pred             EEECC-----CCCEEEEEe-CCCeEEEEeCCCCeEEEE------------EEcC-CCCCeeEEEe---------------
Q 024436           39 LAFDA-----LGEGPYTGV-SDGRIIKWHQDQRRWLHF------------ARTS-PNRNHISVIL---------------   84 (268)
Q Consensus        39 ia~~~-----dG~~l~~~~-~~g~I~~~~~~g~~~~~~------------~~~~-~~~~~~~~~~---------------   84 (268)
                      ++++.     ||+.+|+.. .+++|.+|+.+.......            +... |+..|+....               
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            77777     888888755 478999999876432221            1112 3333433221               


Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC--------------cEEEEEEccC-------CC
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--------------CRILRYWLKT-------SK  143 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~--------------~~I~~~~~~~-------~~  143 (268)
                      .....+.+..+|.++.++.....-...|.+++++|||+++|++...+              ..|.++++..       ++
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            01234578899999877654332222799999999999999999776              3455544321       00


Q ss_pred             ---CCce----------eE-EEe--CCCCCCceEEcCCCC-EEEEEecCCC
Q 024436          144 ---AGTI----------EI-VAQ--LPGFPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       144 ---~g~~----------~~-~~~--l~g~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                         .+..          .. ...  .+..|.|+.++|||+ +|++......
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe
Confidence               0000          11 111  224699999999997 6666666653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.53  E-value=6.7e-05  Score=63.78  Aligned_cols=136  Identities=13%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~-~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+++.++++..++.|..++...... ..+..         ..++++++.   .....+.|..+|..+++..
T Consensus       142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW---TGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE---EEETTSEEEEEETTTTEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE---EEecCCcEEEEECCCCceE
Confidence            3467899999999999999999999998764422 22211         122223222   3345688999998877766


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ...........++++||++.|+++ ...+.|..|++....   ...+....+....++++++|+++++....+
T Consensus       219 ~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          219 QQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeecCCCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence            555555567899999999977655 467889999987532   222222234577899999999777665554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.51  E-value=0.00012  Score=64.09  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=91.9

Q ss_pred             cCCCCCcceEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEEc-CCCCC-----e----eEEEeecCCcceEEEEeCC
Q 024436           30 IEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFART-SPNRN-----H----ISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~g~~~~~~~~~-~~~~~-----~----~~~~~~~~~~g~v~~~d~~   98 (268)
                      .+.-....+++++|+| ++++++..++.|..|+.++......... +....     |    ...++....++.|..+|..
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            3334578899999999 8999999999999998764322222111 01100     0    1122334456788888888


Q ss_pred             CCeEEEeecCC---CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEec
Q 024436           99 TKQVTVLLGNL---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~~~~~---~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~  174 (268)
                      +..+..+....   .....++|+||++.|+ +....+.|..|++.+.   ....+..-.+....++++++|+ ++++...
T Consensus       150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLA-TGDSTGRLLLLGLDGH---EIFKEKLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             SCEEEEEECCCCSSCCEEEEEEETTTTEEE-EEETTSEEEEEETTSC---EEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCceEEEeccCCCCCCeEEEEECCCCCEEE-EECCCCCEEEEECCCC---EEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence            66565554433   4467999999998665 5557789999998642   1222322234567899999998 7666655


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       226 d~  227 (383)
T 3ei3_B          226 DA  227 (383)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.50  E-value=0.0004  Score=61.08  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=55.0

Q ss_pred             CcceEEEEeCCCCeEEEee--------cCCCCcceEEEccCCCEEEEEec-CCcEEEEEEccCCCCCceeEEEeCCCCCC
Q 024436           88 KTGRLMKYDPATKQVTVLL--------GNLSFPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQLPGFPD  158 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~--------~~~~~pnGia~spdg~~lyva~~-~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd  158 (268)
                      ..-++|.++...+.++.+.        ..-.+.+.++|||||++|.++.. ..+.|..|++....  ....+ .-.+...
T Consensus       104 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--~~~~~-~~~~~V~  180 (365)
T 4h5i_A          104 KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--EKFEI-ETRGEVK  180 (365)
T ss_dssp             CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--EEEEE-ECSSCCC
T ss_pred             CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--EEEEe-CCCCceE
Confidence            3446777777655544331        11234567999999998877654 45789999987522  11111 2234567


Q ss_pred             ceEEcCCCCEEEEEecCC
Q 024436          159 NIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~  176 (268)
                      .+++.|||+++++.....
T Consensus       181 ~v~fspdg~~l~s~s~~~  198 (365)
T 4h5i_A          181 DLHFSTDGKVVAYITGSS  198 (365)
T ss_dssp             EEEECTTSSEEEEECSSC
T ss_pred             EEEEccCCceEEecccee
Confidence            899999999887776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.49  E-value=4e-05  Score=67.86  Aligned_cols=151  Identities=11%  Similarity=0.117  Sum_probs=98.0

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCC---------eEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---------RWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      ..+++++|+|+.++++..++.|..++....         .........+++.++.   .+...+.|..+|..+++.....
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFI---LGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEE---EEETTSCEEEECTTSCEEEEET
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEE---EEECCCCEEEEeCCCcceeeec
Confidence            458999999999999999999999986532         1122222233433322   3345678888998877766554


Q ss_pred             -cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEe
Q 024436          107 -GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLS  185 (268)
Q Consensus       107 -~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~  185 (268)
                       ......+.++|+||++.|+ +-+..+.|..|++..+..  ...+..-.+....+++.++|+++++....+.     |..
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-----v~i  207 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNVLSASLDGT-----IRL  207 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCC--CEEEECCSSCEEEEEEETTTTEEEEEETTSC-----EEE
T ss_pred             ccccCccEEEEECCCCCEEE-EEeCCCeEEEEeCCCCcC--ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc-----EEE
Confidence             4455668999999998665 556778999999975321  2333322344678999999987666555442     333


Q ss_pred             eC-ccceeeeecc
Q 024436          186 FP-WIGNVLIKLP  197 (268)
Q Consensus       186 ~~-~~g~~l~~i~  197 (268)
                      +. ..++.+..+.
T Consensus       208 wd~~~~~~~~~~~  220 (420)
T 3vl1_A          208 WECGTGTTIHTFN  220 (420)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             eECCCCceeEEee
Confidence            32 4455555544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.48  E-value=3.5e-05  Score=72.92  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             CCCCCE-EEEEe-CCCeEEEEeCC----CCeEEEE--------------EEcCCCCCeeEEEeec-------CCcceEEE
Q 024436           42 DALGEG-PYTGV-SDGRIIKWHQD----QRRWLHF--------------ARTSPNRNHISVILSG-------DKTGRLMK   94 (268)
Q Consensus        42 ~~dG~~-l~~~~-~~g~I~~~~~~----g~~~~~~--------------~~~~~~~~~~~~~~~~-------~~~g~v~~   94 (268)
                      +|||+. ++... .+.+|+.++.+    +.. ..+              ...++++.++.-....       .....|+.
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence            399986 55443 47889999877    431 111              1123455444322222       22358999


Q ss_pred             EeCCC------CeEEEee-cCCCCcceEEEccCCCEEEEEecCC-------cEEEEEEccC-CCCCceeEEEe-CCCCCC
Q 024436           95 YDPAT------KQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-------CRILRYWLKT-SKAGTIEIVAQ-LPGFPD  158 (268)
Q Consensus        95 ~d~~~------~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~-------~~I~~~~~~~-~~~g~~~~~~~-l~g~Pd  158 (268)
                      +|.++      ++.+.+. .+......++|||||++|+++....       ..|+.+++++ +..+....+.. ..+.+.
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            99987      7777776 6556677899999999998776433       5899999983 32212333332 234567


Q ss_pred             ceEEcCCCCEEEEEecC
Q 024436          159 NIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       159 gia~d~dG~l~va~~~~  175 (268)
                      .+++.+||++++.....
T Consensus       246 ~~~~spdg~l~~~~~~~  262 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRT  262 (662)
T ss_dssp             EEEECTTSCEEEEECTT
T ss_pred             ceEECCCCeEEEEECCC
Confidence            78999999976655443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.47  E-value=0.00026  Score=61.11  Aligned_cols=138  Identities=16%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ...-.++++.+++.+++++..|+.|..|+.... ....+..         ..+++.++   ..+...+.+..++.++++.
T Consensus        80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l---~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL---ATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEE---EEECTTSEEEEEETTTCSE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEE---EEEcCCCcEEEEEcCCCce
Confidence            345678899999999999999999999997543 2222211         12233332   2345667888888876654


Q ss_pred             EE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          103 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       103 ~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .. +.........++|+|||++|+ +....+.|..|++..++.  ...+..-......++++++|+++++....+
T Consensus       157 ~~~~~~~~~~v~~~~~spdg~~la-sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          157 EYSLDTRGKFILSIAYSPDGKYLA-SGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred             eEEecCCCceEEEEEECCCCCEEE-EEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence            43 334445568999999998665 555778999999874321  112211123357899999999877766554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.47  E-value=1.1e-05  Score=67.16  Aligned_cols=139  Identities=13%  Similarity=0.005  Sum_probs=86.4

Q ss_pred             CcceEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPY-TGVSDG--RIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~-~~~~~g--~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ....++++|||+.++ +...++  +|+.++.++.....+.         ..++++.++...........||.++.++++.
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~  209 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV  209 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred             CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence            467789999999766 555666  5666666543222211         1234444443222234567899999776777


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecC----------CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEE
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETT----------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVG  171 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~----------~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va  171 (268)
                      ..+.........++|+|||++|+++...          ..+|+.|++++++......+....+....++++++|+. +++
T Consensus       210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEE
T ss_pred             EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEE
Confidence            7666554556789999999988776543          26799999986432111111122345778999999984 444


Q ss_pred             Ee
Q 024436          172 IH  173 (268)
Q Consensus       172 ~~  173 (268)
                      ..
T Consensus       290 ~~  291 (297)
T 2ojh_A          290 RY  291 (297)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.47  E-value=6.8e-06  Score=76.85  Aligned_cols=139  Identities=14%  Similarity=0.056  Sum_probs=86.1

Q ss_pred             CcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEE-------cCCCCCeeEEEeec-CCcceEEEEeCCCCeEEEe
Q 024436           35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFAR-------TSPNRNHISVILSG-DKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        35 ~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~-~~~g~v~~~d~~~~~~~~~  105 (268)
                      +....+++|||+ ++++...++.+..++.++.....+..       .+|++.++...... .....|+.+|.++++.+.+
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l  190 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  190 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence            455668888886 35555555555566765443222221       12344443322221 2336799999988888887


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEeCCCCCCceE--------EcCCCCEEEEEecCC
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQLPGFPDNIK--------RSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia--------~d~dG~l~va~~~~~  176 (268)
                      .......+.++|||||+.|+.++... .+|++|+++++.   ...+....+.+.+++        +++||.++++....+
T Consensus       191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            76666678999999999999655433 389999998643   232211222344566        999998877766554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=1.4e-05  Score=67.04  Aligned_cols=142  Identities=15%  Similarity=0.087  Sum_probs=89.1

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcC------CCCCeeEEEeecCCcceEEEE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTS------PNRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~------~~~~~~~~~~~~~~~g~v~~~   95 (268)
                      +-++.++++.-...+|+++. ++++|.....+++++.+|++.-. ...+....      .++..+  +.+ +..++|+.+
T Consensus        54 kv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L--~vS-dgs~~l~~i  129 (243)
T 3mbr_X           54 RILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHL--YMS-DGTAVIRKL  129 (243)
T ss_dssp             CEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCE--EEE-CSSSEEEEE
T ss_pred             CEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEE--EEE-CCCCeEEEE
Confidence            45566777763445666665 24444455568999999986533 23332111      111111  223 357899999


Q ss_pred             eCCCCeEEEee----c--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---C----------C-C
Q 024436           96 DPATKQVTVLL----G--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---L----------P-G  155 (268)
Q Consensus        96 d~~~~~~~~~~----~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l----------~-g  155 (268)
                      ||++.++..-.    .  .+.+.|.+.+. +| .||++...++.|.++|+..++   .....+   +          . .
T Consensus       130 Dp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~---V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          130 DPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGK---VVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             CTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCB---EEEEEECGGGSTTTTSCCCTTSS
T ss_pred             eCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCC---EEEEEECCcCccccccccCCcCC
Confidence            99987654322    1  24567888876 66 599999899999999997543   222222   1          0 2


Q ss_pred             CCCceEEcCCC-CEEEEEe
Q 024436          156 FPDNIKRSPRG-GFWVGIH  173 (268)
Q Consensus       156 ~Pdgia~d~dG-~l~va~~  173 (268)
                      .|+|||.|+++ +|||+.-
T Consensus       205 vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEECC
Confidence            67999999976 5888763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.44  E-value=0.00014  Score=62.07  Aligned_cols=138  Identities=13%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..-.+++|+|+|++++++..||.|..|+..... ...+...         .++++++   ..+..++.|..+|..+++..
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI---IVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE---EEEETTSEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE---EEECCCCEEEEEECCCCcEE
Confidence            468899999999999999999999999976442 2222111         1112222   23345678888888877654


Q ss_pred             -EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC-CCCEEEEEecCC
Q 024436          104 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGFWVGIHSRR  176 (268)
Q Consensus       104 -~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~-dG~l~va~~~~~  176 (268)
                       .+...-..-+.++|+|++++| ++.+..+.|..|++..+.. ....+..-......++++| +++++++....+
T Consensus        91 ~~~~~h~~~v~~~~~~~~~~~l-~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           91 VDFEAHPDYIRSIAVHPTKPYV-LSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             EEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             EEEeCCCCcEEEEEEcCCCCEE-EEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence             344445567899999999855 5667889999999874310 0111211122356788888 567666555444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.44  E-value=3.8e-05  Score=73.23  Aligned_cols=83  Identities=18%  Similarity=0.184  Sum_probs=54.4

Q ss_pred             CcceEEEEeCCCCeEEEeecC---CCCcceEEEccCCCEEEEEecCC----cEEEEEEccCCCCCceeEEE-e-CCC---
Q 024436           88 KTGRLMKYDPATKQVTVLLGN---LSFPNGVALSEDGNYILLAETTS----CRILRYWLKTSKAGTIEIVA-Q-LPG---  155 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~---~~~pnGia~spdg~~lyva~~~~----~~I~~~~~~~~~~g~~~~~~-~-l~g---  155 (268)
                      ....|+.+|.++++.+.+...   ...+..++|+|||++|+++....    ..|+.|+++++.  ....+. . ...   
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVE  310 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeEC
Confidence            446899999998877665422   23467899999999898865433    488999987531  122222 1 111   


Q ss_pred             CCCceEEcC--CCCEEEEE
Q 024436          156 FPDNIKRSP--RGGFWVGI  172 (268)
Q Consensus       156 ~Pdgia~d~--dG~l~va~  172 (268)
                      ....+++.+  ||+++++.
T Consensus       311 ~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEE
T ss_pred             ccCCceeecCCCCEEEEEE
Confidence            236789999  99854444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=6.5e-05  Score=72.99  Aligned_cols=217  Identities=17%  Similarity=0.180  Sum_probs=121.8

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc-CCCCCeeEEEeec--------CCcceEEEEeCCCCeEEEe
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART-SPNRNHISVILSG--------DKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~--------~~~g~v~~~d~~~~~~~~~  105 (268)
                      ...+++.+++|+ ++++..++.|.+++++...+..+... +.....+..+..+        ...+.|+++++++++.+..
T Consensus       364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred             ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence            456788899999 55666667788888765433222100 0001112222111        2236799999987877765


Q ss_pred             ecC---CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC------CCCCCceEEcCCCCEEEEEecCC
Q 024436          106 LGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL------PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~---~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l------~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ...   ......|+.+++| .||++..  +.|++|+.+++.   ...+...      ...+..|+.|++|+||++....+
T Consensus       443 ~~~~~~~~~v~~i~~d~~g-~lwigt~--~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNK-KIWIGTH--AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTS-EEEEEET--TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             ccCCCCCCeEEEEEECCCC-CEEEEEC--CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            431   2345678888888 5998865  679999987533   2223221      12456789999999999997554


Q ss_pred             CcceeeeEeeCccceeeeeccc----cceeeeeeccc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEE
Q 024436          177 KGISKLVLSFPWIGNVLIKLPI----DIVKIHSSLVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVE  245 (268)
Q Consensus       177 ~~~~~~v~~~~~~g~~l~~i~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~  245 (268)
                            +.++.+..+....+..    +...+.+++..       .+.. |.+.+++++.+....+...+|-.-..+..+.
T Consensus       517 ------l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~-Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~  589 (781)
T 3v9f_A          517 ------VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGE-GLVCFPSARNFDYQVFQRKEGLPNTHIRAIS  589 (781)
T ss_dssp             ------EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETT-EEEEESCTTTCCCEEECGGGTCSCCCCCEEE
T ss_pred             ------EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECC-CceEEECCCCCcEEEccccCCCCCceEEEEE
Confidence                  5555544333332221    11112222110       1122 5446677765445555544442222344454


Q ss_pred             E-eCCEEEEeeCCCCeEEEEeCC
Q 024436          246 E-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       246 ~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      . .+|+||+++.  +.|.+++.+
T Consensus       590 ~d~~g~lW~~t~--~Gl~~~~~~  610 (781)
T 3v9f_A          590 EDKNGNIWASTN--TGISCYITS  610 (781)
T ss_dssp             ECSSSCEEEECS--SCEEEEETT
T ss_pred             ECCCCCEEEEcC--CceEEEECC
Confidence            4 4789999984  457777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.43  E-value=0.00056  Score=58.67  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=93.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEE--------EcCCCCCeeEEEeec--CCcceE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFA--------RTSPNRNHISVILSG--DKTGRL   92 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~--------~~~~~~~~~~~~~~~--~~~g~v   92 (268)
                      .+..+.-. .....+++++|+++.++++..++.|..|+... +....+.        ...++..++......  ...+.|
T Consensus        66 ~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           66 RLGTLDGH-TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            44444322 34578999999999999999999999998754 3222221        112333333221110  112566


Q ss_pred             EEEeCCCCe------------EEEeecC--CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCC
Q 024436           93 MKYDPATKQ------------VTVLLGN--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD  158 (268)
Q Consensus        93 ~~~d~~~~~------------~~~~~~~--~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd  158 (268)
                      ..+|..+++            ...+...  ......++++|+++.|+++ ...+.|..|++.... .....+....+...
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNY-EYVDSIDLHEKSIS  222 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTT-EEEEEEECCSSCEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCc-EeEEEEecCCCcee
Confidence            666554321            1111111  1267889999999877655 567899999987421 11122222234567


Q ss_pred             ceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeecc
Q 024436          159 NIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  197 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~  197 (268)
                      .++++++|+++++....+.     |..+. ..++.+..+.
T Consensus       223 ~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          223 DMQFSPDLTYFITSSRDTN-----SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEECTTSSEEEEEETTSE-----EEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEecCCce-----EEEEECCCCceeeeec
Confidence            8999999987666655442     33332 4455555444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.41  E-value=0.00025  Score=65.62  Aligned_cols=164  Identities=19%  Similarity=0.240  Sum_probs=99.8

Q ss_pred             CEEEEecCCCCC-cceEEECC--CCCEEEEEeCCCeEEEEeCC-C--------CeEEEEE---------EcCCCCCeeEE
Q 024436           24 GVVQYQIEGAIG-PESLAFDA--LGEGPYTGVSDGRIIKWHQD-Q--------RRWLHFA---------RTSPNRNHISV   82 (268)
Q Consensus        24 ~~~~i~~~~~~~-P~gia~~~--dG~~l~~~~~~g~I~~~~~~-g--------~~~~~~~---------~~~~~~~~~~~   82 (268)
                      .+..+.-.. .. ..+++++|  +|++++++..+|.|..|+.. +        +....+.         ..++++.++..
T Consensus        55 ~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           55 PVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             SEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEecCC-CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            444444332 34 68999999  99999999999999988863 2        1111111         11233333322


Q ss_pred             Eeec-CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC---CCC
Q 024436           83 ILSG-DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPD  158 (268)
Q Consensus        83 ~~~~-~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g---~Pd  158 (268)
                      ...+ ...+.|+.+|.. .....+.......+.++|+|+++.++++....+.|..|++....  ....+....+   ...
T Consensus       134 ~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVR  210 (615)
T ss_dssp             EECCSSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEE
T ss_pred             eccCCCCccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEE
Confidence            2111 123788888844 44555555556678999999998666777788999999976421  1111211122   345


Q ss_pred             ceEEcCC-CCEEEEEecCCCcceeeeEeeC-ccceeeeec
Q 024436          159 NIKRSPR-GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL  196 (268)
Q Consensus       159 gia~d~d-G~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i  196 (268)
                      .+++.++ |+++++....+.     |..+. ..++.+..+
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRK-----ISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCC-----EEEEETTTCCEEEEC
T ss_pred             EEEECCCCCCEEEEEeCCCe-----EEEEECCCCCEeEEe
Confidence            7899999 987666555442     44443 456666666

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.40  E-value=0.00045  Score=59.39  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------cCCCCCe---eEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------TSPNRNH---ISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~---~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      ....+++++|++++++++..|+.|..|+..+.....+..         ..+....   ...+.....++.|..+|..+++
T Consensus       108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            467889999999999999999999999987764332211         0111100   0012344456788888887666


Q ss_pred             EEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          102 VTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 ~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .... ...-...+.++|+|||++| ++-...+.|..|++...+.  ...+ ........+++.|+|.++++.....
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWNLAAKKA--MYTL-SAQDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEE-EEEETTCEEEEEETTTTEE--EEEE-ECCSCEEEEEECSSSSEEEEEETTE
T ss_pred             hheeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcE--EEEe-cCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            5443 3444556899999999855 5666789999999875321  1111 1223466899999998777665543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.40  E-value=0.00014  Score=62.66  Aligned_cols=154  Identities=11%  Similarity=0.155  Sum_probs=94.8

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..-..+++.|+|++++++..|+.|..|+... +....+...         .++..++   ..+..++.|..+|.++..+.
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l---~s~s~D~~i~vwd~~~~~~~  142 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI---ISGSRDKTIKVWTIKGQCLA  142 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEE---EEEETTSCEEEEETTSCEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEE---EEEeCCCeEEEEECCCCeEE
Confidence            4567899999999999999999999999754 332222211         1222222   23345667777887755555


Q ss_pred             EeecCCCCcceEEEccCCC-----EEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCc
Q 024436          104 VLLGNLSFPNGVALSEDGN-----YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG  178 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~-----~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~  178 (268)
                      .+.......+.+++.|+++     .++++....+.|..|++.....  ...+..-.+....+++.|+|+++++....+. 
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-  219 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGE-  219 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCE-
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCe-
Confidence            5655555667889988532     2556777889999999874211  1112111234567899999997776665543 


Q ss_pred             ceeeeEeeC-ccceeeeecc
Q 024436          179 ISKLVLSFP-WIGNVLIKLP  197 (268)
Q Consensus       179 ~~~~v~~~~-~~g~~l~~i~  197 (268)
                          |..+. ..++.+..+.
T Consensus       220 ----i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          220 ----IMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             ----EEEEETTTTEEEEEEE
T ss_pred             ----EEEEECCCCcEEEEec
Confidence                33332 3455554443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.40  E-value=6.4e-05  Score=65.83  Aligned_cols=132  Identities=11%  Similarity=0.042  Sum_probs=83.8

Q ss_pred             eEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEe-------------------ec
Q 024436           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVIL-------------------SG   86 (268)
Q Consensus        38 gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~-------------------~~   86 (268)
                      +++++|||+.++....++.|++++.++........            ..+++.++....                   ..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            67999999988888888899999876542221111            123332222110                   12


Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEcc-CCCEEEEEecC-----CcEEEEEEccCCCCCceeEEEeCC-C-CCC
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE-DGNYILLAETT-----SCRILRYWLKTSKAGTIEIVAQLP-G-FPD  158 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~sp-dg~~lyva~~~-----~~~I~~~~~~~~~~g~~~~~~~l~-g-~Pd  158 (268)
                      .....|+.+|.++++.+.+.......+.++|+| ||+.|+++...     ..+|+.++.+++.   ...+.... + ...
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCT  241 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEE
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccc
Confidence            344789999999898888876666678999999 99877655433     4489999987632   22222111 1 123


Q ss_pred             ceEEcCCCC-EEEEE
Q 024436          159 NIKRSPRGG-FWVGI  172 (268)
Q Consensus       159 gia~d~dG~-l~va~  172 (268)
                      ..+++|||+ |+...
T Consensus       242 ~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          242 HEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEECTTSSCEEEEE
T ss_pred             cceECCCCCEEEEEe
Confidence            468999997 53433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.37  E-value=0.00016  Score=62.64  Aligned_cols=191  Identities=7%  Similarity=0.008  Sum_probs=109.5

Q ss_pred             CCeEEEEeCCCCeEEEEEE-----cCCCCCeeEEEe-ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEE
Q 024436           54 DGRIIKWHQDQRRWLHFAR-----TSPNRNHISVIL-SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLA  127 (268)
Q Consensus        54 ~g~I~~~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva  127 (268)
                      .+.|++++.+|...+.+..     .++..++++-.. .......|++++.++...+++.....    ++++++|+.||++
T Consensus        87 ~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t  162 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYN  162 (302)
T ss_dssp             SEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred             CCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEE
Confidence            3689999998864222211     111222322111 12456789999998666666665533    5679999999999


Q ss_pred             ecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC-CEEEEEecCCCcceeeeEeeCccceeeeecccc-c-----
Q 024436          128 ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID-I-----  200 (268)
Q Consensus       128 ~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG-~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~-~-----  200 (268)
                      +....+|++.+++|+.   .+.+..  + +..+.+.|+| .||.+.+..+.+    |.+...+|.-...+... .     
T Consensus       163 ~~g~~~Iy~~~l~g~~---~~~l~~--~-~~~~~~~P~g~~iy~t~~~~~~~----I~~~~ldG~~~~~Lt~~~~~~~~~  232 (302)
T 3s25_A          163 NPKNGQLYRYDTASQS---EALFYD--C-NCYKPVVLDDTNVYYMDVNRDNA----IVHVNINNPNPVVLTEANIEHYNV  232 (302)
T ss_dssp             CTTTCCEEEEETTTTE---EEEEEC--S-CEEEEEEEETTEEEEEEGGGTTE----EEEECSSSCCCEECSCSCEEEEEE
T ss_pred             eCCCceEEEEECCCCC---EEEEeC--C-CccceeeecCCEEEEEEcCCCcE----EEEEECCCCCeEEEeCCCcceEEE
Confidence            9888899999998732   333322  2 3344566665 477777764323    44444444432222211 0     


Q ss_pred             --eeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          201 --VKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       201 --~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                        ..+..+-.  ... ..+..++.||...+.+...  .    ...+...+++||.+.+....|.+++++
T Consensus       233 ~g~~Iy~~~~--~~~-~~i~~~~~DG~~r~~l~~~--~----~~~i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          233 YGSLIFYQRG--GDN-PALCVVKNDGTGFKELAKG--E----FCNINVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             ETTEEEEEEC--SSS-CEEEEEETTSCCCEEEEES--C----EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred             CCCEEEEEEC--CCC-cEEEEEECCCCccEEeeCC--c----cceEEEeCCEEEEEECCCCeEEEEECC
Confidence              11111111  111 3456666666544444321  1    224566899999999999989888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.37  E-value=0.00053  Score=59.39  Aligned_cols=137  Identities=12%  Similarity=0.183  Sum_probs=86.4

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQ-  101 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  101 (268)
                      ...-.+++++|||++++++..|+.|..|+.. ++....+.         ...+++.++.   .+...+.+..++..+++ 
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA---CGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEE---EEETTCEEEEEETTTCSB
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEE---EEeCCCeEEEEECccCCC
Confidence            4567899999999999999999999999864 33222221         1123333332   22345667777765432 


Q ss_pred             ----EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          102 ----VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 ----~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                          ...+.........++|+++++ + ++.+..+.|..|++..+.  ....+..-.+....+++.++|+++++....+
T Consensus       132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~  206 (340)
T 1got_B          132 NVRVSRELAGHTGYLSCCRFLDDNQ-I-VTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SCEEEEEEECCSSCEEEEEEEETTE-E-EEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEEEecCCCccEEEEEECCCCc-E-EEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence                223344445567899999884 4 455678899999987421  1122211123456789999999877766555

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.36  E-value=0.00011  Score=65.16  Aligned_cols=144  Identities=13%  Similarity=0.037  Sum_probs=95.6

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .....+++++|+|+.++++..++.|..|+.... ....+..         ..+....+.....+..++.|..+|..+++.
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            346889999999999999999999999987643 2222211         122222332222233578999999887776


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEe-cCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAE-TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~-~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..........+.++|+|+++.|+++. ...+.|..|++..+.......+..-.+....++++++|+++++....+
T Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            65555556678999999999887763 467899999987532111111111224577899999998777665554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.35  E-value=0.00029  Score=68.50  Aligned_cols=213  Identities=13%  Similarity=0.185  Sum_probs=120.1

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--C----CCCeeEEEee---------cCCcceEEEEeCCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--P----NRNHISVILS---------GDKTGRLMKYDPAT   99 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--~----~~~~~~~~~~---------~~~~g~v~~~d~~~   99 (268)
                      ...+++.+++|+ ++++..++.|.++++....+..+....  +    ..+.+..+..         +...+.|+++|+++
T Consensus       358 ~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          358 VVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             eeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            356788999999 556777778999988755444442110  0    0111222211         11235799999988


Q ss_pred             CeEEEeecC-----CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe------CC-CCCCceEEcCCCC
Q 024436          100 KQVTVLLGN-----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ------LP-GFPDNIKRSPRGG  167 (268)
Q Consensus       100 ~~~~~~~~~-----~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~------l~-g~Pdgia~d~dG~  167 (268)
                      ++.+.....     ......|+.+++|+ ||++..  +.|++|+.+++   ....+..      ++ .....++.|++|+
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~d~~g~  510 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL--SALVRFNPEQR---SFTTIEKEKDGTPVVSKQITTLFRDSHKR  510 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES--SCEEEEETTTT---EEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec--CceeEEeCCCC---eEEEccccccccccCCceEEEEEECCCCC
Confidence            877765421     12346788888886 888865  56899997642   2222211      11 2345688999999


Q ss_pred             EEEEEecCCCcceeeeEeeCc-cceeeeecc-------ccceeeeeecccc-------CCCcEEEEEECCCCCEEEEEEc
Q 024436          168 FWVGIHSRRKGISKLVLSFPW-IGNVLIKLP-------IDIVKIHSSLVKL-------SGNGGMAMRISEQGNVLEILEE  232 (268)
Q Consensus       168 l~va~~~~~~~~~~~v~~~~~-~g~~l~~i~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~~~~~~~  232 (268)
                      +|++.. .+      +.++.+ .+++  .+.       .+...+.+++...       +.. | +.+++++......+..
T Consensus       511 lWigt~-~G------l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G-l~~~d~~~~~~~~~~~  579 (795)
T 4a2l_A          511 LWIGGE-EG------LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G-FYCFNEKDKQIKRYNT  579 (795)
T ss_dssp             EEEEES-SC------EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C-EEEEETTTTEEEEECG
T ss_pred             EEEEeC-Cc------eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C-ceeECCCCCcEEEeCC
Confidence            999987 33      444432 2333  211       1111222222110       111 2 4567776666666654


Q ss_pred             CCCCceeceEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          233 IGRKMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       233 ~~g~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+|-.-..+..+.. .+|+||+++  .+.|.+++.+
T Consensus       580 ~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~  613 (795)
T 4a2l_A          580 TNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPE  613 (795)
T ss_dssp             GGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETT
T ss_pred             CCCCchhheEEEEECCCCCEEEEc--CCceEEEcCC
Confidence            44422233455554 468999999  4678887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.35  E-value=0.00013  Score=63.91  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..-.+++++|||++++++..|+.|..|+.... ....+..         ..++...+  +.....++.|..+|..+++..
T Consensus       128 ~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~--l~s~s~D~~v~iwd~~~~~~~  205 (344)
T 4gqb_B          128 DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV--FLSCSEDNRILLWDTRCPKPA  205 (344)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE--EEEEETTSCEEEEETTSSSCE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc--eeeecccccccccccccccee
Confidence            35688999999999999999999999997543 2222211         11222212  123345678888888776544


Q ss_pred             Eee---cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC-CEEEEEecCC
Q 024436          104 VLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRR  176 (268)
Q Consensus       104 ~~~---~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG-~l~va~~~~~  176 (268)
                      ...   ......+.++++|++..++++.+.++.|..|++..++.  ...+..-.+....+++.|+| +++++....+
T Consensus       206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            332   22335678999997766778878889999999875321  22222212335678999998 4555554443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.35  E-value=0.00077  Score=58.56  Aligned_cols=146  Identities=16%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEE------------cCCCCCeeEEEeecCCcce
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FAR------------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~-~~~------------~~~~~~~~~~~~~~~~~g~   91 (268)
                      +.++.-........++++|+|++++++..|+.|..|+.++..+.. ...            .++++.++.   ....++.
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~---s~s~D~~   84 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA---SASFDAT   84 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE---EEETTSC
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE---EEECCCc
Confidence            444443322246789999999999999999999988765543221 111            123333332   2223444


Q ss_pred             EEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCC
Q 024436           92 LMKYDPATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPR  165 (268)
Q Consensus        92 v~~~d~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~d  165 (268)
                      +..++..+++.   ..+...-...+.++|+|||++| ++-+..+.|..|+++...  .......+   ......+++.++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~s~D~~v~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL-ATCSRDKSVWVWEVDEED--EYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEEECTTS--CEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE-EEEECCCeEEEEECCCCC--CeEEEEEecCcCCCeEEEEECCC
Confidence            44444443332   2333444556899999999855 566677899999987432  12222222   223457889999


Q ss_pred             CCEEEEEecCC
Q 024436          166 GGFWVGIHSRR  176 (268)
Q Consensus       166 G~l~va~~~~~  176 (268)
                      |+++++....+
T Consensus       162 ~~~l~s~s~d~  172 (345)
T 3fm0_A          162 QELLASASYDD  172 (345)
T ss_dssp             SSCEEEEETTS
T ss_pred             CCEEEEEeCCC
Confidence            98666555444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.35  E-value=0.00017  Score=63.28  Aligned_cols=216  Identities=15%  Similarity=0.086  Sum_probs=119.6

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      ...+++++|+|++++++..+|.|..|+.+++....+..         ..++..++.   .....+.|..+|..+++....
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHII---SMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEE---EEETTCCEEEEETTTTEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEE---EEecCCeEEEEECCCCcEEEE
Confidence            57899999999999999999999999977764333321         123333332   234567888888877765443


Q ss_pred             ecCCC-C---------------cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436          106 LGNLS-F---------------PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus       106 ~~~~~-~---------------pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      ..... .               ...++++|++. + ++....+.|..|++.....  ...+....+....++++++|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDK-F-VIPGPKGAIFVYQITEKTP--TGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTE-E-EEECGGGCEEEEETTCSSC--SEEECCCSSCEEEEEEETTTTEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCE-E-EEEcCCCeEEEEEcCCCce--eeeeccCCCceEEEEECCCCCEE
Confidence            32221 2               67899999873 4 4556678999999875321  22222222345678999999866


Q ss_pred             EEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeec-cc------cCCCcEEEEEECC-CCCEEEEEEcCCCCceec
Q 024436          170 VGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSL-VK------LSGNGGMAMRISE-QGNVLEILEEIGRKMWRS  240 (268)
Q Consensus       170 va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~-~~------~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~  240 (268)
                      ++....+.     |..+. ..++.+..+......+.++. .+      .... +.+...+. .++.+..+....+    .
T Consensus       263 ~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~----~  332 (425)
T 1r5m_A          263 LSASDDGT-----LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMD-GSVRLWSLKQNTLLALSIVDGV----P  332 (425)
T ss_dssp             EEEETTSC-----EEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETT-SEEEEEETTTTEEEEEEECTTC----C
T ss_pred             EEEcCCCE-----EEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCC-CcEEEEECCCCcEeEecccCCc----c
Confidence            66554442     33333 33443333322111122111 00      0111 22333443 3455555544322    2


Q ss_pred             eEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436          241 ISEVEE-KDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       241 ~s~~~~-~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ++.+.. .++++++....+..|.+++++
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            334443 345555545556778877753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.35  E-value=0.00098  Score=58.94  Aligned_cols=165  Identities=14%  Similarity=0.111  Sum_probs=99.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcCC-------CCCeeEEEeecCCcceEEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSP-------NRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~~-------~~~~~~~~~~~~~~g~v~~~   95 (268)
                      ....+..+......+++++|+|++++++..+|.|..|+... +....+.....       ++.+   +..+...+.|..+
T Consensus       125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---l~~~~~dg~i~i~  201 (401)
T 4aez_A          125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV---LSSGSRSGAIHHH  201 (401)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTE---EEEEETTSEEEEE
T ss_pred             EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCE---EEEEcCCCCEEEE
Confidence            44455554345688999999999999999999999998754 32222211000       0111   2233456788888


Q ss_pred             eCCC-C-eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEE
Q 024436           96 DPAT-K-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus        96 d~~~-~-~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~  172 (268)
                      |..+ + ....+........+++|+||++.|+ +.+..+.|..|++....  ....+....+....+++.++|. ++++.
T Consensus       202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA-SGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred             ecccCcceeeEEcCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEe
Confidence            8763 2 3444555556678999999998665 55567899999987422  1122222234567899999874 66654


Q ss_pred             ec-CCCcceeeeEeeC-ccceeeeeccc
Q 024436          173 HS-RRKGISKLVLSFP-WIGNVLIKLPI  198 (268)
Q Consensus       173 ~~-~~~~~~~~v~~~~-~~g~~l~~i~~  198 (268)
                      .+ ....    |..+. ..++.+..+..
T Consensus       279 ~gs~d~~----i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          279 GGTMDKQ----IHFWNAATGARVNTVDA  302 (401)
T ss_dssp             CCTTTCE----EEEEETTTCCEEEEEEC
T ss_pred             cCCCCCE----EEEEECCCCCEEEEEeC
Confidence            31 1212    33332 45665555543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.34  E-value=0.00012  Score=64.28  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEE--EEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWL--HFA-----------RTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~--~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      .-.++++.||+. ++++..+|.|..|+.+. +...  .+.           ..++++.++.   .+...+.|..+|..++
T Consensus        84 ~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~---sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           84 GVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV---SGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             CEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE---EEETTSCEEEEETTTT
T ss_pred             CEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE---EEeCCCeEEEEECCCC
Confidence            356799999976 77888999999888643 2111  111           1123333332   3445678888898877


Q ss_pred             eEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCC-CCCCceEEcCCC-CEEEEEecCC
Q 024436          101 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLP-GFPDNIKRSPRG-GFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~-g~Pdgia~d~dG-~l~va~~~~~  176 (268)
                      +..... .+-..-+.++|+|+++.++++.+..+.|..|++..++.  ...+. ... ..+..+++.+++ +++++....+
T Consensus       160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            765444 34455689999999977888888889999999875321  12221 111 235678888854 6766555444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.34  E-value=0.00021  Score=62.94  Aligned_cols=175  Identities=8%  Similarity=-0.034  Sum_probs=96.7

Q ss_pred             cceEEECCCCCEEEEEe--CCCeEEEEeCCCCe-EEEEEE--------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           36 PESLAFDALGEGPYTGV--SDGRIIKWHQDQRR-WLHFAR--------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~--~~g~I~~~~~~g~~-~~~~~~--------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...++|+|||++++++.  .++.|..|+..... ...+..        .+|++.++...    ..+.+.+++..+++...
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~----s~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI----TGSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE----CSSCEEEEETTTCCEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec----cceeEEEEEeccCccee
Confidence            45799999999887654  47888888876442 222211        12333333211    23456666655554332


Q ss_pred             ee---cCCCCcceEEEccCCCEEEEEecCCc---EEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEecC
Q 024436          105 LL---GNLSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       105 ~~---~~~~~pnGia~spdg~~lyva~~~~~---~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ..   ..-...+.++|+|||+.++.+.....   .++.|+....... ......+.   .....++++|||+++++....
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence            21   12233578999999987766543332   5667776532110 11111121   234578999999987766555


Q ss_pred             CCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEE
Q 024436          176 RKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE  231 (268)
Q Consensus       176 ~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  231 (268)
                      +.     |..+. .+++.+..+..+          .... ..-+.++|||+.+.+-.
T Consensus       291 ~~-----V~iwd~~~~~~~~~~~~g----------H~~~-V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          291 NS-----IALVKLKDLSMSKIFKQA----------HSFA-ITEVTISPDSTYVASVS  331 (365)
T ss_dssp             SC-----EEEEETTTTEEEEEETTS----------SSSC-EEEEEECTTSCEEEEEE
T ss_pred             CE-----EEEEECCCCcEEEEecCc----------ccCC-EEEEEECCCCCEEEEEe
Confidence            43     44443 456666554322          1222 45677777777766654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.33  E-value=0.00011  Score=64.69  Aligned_cols=136  Identities=13%  Similarity=0.231  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC-------C-e------e-EEEeecCC--cc--eEEEEeCCCCeE
Q 024436           42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR-------N-H------I-SVILSGDK--TG--RLMKYDPATKQV  102 (268)
Q Consensus        42 ~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~-------~-~------~-~~~~~~~~--~g--~v~~~d~~~~~~  102 (268)
                      +|...+++.....+.+..++.+|+.+..+.   .++       + +      + ..+.+...  .+  ++|.+||+++++
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            445565555556678888888887543321   111       0 1      0 12334444  45  557779888877


Q ss_pred             EEee-------cCCCCcceEEE--ccC-CC-EEEEEecCCcEEEEEEccCCCCC--ceeEEEe--CCCCCCceEEcCC-C
Q 024436          103 TVLL-------GNLSFPNGVAL--SED-GN-YILLAETTSCRILRYWLKTSKAG--TIEIVAQ--LPGFPDNIKRSPR-G  166 (268)
Q Consensus       103 ~~~~-------~~~~~pnGia~--spd-g~-~lyva~~~~~~I~~~~~~~~~~g--~~~~~~~--l~g~Pdgia~d~d-G  166 (268)
                      +.+.       ..+..|.|+++  +|+ ++ ++||++.. +++..|++.....+  ..+.+.+  +++.|.|+++|++ |
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence            7662       34578999999  775 43 68888765 89999888421111  2233333  5678999999974 6


Q ss_pred             CEEEEEecCCCcceeeeEeeC
Q 024436          167 GFWVGIHSRRKGISKLVLSFP  187 (268)
Q Consensus       167 ~l~va~~~~~~~~~~~v~~~~  187 (268)
                      .||++....+      |++|.
T Consensus       193 ~Lyv~eEd~G------Iw~~d  207 (355)
T 3amr_A          193 RLYIAEEDEA------IWKFS  207 (355)
T ss_dssp             EEEEEETTTE------EEEEE
T ss_pred             eEEEecccce------EEEEe
Confidence            8999998854      55554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.33  E-value=0.0014  Score=58.01  Aligned_cols=150  Identities=15%  Similarity=0.180  Sum_probs=90.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEE---------------------------EcCCCCCeeEEEee
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFA---------------------------RTSPNRNHISVILS   85 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~---------------------------~~~~~~~~~~~~~~   85 (268)
                      ....+++++|||++++++. ++.+..++. +|+....+.                           ..++++.++   ..
T Consensus        65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l---~s  140 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL---AT  140 (393)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE---EE
T ss_pred             CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE---EE
Confidence            3568999999999888765 566766664 333222111                           011222222   23


Q ss_pred             cCCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           86 GDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      +..++.|..+|.++++..... ..-...+.++|+||++.|+ +.+..+.|..|++..+.   .............+++.+
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~  216 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSP  216 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE---EEEEEECSSCEEEEEECS
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCe---eEEEEEcCCCcEEEEEEC
Confidence            345678888888877665444 3444568999999998664 56678999999987532   111122333456788888


Q ss_pred             -CCCEEEEEecCCCcceeeeEeeC-ccceeeeec
Q 024436          165 -RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL  196 (268)
Q Consensus       165 -dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i  196 (268)
                       +|+++++....+.     |..+. ..++.+..+
T Consensus       217 ~~~~~l~~~s~d~~-----v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          217 GDGKYIAAGSLDRA-----VRVWDSETGFLVERL  245 (393)
T ss_dssp             TTCCEEEEEETTSC-----EEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEcCCCc-----EEEEECCCCcEEEee
Confidence             7887776655543     33332 345555444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.32  E-value=0.00066  Score=58.80  Aligned_cols=148  Identities=13%  Similarity=0.073  Sum_probs=93.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC----eE-EEEEEcCCCCC----ee--EEEeecCCcceE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR----RW-LHFARTSPNRN----HI--SVILSGDKTGRL   92 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~----~~-~~~~~~~~~~~----~~--~~~~~~~~~g~v   92 (268)
                      .+..++... .....++++|+|++++++..++.|..++....    .. ..+... .+.-    +.  ..++.....+.|
T Consensus        89 ~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~l~s~s~d~~i  166 (340)
T 1got_B           89 KVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQIVTSSGDTTC  166 (340)
T ss_dssp             EEEEEECSS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC-SSCEEEEEEEETTEEEEEETTSCE
T ss_pred             cceEeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC-CccEEEEEECCCCcEEEEECCCcE
Confidence            445555442 35678999999999999999999988886432    11 111110 0000    00  012334456788


Q ss_pred             EEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436           93 MKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus        93 ~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      ..+|..+++..... ..-...+.++|+|+++ ++++.+..+.|..|++..+.  ....+..-......+++.|+|+++++
T Consensus       167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s  243 (340)
T 1got_B          167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence            88898877655443 3344568999999997 55677788999999987432  12222222234668999999997777


Q ss_pred             EecCC
Q 024436          172 IHSRR  176 (268)
Q Consensus       172 ~~~~~  176 (268)
                      ....+
T Consensus       244 ~s~d~  248 (340)
T 1got_B          244 GSDDA  248 (340)
T ss_dssp             EETTS
T ss_pred             EcCCC
Confidence            66554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.30  E-value=0.00042  Score=61.89  Aligned_cols=136  Identities=10%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ....++++|++.+++++..|+.|..|+... +....+.         ...+++.++   ..+..++.|..+|..+++...
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l---~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL---ASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE---EEEETTSCCCEEETTSSCEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE---EEEeCCCeEEEEeCCCCceeE
Confidence            567899999999999999999999998653 2212211         112333322   233445667777777655433


Q ss_pred             -eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 -LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 -~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                       +...-...+.++|+|+++.| ++.+..+.|..|++..+.  ....+..-......++++++|+++++....+
T Consensus       187 ~~~~h~~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          187 TMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             CCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEcCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence             33444556889999999855 566678999999987532  1222322222355678889998777766554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.30  E-value=0.00068  Score=60.01  Aligned_cols=135  Identities=20%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      ..+++++|||++++++..|+.|..|+....... .+.         ...+++.++   +....++.|..+|..+++....
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l---~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL---VSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE---EEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE---EEecCCCcEEEEECCCCeeEEE
Confidence            468999999999999999999999997654322 111         112233322   2334567888899887776555


Q ss_pred             ecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe----C---CCCCCceEEcCCCCEEEEEecCC
Q 024436          106 LGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----L---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~----l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .........++++| ||+ ++++.+..+.|..|++..+..  ...+..    .   ......++++++|+++++....+
T Consensus       203 ~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            54445567899999 787 445666788999999875321  111110    0   12345789999998776665544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.30  E-value=0.00014  Score=70.10  Aligned_cols=138  Identities=13%  Similarity=0.127  Sum_probs=90.2

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..+|.|..|+.. ++....+...         +++++++.   .....|.|..+|..+++..
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWII---VGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEE---EEETTSEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEE---EEeCCCeEEEEECCCCcEE
Confidence            468999999999999999999999999964 3332222211         12222222   2335688888988777654


Q ss_pred             -EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC-CCCEEEEEecCC
Q 024436          104 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGFWVGIHSRR  176 (268)
Q Consensus       104 -~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~-dG~l~va~~~~~  176 (268)
                       .+.........++|+||++.|++ .+..+.|..|+++.+. .....+....+....+++.| +|+++++....+
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEE-EETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEE-EcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence             34445556789999999987664 4567899999997531 11122222234467889998 777666555544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.28  E-value=6.6e-05  Score=65.96  Aligned_cols=138  Identities=18%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeE--EEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRW--LHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~--~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      .-.++++.|+++ ++++..+|.|..|+... +..  ..+.           ...+++.++   ......+.|..+|..++
T Consensus        96 ~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l---~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B           96 GVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA---VSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             CEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEE---EEEETTSCEEEEETTTT
T ss_pred             CEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEE---EEEeCCCeEEEEECCCC
Confidence            457899999998 55667789988876532 110  0010           112333333   23345678888998877


Q ss_pred             eEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC-CEEEEEecCC
Q 024436          101 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG-~l~va~~~~~  176 (268)
                      +..... ..-...+.++|+|+++.++++....+.|..|++..++......+......+..+++.|++ +++++....+
T Consensus       172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~  249 (357)
T 4g56_B          172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG  249 (357)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred             cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence            765444 344556899999998777788888899999998743211111111112346678888875 5655544433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00023  Score=69.05  Aligned_cols=213  Identities=14%  Similarity=0.148  Sum_probs=118.1

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeec--------CCcceEEEEeCCCCeEEEee
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSG--------DKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~g~v~~~d~~~~~~~~~~  106 (268)
                      ...+++.+++|+ ++++...+.+.++++....+..+.........+..+.++        .. +.|+++|+++++.+...
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEE
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecc
Confidence            456788899998 555666678889988654443332110011112211111        11 46889999877665543


Q ss_pred             cC------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC----CceEEcCCCCEEEEEecCC
Q 024436          107 GN------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP----DNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       107 ~~------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P----dgia~d~dG~l~va~~~~~  176 (268)
                      ..      ....+.|+.+++|+ ||++... +.|++|+.++.   ....+....+.|    ..|+.|++|+||++.. .+
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~-lWigt~~-~Gl~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G  559 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGR-FWIGTFG-GGVGIYTPDMQ---LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG  559 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCC-EEEEESS-SCEEEECTTCC---EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred             cCcccccccceeEEEEEcCCCC-EEEEEcC-CCEEEEeCCCC---eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence            21      24567899999996 8888643 45888887642   233332222333    4688899999999987 32


Q ss_pred             Ccceeee-EeeCccceeeeeccc----cceeeeeeccc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceec---e
Q 024436          177 KGISKLV-LSFPWIGNVLIKLPI----DIVKIHSSLVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRS---I  241 (268)
Q Consensus       177 ~~~~~~v-~~~~~~g~~l~~i~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~---~  241 (268)
                            + .++.+....+..+..    +...+.+++..       .... | +.+++++.+.+..+...+|-....   -
T Consensus       560 ------lv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~-G-l~~~~~~~~~~~~~~~~dGl~~~~f~~~  631 (781)
T 3v9f_A          560 ------LVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNT-G-ISCYITSKKCFYTYDHSNNIPQGSFISG  631 (781)
T ss_dssp             ------EEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSS-C-EEEEETTTTEEEEECGGGTCCSSCEEEE
T ss_pred             ------ceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCC-c-eEEEECCCCceEEecccCCccccccccC
Confidence                  3 555433222222211    11111111110       1122 3 567888777777776666532221   2


Q ss_pred             EEEEEeCCEEEEeeCCCCeEEEEe
Q 024436          242 SEVEEKDGNLWIGSVNMPYAGLYN  265 (268)
Q Consensus       242 s~~~~~~g~Lyv~s~~~~~v~~~~  265 (268)
                      +.+...+|+||+|+..+  +.+++
T Consensus       632 ~~~~~~~G~l~~g~~~G--l~~f~  653 (781)
T 3v9f_A          632 CVTKDHNGLIYFGSING--LCFFN  653 (781)
T ss_dssp             EEEECTTSCEEEEETTE--EEEEC
T ss_pred             ceEECCCCEEEEECCCc--eEEEC
Confidence            23334579999999764  55554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.26  E-value=0.00023  Score=68.07  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             eEEEEeCCC-CeEEEeec---CCCCcceEEEccCCCEEEEEec----CCcEEEEEEccCCCCCceeEEEe-CCC---CCC
Q 024436           91 RLMKYDPAT-KQVTVLLG---NLSFPNGVALSEDGNYILLAET----TSCRILRYWLKTSKAGTIEIVAQ-LPG---FPD  158 (268)
Q Consensus        91 ~v~~~d~~~-~~~~~~~~---~~~~pnGia~spdg~~lyva~~----~~~~I~~~~~~~~~~g~~~~~~~-l~g---~Pd  158 (268)
                      .|+.+|.++ ++.+.+..   .......++| |||++|+++..    ....|+.++++++..  ...+.. ..+   ...
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCS
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCC
Confidence            788999887 77665542   2344578999 99999988754    245889999875431  122221 111   235


Q ss_pred             ceEEcCCCCEEEEEecC
Q 024436          159 NIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       159 gia~d~dG~l~va~~~~  175 (268)
                      .+++.+||+++++....
T Consensus       341 ~~~~spdg~~~~~~~~~  357 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERT  357 (741)
T ss_dssp             CCEECTTSCEEEEECTT
T ss_pred             ceEECCCCeEEEEecCC
Confidence            89999999965554433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.25  E-value=0.0003  Score=61.66  Aligned_cols=136  Identities=13%  Similarity=0.041  Sum_probs=82.8

Q ss_pred             CCcceEEECCCCC-EEEEEeCCCeEEEEeC----CCCe-------EEEEEE-------------------cCCCCCeeEE
Q 024436           34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQ----DQRR-------WLHFAR-------------------TSPNRNHISV   82 (268)
Q Consensus        34 ~~P~gia~~~dG~-~l~~~~~~g~I~~~~~----~g~~-------~~~~~~-------------------~~~~~~~~~~   82 (268)
                      ....+++++|+|+ +++++..++.|..|+.    ....       ...+..                   ..+++.++. 
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  124 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV-  124 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE-
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE-
Confidence            4688999999999 9999999999998876    4322       111111                   012222222 


Q ss_pred             EeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC------
Q 024436           83 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF------  156 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~------  156 (268)
                        ....++.|..+|.+...+..+.........++|+|+++.|+++ ...+.|..|++..+..  ...+......      
T Consensus       125 --~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          125 --TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTV--MQHFELKETGGSSINA  199 (425)
T ss_dssp             --EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEE--EEEECCC---------
T ss_pred             --EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcE--EEEeeccccCccceee
Confidence              2334577888886544444455455667899999999977655 4578899999874321  1111111111      


Q ss_pred             ---------CCceEEcCCCCEEEEEecC
Q 024436          157 ---------PDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       157 ---------Pdgia~d~dG~l~va~~~~  175 (268)
                               ...+++.+++.++++...+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g  227 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKG  227 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGG
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCC
Confidence                     6678888877766655544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.24  E-value=0.00029  Score=60.16  Aligned_cols=148  Identities=11%  Similarity=0.090  Sum_probs=91.4

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC--Cee----EEEeecCCcceEEEEeCCCCeEE-EeecC
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR--NHI----SVILSGDKTGRLMKYDPATKQVT-VLLGN  108 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~--~~~----~~~~~~~~~g~v~~~d~~~~~~~-~~~~~  108 (268)
                      ...++++++|. ++++..++.|++++++|+....+....+.-  ...    ..++. .  +.|+++|++ ++.. .....
T Consensus       139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d~~-g~~~~~~~~~  213 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAINPD-GTEKWNFYAG  213 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEECTT-SCEEEEECCS
T ss_pred             eeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEECCC-CcEEEEEccC
Confidence            45678888998 566677899999999866422222111100  000    01112 2  789999954 5433 23333


Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW  188 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~  188 (268)
                      ....+.++++++|+ ||++.. .+.|++++.++..   ...+......+..+++|++|+||++...++      +.++.+
T Consensus       214 ~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~l~v~t~~gg------l~~~d~  282 (330)
T 3hxj_A          214 YWTVTRPAISEDGT-IYVTSL-DGHLYAINPDGTE---KWRFKTGKRIESSPVIGNTDTIYFGSYDGH------LYAINP  282 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEEET-TTEEEEECTTSCE---EEEEECSSCCCSCCEECTTSCEEEECTTCE------EEEECT
T ss_pred             CcceeceEECCCCe-EEEEcC-CCeEEEECCCCCE---eEEeeCCCCccccceEcCCCeEEEecCCCC------EEEECC
Confidence            35577899999985 888754 5788999754421   122222223466789999999999987654      666666


Q ss_pred             cceeeeecccc
Q 024436          189 IGNVLIKLPID  199 (268)
Q Consensus       189 ~g~~l~~i~~~  199 (268)
                      +|+.+.....+
T Consensus       283 ~g~~~~~~~~~  293 (330)
T 3hxj_A          283 DGTEKWNFETG  293 (330)
T ss_dssp             TSCEEEEEECS
T ss_pred             CCcEEEEEEcC
Confidence            78877665543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.24  E-value=0.00032  Score=60.56  Aligned_cols=166  Identities=10%  Similarity=0.017  Sum_probs=94.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcce
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~   91 (268)
                      .+..+.-. -....+++++|+|++++++..++.|..|+.....+.....            ..+++.++.   ....++.
T Consensus        44 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d~~  119 (372)
T 1k8k_C           44 QVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA---VGSGSRV  119 (372)
T ss_dssp             EEEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE---EEETTSS
T ss_pred             eeeeecCC-CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE---EEeCCCE
Confidence            34444422 3467899999999999999999999988865432221111            122223222   2223455


Q ss_pred             EEEEeCCCCe----EEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC-------------CCceeEEEeC
Q 024436           92 LMKYDPATKQ----VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-------------AGTIEIVAQL  153 (268)
Q Consensus        92 v~~~d~~~~~----~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~-------------~g~~~~~~~l  153 (268)
                      |..+|.++++    ...... .....+.++|+|+++.|+ +.+..+.|..|++....             .........+
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA-AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE-EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE-EEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            5444444333    222222 245568999999998665 45567899999964210             0011222222


Q ss_pred             ---CCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeecccc
Q 024436          154 ---PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID  199 (268)
Q Consensus       154 ---~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~  199 (268)
                         .+....++++++|+++++....+.     |..+. ..++.+..+...
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDST-----VCLADADKKMAVATLASE  243 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTE-----EEEEEGGGTTEEEEEECS
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCE-----EEEEECCCCceeEEEccC
Confidence               234678999999986666555542     44443 356666555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.24  E-value=0.00046  Score=59.79  Aligned_cols=140  Identities=16%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE------------EcCCCC-------CeeEEEeecCCcceEEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA------------RTSPNR-------NHISVILSGDKTGRLMK   94 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~------------~~~~~~-------~~~~~~~~~~~~g~v~~   94 (268)
                      ....+++++|+|+.++++..|+.|..|+..+.......            ...+..       ++...+.....++.|..
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  198 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV  198 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence            45788999999999999999999999987654221111            011111       00011223345678888


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEec
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~  174 (268)
                      +|........+...-...+.++|+|||++| ++.+..+.|..|++..... ....+. .......++++|++.+..+...
T Consensus       199 wd~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~-~~~~~~-~~~~v~~v~~sp~~~~la~~~d  275 (343)
T 2xzm_R          199 WNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTY-PQREFD-AGSTINQIAFNPKLQWVAVGTD  275 (343)
T ss_dssp             EETTTEEEEEEECCSSCEEEEEECTTSSEE-EEEETTCEEEEEESSCCSS-CSEEEE-CSSCEEEEEECSSSCEEEEEES
T ss_pred             EcCCCceeEEEcCccccceEEEECCCCCEE-EEEcCCCeEEEEECCCCcc-cceeec-CCCcEEEEEECCCCCEEEEECC
Confidence            886533333344444567899999999855 5666789999999843211 112221 2224678999999987665554


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      ..
T Consensus       276 ~~  277 (343)
T 2xzm_R          276 QG  277 (343)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.23  E-value=0.0017  Score=55.04  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=88.0

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..++.|..|+... +....+..         ..++.+++   ..+..++.|..+|..+++..
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE---EEEETTSCEEEEETTTCCEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE---EEEeCCCcEEEEECCCCEEE
Confidence            4678899999999999999999999998753 32222211         12222322   23345678888998876654


Q ss_pred             Eee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEEEecCC
Q 024436          104 VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       104 ~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ... ........++|+|+++.|+ +.+..+.|..|++..+.  ....+... ......++++++|+++++....+
T Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          143 KTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEecCCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            333 3334457899999998554 55677899999987432  11222111 12235689999998777665554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.0006  Score=58.78  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCC--CCeeEEEeecCCcceEEEEeCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPN--RNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~--~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      ....+++++|+|++++++..+|.|..|+.++.........            .+.  ..++   .....++.|..+|..+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l---~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL---ASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE---EEEETTSCEEEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEE---EEeccCCEEEEEEcCC
Confidence            4678999999999999999999999887653221111111            111  2222   2333456777777766


Q ss_pred             CeE---EEeecCCCCcceEEEccC--CCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC----------
Q 024436          100 KQV---TVLLGNLSFPNGVALSED--GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP----------  164 (268)
Q Consensus       100 ~~~---~~~~~~~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~----------  164 (268)
                      ++.   ..+.........++|+|+  ++.|+ +-+..+.|..|++..........+.........+++.+          
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLL-VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  167 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEE-EecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence            652   223334456789999999  87555 45677899999997542212222222223356777887          


Q ss_pred             ---CCCEEEEEecCC
Q 024436          165 ---RGGFWVGIHSRR  176 (268)
Q Consensus       165 ---dG~l~va~~~~~  176 (268)
                         +++++++....+
T Consensus       168 ~~~~~~~l~~~~~dg  182 (379)
T 3jrp_A          168 GTKESRKFVTGGADN  182 (379)
T ss_dssp             --CTTCEEEEEETTS
T ss_pred             CCCCCCEEEEEeCCC
Confidence               687766665554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.21  E-value=0.00054  Score=60.45  Aligned_cols=213  Identities=15%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE-EEeec
Q 024436           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVILSGDKTGRLMKYDPATKQV-TVLLG  107 (268)
Q Consensus        39 ia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~  107 (268)
                      .++.++|++++++..++.|..|+..........          ...+++.++   .....++.|..+|..+++. ..+..
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l---~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL---ISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE---EEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE---EEEeCCCeEEEEeCCCCcCceEEcC
Confidence            367899999999999999999987654322210          112233322   2334567888888876654 34444


Q ss_pred             CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC------------------------CCCCCceEEc
Q 024436          108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL------------------------PGFPDNIKRS  163 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l------------------------~g~Pdgia~d  163 (268)
                      .....+.++|+||++.|+ +.+..+.|..|++..+..  ...+...                        ......++++
T Consensus       180 h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             CSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             CCCcEEEEEEcCCCCEEE-EEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            555678999999998665 556778899999874321  1111100                        1234567888


Q ss_pred             CCCCEEEEEecCCCcceeeeEeeC-ccceeeeeccccc-eeeeeeccccCCCcE-EEEEECCCCC-----------EEEE
Q 024436          164 PRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDI-VKIHSSLVKLSGNGG-MAMRISEQGN-----------VLEI  229 (268)
Q Consensus       164 ~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~-~~~~~~~~~~~~~~~-~~~~~~~~G~-----------~~~~  229 (268)
                      ++|+++++....+.     |..+. ..++.+..+.... ..+.++.  ..+... .++.-+.+|.           ++..
T Consensus       257 ~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  329 (420)
T 3vl1_A          257 TYGKYVIAGHVSGV-----ITVHNVFSKEQTIQLPSKFTCSCNSLT--VDGNNANYIYAGYENGMLAQWDLRSPECPVGE  329 (420)
T ss_dssp             CTTEEEEEEETTSC-----EEEEETTTCCEEEEECCTTSSCEEEEE--ECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred             CCCCEEEEEcCCCe-----EEEEECCCCceeEEcccccCCCceeEE--EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence            99987666655543     33332 3455444443321 1122211  011101 2333332332           2233


Q ss_pred             EEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          230 LEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       230 ~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +....+   ..++.+...+++++++...+..|.+.+++
T Consensus       330 ~~~~~~---~~v~~~~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          330 FLINEG---TPINNVYFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EEESTT---SCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred             hhccCC---CCceEEEeCCCCEEEEecCCccEEEEecc
Confidence            322111   12444555678877777778888777653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.21  E-value=0.0003  Score=60.90  Aligned_cols=201  Identities=10%  Similarity=0.058  Sum_probs=107.8

Q ss_pred             CCCCEEEEEe--CCCeEEEEeCCCCeEEEEEE-----cCCCCCeeEEEeecC-----------CcceEEEEeCCCCeEEE
Q 024436           43 ALGEGPYTGV--SDGRIIKWHQDQRRWLHFAR-----TSPNRNHISVILSGD-----------KTGRLMKYDPATKQVTV  104 (268)
Q Consensus        43 ~dG~~l~~~~--~~g~I~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~-----------~~g~v~~~d~~~~~~~~  104 (268)
                      .+|+.+|...  ++++|++++.+|.....+..     ..+.+.|+.=.-...           ....|++++.++++.+.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~  102 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV  102 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE
Confidence            4555555544  36999999999863222211     122233332111111           24689999999776666


Q ss_pred             eecCCCCcceEEEccCCCEEEEEe---cCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCCCcce
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAE---TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS  180 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~---~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~  180 (268)
                      +....    +.+++++|++||+++   .....|++.+++|..   .+.+..-..    ++++++|+ ||.+..+.. .  
T Consensus       103 l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~~g~~iy~t~~g~~-~--  168 (302)
T 3s25_A          103 LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNTSDRYFYYNNPKNG-Q--  168 (302)
T ss_dssp             EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEEETTEEEEECTTTC-C--
T ss_pred             eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeEECCEEEEEeCCCc-e--
Confidence            65442    458899999999998   677899999999742   344433221    34455553 555444222 2  


Q ss_pred             eeeEeeCccceeeeecccc-ceeeee-------eccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436          181 KLVLSFPWIGNVLIKLPID-IVKIHS-------SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLW  252 (268)
Q Consensus       181 ~~v~~~~~~g~~l~~i~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly  252 (268)
                        |.+.+..|.-..++... ...+..       .......  ..+.+.+.+|.-..++.+.  . ++   .+...+++||
T Consensus       169 --Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~~--~~I~~~~ldG~~~~~Lt~~--~-~~---~~~~~g~~Iy  238 (302)
T 3s25_A          169 --LYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRD--NAIVHVNINNPNPVVLTEA--N-IE---HYNVYGSLIF  238 (302)
T ss_dssp             --EEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGGT--TEEEEECSSSCCCEECSCS--C-EE---EEEEETTEEE
T ss_pred             --EEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCCC--cEEEEEECCCCCeEEEeCC--C-cc---eEEECCCEEE
Confidence              32332222221121111 000000       0000011  2466777776655555431  1 22   3566788999


Q ss_pred             Ee-eCCCCeEEEEeCC
Q 024436          253 IG-SVNMPYAGLYNYS  267 (268)
Q Consensus       253 v~-s~~~~~v~~~~~~  267 (268)
                      .+ ....+.|.+++++
T Consensus       239 ~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          239 YQRGGDNPALCVVKND  254 (302)
T ss_dssp             EEECSSSCEEEEEETT
T ss_pred             EEECCCCcEEEEEECC
Confidence            86 4456888888765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.0005  Score=61.94  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CcceEEEEeCC--CCeEEEee---cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc--eeEEEeCCCCCCce
Q 024436           88 KTGRLMKYDPA--TKQVTVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQLPGFPDNI  160 (268)
Q Consensus        88 ~~g~v~~~d~~--~~~~~~~~---~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~~l~g~Pdgi  160 (268)
                      ..+.|..||..  +++.....   .....++.++|+|||++|+++. ..+.|+.|++.......  ...+..-.+....+
T Consensus       123 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~  201 (450)
T 2vdu_B          123 SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV  201 (450)
T ss_dssp             GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred             CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-CCCcEEEEecCCcccccccceeeecccCceEEE
Confidence            44556555554  45433332   2335578999999999887775 47889999987533211  11121112346778


Q ss_pred             EEcCC---CCEEEEEecCC
Q 024436          161 KRSPR---GGFWVGIHSRR  176 (268)
Q Consensus       161 a~d~d---G~l~va~~~~~  176 (268)
                      ++.++   |+++++....+
T Consensus       202 ~~sp~~~~~~~l~s~~~d~  220 (450)
T 2vdu_B          202 HLIKDSDGHQFIITSDRDE  220 (450)
T ss_dssp             EEEECTTSCEEEEEEETTS
T ss_pred             EEcCCCCCCcEEEEEcCCC
Confidence            99998   86666554443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.21  E-value=0.00053  Score=64.55  Aligned_cols=155  Identities=11%  Similarity=0.160  Sum_probs=94.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCe--EEEEE---------EcCCCCCeeEEEeec-CCcceEEEEeCCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRR--WLHFA---------RTSPNRNHISVILSG-DKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~--~~~~~---------~~~~~~~~~~~~~~~-~~~g~v~~~d~~~~  100 (268)
                      ..-..++++|||++++++..|+.|..|+.. ++.  ...+.         ..++++.++.....+ ...+.|+.+|.. .
T Consensus        60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~  138 (611)
T 1nr0_A           60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-T  138 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-C
T ss_pred             CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-C
Confidence            456789999999999999999999999863 221  11111         112333333322111 123577777753 2


Q ss_pred             eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcce
Q 024436          101 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  180 (268)
Q Consensus       101 ~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~  180 (268)
                      ....+..+-...+.++|+|+++..+++.+..+.|..|+....+  ....+..-.+....+++.|||+++++....+.   
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fspdg~~las~s~D~~---  213 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT---  213 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC---
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECCCCCEEEEEECCCc---
Confidence            2333444445668999999997667788888999999975311  01112111234568899999998777665553   


Q ss_pred             eeeEeeC-ccceeeeec
Q 024436          181 KLVLSFP-WIGNVLIKL  196 (268)
Q Consensus       181 ~~v~~~~-~~g~~l~~i  196 (268)
                        |..+. .+++.+..+
T Consensus       214 --i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          214 --IVLYNGVDGTKTGVF  228 (611)
T ss_dssp             --EEEEETTTCCEEEEC
T ss_pred             --EEEEECCCCcEeeee
Confidence              43343 445555444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.20  E-value=8.3e-05  Score=64.86  Aligned_cols=138  Identities=14%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE------------EcCCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA------------RTSPNRNHISVILSGDKTGRLMKYDPATKQ-  101 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  101 (268)
                      .-.+++++|+|++++++..++.|..|+.++..+....            ...++++++.   ....++.|..+|..+++ 
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~---s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIV---TCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEE---EEETTSSEEEC------C
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEE---EEeCCCeEEEEEcCCCCc
Confidence            5788999999998888888888888876543111111            1123333332   22345677777776554 


Q ss_pred             ---EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC-CceeEEEe-CCCCCCceEEcCCCCEEEEEecCC
Q 024436          102 ---VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       102 ---~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~-g~~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                         ...+...-...+.++|+||++.|+.+ +..+.|..|+++.+.. .....+.. ..+....+++.++|+++++....+
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence               33344445566899999999866544 5678899999875321 01222322 234467899999998766655544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.20  E-value=0.00053  Score=60.91  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE----e---CCCCCCceEEcCCC-CEEEEEecCC
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA----Q---LPGFPDNIKRSPRG-GFWVGIHSRR  176 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~----~---l~g~Pdgia~d~dG-~l~va~~~~~  176 (268)
                      -...+.++|+||++.|..+  ..+.|..|++.... .....+.    .   ..+....++++++| +++++....+
T Consensus       177 ~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA--DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE--CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CcceEEEEEcCCCCEEEEe--CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence            3446789999999866554  58999999987210 0011110    1   12346688999998 7777665554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00014  Score=63.97  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             CCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCe-------EEEEE------------EcCCC-CCeeEEEeecCCcceE
Q 024436           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRR-------WLHFA------------RTSPN-RNHISVILSGDKTGRL   92 (268)
Q Consensus        34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~-------~~~~~------------~~~~~-~~~~~~~~~~~~~g~v   92 (268)
                      ....+++++|+ +++++++..++.|..|+.....       .....            ...++ ..+   +......+.|
T Consensus       114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~~~~~dg~v  190 (416)
T 2pm9_A          114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV---FASAGSSNFA  190 (416)
T ss_dssp             SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE---EEEESSSSCE
T ss_pred             cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE---EEEEcCCCCE
Confidence            46789999998 8989999899999998865321       11110            01122 111   2233567889


Q ss_pred             EEEeCCCCeEEEeecC-------CCCcceEEEccCCCEEEEEecCCc---EEEEEEccCCCCCceeEEE-eCCCCCCceE
Q 024436           93 MKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVA-QLPGFPDNIK  161 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~-------~~~pnGia~spdg~~lyva~~~~~---~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia  161 (268)
                      ..+|..+++.......       ....+.++|+|+++.++++....+   .|..|++..... ....+. .-.+....++
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~  269 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLD  269 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEE
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEE
Confidence            9999887765544432       345789999999855666666666   999999875311 111121 1123466889


Q ss_pred             EcC-CCCEEEEEecCCCcceeeeEeeC-ccceeeeecc
Q 024436          162 RSP-RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  197 (268)
Q Consensus       162 ~d~-dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~  197 (268)
                      +.+ +|+++++....+.     |..+. ..++.+..+.
T Consensus       270 ~s~~~~~~l~s~~~dg~-----v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          270 WCHQDEHLLLSSGRDNT-----VLLWNPESAEQLSQFP  302 (416)
T ss_dssp             ECSSCSSCEEEEESSSE-----EEEECSSSCCEEEEEE
T ss_pred             eCCCCCCeEEEEeCCCC-----EEEeeCCCCccceeec
Confidence            998 7876666655442     44443 4455555554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.18  E-value=0.00014  Score=65.45  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=91.0

Q ss_pred             CCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC------------CCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS------------PNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ..-.+++|+| ++++++++..|+.|..|+..+.....+....            +++.+   +..+...|.|..+|.++.
T Consensus       165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~g~~dg~i~~wd~~~~  241 (435)
T 4e54_B          165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM---VVTGDNVGNVILLNMDGK  241 (435)
T ss_dssp             CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE---EEEECSSSBEEEEESSSC
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE---EEEEeCCCcEeeeccCcc
Confidence            4568999998 7889999999999999998876443332211            11122   224456788888888755


Q ss_pred             eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .+..+...-..-+.++|+|+++.++++.+..+.|..|++.....  ...+...   ......++++++|+++++....+
T Consensus       242 ~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--cceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence            44444444455689999999987888888889999999874321  1111111   12245678899998766655444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=0.0015  Score=58.74  Aligned_cols=151  Identities=15%  Similarity=0.137  Sum_probs=92.5

Q ss_pred             CcceEEECCCCCEE-EEEeCCCeEEEEeCC---CCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCC
Q 024436           35 GPESLAFDALGEGP-YTGVSDGRIIKWHQD---QRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        35 ~P~gia~~~dG~~l-~~~~~~g~I~~~~~~---g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      ...+++++|+|+.+ +++..++.|..|+..   ++....+..           ..+++.++.   .....|.++.++..+
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~---~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI---IADKFGDVYSIDINS  180 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE---EEETTSEEEEEETTS
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE---EEeCCCcEEEEecCC
Confidence            47899999999986 677788998888754   433333221           123333332   224467888888765


Q ss_pred             CeEE-----EeecCCCCcceEEEccC---CCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEE
Q 024436          100 KQVT-----VLLGNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       100 ~~~~-----~~~~~~~~pnGia~spd---g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~v  170 (268)
                      ++..     .+.......+.++|+||   +++| ++....+.|..|++..+..  ...+.. -.+....+++. +|++++
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~s~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-ITSDRDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-EEEETTSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEE-EEEcCCCcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEE
Confidence            5432     23334455688999999   8655 4555678999999875321  222221 12356789999 998777


Q ss_pred             EEecCCCcceeeeEeeC-ccceeeeecc
Q 024436          171 GIHSRRKGISKLVLSFP-WIGNVLIKLP  197 (268)
Q Consensus       171 a~~~~~~~~~~~v~~~~-~~g~~l~~i~  197 (268)
                      +....+.     |..+. ..++.+..+.
T Consensus       257 s~~~d~~-----v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          257 SAGGDDK-----IFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEESSSE-----EEEEETTTCCEEEEEE
T ss_pred             EEeCCCe-----EEEEECCCCcEeeeec
Confidence            6655442     33332 4566555554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.18  E-value=0.00036  Score=61.04  Aligned_cols=136  Identities=16%  Similarity=0.150  Sum_probs=88.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEc---------CC--CCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFART---------SP--NRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~---------~~--~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ...++++.|++..++++..|+.|..|+.. ++....+...         .+  .+++   +..+..++.|..+|..+++.
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~---l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT---FVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE---EEEEETTSCEEEEETTTCCE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE---EEEEeCCCeEEEEECCCCcE
Confidence            45688999999999999999999999875 3333333211         11  1122   22344678899999887765


Q ss_pred             EEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecCC
Q 024436          103 TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       103 ~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .... ..-...+.++|+|+++.| ++-+..+.|..|++....  ....+...  ......+++.++|+++++....+
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGDAF-ASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEecCCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCC
Confidence            4443 344556899999999855 566678999999986421  11222111  11245788999999777666554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.17  E-value=0.0015  Score=58.08  Aligned_cols=235  Identities=11%  Similarity=0.132  Sum_probs=125.4

Q ss_pred             CCEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCC----C---eEEEEE--------EcCCCCCeeEEEeec
Q 024436           23 QGVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQ----R---RWLHFA--------RTSPNRNHISVILSG   86 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g----~---~~~~~~--------~~~~~~~~~~~~~~~   86 (268)
                      +.+..+..+.-....+++++| +|++++++..||.|..|+...    .   ....+.        ...++..++.   ..
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---s~  129 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA---VS  129 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE---EE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE---EE
Confidence            355666455445789999999 999999999999999987532    1   011111        1123333222   22


Q ss_pred             CCcceEEEEeCC---CCeEEEee-----------c--CCCCcceEE--EccCCCEEEEEecCCcEEEEEEccCCCCCcee
Q 024436           87 DKTGRLMKYDPA---TKQVTVLL-----------G--NLSFPNGVA--LSEDGNYILLAETTSCRILRYWLKTSKAGTIE  148 (268)
Q Consensus        87 ~~~g~v~~~d~~---~~~~~~~~-----------~--~~~~pnGia--~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~  148 (268)
                      ..++.|..+|.+   +++.....           .  .......++  +++|++ ++++.+..+.|..|++.....  ..
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~  206 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLER--LQ  206 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCE--EE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCee--eE
Confidence            344555555442   23222111           0  223334455  557886 445666789999999975321  22


Q ss_pred             EEEe--CCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeecccc-ceeeeee--ccccCCCc--------
Q 024436          149 IVAQ--LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID-IVKIHSS--LVKLSGNG--------  214 (268)
Q Consensus       149 ~~~~--l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~-~~~~~~~--~~~~~~~~--------  214 (268)
                      .+..  -.+....++++++|+++++....+.     |..+. ..++.+..+..+ ...++++  .+..++..        
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGI-----IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSC-----EEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCe-----EEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence            2222  1245678999999987776655543     33332 346666555422 1222222  01111220        


Q ss_pred             -EEEEEECC-CCCEEEEEEcCCCCc----------------------eeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          215 -GMAMRISE-QGNVLEILEEIGRKM----------------------WRSISEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       215 -~~~~~~~~-~G~~~~~~~~~~g~~----------------------~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                       +.+...+. .++.+..+...++..                      ...++.+...+++++++...+..|.+.++++
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence             33333443 255555555332111                      1124445555778777777888888888753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.16  E-value=0.00031  Score=61.72  Aligned_cols=219  Identities=10%  Similarity=0.061  Sum_probs=119.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC----C-eEEEEEE---------cCCC-CCeeEEEeecCCcceEEEEeCCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ----R-RWLHFAR---------TSPN-RNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g----~-~~~~~~~---------~~~~-~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      ...+++++|+|++++++..+|.|..|+.+.    . ....+..         ..++ ..++   .....++.|..+|..+
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l---~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVL---ASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBE---EEECSSSCEEBCBTTT
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEE---EEEcCCCeEEEEECCC
Confidence            567899999999999999999999998764    2 2222111         1122 2222   2334567888888876


Q ss_pred             Ce------EEE-e---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC------CCCCCceEEc
Q 024436          100 KQ------VTV-L---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL------PGFPDNIKRS  163 (268)
Q Consensus       100 ~~------~~~-~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l------~g~Pdgia~d  163 (268)
                      ++      ... +   .......+.++|+|++..++++....+.|..|++..+..  ...+...      ......++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEeccccccccCCceEEEEEC
Confidence            54      111 1   223345679999999444667777889999999875321  1112111      2346789999


Q ss_pred             CCC-CEEEEEecCCC--cceeeeEeeC-ccc-eeeeecc-ccceeeeee-ccc--------cCCCcEEEEEECC-CCCEE
Q 024436          164 PRG-GFWVGIHSRRK--GISKLVLSFP-WIG-NVLIKLP-IDIVKIHSS-LVK--------LSGNGGMAMRISE-QGNVL  227 (268)
Q Consensus       164 ~dG-~l~va~~~~~~--~~~~~v~~~~-~~g-~~l~~i~-~~~~~~~~~-~~~--------~~~~~~~~~~~~~-~G~~~  227 (268)
                      ++| +++++....+.  .    |..+. ..+ +.+..+. .....+.++ +.+        .... +.+...+. .++.+
T Consensus       224 ~~~~~~l~~~~~d~~~~~----i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~~  298 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPS----ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQL  298 (416)
T ss_dssp             SSCTTEEEEEECCSSSCC----CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCEE
T ss_pred             CCCCCEEEEEECCCCCce----EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCccc
Confidence            998 56655544420  1    22222 121 2222222 111111111 100        0111 33444454 36666


Q ss_pred             EEEEcCCCCceeceEEEEE-eCC-EEEEeeCCCCeEEEEeCC
Q 024436          228 EILEEIGRKMWRSISEVEE-KDG-NLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       228 ~~~~~~~g~~~~~~s~~~~-~~g-~Lyv~s~~~~~v~~~~~~  267 (268)
                      ..+....+.    ++.+.. .++ +++++...+..|.+.+++
T Consensus       299 ~~~~~~~~~----v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          299 SQFPARGNW----CFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             EEEECSSSC----CCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             eeecCCCCc----eEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            666654322    233333 344 677777778888888765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.13  E-value=0.0014  Score=56.38  Aligned_cols=131  Identities=13%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             CCCcceEEECCCCCEEEEEe---------CCCeEEEEeCCCCeEEEE-----EEcCCCCCeeEEEeecC--CcceEEEEe
Q 024436           33 AIGPESLAFDALGEGPYTGV---------SDGRIIKWHQDQRRWLHF-----ARTSPNRNHISVILSGD--KTGRLMKYD   96 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~---------~~g~I~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~--~~g~v~~~d   96 (268)
                      +..+.++++  ||+.++...         .++.|+.++.++.....+     ...+|++.++.-.....  ....|+.++
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEEESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEcccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            345567777  887664421         156788888765432222     12356665543222222  345799999


Q ss_pred             CCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--------------------------CcEEEEEEccCCCCCce-eE
Q 024436           97 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--------------------------SCRILRYWLKTSKAGTI-EI  149 (268)
Q Consensus        97 ~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--------------------------~~~I~~~~~~~~~~g~~-~~  149 (268)
                      .++++.+.+...-. ...++|+|||+.|+++...                          ..+|++++++++.   . ..
T Consensus        92 ~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---~~~~  167 (347)
T 2gop_A           92 LETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---VIEE  167 (347)
T ss_dssp             TTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---EEEE
T ss_pred             CCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---EEee
Confidence            98888776654333 7899999999988887532                          3679999987532   2 33


Q ss_pred             EEeCCCCCCceEEcCCCCEEEEE
Q 024436          150 VAQLPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       150 ~~~l~g~Pdgia~d~dG~l~va~  172 (268)
                      +.. + ....+++.+|| ++++.
T Consensus       168 l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          168 FEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             EEE-E-TTCEEEEETTE-EEEEE
T ss_pred             ecC-C-CcccccCCCCe-EEEEE
Confidence            333 3 56788999999 65544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.13  E-value=0.00055  Score=59.70  Aligned_cols=131  Identities=11%  Similarity=0.021  Sum_probs=80.2

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEE---------------------E--------e----e
Q 024436           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISV---------------------I--------L----S   85 (268)
Q Consensus        39 ia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~---------------------~--------~----~   85 (268)
                      ++++|||+.++....++.|+.++.++.....+......  +...                     +        +    .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            78899999887777778899999865432222211100  1000                     0        0    0


Q ss_pred             cCCcceEEEEeCCCCeEEEeecCCCCcceEEEcc-CCCEEEEE-ecCC----cEEEEEEccCCCCCceeEEEe-CCC-CC
Q 024436           86 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE-DGNYILLA-ETTS----CRILRYWLKTSKAGTIEIVAQ-LPG-FP  157 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~sp-dg~~lyva-~~~~----~~I~~~~~~~~~~g~~~~~~~-l~g-~P  157 (268)
                      ......|+.+|.++++.+.+.........++|+| ||+.|+++ +...    .+|+.++++++.   ...+.. .++ .+
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~  240 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESC  240 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEE
T ss_pred             CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccc
Confidence            1345689999998888877766555677899999 78756554 4222    479999987532   122211 111 24


Q ss_pred             CceEEcCCCC-EEEEEec
Q 024436          158 DNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       158 dgia~d~dG~-l~va~~~  174 (268)
                      ..+++++||+ |+.+...
T Consensus       241 ~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             EEEEECTTSSCEEEEEEE
T ss_pred             cceEECCCCCEEEEEecC
Confidence            4578999997 5555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.09  E-value=0.00012  Score=67.17  Aligned_cols=146  Identities=12%  Similarity=0.097  Sum_probs=85.3

Q ss_pred             EEEEecCCCCCcceEEECCCCC--EEEEEeCCCeEEEEeCCCCeE-EEEEEc-----C------CCC-------------
Q 024436           25 VVQYQIEGAIGPESLAFDALGE--GPYTGVSDGRIIKWHQDQRRW-LHFART-----S------PNR-------------   77 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~--~l~~~~~~g~I~~~~~~g~~~-~~~~~~-----~------~~~-------------   77 (268)
                      +++++-+ +..|.+|++.|||+  +|++ ...|+|++++++|... ..+...     .      ..+             
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            5556544 77899999999995  5555 5679999998776420 111111     0      011             


Q ss_pred             CeeEEEeecCC----------cceEEEEeCCCC--------eEEEee-----cCCCCcceEEEccCCCEEEEEecC----
Q 024436           78 NHISVILSGDK----------TGRLMKYDPATK--------QVTVLL-----GNLSFPNGVALSEDGNYILLAETT----  130 (268)
Q Consensus        78 ~~~~~~~~~~~----------~g~v~~~d~~~~--------~~~~~~-----~~~~~pnGia~spdg~~lyva~~~----  130 (268)
                      .+++...+...          ..+|.|+....+        +.+++.     ...++...|+|+|||+ |||+-..    
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~  162 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMIT  162 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCC
Confidence            13333332211          136766654311        122322     2335567899999995 9998432    


Q ss_pred             -------------CcEEEEEEccCC------CC-------C----ceeEEEeCCCCCCceEEcCC-----CCE--EEEEe
Q 024436          131 -------------SCRILRYWLKTS------KA-------G----TIEIVAQLPGFPDNIKRSPR-----GGF--WVGIH  173 (268)
Q Consensus       131 -------------~~~I~~~~~~~~------~~-------g----~~~~~~~l~g~Pdgia~d~d-----G~l--~va~~  173 (268)
                                   .++|+|+++++.      .+       +    ..++++.--..|.|+++|++     |+|  |.++.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence                         368999999873      10       1    23556542236999999997     655  44554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.09  E-value=0.00061  Score=60.82  Aligned_cols=104  Identities=16%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..|+.|..|+..+.. ...+.         ...+++.++   ..+..++.|..+|..+++..
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l---~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI---VSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEE---EEEETTSEEEEEETTTCCEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEE---EEEeCCCeEEEEECCCCcEE
Confidence            356889999999999999999999999876532 11110         112333332   23446678888888777643


Q ss_pred             -EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          104 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       104 -~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                       .+...-...+.++++|||+ ++++.+..+.|..|++..
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence             3444455668899999998 445666788999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00089  Score=57.91  Aligned_cols=144  Identities=9%  Similarity=0.026  Sum_probs=89.0

Q ss_pred             EEEEecCCCCCcceEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEE-----------cCCCCCeeEEEeecCCcce
Q 024436           25 VVQYQIEGAIGPESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFAR-----------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~--dG~~l~~~~~~g~I~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~   91 (268)
                      ++.+..+.-....+++++|  +|++++++..|+.|..|+...........           ..+++.++   ..+..++.
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l---asg~~dg~  193 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL---ALYSPDGI  193 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE---EEECTTSC
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE---EEEcCCCE
Confidence            4555555434578999999  99999999999999999875433222111           11222222   23456788


Q ss_pred             EEEEeCCCCeEE--Eeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC-CceeEEEeCCCCCC---ceEEcC
Q 024436           92 LMKYDPATKQVT--VLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPD---NIKRSP  164 (268)
Q Consensus        92 v~~~d~~~~~~~--~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~-g~~~~~~~l~g~Pd---gia~d~  164 (268)
                      |..+|..+++..  .+.. +....+.++|+|||++|..+. . +.|..|++..... .....+. ....+-   .+++++
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYT-IPEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCB-C-----CCEEEEECT
T ss_pred             EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeecccc-cccccccceEEEECC
Confidence            888888876643  3333 345668999999998776665 3 4999999975321 1111110 011232   499999


Q ss_pred             CCCEEEEEec
Q 024436          165 RGGFWVGIHS  174 (268)
Q Consensus       165 dG~l~va~~~  174 (268)
                      +|+++++...
T Consensus       271 ~g~~l~~~s~  280 (343)
T 3lrv_A          271 SGKNMIAYSN  280 (343)
T ss_dssp             TSSEEEEEET
T ss_pred             CCCEEEEecC
Confidence            9997777555

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.07  E-value=0.0018  Score=55.98  Aligned_cols=137  Identities=11%  Similarity=0.024  Sum_probs=84.7

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..-..++++|++.+++++..|+.|..|+.. ++....+..         ..++..++.   .....+.|..+|..+....
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~---s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL---SAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE---EEETTSCEEEEESSSCEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE---EEcCCCEEEEEeccCCcee
Confidence            356789999999999999999999999875 333333221         123333332   2334567777777633332


Q ss_pred             Eee---cCCCCcceEEEccCCC---------EEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          104 VLL---GNLSFPNGVALSEDGN---------YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       104 ~~~---~~~~~pnGia~spdg~---------~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      ...   ......+.++|+|+++         .++++-...+.|..|+...   .....+..-.+....++++++|+++++
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEEE
Confidence            222   2233457899999872         2556667789999999542   111222222234567899999987776


Q ss_pred             EecCC
Q 024436          172 IHSRR  176 (268)
Q Consensus       172 ~~~~~  176 (268)
                      ....+
T Consensus       231 gs~dg  235 (343)
T 2xzm_R          231 GGKDK  235 (343)
T ss_dssp             EETTC
T ss_pred             EcCCC
Confidence            65554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.07  E-value=0.00025  Score=62.17  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ...+++++|+|++++++..++.|..|+..... ...+..         ..+.....  +.....++.|..+|..+++...
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~--~~s~~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI--FLSCGEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC--EEEEETTSCEEECCTTSSSCBC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce--eeeeccCCceEEEECCCCceee
Confidence            46789999999999999999999999876442 222211         11222111  1123356778888887665433


Q ss_pred             ee---cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCC
Q 024436          105 LL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       105 ~~---~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      ..   .....++.++|+|++..++++....+.|..|++..+..  ...+..-.+....+++.++|. ++++....+
T Consensus       219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence            22   22344678999999766777777788999999875321  222221122346789999884 555444433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.07  E-value=0.00032  Score=66.25  Aligned_cols=135  Identities=11%  Similarity=0.005  Sum_probs=81.8

Q ss_pred             cceEEECCCCCEEEEEeCC----------CeEEEEeCCC------CeEEEEE----------EcCCCCCeeEEEeecC--
Q 024436           36 PESLAFDALGEGPYTGVSD----------GRIIKWHQDQ------RRWLHFA----------RTSPNRNHISVILSGD--   87 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~----------g~I~~~~~~g------~~~~~~~----------~~~~~~~~~~~~~~~~--   87 (268)
                      ..+++++|||+.+++...+          .+|++++.++      .....+.          ..+|++.++.-.....  
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~  211 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR  211 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence            5678999999988765544          5899998876      3222211          1245555443222222  


Q ss_pred             ---CcceEEEEeCC-CC---eEEEeecC-CCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCC---
Q 024436           88 ---KTGRLMKYDPA-TK---QVTVLLGN-LSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLP---  154 (268)
Q Consensus        88 ---~~g~v~~~d~~-~~---~~~~~~~~-~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~---  154 (268)
                         ....|+.+|.+ ++   +.+.+..+ ......++|+|||+ +|++....+  +|++++++++.   ...+....   
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~  287 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEF  287 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBS
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccc
Confidence               23579999987 46   56666544 35677899999999 555544445  88888875432   22221110   


Q ss_pred             C----C--CCceEEcCCCCEEEEEec
Q 024436          155 G----F--PDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus       155 g----~--Pdgia~d~dG~l~va~~~  174 (268)
                      .    .  ...+++.++|++++....
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc
Confidence            0    1  346788888887776654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.06  E-value=0.0018  Score=61.69  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=94.7

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..|+.|..|+.... ....+..         .++++.++   .+...++.|..+|..+....
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l---~s~s~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI---VSASRDRTIKLWNTLGECKY  507 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE---EEEETTSCEEEECTTSCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEE---EEEeCCCEEEEEECCCCcce
Confidence            45678999999999999999999999987543 2222211         12333322   23345677888887643333


Q ss_pred             Eeec----CCCCcceEEEccCCC-EEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCc
Q 024436          104 VLLG----NLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG  178 (268)
Q Consensus       104 ~~~~----~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~  178 (268)
                      .+..    +...-+.++|+|++. .++++.+..+.|..|++.....  ...+..-.+....++++++|+++++....+. 
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-  584 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-  584 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSB-
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-
Confidence            3322    223357899999873 3566777889999999875321  1222112234668999999998777665543 


Q ss_pred             ceeeeEee-Cccceeeeecc
Q 024436          179 ISKLVLSF-PWIGNVLIKLP  197 (268)
Q Consensus       179 ~~~~v~~~-~~~g~~l~~i~  197 (268)
                          |..+ ...++.+..+.
T Consensus       585 ----i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          585 ----VLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             ----CEEEETTTTEEEECCB
T ss_pred             ----EEEEECCCCceEEEec
Confidence                3333 24555555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.05  E-value=0.0022  Score=60.95  Aligned_cols=90  Identities=10%  Similarity=-0.014  Sum_probs=58.2

Q ss_pred             CcceEEECCCCCEEEEEeCC---------CeEEEEeCCCCeEEEEE------------EcCCCCCeeEEEeecCCcceEE
Q 024436           35 GPESLAFDALGEGPYTGVSD---------GRIIKWHQDQRRWLHFA------------RTSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~---------g~I~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      ...+++++|||+.+++...+         +.|+.++.++.....+.            ..+|++.++. +..   .+.|+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la-~~~---~~~i~  137 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI-FIF---ENNIY  137 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE-EEE---TTEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEE-EEE---CCeEE
Confidence            37899999999988776653         77888887654222221            1133443332 212   26899


Q ss_pred             EEeCCCCeEEEeecCCC-------------------CcceEEEccCCCEEEEEe
Q 024436           94 KYDPATKQVTVLLGNLS-------------------FPNGVALSEDGNYILLAE  128 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~-------------------~pnGia~spdg~~lyva~  128 (268)
                      .+|.++++...+.....                   ...+++|||||++|+++.
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            99998777666543311                   236899999999887765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.05  E-value=0.00026  Score=68.84  Aligned_cols=130  Identities=14%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC-C---CCCeeEEEeecCC-------cceEEEEeCCCCeEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-P---NRNHISVILSGDK-------TGRLMKYDPATKQVT  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~-~---~~~~~~~~~~~~~-------~g~v~~~d~~~~~~~  103 (268)
                      ...+++.+++|++++. .. +.+.+++++...+..+.... +   ...++..+..+..       .+.|+++|+++++. 
T Consensus       453 ~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-  529 (795)
T 4a2l_A          453 NVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI-  529 (795)
T ss_dssp             CEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE-
T ss_pred             eeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE-
Confidence            4678899999995554 44 56889998765444432110 0   0112222222110       14578888876665 


Q ss_pred             Eee---c--CC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCC----ceEEcCCCCEEEEE
Q 024436          104 VLL---G--NL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD----NIKRSPRGGFWVGI  172 (268)
Q Consensus       104 ~~~---~--~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd----gia~d~dG~l~va~  172 (268)
                      ...   .  ++  ...+.|..+++|+ ||++...  .|++|+.++.   ....+....|.|+    +|+.|++|+||++.
T Consensus       530 ~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~--Gl~~~d~~~~---~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          530 QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE--GFYCFNEKDK---QIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS--CEEEEETTTT---EEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC--CceeECCCCC---cEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence            322   1  11  2346788899996 8887543  7899997642   2333332234554    48889999999998


Q ss_pred             e
Q 024436          173 H  173 (268)
Q Consensus       173 ~  173 (268)
                      .
T Consensus       604 ~  604 (795)
T 4a2l_A          604 N  604 (795)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.05  E-value=0.0011  Score=66.45  Aligned_cols=96  Identities=11%  Similarity=0.012  Sum_probs=68.7

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEeec-------CCcceEEEEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVILSG-------DKTGRLMKYD   96 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~-------~~~g~v~~~d   96 (268)
                      ..+..++++|||+.+++...++.|+.++.++.......          ..+|++.++......       ...+.|+.+|
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            46789999999999988888999999998654333222          113444544322221       2346899999


Q ss_pred             CCCCeEEEeecCCCCcceEEEccCCCEEEEEec
Q 024436           97 PATKQVTVLLGNLSFPNGVALSEDGNYILLAET  129 (268)
Q Consensus        97 ~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~  129 (268)
                      .++++...+.........++|+|||++||++..
T Consensus       459 ~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          459 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            998887777666666788999999999988754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.04  E-value=0.0016  Score=58.07  Aligned_cols=145  Identities=10%  Similarity=0.066  Sum_probs=91.1

Q ss_pred             CCCCcceEEECCCCCEEEEEeCC---------------CeEEEEeCCCC--eEE-EEE----------------Ec--CC
Q 024436           32 GAIGPESLAFDALGEGPYTGVSD---------------GRIIKWHQDQR--RWL-HFA----------------RT--SP   75 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~---------------g~I~~~~~~g~--~~~-~~~----------------~~--~~   75 (268)
                      ++....++.+|+.|++++.+.+.               -+|+.+|....  .+. .+.                ..  .+
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            46788999999999988887641               25677776543  222 221                11  11


Q ss_pred             C--CCeeEEEeecCCcceEEEEeCCCCeEEEeec--------------C-----CCCcceEEEccC----CCEEEEEecC
Q 024436           76 N--RNHISVILSGDKTGRLMKYDPATKQVTVLLG--------------N-----LSFPNGVALSED----GNYILLAETT  130 (268)
Q Consensus        76 ~--~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------------~-----~~~pnGia~spd----g~~lyva~~~  130 (268)
                      .  ..-...++++.....|.++|..+++..++..              +     ....+||++||+    +++||+.-..
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence            1  1112334455566788889888776554431              1     124568999999    8999999999


Q ss_pred             CcEEEEEEcc---CCCC-CceeEEEeCCCCCC--ceEEc-CCCCEEEEEecCC
Q 024436          131 SCRILRYWLK---TSKA-GTIEIVAQLPGFPD--NIKRS-PRGGFWVGIHSRR  176 (268)
Q Consensus       131 ~~~I~~~~~~---~~~~-g~~~~~~~l~g~Pd--gia~d-~dG~l~va~~~~~  176 (268)
                      +.++++...+   ...+ ...+.+.+-+...+  ++++| .+|+||.+....+
T Consensus       245 s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~  297 (381)
T 3q6k_A          245 AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTK  297 (381)
T ss_dssp             CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred             CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCC
Confidence            8999999854   2222 22333333211245  56786 7899999998776

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.04  E-value=0.00027  Score=62.52  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=93.3

Q ss_pred             CEEEEe-cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEc-----------CCCCCeeEEEeecCCcc
Q 024436           24 GVVQYQ-IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFART-----------SPNRNHISVILSGDKTG   90 (268)
Q Consensus        24 ~~~~i~-~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~-----------~~~~~~~~~~~~~~~~g   90 (268)
                      .+..+. .+......+++++|+|++++++..++.|..|+..... ...+...           .+++.++..-+.....+
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence            444442 2223467899999999999999999999999976442 2222111           11112222111114678


Q ss_pred             eEEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCC
Q 024436           91 RLMKYDPATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPR  165 (268)
Q Consensus        91 ~v~~~d~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~d  165 (268)
                      .|..+|..+++.   ............++|+||++.||++....+.|..|++..+.. ....+...  .+...++++.++
T Consensus       246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPK  324 (402)
T ss_dssp             EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCG
T ss_pred             eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEecc
Confidence            899998875432   122234455788999999999999988889999999985331 02233222  245788999998


Q ss_pred             CCEEE
Q 024436          166 GGFWV  170 (268)
Q Consensus       166 G~l~v  170 (268)
                      |.+.+
T Consensus       325 ~~~~~  329 (402)
T 2aq5_A          325 RGLEV  329 (402)
T ss_dssp             GGSCG
T ss_pred             cccce
Confidence            87654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.03  E-value=0.0013  Score=61.84  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=43.7

Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..+.++|+|||++| ++.+..+.|..|+++++....... ..-++....+++.|||+++++....+
T Consensus       450 ~v~~va~spdg~~l-asgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          450 NSSCVALSNDKQFV-AVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             CEEEEEECTTSCEE-EEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CceEEEEeCCCCEE-EEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence            45789999999855 555677899999987532111111 12234567899999999877766555

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.02  E-value=0.00074  Score=67.70  Aligned_cols=128  Identities=14%  Similarity=0.113  Sum_probs=83.8

Q ss_pred             CcceEEEC-CCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEeecCCcceEE-EEeCCCCeE
Q 024436           35 GPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVILSGDKTGRLM-KYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~-~dG~~l~~~~~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~  102 (268)
                      .+.+++++ |||+.+++.. ++.|+.++.++.....+.          ..+ ++..+. +.. . .+.++ .++.++++.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~-~~s-~-~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFI-HGT-R-EGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEE-EEE-T-TEEEEEEEETTTCCE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEE-EEE-C-CCceEEEEECCCCCc
Confidence            47899999 9999776655 788888876644322211          011 111111 112 2 56889 899887777


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEE
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va  171 (268)
                      +.+.........++|+|||++|+++. ..+.|+.|+++++.   ...+. ...+....++++|||+.++.
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             eEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCc---eEEeccCCCCCccceEECCCCCeEEE
Confidence            76664446678999999999887665 45799999997532   33333 22334578999999985443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.02  E-value=4.4e-05  Score=69.94  Aligned_cols=71  Identities=23%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---------CCCCceEEcC----CC
Q 024436          100 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---------GFPDNIKRSP----RG  166 (268)
Q Consensus       100 ~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---------g~Pdgia~d~----dG  166 (268)
                      -+++++++++..|.+|+|.|||+ |||++...++|++++.+++   ..+.+..++         +.+-||+++|    +|
T Consensus        17 f~~~~~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g---~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           17 FDKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             eEEEEEECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCC---cEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            46778888999999999999996 9999988789999986532   234444332         2345999999    67


Q ss_pred             CEEEEEec
Q 024436          167 GFWVGIHS  174 (268)
Q Consensus       167 ~l~va~~~  174 (268)
                      .||++...
T Consensus        93 ~lYv~~s~  100 (454)
T 1cru_A           93 YIYISGTF  100 (454)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            89998864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.01  E-value=0.00041  Score=59.20  Aligned_cols=134  Identities=12%  Similarity=0.038  Sum_probs=86.6

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe----EEEEEEc---------CCCCC-eeEEEeecCCcceEEEEeC-
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR----WLHFART---------SPNRN-HISVILSGDKTGRLMKYDP-   97 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~----~~~~~~~---------~~~~~-~~~~~~~~~~~g~v~~~d~-   97 (268)
                      -....+++++|+|++++++..++.|..|+.+...    .......         .++.. ++   +.+...+.|..+|. 
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l---~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI---YVGTVQGEILKVDLI   87 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE---EEEETTSCEEEECSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEE---EEEcCCCeEEEEEec
Confidence            3468899999999999999999999888754322    2221111         12222 22   23345688999998 


Q ss_pred             CCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccC---------CCCCceeEEEeCCCCCCceEEcCCC
Q 024436           98 ATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT---------SKAGTIEIVAQLPGFPDNIKRSPRG  166 (268)
Q Consensus        98 ~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~---------~~~g~~~~~~~l~g~Pdgia~d~dG  166 (268)
                      .+++...+..  .-...+.++|+| ++.|+ +.+..+.|..|++..         ...  ...+ ..++.+..+++++++
T Consensus        88 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           88 GSPSFQALTNNEANLGICRICKYG-DDKLI-AASWDGLIEVIDPRNYGDGVIAVKNLN--SNNT-KVKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEET-TTEEE-EEETTSEEEEECHHHHTTBCEEEEESC--SSSS-SSCCCEEEEEECSSE
T ss_pred             cCCceEeccccCCCCceEEEEeCC-CCEEE-EEcCCCeEEEEcccccccccccccCCe--eeEE-eeCCceEEEEecCCc
Confidence            8777766665  556678999999 77554 556778999999863         110  0001 123456778888877


Q ss_pred             CEEEEEecC
Q 024436          167 GFWVGIHSR  175 (268)
Q Consensus       167 ~l~va~~~~  175 (268)
                       ++++...+
T Consensus       163 -l~~~~~d~  170 (342)
T 1yfq_A          163 -LIVGMNNS  170 (342)
T ss_dssp             -EEEEESTT
T ss_pred             -EEEEeCCC
Confidence             66665544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.01  E-value=0.002  Score=55.18  Aligned_cols=150  Identities=12%  Similarity=0.075  Sum_probs=91.8

Q ss_pred             CEEEEecCCCCCcceEEECCC----CCEEEEEeCCCeEEEEeCC-CCeEEEEEEc--------------CCCCCe-eEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDAL----GEGPYTGVSDGRIIKWHQD-QRRWLHFART--------------SPNRNH-ISVI   83 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~d----G~~l~~~~~~g~I~~~~~~-g~~~~~~~~~--------------~~~~~~-~~~~   83 (268)
                      .++.+..+......+++++|+    ...+++...++.|..|+.. ++.+..+...              .++... ...+
T Consensus         9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A            9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            445666565567899999984    4456666667788888765 3322222211              011000 0112


Q ss_pred             eecCCcceEEEEeCCCCeEEE-eecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCC
Q 024436           84 LSGDKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPD  158 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pd  158 (268)
                      ..+..+|.|..+|..+++... +...-...+.++|+| +++.| ++-...+.|..|++..+.  ....+..   ..+...
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~  165 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL-LSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVL  165 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEE-EEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEE
T ss_pred             EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEE-EEEeCCCeEEEEEeecCe--EEEEecccccccCcee
Confidence            334567889999988776544 334555678999999 88755 555677899999987432  1222211   123567


Q ss_pred             ceEEcCCCCEEEEEecCC
Q 024436          159 NIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~  176 (268)
                      .++++++|+++++....+
T Consensus       166 ~~~~~~~~~~l~~~~~dg  183 (366)
T 3k26_A          166 SADYDLLGEKIMSCGMDH  183 (366)
T ss_dssp             EEEECTTSSEEEEEETTS
T ss_pred             EEEECCCCCEEEEecCCC
Confidence            899999998777665554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.00  E-value=0.00063  Score=65.49  Aligned_cols=162  Identities=13%  Similarity=0.105  Sum_probs=99.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+... -....+++++|+|+.++++..+|.|..|+.+ ++....+..         ..++++++.   ....+|.|.
T Consensus        47 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg~i~  122 (814)
T 3mkq_A           47 EVRSIQVT-ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL---SGSDDLTVK  122 (814)
T ss_dssp             EEEEEECC-SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE---EEETTSEEE
T ss_pred             eEEEEecC-CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEE---EEcCCCEEE
Confidence            44555533 3467899999999999999999999999864 443222221         123333332   234567777


Q ss_pred             EEeCCCC-eEE-EeecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcC--CCC
Q 024436           94 KYDPATK-QVT-VLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP--RGG  167 (268)
Q Consensus        94 ~~d~~~~-~~~-~~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~--dG~  167 (268)
                      .+|.+++ ... .+...-.....++|+| |++ ++++.+..+.|..|++..+..  ...+.. .......+++.+  +|+
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~  199 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKP  199 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCC
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCC
Confidence            7777654 333 3344445578999999 775 555666789999999875321  122222 223466788888  888


Q ss_pred             EEEEEecCCCcceeeeEeeC-ccceeeeecc
Q 024436          168 FWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  197 (268)
Q Consensus       168 l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~  197 (268)
                      ++++....+.     |..+. ..++.+..+.
T Consensus       200 ~l~~~~~dg~-----i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          200 YMITASDDLT-----IKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEEEECTTSE-----EEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCE-----EEEEECCCCcEEEEEc
Confidence            7776665542     33333 4455554443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.99  E-value=0.00074  Score=60.52  Aligned_cols=148  Identities=10%  Similarity=0.103  Sum_probs=91.4

Q ss_pred             EEEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCC-----------CeEEEEEEc---------CCCCCeeEEE
Q 024436           25 VVQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQ-----------RRWLHFART---------SPNRNHISVI   83 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g-----------~~~~~~~~~---------~~~~~~~~~~   83 (268)
                      ...+...+  .+..+++.|+ +++++++..+|.|..|+...           .....+...         .+....  .+
T Consensus       122 ~~~~~h~~--~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--~l  197 (430)
T 2xyi_A          122 EIKINHEG--EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG--YL  197 (430)
T ss_dssp             EEEEEESS--CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT--EE
T ss_pred             EEEEcCCC--cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC--eE
Confidence            33444443  7999999998 77888888899998887542           211222111         112221  12


Q ss_pred             eecCCcceEEEEeCCCCe--------EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC-CCceeEEEeCC
Q 024436           84 LSGDKTGRLMKYDPATKQ--------VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-AGTIEIVAQLP  154 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~--------~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~-~g~~~~~~~l~  154 (268)
                      +.+...|.|..++..++.        ...+.......+.++|+|++..++++....+.|..|++.... ......+..-.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            344567788888876521        122334445578999999655677888889999999997532 11122222223


Q ss_pred             CCCCceEEcCCCC-EEEEEecCC
Q 024436          155 GFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       155 g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      ..+..+++.++|. ++++....+
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCC
Confidence            4578899999986 666655544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.99  E-value=0.0012  Score=57.53  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=86.2

Q ss_pred             CCcceEEEC----CCCCE-EEEEeCCCeEEEEeCCC-------CeEE-----EEEE----------------cCCCCCee
Q 024436           34 IGPESLAFD----ALGEG-PYTGVSDGRIIKWHQDQ-------RRWL-----HFAR----------------TSPNRNHI   80 (268)
Q Consensus        34 ~~P~gia~~----~dG~~-l~~~~~~g~I~~~~~~g-------~~~~-----~~~~----------------~~~~~~~~   80 (268)
                      ....++++.    |+++. ++++..++.|..|+...       +...     .+..                ..++.   
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  198 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---  198 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---
T ss_pred             CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---
Confidence            467899999    99999 89998999998887543       2111     2211                01222   


Q ss_pred             EEEeecCCcceEEEEeCCCCeEEEeecC-------CCCcceEEEccCCCEEEEEecCC---cEEEEEEccCCCCCceeEE
Q 024436           81 SVILSGDKTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTS---CRILRYWLKTSKAGTIEIV  150 (268)
Q Consensus        81 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGia~spdg~~lyva~~~~---~~I~~~~~~~~~~g~~~~~  150 (268)
                       .+......+.|..+|..+++.......       ....+.++|+|++++|+++ ...   +.|..|++....  ....+
T Consensus       199 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g~i~i~d~~~~~--~~~~~  274 (397)
T 1sq9_A          199 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGE--RIGSL  274 (397)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEEEEEEEETTTCC--EEEEE
T ss_pred             -eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCceEEEEECCCCc--cccee
Confidence             233445678899999887766544443       5567899999999866655 455   799999987432  12222


Q ss_pred             Ee-------------CCCCCCceEEcCCCCEEEEEecCC
Q 024436          151 AQ-------------LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       151 ~~-------------l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..             ..+....++++++|+++++....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            21             123356789999998766665544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.98  E-value=0.0055  Score=51.94  Aligned_cols=138  Identities=13%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....+++++|+|++++++..|+.|..++............          .+..+++   .....++.+..+|.......
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI---VSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE---EEEETTSCEEEECTTSCEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccc---eeecCCCeEEEEEeCCCceE
Confidence            4578899999999999999999999888765432221111          1111222   12334567777877643332


Q ss_pred             Eee--cCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          104 VLL--GNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       104 ~~~--~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ...  ......+.+++++++. .++++....+.|..|++.....  ...+..-.+....++++++|+++++....+
T Consensus       164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            222  2234456788988764 3556777778999999874321  111211123456789999999777665544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.00088  Score=64.85  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=78.7

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCC--CCeeEEEeecCCcceEEEEe
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPN--RNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~--~~~~~~~~~~~~~g~v~~~d   96 (268)
                      +.-....+++++|+|++++++..+|.|..|+..+.........            .++  +.++   ..+..+|.|..+|
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l---~s~s~Dg~I~vwd   83 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL---ASCSYDGKVLIWK   83 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEE---EEEETTSCEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEE---EEEeCCCeEEEEE
Confidence            3344678899999999999999999999887653221111111            111  2222   2334567777777


Q ss_pred             CCCCeE---EEeecCCCCcceEEEccC--CCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           97 PATKQV---TVLLGNLSFPNGVALSED--GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        97 ~~~~~~---~~~~~~~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ..+++.   ..........+.++|+|+  ++.+ ++-+..+.|..|++..........+...++....+++++
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p  155 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEE-EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence            766653   233344456689999999  8755 455678999999997542211222222223455677777

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.98  E-value=0.0021  Score=57.51  Aligned_cols=148  Identities=12%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCC----eE----EEEE---------EcCC-CCCeeEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQR----RW----LHFA---------RTSP-NRNHISVIL   84 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~----~~----~~~~---------~~~~-~~~~~~~~~   84 (268)
                      .+..+.-. .....+++++|++. +++++..+|.|..|+....    ..    ..+.         ...+ +..++   .
T Consensus       173 ~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l---~  248 (430)
T 2xyi_A          173 PDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G  248 (430)
T ss_dssp             CSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE---E
T ss_pred             CcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE---E
Confidence            34444433 23578999999998 8999999999999987541    10    1110         0112 11211   2


Q ss_pred             ecCCcceEEEEeCCCC----eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCce
Q 024436           85 SGDKTGRLMKYDPATK----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI  160 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~----~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgi  160 (268)
                      .....+.|..+|..++    .+..+...-..++.|+|+|+++.++++....+.|..|++.... .....+....+....+
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQV  327 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEE
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEE
Confidence            3345688888888755    2333444456689999999998788888888999999997421 1122332223456789


Q ss_pred             EEcCCCC-EEEEEecCC
Q 024436          161 KRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       161 a~d~dG~-l~va~~~~~  176 (268)
                      ++.++|. ++++....+
T Consensus       328 ~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          328 QWSPHNETILASSGTDR  344 (430)
T ss_dssp             EECSSCTTEEEEEETTS
T ss_pred             EECCCCCCEEEEEeCCC
Confidence            9999984 666665544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.97  E-value=0.00029  Score=61.55  Aligned_cols=135  Identities=13%  Similarity=0.020  Sum_probs=80.2

Q ss_pred             CcceEEECC-CCCEEEEEeC------CCeEEEEeCCCCeEEE-----------EEEcCCCCCeeE-EEeec-CCcceEEE
Q 024436           35 GPESLAFDA-LGEGPYTGVS------DGRIIKWHQDQRRWLH-----------FARTSPNRNHIS-VILSG-DKTGRLMK   94 (268)
Q Consensus        35 ~P~gia~~~-dG~~l~~~~~------~g~I~~~~~~g~~~~~-----------~~~~~~~~~~~~-~~~~~-~~~g~v~~   94 (268)
                      ....++++| ||+.++....      ..+|+.++.++.....           ....+|++.++. ..... .....|+.
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence            356889999 9987654433      3489888876542111           112345554332 21121 12235999


Q ss_pred             EeCCCCeEEEeecCC------CCcceEEEccCCCEEEEEe--------cCCcEEEEEEccCCCCCceeEEEeCCC-----
Q 024436           95 YDPATKQVTVLLGNL------SFPNGVALSEDGNYILLAE--------TTSCRILRYWLKTSKAGTIEIVAQLPG-----  155 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~------~~pnGia~spdg~~lyva~--------~~~~~I~~~~~~~~~~g~~~~~~~l~g-----  155 (268)
                      +|.++++.+.+...-      ..+.+++|+|||+.|+++.        .....|++++++++.   ...+...++     
T Consensus       269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~  345 (388)
T 3pe7_A          269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---QHRVARHDTSWKVF  345 (388)
T ss_dssp             ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE---EEEEEECCCCCCCB
T ss_pred             EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---eEEeccccCccccc
Confidence            999988876654321      1267789999999888753        456689999998632   333333222     


Q ss_pred             ------CCCceEEcCCCC-EEEEE
Q 024436          156 ------FPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus       156 ------~Pdgia~d~dG~-l~va~  172 (268)
                            ....+++++||+ |+.+.
T Consensus       346 ~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          346 EGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ccccccCCCCccCCCCCCEEEEEe
Confidence                  356789999997 44443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.96  E-value=0.0011  Score=56.52  Aligned_cols=113  Identities=16%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+.... ..-..+++.|++++++++..|+.|..|+.. ++....+..         ..++++++.   .+..++.|.
T Consensus        47 ~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---sgs~D~~v~  122 (304)
T 2ynn_A           47 EVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL---SGSDDLTVK  122 (304)
T ss_dssp             EEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE---EEETTSCEE
T ss_pred             eeEEeeccC-CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEE---EECCCCeEE
Confidence            445554442 345788999999999999999999999875 443333321         123333332   334567777


Q ss_pred             EEeCCCC-eEEE-eecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccC
Q 024436           94 KYDPATK-QVTV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        94 ~~d~~~~-~~~~-~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+|.+++ .... +...-...+.++|+| |++ ++++.+..+.|..|++..
T Consensus       123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEEEEETTSEEEEEETTC
T ss_pred             EEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCC
Confidence            7776644 3333 334445568999999 555 556777889999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.96  E-value=0.00043  Score=60.25  Aligned_cols=139  Identities=12%  Similarity=0.028  Sum_probs=80.0

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe----EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR----WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~----~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ....+++++|+|++++++..|+.|..|+.....    ...+.         ...++..++.   .....+.|..+|.+++
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFA---VGSGARVISVCYFEQE  132 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCE---EEESSSCEEECCC---
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEE---EEecCCeEEEEEECCc
Confidence            356889999999999999999999888765421    11110         1122222222   2234567777777755


Q ss_pred             e----EEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-------------ceeEEEeC--CCCCCce
Q 024436          101 Q----VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-------------TIEIVAQL--PGFPDNI  160 (268)
Q Consensus       101 ~----~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-------------~~~~~~~l--~g~Pdgi  160 (268)
                      +    ...+.. .-...+.++|+||+++|+ +.+..+.|..|++......             .......+  .+....+
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  211 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLA-AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAV  211 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSSEEE-EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEE
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCCEEE-EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEE
Confidence            4    344444 455678999999998665 5556788999998521100             01122222  2235678


Q ss_pred             EEcCCCCEEEEEecCC
Q 024436          161 KRSPRGGFWVGIHSRR  176 (268)
Q Consensus       161 a~d~dG~l~va~~~~~  176 (268)
                      +++++|+++++....+
T Consensus       212 ~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          212 GFSPSGNALAYAGHDS  227 (377)
T ss_dssp             EECTTSSCEEEEETTT
T ss_pred             EECCCCCEEEEEeCCC
Confidence            9999998666554443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.96  E-value=0.0077  Score=52.41  Aligned_cols=138  Identities=9%  Similarity=0.102  Sum_probs=80.3

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCC--
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATK--  100 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~--  100 (268)
                      ...-.+++++|||++++++..|+.|..|+... +....+..         .+|++.++.   .+..++.+..++....  
T Consensus        64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~la---sg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA---CGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEE---EESTTSEEEEEECCCCTT
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEE---EeeCCCCEEEEEEecccc
Confidence            44678999999999999999999999998643 32222211         123333222   2334455555544311  


Q ss_pred             -----eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC--CCCEEEEEe
Q 024436          101 -----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP--RGGFWVGIH  173 (268)
Q Consensus       101 -----~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~--dG~l~va~~  173 (268)
                           ....+.......+.++|+|+++.|+ +.+..+.|..|++..+..  ...+..-......+++.+  +|+++++..
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             ccccccceeeeccCCcEEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence                 1223333445567899999998665 666789999999875321  222221112233455654  567666555


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ..+
T Consensus       218 ~Dg  220 (354)
T 2pbi_B          218 CDK  220 (354)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.96  E-value=0.00067  Score=58.92  Aligned_cols=137  Identities=12%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ...-.+++++|+|++++++..|+.|..|+.+.........            ..+++.++.   ....++.|..+|.+++
T Consensus        61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~---s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA---TCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEEECTT
T ss_pred             CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEE---EEECCCeEEEEECCCC
Confidence            3457889999999999999999999888754332111111            123333332   2234455666655433


Q ss_pred             e----EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEe
Q 024436          101 Q----VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus       101 ~----~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~  173 (268)
                      +    +..+.......+.++|+|+++.| ++.+..+.|..|+...+.   ......+.   +....++++++|+++++..
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~i~~w~~~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELL-ASASYDDTVKLYREEEDD---WVCCATLEGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCE-EEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEE-EEEeCCCcEEEEEecCCC---EEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence            2    22233344456789999999855 555677889999876421   12122222   3456799999998777665


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ..+
T Consensus       214 ~D~  216 (345)
T 3fm0_A          214 DDR  216 (345)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.94  E-value=0.0045  Score=53.85  Aligned_cols=160  Identities=11%  Similarity=-0.032  Sum_probs=88.9

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-------EEEEEEc---------CCC----CCeeEEEeecCCcc
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-------WLHFART---------SPN----RNHISVILSGDKTG   90 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-------~~~~~~~---------~~~----~~~~~~~~~~~~~g   90 (268)
                      +.-....+++++|  ++++++..+|.|..|+.+...       ...+...         .++    +.-...+......+
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg   91 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   91 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence            3345678999998  778999999999999875432       2322211         111    10001122333456


Q ss_pred             eEEEEeCCCCe------EEEeecC-----CCCcceEEEc----cCCCEEEEEecCCcEEEEEEccC------CCCCc---
Q 024436           91 RLMKYDPATKQ------VTVLLGN-----LSFPNGVALS----EDGNYILLAETTSCRILRYWLKT------SKAGT---  146 (268)
Q Consensus        91 ~v~~~d~~~~~------~~~~~~~-----~~~pnGia~s----pdg~~lyva~~~~~~I~~~~~~~------~~~g~---  146 (268)
                      .|..+|..+++      ...+...     -...+.++|+    |+++.++++-+..+.|..|++..      ...-.   
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence            66666665554      4444333     2567899999    99987244555678899999875      32111   


Q ss_pred             eeEEE------e-CCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeeccc
Q 024436          147 IEIVA------Q-LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI  198 (268)
Q Consensus       147 ~~~~~------~-l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~  198 (268)
                      ...+.      . -......+++.++| ++++....+.     |..+. ..++.+..+..
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-----i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-----VQISELSTLRPLYNFES  225 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-----EEEEETTTTEEEEEEEC
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc-----EEEEECCCCceeEEEec
Confidence            01232      1 13457889999999 6665555442     33333 34555555443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.94  E-value=0.0068  Score=51.22  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEEc---------CCC--CCeeEEEeecCCcceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFART---------SPN--RNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~~~~~~~~---------~~~--~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      -..-..++++|+|++++++..|+.|..|+.++.   ....+...         .+.  +.+   +.+...++.|..+|..
T Consensus         9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~---l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI---LASCSYDGKVMIWKEE   85 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE---EEEEETTTEEEEEEBS
T ss_pred             cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE---EEEEcCCCEEEEEEcC
Confidence            345678999999999999999999998886532   11222110         111  122   2233456777777776


Q ss_pred             CCeE---EEeecCCCCcceEEEccC--CCEEEEEecCCcEEEEEEccC
Q 024436           99 TKQV---TVLLGNLSFPNGVALSED--GNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        99 ~~~~---~~~~~~~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~  141 (268)
                      +++.   ..+...-...+.++|+|+  |+.| ++-+..+.|..|++..
T Consensus        86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l-~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPML-LVASSDGKVSVVEFKE  132 (297)
T ss_dssp             SSCBCCCEEECCCSSCEEEEEECCGGGCSEE-EEEETTSEEEEEEBCS
T ss_pred             CCceEEEEEeecCCCceeEEEeCcCCCCcEE-EEEECCCcEEEEEecC
Confidence            5532   223333445689999998  7655 5566789999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.0077  Score=51.76  Aligned_cols=135  Identities=10%  Similarity=0.009  Sum_probs=80.1

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCC--------eEEEEE---------EcCCCCCeeEEEeecCCcceEEEEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--------RWLHFA---------RTSPNRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~--------~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      ..-.+++++|+|++++++..|+.|..|+....        ....+.         ..++++.++.   ....++.|..+|
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~la---s~s~D~~v~iwd  135 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA---TCSRDKSVWIWE  135 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEE---EEETTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEE---EEeCCCEEEEEe
Confidence            45788999999999999999999998876321        111110         1123333332   333456777777


Q ss_pred             CCC-C---e-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCC--C
Q 024436           97 PAT-K---Q-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPR--G  166 (268)
Q Consensus        97 ~~~-~---~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~d--G  166 (268)
                      ... +   + +..+...-...+.++|+|+++.| ++-+..+.|..|+...+   ..+.+..+.   +....++++++  +
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~iW~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALL-ASSSYDDTVRIWKDYDD---DWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE-EEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEE-EEEcCCCeEEEEECCCC---CeeEEEEccCCCCcEEEEEecCCCCe
Confidence            631 2   2 23334444557899999999854 56677889999987532   112222222   23456788887  5


Q ss_pred             CEEEEEecC
Q 024436          167 GFWVGIHSR  175 (268)
Q Consensus       167 ~l~va~~~~  175 (268)
                      .++++....
T Consensus       212 ~~l~s~s~D  220 (330)
T 2hes_X          212 FRLCSGSDD  220 (330)
T ss_dssp             CEEEEEETT
T ss_pred             eEEEEEeCC
Confidence            554444433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.93  E-value=0.0056  Score=61.98  Aligned_cols=147  Identities=12%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFART---------SPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~   93 (268)
                      .+..+.- .-....+++++|+|++++++..++.|..|+... +....+...         .+..+.. .+..+..++.|.
T Consensus       649 ~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~  726 (1249)
T 3sfz_A          649 KLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL-LLATGSNDFFLK  726 (1249)
T ss_dssp             EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC-EEEEEETTSCEE
T ss_pred             EEEEecc-CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce-EEEEEeCCCeEE
Confidence            3444442 234678999999999999999999999998753 332222211         1111111 112334567888


Q ss_pred             EEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-------------CCCCCCc
Q 024436           94 KYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-------------LPGFPDN  159 (268)
Q Consensus        94 ~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-------------l~g~Pdg  159 (268)
                      .+|..+++... +.......+.++|+||++.| ++.+..+.|..|++..+..  ...+..             .......
T Consensus       727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELL-ASCSADGTLRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             EEETTSSSEEEEECCCSSCEEEEEECSSTTEE-EEEESSSEEEEEEGGGTEE--EEEEECCCCC--------CCCCCBCC
T ss_pred             EEECCCcchhheecCCCCCEEEEEEecCCCEE-EEEECCCeEEEEeCCCCcc--cceecccccccccCCccccccceEEE
Confidence            88888776543 34444567899999999855 5556778999999874321  111110             1124567


Q ss_pred             eEEcCCCCEEEEEecC
Q 024436          160 IKRSPRGGFWVGIHSR  175 (268)
Q Consensus       160 ia~d~dG~l~va~~~~  175 (268)
                      +++.++|+.+++...+
T Consensus       804 ~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             CCBCTTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEcCC
Confidence            8999999877766544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.93  E-value=0.0084  Score=51.99  Aligned_cols=147  Identities=15%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             cCCCEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCe----EEE--EE-----------------EcCC-
Q 024436           21 STQGVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRR----WLH--FA-----------------RTSP-   75 (268)
Q Consensus        21 ~~~~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~----~~~--~~-----------------~~~~-   75 (268)
                      ..+..+.+. +.-....+++++| +|++++++..+|.|..|+.+...    ...  ..                 ...+ 
T Consensus        32 ~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           32 LNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             ECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             cCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            333444443 3345789999999 99999999999999999875421    110  00                 0011 


Q ss_pred             CCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccC---CCEEEEEecCCcEEEEEEccCCCCCceeEEEe
Q 024436           76 NRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  152 (268)
Q Consensus        76 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spd---g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~  152 (268)
                      +..++   ......+.|..+|..+++.............++++|.   ++.+ ++....+.|..|++..+..  ...+..
T Consensus       111 ~~~~l---~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~d~~~~~~--~~~~~~  184 (408)
T 4a11_B          111 DTGMF---TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLV-AVGTRGPKVQLCDLKSGSC--SHILQG  184 (408)
T ss_dssp             CTTCE---EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEE-EEEESSSSEEEEESSSSCC--CEEECC
T ss_pred             CCcEE---EEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEE-EEEcCCCeEEEEeCCCcce--eeeecC
Confidence            11122   2334567889999887777666555556678999885   4345 4556778999999875321  222221


Q ss_pred             CCCCCCceEEcCCCC-EEEEEec
Q 024436          153 LPGFPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       153 l~g~Pdgia~d~dG~-l~va~~~  174 (268)
                      ..+....+++.++|. ++++...
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCcEEEEEECCCCCcEEEEEcC
Confidence            223355677777775 4444433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.92  E-value=0.0033  Score=52.92  Aligned_cols=113  Identities=12%  Similarity=0.031  Sum_probs=71.4

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-----eEEEEEE---------cCC--CCCeeEEEeecCC
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-----RWLHFAR---------TSP--NRNHISVILSGDK   88 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-----~~~~~~~---------~~~--~~~~~~~~~~~~~   88 (268)
                      ++.+..+.-....+++++|+|++++++..+|.|..|+.+..     ....+..         ..+  ++.++   .....
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l---~s~~~   79 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII---ASASY   79 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE---EEEET
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE---EEEcC
Confidence            34455555557899999999999999999999999876532     1111111         112  12222   22334


Q ss_pred             cceEEEEeCCCCe----------EEEeecCCCCcceEEEccC--CCEEEEEecCCcEEEEEEccC
Q 024436           89 TGRLMKYDPATKQ----------VTVLLGNLSFPNGVALSED--GNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        89 ~g~v~~~d~~~~~----------~~~~~~~~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~  141 (268)
                      ++.|..+|..+++          ...+...-.....++|+|+  ++.|+ +-+..+.|..|++..
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA-CLGNDGILRLYDALE  143 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTCEEEEEECSS
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE-EecCCCcEEEecCCC
Confidence            5666666665442          3333344455689999999  87555 555778999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.92  E-value=0.0028  Score=58.48  Aligned_cols=151  Identities=9%  Similarity=0.019  Sum_probs=85.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-C----CeEEEEE----------EcCC--CCCeeEEEeecCCcceEEEEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-Q----RRWLHFA----------RTSP--NRNHISVILSGDKTGRLMKYD   96 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g----~~~~~~~----------~~~~--~~~~~~~~~~~~~~g~v~~~d   96 (268)
                      ..+..++++|||++++++. ++.|..++.+ +    +....+.          ..++  ++.++.   ....+|.|..+|
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~---s~~~dg~v~vw~   94 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC---SGDESGKVIVWG   94 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEE---EEETTSEEEEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEE---EecCCCEEEEEe
Confidence            5688999999999888776 7788888764 3    2222221          1234  444332   223456676666


Q ss_pred             CCCC--------eEE-EeecCCCCcceEEEccCCCEEEEEecCC---cEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           97 PATK--------QVT-VLLGNLSFPNGVALSEDGNYILLAETTS---CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        97 ~~~~--------~~~-~~~~~~~~pnGia~spdg~~lyva~~~~---~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      ..++        +.. .+.......+.++|+|||++|+++....   +.|+.|+..  .  ....+..-.+....+++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~--~~~~~~~~~~~v~~~~~~~  170 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N--SLGEVSGHSQRINACHLKQ  170 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C--EEEECCSCSSCEEEEEECS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C--cceeeecCCccEEEEEECC
Confidence            6433        222 2333444568999999999887776443   577777621  1  1111111123456789999


Q ss_pred             CCC-EEEEEecCCCcceeeeEee-Cccceeeeecc
Q 024436          165 RGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIKLP  197 (268)
Q Consensus       165 dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~  197 (268)
                      +|. ++++....+.     +..+ ...++.+..+.
T Consensus       171 ~~~~~l~~~~~d~~-----v~vwd~~~~~~~~~~~  200 (615)
T 1pgu_A          171 SRPMRSMTVGDDGS-----VVFYQGPPFKFSASDR  200 (615)
T ss_dssp             SSSCEEEEEETTTE-----EEEEETTTBEEEEEEC
T ss_pred             CCCcEEEEEeCCCc-----EEEEeCCCcceeeeec
Confidence            996 5555544432     3333 24455555544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.92  E-value=0.00055  Score=65.12  Aligned_cols=133  Identities=13%  Similarity=0.094  Sum_probs=82.2

Q ss_pred             CcceEEECCCCCEEEEEeCC-----CeEEEEeCCCC-eEEEEE--------------EcCC--CCCeeEEEeecCCcceE
Q 024436           35 GPESLAFDALGEGPYTGVSD-----GRIIKWHQDQR-RWLHFA--------------RTSP--NRNHISVILSGDKTGRL   92 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~-----g~I~~~~~~g~-~~~~~~--------------~~~~--~~~~~~~~~~~~~~g~v   92 (268)
                      .+..++++|||+.+++...+     ..|..++.++. ......              ..++  ++.++. ........+|
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~-~~~~~g~~~l  337 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW-QSRRDGWNHL  337 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE-EECTTSSCEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE-EEccCCccEE
Confidence            35689999999977765443     38888887654 332221              1123  333332 1122345689


Q ss_pred             EEEeCCCCeEEEeecCCCCcce-EEEccCCCEEEEEecCCc----EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436           93 MKYDPATKQVTVLLGNLSFPNG-VALSEDGNYILLAETTSC----RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~~~~pnG-ia~spdg~~lyva~~~~~----~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      |.++.+++.++.+..+...... ++|+|||+.||++....+    +|++++.+++.   ...+.. ......+++++||+
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~-~~~~~~~~~spdg~  413 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLTP-ESGMHRTQLSPDGS  413 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESCC-SSSEEEEEECTTSS
T ss_pred             EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceeccC-CCceEEEEECCCCC
Confidence            9999765666666544322334 799999999999877654    88888887532   222221 12356789999998


Q ss_pred             EEEEE
Q 024436          168 FWVGI  172 (268)
Q Consensus       168 l~va~  172 (268)
                      .++..
T Consensus       414 ~l~~~  418 (706)
T 2z3z_A          414 AIIDI  418 (706)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.89  E-value=0.0076  Score=51.01  Aligned_cols=138  Identities=16%  Similarity=0.129  Sum_probs=85.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      ........+.++++.++++..++.+..++..+........           ..+..... .+......+.|..+|..+++
T Consensus       128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~s~~~d~~i~i~d~~~~~  206 (340)
T 4aow_A          128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP-IIVSCGWDKLVKVWNLANCK  206 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC-EEEEEETTSCEEEEETTTTE
T ss_pred             CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc-EEEEEcCCCEEEEEECCCCc
Confidence            3467778889999999999999999888876542111110           01111111 11223345678888888776


Q ss_pred             EEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          102 VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       102 ~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ...... .-...+.++|+|||++| ++.+..+.|..|++....  ....+ ........+++.+++.++.+...+
T Consensus       207 ~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          207 LKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEE-EEEETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeeEecCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEeccCc--eeeee-cCCceEEeeecCCCCceeeccCCC
Confidence            654443 33445789999999855 455677899999987421  11111 122345677888888877766554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.005  Score=51.42  Aligned_cols=213  Identities=12%  Similarity=0.028  Sum_probs=117.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEEcC-------CCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ----RRWLHFARTS-------PNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g----~~~~~~~~~~-------~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .....++++|+++.++++..++.|..++...    +....+....       .+..+   ++....++.|..+|.. ...
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~~~d~~i~~~d~~-~~~  135 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGV---VISGSWDKTAKVWKEG-SLV  135 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTE---EEEEETTSEEEEEETT-EEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCE---EEEEeCCCCEEEEcCC-cEE
Confidence            4688999999999999999999998776432    1111110000       01111   2233456788888843 334


Q ss_pred             EEeecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEEEecCCCcce
Q 024436          103 TVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGIS  180 (268)
Q Consensus       103 ~~~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~~~~~  180 (268)
                      ..+.........+++.| +++.++ +.+..+.|..|+...    ....+.. .......+++.++|.++++...+.    
T Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~----  206 (313)
T 3odt_A          136 YNLQAHNASVWDAKVVSFSENKFL-TASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL----  206 (313)
T ss_dssp             EEEECCSSCEEEEEEEETTTTEEE-EEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSE----
T ss_pred             EecccCCCceeEEEEccCCCCEEE-EEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCe----
Confidence            44445555667899988 887655 555678999998431    1222222 234567788988888555544432    


Q ss_pred             eeeEeeC-ccceeeeeccccceeeeeec-c------ccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEE-eCCE
Q 024436          181 KLVLSFP-WIGNVLIKLPIDIVKIHSSL-V------KLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEE-KDGN  250 (268)
Q Consensus       181 ~~v~~~~-~~g~~l~~i~~~~~~~~~~~-~------~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~-~~g~  250 (268)
                        |..+. ..++.+..+......++++. .      ..... +.+...+. +++.+..+..+.+    .++.+.. .+++
T Consensus       207 --i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~  279 (313)
T 3odt_A          207 --IKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED-RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGD  279 (313)
T ss_dssp             --EEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT-SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSC
T ss_pred             --EEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC-CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCC
Confidence              33332 34555554432222222211 0      01111 34555554 4666666665432    2444444 4566


Q ss_pred             EEEeeCCCCeEEEEeCC
Q 024436          251 LWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       251 Lyv~s~~~~~v~~~~~~  267 (268)
                      ++ +...+..|.+.+++
T Consensus       280 ~~-~~~~dg~i~iw~~~  295 (313)
T 3odt_A          280 II-VGSSDNLVRIFSQE  295 (313)
T ss_dssp             EE-EEETTSCEEEEESC
T ss_pred             EE-EEeCCCcEEEEeCC
Confidence            54 45567788887765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.87  E-value=0.0017  Score=57.21  Aligned_cols=139  Identities=10%  Similarity=0.027  Sum_probs=87.4

Q ss_pred             CCcceEEECCCC-CEEEEEeCCCeEEEEeCCCCeE-EEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           34 IGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRW-LHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~g~~~-~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ....+++++|+| ++++++..++.|..|+...... ..+.           ...+++.++.   ....++.|..+|..++
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC---TSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE---EEETTSEEEEEETTTT
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE---EEecCCcEEEEeCCCC
Confidence            467889999998 6888999999999998754422 2220           0112222222   3345688999999877


Q ss_pred             eEEEee-cCCC--CcceEEEccCCCEEEEEe--cCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEE-EEe
Q 024436          101 QVTVLL-GNLS--FPNGVALSEDGNYILLAE--TTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV-GIH  173 (268)
Q Consensus       101 ~~~~~~-~~~~--~pnGia~spdg~~lyva~--~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~v-a~~  173 (268)
                      +..... ....  .+..++|+||++.|+++.  +..+.|..|++...... ..... ........++++++|++++ +..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g~  287 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVYLCGK  287 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence            665443 2222  368999999997554432  57789999999753211 11111 1223467889999998654 443


Q ss_pred             cCC
Q 024436          174 SRR  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ..+
T Consensus       288 ~dg  290 (402)
T 2aq5_A          288 GDS  290 (402)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            333

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.86  E-value=0.0021  Score=54.95  Aligned_cols=136  Identities=14%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             CCcceEEECCC---CCEEEEEeCCCeEEEEeCCCC--eEEEEEE---------------cCCCCCeeEEEeecCCcceEE
Q 024436           34 IGPESLAFDAL---GEGPYTGVSDGRIIKWHQDQR--RWLHFAR---------------TSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        34 ~~P~gia~~~d---G~~l~~~~~~g~I~~~~~~g~--~~~~~~~---------------~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      ....++++.|+   |++++++..++.|..|+....  ....+..               .+++.+++   ......+.|.
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l---~~~~~d~~i~  142 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI---VTGSRDGTVK  142 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE---EEEETTSCEE
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE---EEEeCCCeEE
Confidence            46789999999   698999999999999986532  1122110               01222222   2334567888


Q ss_pred             EEeCCCCe--EEEeecCC----CCcceEE----EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436           94 KYDPATKQ--VTVLLGNL----SFPNGVA----LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  163 (268)
Q Consensus        94 ~~d~~~~~--~~~~~~~~----~~pnGia----~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d  163 (268)
                      .+|..+++  +..+....    ...+.++    ++|+++.|+ +....+.|..|++....   .............++++
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC-AGYDNGDIKLFDLRNMA---LRWETNIKNGVCSLEFD  218 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEE-EEETTSEEEEEETTTTE---EEEEEECSSCEEEEEES
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEE-EEccCCeEEEEECccCc---eeeecCCCCceEEEEcC
Confidence            88887654  33332111    1334556    789998665 44567899999997532   22222234457789999


Q ss_pred             C---CCCEEEEEecCC
Q 024436          164 P---RGGFWVGIHSRR  176 (268)
Q Consensus       164 ~---dG~l~va~~~~~  176 (268)
                      +   +|+++++....+
T Consensus       219 ~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          219 RKDISMNKLVATSLEG  234 (357)
T ss_dssp             CSSSSCCEEEEEESTT
T ss_pred             CCCCCCCEEEEECCCC
Confidence            8   888666555444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.86  E-value=0.0028  Score=55.04  Aligned_cols=142  Identities=12%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             CCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        34 ~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ....++++.| ++++++++..++.|..|+.+..........         .+..+....+......+.|..+|..+++..
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            4678899999 788888888999999999765432221111         111110001223345678888888766543


Q ss_pred             E-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE---------------eCCCCCCceEEcCCCC
Q 024436          104 V-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA---------------QLPGFPDNIKRSPRGG  167 (268)
Q Consensus       104 ~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~---------------~l~g~Pdgia~d~dG~  167 (268)
                      . +.......+.++|+|++++++++....+.|..|++..... ....+.               ...+....++++++|+
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence            3 3334455689999999987777777889999999864220 011110               0112356789999998


Q ss_pred             EEEEEecCC
Q 024436          168 FWVGIHSRR  176 (268)
Q Consensus       168 l~va~~~~~  176 (268)
                      ++++....+
T Consensus       259 ~l~~~~~dg  267 (408)
T 4a11_B          259 HLLTVGTDN  267 (408)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEecCCC
Confidence            766665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.86  E-value=0.0022  Score=61.84  Aligned_cols=103  Identities=17%  Similarity=0.046  Sum_probs=68.7

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------------EcCCCCCeeEEEeec------CCcceEEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------------RTSPNRNHISVILSG------DKTGRLMK   94 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~------~~~g~v~~   94 (268)
                      -.++++.|||++++++  ++.|..++.++.....+.               ..+|++.++.-....      ...+.++.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            4578999999977775  899999987543222221               114555443221111      12377899


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      +|.++++.+.+......-...+|||||+.|.++.  .+.|+.++.+++
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~  142 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCC
Confidence            9999888776655444567899999999776663  478999988753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.85  E-value=0.0013  Score=62.63  Aligned_cols=89  Identities=9%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             cceEEECCCCCEEEEEeC---------CCeEEEEeCCCCeE---EEE------EEcCCCCCeeEEEeecCCcceEEEEeC
Q 024436           36 PESLAFDALGEGPYTGVS---------DGRIIKWHQDQRRW---LHF------ARTSPNRNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~---------~g~I~~~~~~g~~~---~~~------~~~~~~~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      ...++++|||+.+++...         ++.|+.++.++...   ..+      ...+|++.++.-.    ..+.|+.++.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~----~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV----YQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE----ETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE----ECCeEEEEeC
Confidence            678999999998876654         58899998766533   111      1234555544322    2468999998


Q ss_pred             CCCeEEEeecCC-------------------CCcceEEEccCCCEEEEEe
Q 024436           98 ATKQVTVLLGNL-------------------SFPNGVALSEDGNYILLAE  128 (268)
Q Consensus        98 ~~~~~~~~~~~~-------------------~~pnGia~spdg~~lyva~  128 (268)
                      ++++...+....                   ....+++|||||++|+++.
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            877766553211                   1225899999999888764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.85  E-value=0.0023  Score=60.96  Aligned_cols=136  Identities=16%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE-------------cCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR-------------TSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ....+++++|+|+.++++..|+.|..|+..+........             ..++... ..+.....++.|..+|..++
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-PTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-CEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-ceEEEEeCCCeEEEEECCCC
Confidence            467899999999999999999999999876543222111             0111100 01223345677888888766


Q ss_pred             eEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +.... ..+-...+.++|+|||++ +++.+..+.|..|++..+     +.+..+  ......+++++++.++++.....
T Consensus       552 ~~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          552 KLRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAEG-----KKLYSLEANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTTT-----EEEECCBCSSCEEEEEECSSSSEEEEEETTE
T ss_pred             cEEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCC-----ceEEEecCCCcEEEEEEcCCCcEEEEEcCCC
Confidence            65443 344455689999999985 456677899999998742     122222  23466789999998777766543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.82  E-value=0.0019  Score=55.22  Aligned_cols=104  Identities=14%  Similarity=0.047  Sum_probs=71.6

Q ss_pred             CCcceEEECCC----CCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCC-CCCeeEEEeecCCcceEEEEeCC
Q 024436           34 IGPESLAFDAL----GEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSP-NRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        34 ~~P~gia~~~d----G~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~-~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ....++++.|+    |++++++..+|.|..|+.. ++....+..         ..+ ++.++   .....++.|..+|..
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l---~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL---LSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEE---EEEETTSCEEEEETT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEE---EEEeCCCeEEEEEee
Confidence            35788999999    6789999999999999865 333222221         122 22322   233456788889988


Q ss_pred             CCeEEEee----cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           99 TKQVTVLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        99 ~~~~~~~~----~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +++.....    ........++|+|+++.|+. ....+.|..|++..
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~  192 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMS-CGMDHSLKLWRINS  192 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEE-EETTSCEEEEESCS
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEE-ecCCCCEEEEECCC
Confidence            77665544    34456789999999986654 45678999999874

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.82  E-value=4.5e-05  Score=71.21  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=55.6

Q ss_pred             CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecC--C
Q 024436           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--L  109 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~  109 (268)
                      .+..|.+|+|+++|.++++....-.     .++.                  ++...+..+|++++++|+++.+...  .
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~-----~~g~------------------~~~~gnn~v~~~dp~tGel~~fl~~P~~  530 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSS-----NAGD------------------FAGMGNNQMLCADPATGEIRRFMVGPIG  530 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCC-----CSGG------------------GTTCCSCEEEEECTTTCCEEEEEECCTT
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcC-----cccc------------------ccccCCceEEEEeCCCCeEEEEEeCCCC
Confidence            3688999999999997774321110     0111                  1223456899999988999888754  4


Q ss_pred             CCcceEEEccCCCEEEEEecCCc
Q 024436          110 SFPNGVALSEDGNYILLAETTSC  132 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~  132 (268)
                      ..|||++|+||+++|||+-..-+
T Consensus       531 aEpnGiafSPD~ktLfV~vQHPG  553 (592)
T 4a9v_A          531 CEVTGISFSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             CEEEEEEECTTSSEEEEEEESTT
T ss_pred             ccccCCEECCCCCEEEEEEeCCC
Confidence            67999999999999999865433

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.81  E-value=0.0002  Score=66.90  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=49.2

Q ss_pred             CCCCcceEEEccCCCEEEE-EecC-----------CcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCC-EEEEE
Q 024436          108 NLSFPNGVALSEDGNYILL-AETT-----------SCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyv-a~~~-----------~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~-l~va~  172 (268)
                      .+..||+|+|+++|. ||+ +|..           ++.+++++.+.   ++...|...|  ..|.|++++||++ |||+.
T Consensus       474 ~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t---Gel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPAT---GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTT---CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCC---CeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            478899999999996 888 7753           34788887754   3456666543  3589999999996 89988


Q ss_pred             ecCC
Q 024436          173 HSRR  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ...+
T Consensus       550 QHPG  553 (592)
T 4a9v_A          550 QHPG  553 (592)
T ss_dssp             ESTT
T ss_pred             eCCC
Confidence            6554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.77  E-value=0.0044  Score=52.92  Aligned_cols=106  Identities=8%  Similarity=0.037  Sum_probs=75.4

Q ss_pred             CCCcceEEECCC---CCEEEEEeCCCeEEEEeCC--CCeE-EEEEE---------cCCCCCeeEEEeecCCcceEEEEeC
Q 024436           33 AIGPESLAFDAL---GEGPYTGVSDGRIIKWHQD--QRRW-LHFAR---------TSPNRNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        33 ~~~P~gia~~~d---G~~l~~~~~~g~I~~~~~~--g~~~-~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      -..-.+++++|+   |++++++..+|.|..|+.+  +... ..+..         ..+++.++.   ....++.|..+|.
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---s~~~dg~v~iwd~  115 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF---TASCDKTAKMWDL  115 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE---EEETTSEEEEEET
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE---EEcCCCcEEEEEc
Confidence            457899999999   6989999999999988865  3332 22211         123333332   3345688999999


Q ss_pred             CCCeEEEeecCCCCcceEEE--ccCCCEEEEEecCCcEEEEEEccCC
Q 024436           98 ATKQVTVLLGNLSFPNGVAL--SEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        98 ~~~~~~~~~~~~~~pnGia~--spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .+++.......-...+.++|  +|+++.| ++.+..+.|..|++..+
T Consensus       116 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          116 SSNQAIQIAQHDAPVKTIHWIKAPNYSCV-MTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             TTTEEEEEEECSSCEEEEEEEECSSCEEE-EEEETTSEEEEECSSCS
T ss_pred             CCCCceeeccccCceEEEEEEeCCCCCEE-EEccCCCcEEEEECCCC
Confidence            88887776666666789999  8998645 55567789999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.77  E-value=0.0022  Score=54.79  Aligned_cols=148  Identities=9%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEE-EEeC---CCeEEEEeCCCCeEEEE---EE--------cCCC---CCeeEEEee
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPY-TGVS---DGRIIKWHQDQRRWLHF---AR--------TSPN---RNHISVILS   85 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~-~~~~---~g~I~~~~~~g~~~~~~---~~--------~~~~---~~~~~~~~~   85 (268)
                      -++.+..+.-....+++++|+|..++ ++..   ++.|..|+.++......   ..        ..++   +.++.   .
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~---~   85 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLA---T   85 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEE---E
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEE---E
Confidence            44444444445789999999996554 4444   89999888654322211   11        1232   23222   3


Q ss_pred             cCCcceEEEEeCCCCe--EEEeecCCCCcceE------EEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--
Q 024436           86 GDKTGRLMKYDPATKQ--VTVLLGNLSFPNGV------ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--  155 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~--~~~~~~~~~~pnGi------a~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--  155 (268)
                      +..++.|..+|..+++  +..+.......+.+      +|+||++.|+ +....+.|..|++..+.. ....+....+  
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~-~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~  163 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIV-TGSRDGTVKVWDPRQKDD-PVANMEPVQGEN  163 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEE-EEETTSCEEEECTTSCSS-CSEEECCCTTSC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEE-EEeCCCeEEEEeCCCCCC-cceeccccCCCC
Confidence            3456778888877654  33444343445566      5678998665 555778999999875321 1222221111  


Q ss_pred             --CCCceE----EcCCCCEEEEEecCC
Q 024436          156 --FPDNIK----RSPRGGFWVGIHSRR  176 (268)
Q Consensus       156 --~Pdgia----~d~dG~l~va~~~~~  176 (268)
                        ....++    ++++|+++++....+
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~  190 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVCAGYDNG  190 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred             CCceEEEEEEeccCCCCCEEEEEccCC
Confidence              122334    678898777666554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.76  E-value=0.00056  Score=58.38  Aligned_cols=136  Identities=9%  Similarity=0.037  Sum_probs=84.2

Q ss_pred             CCcceEEECCCCC-EEEEEeCCCeEEEEeC-CCCeEEEEEE--c---------CCCCCeeEEEeecCCcceEEEEeCCC-
Q 024436           34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQ-DQRRWLHFAR--T---------SPNRNHISVILSGDKTGRLMKYDPAT-   99 (268)
Q Consensus        34 ~~P~gia~~~dG~-~l~~~~~~g~I~~~~~-~g~~~~~~~~--~---------~~~~~~~~~~~~~~~~g~v~~~d~~~-   99 (268)
                      ....+++++|+|+ .++++..+|.|..|+. ++.....+..  .         .+ ..+   ++....++.|..+|..+ 
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~---l~s~~~d~~i~iwd~~~~  132 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDK---LIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTE---EEEEETTSEEEEECHHHH
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCE---EEEEcCCCeEEEEccccc
Confidence            4688999999999 9999999999999997 6543322211  0         11 111   12333456777777653 


Q ss_pred             --------CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCceeEEEeCCCCCCceEEcC-CCCEE
Q 024436          100 --------KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIVAQLPGFPDNIKRSP-RGGFW  169 (268)
Q Consensus       100 --------~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~~~~~~l~g~Pdgia~d~-dG~l~  169 (268)
                              ++.......-.....++++|++  +++ .+..+.|..|++.. ...............+..+++.+ +|+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  209 (342)
T 1yfq_A          133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             TTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred             ccccccccCCeeeEEeeCCceEEEEecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence                    2222122233456789999986  544 45678999999875 32111111112234567899999 99877


Q ss_pred             EEEecCC
Q 024436          170 VGIHSRR  176 (268)
Q Consensus       170 va~~~~~  176 (268)
                      ++....+
T Consensus       210 ~~~~~dg  216 (342)
T 1yfq_A          210 ACSSIDG  216 (342)
T ss_dssp             EEEETTS
T ss_pred             EEEecCC
Confidence            6665554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.74  E-value=0.0078  Score=57.56  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             CCCCCeeEEEeecCC--cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC---------------cEEEE
Q 024436           74 SPNRNHISVILSGDK--TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------------CRILR  136 (268)
Q Consensus        74 ~~~~~~~~~~~~~~~--~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~---------------~~I~~  136 (268)
                      +|++.++.-.....+  ...|+.+|.++++.......-....+++|+|||+.||++....               .+|++
T Consensus       133 SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~  212 (710)
T 2xdw_A          133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY  212 (710)
T ss_dssp             CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred             CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence            455554432222222  2389999999887765321111246799999999998875432               35999


Q ss_pred             EEccCCCCCceeEEEeCC---CCCCceEEcCCCC-EEEEEe
Q 024436          137 YWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       137 ~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~-l~va~~  173 (268)
                      +++.++.... ..+.+.+   ....++++++||+ |+++..
T Consensus       213 ~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          213 HVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             EETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             EECCCCcccc-eEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            9987543211 2222322   2234789999998 444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.74  E-value=0.0018  Score=65.53  Aligned_cols=135  Identities=11%  Similarity=0.018  Sum_probs=91.0

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ....++++|+|+.++++..+|.|..++... +....+..         .++++.++.   ....++.|..+|..+++...
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~---s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI---SSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE---EECSSSBEEEEETTTTEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE---EEcCCCEEEEEECCCCceEE
Confidence            577899999999999999999999998643 32222111         122333332   33567889999998887766


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..........++++|+++ + ++-+..+.|..|++..+..  ...+..-.+....+++.++|+++++....+
T Consensus      1040 ~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A         1040 LQAHQETVKDFRLLQDSR-L-LSWSFDGTVKVWNVITGRI--ERDFTCHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp             CBCCSSCEEEEEECSSSE-E-EEEESSSEEEEEETTTTCC--CEEEECCSSCCCCEEECSSSSSCEEECCSS
T ss_pred             EecCCCcEEEEEEcCCCc-E-EEEECCCcEEEEECCCCce--eEEEcccCCcEEEEEECCCCCEEEEEcCCC
Confidence            655556677899999874 4 3555678999999975432  233332234567899999998666554443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.72  E-value=0.00015  Score=67.69  Aligned_cols=129  Identities=16%  Similarity=0.005  Sum_probs=81.2

Q ss_pred             ceEEECCCCCEEEEEeCC----CeEEEEeCCCCeEEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           37 ESLAFDALGEGPYTGVSD----GRIIKWHQDQRRWLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~----g~I~~~~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      ..++++|||+.++....+    ..|++++.++.....+         ...+|++.++. .........|+.+|.++++.+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE
Confidence            788999999988865543    6788998654322222         12356666555 222223348999999988877


Q ss_pred             EeecCCCCcceEE--------EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436          104 VLLGNLSFPNGVA--------LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       104 ~~~~~~~~pnGia--------~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      .+......+.+++        |+||| .+|++....+++..|.+ +.    ..  ....+....++++ +|++++.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~----~~--~~~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          232 DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GE----RV--EAPQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TE----EE--CCCSSEEEEEEEE-TTEEEEEEEET
T ss_pred             EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CC----ee--ccCCCceEEEEec-CCEEEEEEcCC
Confidence            3332223344566        99999 57777777788888887 41    11  1222345578888 88876654433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.72  E-value=0.023  Score=50.42  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=121.8

Q ss_pred             CEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCe-e----EEEeecCCcceEEEEe
Q 024436           24 GVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNH-I----SVILSGDKTGRLMKYD   96 (268)
Q Consensus        24 ~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~-~----~~~~~~~~~g~v~~~d   96 (268)
                      .++.+...+ ...-.+++++|||++++++..||.|..|+..... +..+... ..+.. +    ..+..+...+.+..+|
T Consensus       137 ~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~~~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          137 ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC-CCceEEEeeCCCEEEEEeCCCceeEee
Confidence            455555543 2345899999999999999999999999976432 2222110 00000 0    0112334566777777


Q ss_pred             CCCC--eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc--eeEEEeCCCCCCceEEcCCC-CEEEE
Q 024436           97 PATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQLPGFPDNIKRSPRG-GFWVG  171 (268)
Q Consensus        97 ~~~~--~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~~l~g~Pdgia~d~dG-~l~va  171 (268)
                      ....  .+..+........++.++|+|+.+ ++....+.+..|+...+....  ........+....+++.+++ ++++.
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l-~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~  294 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  294 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCee-eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence            6532  334455566677899999999855 455677889999987432111  11111122334567787765 45443


Q ss_pred             Eec-CCCcceeeeEee-Cccceeeeeccccceeeeeeccc---------cCCCcEEEEEECC-CCCEEEEEEcCCCCcee
Q 024436          172 IHS-RRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVK---------LSGNGGMAMRISE-QGNVLEILEEIGRKMWR  239 (268)
Q Consensus       172 ~~~-~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~  239 (268)
                      ..+ ....    |..+ ..+++.+..+.........++..         .... +.+...+. +++.+..+.+..+    
T Consensus       295 ~~gs~D~~----I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d-~~I~iwd~~~~~~v~~l~gH~~----  365 (420)
T 4gga_A          295 GGGTSDRH----IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ-NQLVIWKYPTMAKVAELKGHTS----  365 (420)
T ss_dssp             EECTTTCE----EEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTT-CCEEEEETTTCCEEEEECCCSS----
T ss_pred             EeecCCCE----EEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCC-CEEEEEECCCCcEEEEEcCCCC----
Confidence            332 2211    2222 24555555544332211111110         0011 22333333 4666666665443    


Q ss_pred             ceEEEEE-eCCEEEEeeCCCCeEEEEeC
Q 024436          240 SISEVEE-KDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       240 ~~s~~~~-~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      .++.+.. .+|+.+++...+..|-+-++
T Consensus       366 ~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          366 RVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            2344444 45665555555666655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.70  E-value=0.0023  Score=57.30  Aligned_cols=106  Identities=14%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             CcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcc
Q 024436           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  113 (268)
Q Consensus        35 ~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn  113 (268)
                      .-.+++++| ++++++++..||.|..|+.+.....                      .+.          .+..+-..-+
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------~~~----------~~~gH~~~V~  168 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------TFI----------KGIGAGGSIT  168 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------------------EEE----------CCCSSSCCCC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------------------eEE----------EccCCCCCEE
Confidence            467788888 5667778888888877765432100                      000          0111223346


Q ss_pred             eEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecCC
Q 024436          114 GVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       114 Gia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +|+|+| |++. +++-+..+.|..|++.+.   ....+...   ......++++++|+++++....+
T Consensus       169 ~l~f~p~~~~~-l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg  231 (435)
T 4e54_B          169 GLKFNPLNTNQ-FYASSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG  231 (435)
T ss_dssp             EEEECSSCTTE-EEEECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS
T ss_pred             EEEEeCCCCCE-EEEEeCCCEEEEeeccCC---ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC
Confidence            899998 5664 456677899999998753   22333321   12345788999998777665554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.004  Score=52.02  Aligned_cols=147  Identities=16%  Similarity=0.180  Sum_probs=87.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ....+++  +++.++++..++.|..++ .++....+..          ...+..++   ......+.|..+|.. .....
T Consensus       106 ~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l---~~~~~d~~i~i~d~~-~~~~~  178 (313)
T 3odt_A          106 NVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKF---LTASADKTIKLWQND-KVIKT  178 (313)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEE---EEEETTSCEEEEETT-EEEEE
T ss_pred             CEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEE---EEEECCCCEEEEecC-ceEEE
Confidence            4556666  678899999999999998 3332222211          11122222   223456788888854 33333


Q ss_pred             eec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeee
Q 024436          105 LLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV  183 (268)
Q Consensus       105 ~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v  183 (268)
                      +.. .....+.++++|+++  +++....+.|..|++..+.  ....+..-.+....++++++|.++.+...+.      |
T Consensus       179 ~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~------v  248 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNGDIVSCGEDRT------V  248 (313)
T ss_dssp             ECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSCEEEEETTSE------E
T ss_pred             EeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEecCCCEEEEecCCE------E
Confidence            333 445568999999996  4566678899999987432  1222222234567899999997666555443      4


Q ss_pred             EeeC-ccceeeeeccc
Q 024436          184 LSFP-WIGNVLIKLPI  198 (268)
Q Consensus       184 ~~~~-~~g~~l~~i~~  198 (268)
                      ..+. ..++.+..+..
T Consensus       249 ~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          249 RIWSKENGSLKQVITL  264 (313)
T ss_dssp             EEECTTTCCEEEEEEC
T ss_pred             EEEECCCCceeEEEec
Confidence            4443 45555555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.67  E-value=0.0002  Score=68.33  Aligned_cols=133  Identities=13%  Similarity=0.009  Sum_probs=81.9

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-------------EcCCCCCeeEEEeecC------CcceEEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA-------------RTSPNRNHISVILSGD------KTGRLMKY   95 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~------~~g~v~~~   95 (268)
                      .+..++++|||+++++ ..+|.|..++.++.......             ..+|++.++.......      ..+.++.+
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            5788999999997665 56889998886533211111             1234444443221111      13789999


Q ss_pred             eCCCCeEEEeecCCC---CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-------C----------
Q 024436           96 DPATKQVTVLLGNLS---FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-------G----------  155 (268)
Q Consensus        96 d~~~~~~~~~~~~~~---~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-------g----------  155 (268)
                      |.++++.+.+.....   ....++|||||+.|.++..  +.|++++++++.   ...+...+       |          
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCc---eEEEecCCCCCceECcccceeEEEEe
Confidence            998887755543222   2668999999987776653  689999987643   22222211       0          


Q ss_pred             --CCCceEEcCCCC-EEEEEe
Q 024436          156 --FPDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       156 --~Pdgia~d~dG~-l~va~~  173 (268)
                        ...+++++|||+ |+.+..
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~  192 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAI  192 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEE
T ss_pred             ccCcceEEECCCCCEEEEEEE
Confidence              125799999997 444443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.019  Score=49.21  Aligned_cols=138  Identities=12%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             CCcceEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCC--CCeeEEEeecCCcceEEEEeC
Q 024436           34 IGPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPN--RNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        34 ~~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~--~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      ....++++.++  +++++++..||.|..|+.+...+......            .+.  +.++   +.....+.|..+|.
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l---~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL---LVASSDGKVSVVEF  132 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE---EEEETTSEEEEEEC
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEE---EEecCCCcEEEEec
Confidence            45678999887  99999999999999988754432221111            122  2222   23345677777777


Q ss_pred             CCCe---EEEeecCCCCcceEEEcc-------------CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCC
Q 024436           98 ATKQ---VTVLLGNLSFPNGVALSE-------------DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPD  158 (268)
Q Consensus        98 ~~~~---~~~~~~~~~~pnGia~sp-------------dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pd  158 (268)
                      .++.   ...+.......+.++|+|             |++.| ++.+..+.|..|++..+.. .......+   .+...
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVR  210 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE-EEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE-EEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEe
Confidence            6542   223334445568999999             68755 5556778999999874321 11122222   23456


Q ss_pred             ceEEcCC---CCEEEEEecCC
Q 024436          159 NIKRSPR---GGFWVGIHSRR  176 (268)
Q Consensus       159 gia~d~d---G~l~va~~~~~  176 (268)
                      .++++++   |+++++....+
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTS
T ss_pred             EEEECCCCCCCCeEEEEeCCC
Confidence            8999999   77666665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.61  E-value=0.019  Score=55.21  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=54.5

Q ss_pred             ceEEECCCCCEEEEEeCC---------CeEEEEeCCCCeEE---------EEEEcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           37 ESLAFDALGEGPYTGVSD---------GRIIKWHQDQRRWL---------HFARTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~---------g~I~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ++++++|||+.++...++         +.++.++..+....         .....+|++.++. +..   .+.||.++.+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la-~~~---~~~i~~~~~~  140 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLA-YVW---NNDIYVKIEP  140 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEE-EEE---TTEEEEESST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEE-EEE---CCeEEEEECC
Confidence            447899999988776654         56667777654221         1223356665442 222   3679999988


Q ss_pred             CCeEEEeecCC-------------------CCcceEEEccCCCEEEEE
Q 024436           99 TKQVTVLLGNL-------------------SFPNGVALSEDGNYILLA  127 (268)
Q Consensus        99 ~~~~~~~~~~~-------------------~~pnGia~spdg~~lyva  127 (268)
                      +++.+.+....                   ....+++|||||++|.++
T Consensus       141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            77766553211                   222458999999988765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.005  Score=53.09  Aligned_cols=132  Identities=10%  Similarity=-0.056  Sum_probs=75.8

Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCC-CeeEEEeecCCcceEEEEeCC---------CCe-EEEee-c
Q 024436           41 FDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNR-NHISVILSGDKTGRLMKYDPA---------TKQ-VTVLL-G  107 (268)
Q Consensus        41 ~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~~g~v~~~d~~---------~~~-~~~~~-~  107 (268)
                      +.+|+++++++..||.|..|+.. ++....+....-.. .+...++....++.|..++.+         +++ ++... .
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            34578889999999999999864 44333322110000 000003344455666665444         333 22222 2


Q ss_pred             CCCCcceEEEcc--CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEecCC
Q 024436          108 NLSFPNGVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       108 ~~~~pnGia~sp--dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .-...+.++++|  ++++ +++-+..+.|..|++..+.   ......  .......++++++|+++++....+
T Consensus       124 ~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDS---QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             CSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSC---EEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCc---EEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            223467899999  9974 4566678999999997532   221121  222467889999999877765554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.59  E-value=0.0083  Score=52.65  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             CcceEEECC-CCCEEEEEeCCCeEEEEeCC--CCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQD--QRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~-dG~~l~~~~~~g~I~~~~~~--g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ....+++.+ ++++++++..|+.|..|+..  +.....+..         ..|++.++   ..+..++.|..+|..+++.
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l---~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF---GTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE---EEECSSSCEEEEETTTTEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE---EEEcCCCeEEEEECCCCcE
Confidence            456677866 88999999999999999864  222222211         12333332   2445678888999887765


Q ss_pred             EEeecC--------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----CCCCCceEEcCCCCEEE
Q 024436          103 TVLLGN--------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL----PGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       103 ~~~~~~--------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----~g~Pdgia~d~dG~l~v  170 (268)
                      ......        ......++|+|+|++|+ +...++.|+.|+...+.  ....+..+    .+....+++++||++++
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALC  360 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred             EEEecccccccccccCceEEEEECCCCCEEE-EEECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEE
Confidence            443321        12357899999998654 56678999999986422  11122111    23466789999999777


Q ss_pred             EEecCC
Q 024436          171 GIHSRR  176 (268)
Q Consensus       171 a~~~~~  176 (268)
                      +....+
T Consensus       361 sgs~D~  366 (380)
T 3iz6_a          361 TGSWDK  366 (380)
T ss_dssp             EECTTS
T ss_pred             EeeCCC
Confidence            665444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.59  E-value=0.0075  Score=53.36  Aligned_cols=141  Identities=13%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             EecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CC-eEEEE----------------EEcCCCC-CeeEEEeecCC
Q 024436           28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QR-RWLHF----------------ARTSPNR-NHISVILSGDK   88 (268)
Q Consensus        28 i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~-~~~~~----------------~~~~~~~-~~~~~~~~~~~   88 (268)
                      +..+......+++++|+|++++++ .|+.|..|+.. +. .+..+                ....+.. .++   ..+..
T Consensus       172 ~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l---~s~~~  247 (447)
T 3dw8_B          172 FANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF---VYSSS  247 (447)
T ss_dssp             ECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE---EEEET
T ss_pred             eccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE---EEEeC
Confidence            333444568899999999999888 79999999877 22 11111                0011222 222   23345


Q ss_pred             cceEEEEeCCCCeE-----EEeecCCC------------CcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCceeEE
Q 024436           89 TGRLMKYDPATKQV-----TVLLGNLS------------FPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIV  150 (268)
Q Consensus        89 ~g~v~~~d~~~~~~-----~~~~~~~~------------~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~~~~  150 (268)
                      ++.|..+|..+++.     ..+.....            ..+.++|+|||++|+.+. . +.|..|++.. +..  ...+
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~--~~~~  323 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRP--VETY  323 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSC--SCCE
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCccc--ccee
Confidence            67888888876653     33333322            567999999998776554 4 9999999863 221  1112


Q ss_pred             EeCCCC---------------CCceEEcCCCCEEEEEecCC
Q 024436          151 AQLPGF---------------PDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       151 ~~l~g~---------------Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..-...               .-.++++++|+++++....+
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg  364 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN  364 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence            110000               11289999998776665554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.58  E-value=0.033  Score=48.75  Aligned_cols=142  Identities=14%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEE---------cCCCCC------------------------
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFAR---------TSPNRN------------------------   78 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~---------~~~~~~------------------------   78 (268)
                      -..-.+++++|+|++++++..|+.|..|+..... ...+..         ..+++.                        
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~  145 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG  145 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred             ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence            4567899999999999999999999999864321 111110         001100                        


Q ss_pred             -------------------ee----EEEeecCCcceEEEEeCCCCeEEEee------cCCCCcceEEEcc-CCCEEEEEe
Q 024436           79 -------------------HI----SVILSGDKTGRLMKYDPATKQVTVLL------GNLSFPNGVALSE-DGNYILLAE  128 (268)
Q Consensus        79 -------------------~~----~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~pnGia~sp-dg~~lyva~  128 (268)
                                         |.    ..+..+..++.|..+|..+++.....      ........+++++ +++ ++++.
T Consensus       146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sg  224 (380)
T 3iz6_a          146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN-MFISG  224 (380)
T ss_dssp             SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC-EEEEE
T ss_pred             CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC-EEEEE
Confidence                               00    01234445677888888776554332      1222345788876 665 66787


Q ss_pred             cCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          129 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       129 ~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +..+.|..|++.... .....+..-.+....+++.|+|+++++....+
T Consensus       225 s~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          225 SCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             ETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             ECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence            888999999986321 11222222224567899999999877766554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.57  E-value=0.018  Score=50.99  Aligned_cols=139  Identities=12%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce----EEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR----WLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~----~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      .....++.+.|+|+.+++...|+.|..++... +.    ....         ....+....+.....+..++.|..+|..
T Consensus       230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence            45678899999999999999999998887532 10    0111         0112222233333344567889999998


Q ss_pred             CCeEEEeecCCCCcceEEEccCCCEEEEEec-CCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEec
Q 024436           99 TKQVTVLLGNLSFPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~~~~~~~pnGia~spdg~~lyva~~-~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~  174 (268)
                      +++.............+.++|+++.++++.. ..+.|..|++...     +.+..+.   +....++++|||+++++...
T Consensus       310 t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-----~~v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          310 SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-----cEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            8887766666667889999999998877653 5689999998742     2223332   23567899999987666554


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       385 D~  386 (420)
T 4gga_A          385 DE  386 (420)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.0079  Score=56.45  Aligned_cols=133  Identities=11%  Similarity=0.115  Sum_probs=83.8

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-------------EcCCCCCeeEEEeecCCcceEEEEeCCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA-------------RTSPNRNHISVILSGDKTGRLMKYDPAT   99 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~v~~~d~~~   99 (268)
                      -....+++++|||+++.+...+|.|..|+.++ .+..+.             .-+|++.++.   .+...|.|..+|..+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LA---sgs~DGtVkIWd~~~  160 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIV---VGNEDGELQFFSIRK  160 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEE---EEETTSEEEEEECCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEE---EEcCCCEEEEEECCC
Confidence            34688999999999999999999999998443 111111             1234444443   234567888888876


Q ss_pred             Ce--------EEEee----cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEeCC-CCCCceEEcCC
Q 024436          100 KQ--------VTVLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLP-GFPDNIKRSPR  165 (268)
Q Consensus       100 ~~--------~~~~~----~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~l~-g~Pdgia~d~d  165 (268)
                      ++        +..+.    ++...-..++|+|||   +++.+..+.|+.|+++++...+ ...+.... .....+++.  
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            64        24442    223466799999998   4566678999999998654211 12232111 246788887  


Q ss_pred             CCEEEEEec
Q 024436          166 GGFWVGIHS  174 (268)
Q Consensus       166 G~l~va~~~  174 (268)
                      |+..++...
T Consensus       236 g~~LASa~~  244 (588)
T 2j04_A          236 DYKVVLTCP  244 (588)
T ss_dssp             TTEEEEECS
T ss_pred             CCEEEEEeC
Confidence            455454443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.01  Score=58.66  Aligned_cols=138  Identities=11%  Similarity=0.036  Sum_probs=85.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ....+++++|+|++++++..||.|..|+..+.......         ...+ +.++   .....++.|..+|.++++...
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L---~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYL---VVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEE---EEEETTCEEEEEETTTCSEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEE---EEEECcCeEEEEECCCCcEEE
Confidence            36899999999999999999999999987654211110         0012 1222   233456788888887665443


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE--E----EeC---CCCCCceEEcCCC-CEEEEEec
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI--V----AQL---PGFPDNIKRSPRG-GFWVGIHS  174 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~--~----~~l---~g~Pdgia~d~dG-~l~va~~~  174 (268)
                      ....-...+.++|+||+++|+++ +.++.|..|++++........  +    ..+   .+....++++|++ +++++...
T Consensus        94 ~~~~~~~V~~v~~sp~g~~l~sg-s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A           94 TVFVPGKITSIDTDASLDWMLIG-LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             EEECSSCEEEEECCTTCSEEEEE-ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred             EEcCCCCEEEEEECCCCCEEEEE-cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence            33333456789999999977765 467899999997543210000  0    011   2346789999964 44444444


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       173 dg  174 (902)
T 2oaj_A          173 YV  174 (902)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.52  E-value=0.045  Score=48.77  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=87.6

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEc-----------CCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFART-----------SPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      -.....+++.+++ .++++..||.|..|+.+.. ....+...           .++..   .+.....++.|..+|..++
T Consensus       162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~---~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE---EEEEEETTSCEEEEECCCC
T ss_pred             CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC---EEEEEcCCCcEEEeeCCCC
Confidence            3468889999988 6889999999999987543 22222100           01111   1223345667777776644


Q ss_pred             eEE------------------------EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC
Q 024436          101 QVT------------------------VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF  156 (268)
Q Consensus       101 ~~~------------------------~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~  156 (268)
                      +..                        .+...  ...-.+++++++.|+ +.+..+.|..|++....  ....+..-.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~~~--~~~~~~~~~~~  312 (464)
T 3v7d_B          238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MASVRTVSGHGNIVV-SGSYDNTLIVWDVAQMK--CLYILSGHTDR  312 (464)
T ss_dssp             CCC------CCSSEEESCGGGCTTEEEEECCC--SSCEEEEEEETTEEE-EEETTSCEEEEETTTTE--EEEEECCCSSC
T ss_pred             cccccccccCCcceEeeccCCCeEEEEEccCc--cceEEEEcCCCCEEE-EEeCCCeEEEEECCCCc--EEEEecCCCCC
Confidence            311                        11111  122345678888665 44567899999987421  11122111234


Q ss_pred             CCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccceeeeeccc
Q 024436          157 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI  198 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~  198 (268)
                      ...++++++|+.+++....+.     |..+. ..++.+..+..
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTT-----IRIWDLENGELMYTLQG  350 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSC-----EEEEETTTTEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcEEEEEeC
Confidence            567899999987776665543     44443 45666665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.48  E-value=0.011  Score=52.11  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCC-------EEEEEecC--CcEEEEEEccCCCCCceeEEEeC--C-
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN-------YILLAETT--SCRILRYWLKTSKAGTIEIVAQL--P-  154 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~-------~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l--~-  154 (268)
                      .+.+.|+.||.+ |+....... ..+|++.+-|+=+       .+|+++..  +++|..|+++... +....+..+  | 
T Consensus        47 ~k~~gL~Vydl~-G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-~~l~~i~~~~~pv  123 (355)
T 3amr_A           47 NKKSGLVVYSLD-GKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-GTLQSMTDPDHPI  123 (355)
T ss_dssp             ETTTEEEEEETT-SCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-CCEEECSCTTSCE
T ss_pred             cCCCCEEEEcCC-CcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-CceeeccccccCc
Confidence            345789999997 555444433 5689998888422       57999998  9999999886321 123333221  2 


Q ss_pred             ----CCCCceEE--cCC-CCEEEEEecCCCcceeeeEeeC----ccceeeeecccc
Q 024436          155 ----GFPDNIKR--SPR-GGFWVGIHSRRKGISKLVLSFP----WIGNVLIKLPID  199 (268)
Q Consensus       155 ----g~Pdgia~--d~d-G~l~va~~~~~~~~~~~v~~~~----~~g~~l~~i~~~  199 (268)
                          ..|.|+|+  ++. |.+|+-......++.+|-....    ..++++++++.+
T Consensus       124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC
Confidence                46999999  875 5544433333334333322222    234455555554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.47  E-value=0.031  Score=50.35  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=84.6

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCC---------C---Ce--------------EEEEEEcCCCCCeeEEEe-ecC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD---------Q---RR--------------WLHFARTSPNRNHISVIL-SGD   87 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~---------g---~~--------------~~~~~~~~~~~~~~~~~~-~~~   87 (268)
                      ..+-+++++++.+++++..++ +..++.+         +   ..              +... ..++++.++.... .+.
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL-ALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEE-EECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEE-EEcCCCCEEEEEEeccC
Confidence            456789999999888887666 4332210         0   00              1111 1123333333211 345


Q ss_pred             CcceEEEEeCCCC-----e-------EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--
Q 024436           88 KTGRLMKYDPATK-----Q-------VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--  153 (268)
Q Consensus        88 ~~g~v~~~d~~~~-----~-------~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--  153 (268)
                      ..+.|..||..++     +       ...+..+-...+.++|+|++..++++.+..+.|..|++..+    .......  
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----~~~~~~~~~  191 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----VKVCATLPS  191 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----EEEEEEECG
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----cceeeccCC
Confidence            5677777776432     0       12222233457899999984346677778899999998743    1122111  


Q ss_pred             CCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeec
Q 024436          154 PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL  196 (268)
Q Consensus       154 ~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i  196 (268)
                      ......++++++|+.+++....+.     |..+...++....+
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~-----v~iwd~~~~~~~~~  229 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGT-----VVQYLPTLQEKKVI  229 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSC-----EEEECTTCCEEEEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCc-----EEEEccCCcccccc
Confidence            235778999999975554444443     55554444444433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.44  E-value=0.038  Score=46.06  Aligned_cols=139  Identities=12%  Similarity=0.104  Sum_probs=90.7

Q ss_pred             CCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce----EEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR----WLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~----~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ......+++.++|+.++++..++.|..++... +.    ....         ....+..........+...+.|..+|..
T Consensus       150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~  229 (318)
T 4ggc_A          150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  229 (318)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred             cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence            45678889999999999999999999887642 10    0000         0111222223333345566778888887


Q ss_pred             CCeEEEeecCCCCcceEEEccCCCEEEEEe-cCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEec
Q 024436           99 TKQVTVLLGNLSFPNGVALSEDGNYILLAE-TTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        99 ~~~~~~~~~~~~~pnGia~spdg~~lyva~-~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~  174 (268)
                      +...............+.++|+++.++++. ...+.|..|++..+.     .+..+.   +....+++.+||+++++...
T Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-----~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          230 SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-----KVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             TCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            666655555556678899999999887764 356899999987432     222332   23567899999987666554


Q ss_pred             CC
Q 024436          175 RR  176 (268)
Q Consensus       175 ~~  176 (268)
                      .+
T Consensus       305 D~  306 (318)
T 4ggc_A          305 DE  306 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0027  Score=59.64  Aligned_cols=131  Identities=9%  Similarity=-0.029  Sum_probs=68.9

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeE-EEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHIS-VILSGDKTGRLMKYDPATKQVTVLLGNLSFP  112 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  112 (268)
                      ..-++++++|||++++++..|+.|.  ++...  ..+   .+....+. ..+...+..+.+.++...+....-..+-...
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V   88 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYA--KDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP   88 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCC--SCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--ccccc--cee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE
Confidence            4688999999999888888888886  32211  101   00000011 1111111112222221111111011223456


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eC---CCCCCceEEcCCCCEEEEEecCC
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QL---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..++|||||++|- +-+.++.|..|+.++    ....+. +.   ....+.+++.|||++.++....+
T Consensus        89 ~~vawSPdG~~LA-s~s~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A           89 RVCKPSPIDDWMA-VLSNNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             EEEEECSSSSCEE-EEETTSCEEEEETTE----EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred             EEEEECCCCCEEE-EEeCCCcEEEEeCCc----eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence            7999999998665 556778899998542    111111 10   01256799999998655555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.42  E-value=0.023  Score=54.17  Aligned_cols=99  Identities=13%  Similarity=0.005  Sum_probs=57.7

Q ss_pred             CCCCCeeEEEee--cCCcceEEEEeCCCCeEEEeecCCCC--cceEEEccCCCEEEEEecC------------CcEEEEE
Q 024436           74 SPNRNHISVILS--GDKTGRLMKYDPATKQVTVLLGNLSF--PNGVALSEDGNYILLAETT------------SCRILRY  137 (268)
Q Consensus        74 ~~~~~~~~~~~~--~~~~g~v~~~d~~~~~~~~~~~~~~~--pnGia~spdg~~lyva~~~------------~~~I~~~  137 (268)
                      +|++.++.-...  +.....|+.+|.++++... ...+..  ..+++|+|||+.||++...            ..+|+++
T Consensus       129 SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          129 SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            455554432222  2234689999999887531 111111  2689999999988887542            2459999


Q ss_pred             EccCCCCCceeEEEeCCC---CCCceEEcCCCC-EEEEEec
Q 024436          138 WLKTSKAGTIEIVAQLPG---FPDNIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       138 ~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~-l~va~~~  174 (268)
                      ++.++.... ..+...+.   .-.++++++||+ |.++...
T Consensus       208 ~l~t~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          208 TLGTEPSKD-TVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             ETTSCGGGC-EEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             ECCCCchhc-eEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence            987543211 22323222   234788999997 4444443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.38  E-value=0.051  Score=46.09  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=28.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR   66 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~   66 (268)
                      ....+++++|+|+.++++..+|.|..|+.+...
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  119 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ  119 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence            468899999999999999999999999876543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.026  Score=49.86  Aligned_cols=107  Identities=11%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeC----CCCeEEEEE-------EcCC--CCCe-----------eEEEeecCCc
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ----DQRRWLHFA-------RTSP--NRNH-----------ISVILSGDKT   89 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~----~g~~~~~~~-------~~~~--~~~~-----------~~~~~~~~~~   89 (268)
                      ....++++.|+++.++++..|+.|..|+.    .++......       ...+  ...+           ...+.....+
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            36889999999999999999999988875    343211110       0111  0000           1112234456


Q ss_pred             ceEEEEeCCCCeEEEeec---CCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           90 GRLMKYDPATKQVTVLLG---NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        90 g~v~~~d~~~~~~~~~~~---~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +.|..+|..+++......   .....+.++|+|++++|+ +.+..+.|..|++..
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI-LGTTRGIIDIWDIRF  245 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE-EEETTSCEEEEETTT
T ss_pred             CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE-EEcCCCeEEEEEcCC
Confidence            889999988776544333   345678999999998665 555678999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.31  E-value=0.01  Score=50.70  Aligned_cols=142  Identities=13%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CCcceEEECCC--CCEEEEEeCCCeEEEEeCCCC-eEEEEEEc------------CCCC--------------CeeEEEe
Q 024436           34 IGPESLAFDAL--GEGPYTGVSDGRIIKWHQDQR-RWLHFART------------SPNR--------------NHISVIL   84 (268)
Q Consensus        34 ~~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g~-~~~~~~~~------------~~~~--------------~~~~~~~   84 (268)
                      ....+++++|+  |.+++++..|+.|..++..+. .+......            .+..              ++...+.
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence            35789999998  888899999999988875432 12111000            1110              0001122


Q ss_pred             ecCCcceEEEEeCCCC-e---EEEeecCCCCcceEEEccCC----CEEEEEecCCcEEEEEEccCCCCC--ceeEEEeCC
Q 024436           85 SGDKTGRLMKYDPATK-Q---VTVLLGNLSFPNGVALSEDG----NYILLAETTSCRILRYWLKTSKAG--TIEIVAQLP  154 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~-~---~~~~~~~~~~pnGia~spdg----~~lyva~~~~~~I~~~~~~~~~~g--~~~~~~~l~  154 (268)
                      .+..++.|..+|..++ +   ...+..+-..-+.++|+|++    + ++++-+..++|..|+++....+  ....+....
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~  262 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN  262 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECS
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhhcCC
Confidence            3334455555554422 2   22233344456899999986    4 5567778899999998752111  112222233


Q ss_pred             CCCCceEEcCCCCEEEEEecCC
Q 024436          155 GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +....+++.|+|+++++....+
T Consensus       263 ~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          263 DVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             SCEEEEEECTTTCCEEEEESSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCC
Confidence            4456788999998666554443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.31  E-value=0.056  Score=45.04  Aligned_cols=117  Identities=17%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             CCEEEEecCCC-CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCee-----EEEeecCCcceEEEE
Q 024436           23 QGVVQYQIEGA-IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNHI-----SVILSGDKTGRLMKY   95 (268)
Q Consensus        23 ~~~~~i~~~~~-~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~~-----~~~~~~~~~g~v~~~   95 (268)
                      +.++++...+- ..-.+++++|+|+.++++..|+.|..|+..... ...+... ......     ..+..+...+.+..+
T Consensus        56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h-~~~~~~~~~~~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSYILSSGSRSGHIHHH  134 (318)
T ss_dssp             CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc-cceEEEeecCCCEEEEEecCCceEee
Confidence            35566665432 335789999999999999999999999876442 2222111 110000     011122344555555


Q ss_pred             eCCCC--eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           96 DPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        96 d~~~~--~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      +..++  .+..+.........++++++++.| ++....+.|..|++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSC
T ss_pred             ecCCCceeEEEEcCccCceEEEEEcCCCCEE-EEEecCcceeEEECCC
Confidence            55433  234445556667889999999855 4556778999999874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.28  E-value=0.049  Score=52.45  Aligned_cols=132  Identities=19%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC----CCeeEEEeecC--------CcceEEEEeCCC----
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN----RNHISVILSGD--------KTGRLMKYDPAT----   99 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~--------~~g~v~~~d~~~----   99 (268)
                      ..++..+++|++++ +. ++.+.++++.+..+..+......    .+++..+.++.        ..+.|+++|+++    
T Consensus       375 v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            56788899999555 55 46899999876655554321111    12233333321        123566776542    


Q ss_pred             --CeEE---Ee--ecCC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CC--CCCCceEEcCCC
Q 024436          100 --KQVT---VL--LGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LP--GFPDNIKRSPRG  166 (268)
Q Consensus       100 --~~~~---~~--~~~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~--g~Pdgia~d~dG  166 (268)
                        +...   ..  ..++  ...+.|..+++|+ ||+.....+.|.+|+.+..   ....+..  +.  ..+..+..|.+|
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g  528 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDG  528 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTS
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCC
Confidence              1111   11  1122  1345788898886 9983333466999998642   2233211  21  246678999999


Q ss_pred             CEEEEEe
Q 024436          167 GFWVGIH  173 (268)
Q Consensus       167 ~l~va~~  173 (268)
                      +||++..
T Consensus       529 ~lWigt~  535 (758)
T 3ott_A          529 LLWVGFH  535 (758)
T ss_dssp             CEEEEET
T ss_pred             CEEEEec
Confidence            9999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.28  E-value=0.01  Score=50.03  Aligned_cols=142  Identities=11%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             CcceEEECCC--CCEEEEEeCCCeEEEEeCCCC-eE--EEEE---------EcCCCCC----------eeEEEeecCCcc
Q 024436           35 GPESLAFDAL--GEGPYTGVSDGRIIKWHQDQR-RW--LHFA---------RTSPNRN----------HISVILSGDKTG   90 (268)
Q Consensus        35 ~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g~-~~--~~~~---------~~~~~~~----------~~~~~~~~~~~g   90 (268)
                      ...+++++|+  |.+++++..|+.|..++.... ..  ..+.         ...+...          ....+..+..++
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence            5678999997  888999999999988875432 11  1111         0112100          000122233345


Q ss_pred             eEEEEeCCCCe----E-EEeecCCCCcceEEEccCC--CEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCCce
Q 024436           91 RLMKYDPATKQ----V-TVLLGNLSFPNGVALSEDG--NYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNI  160 (268)
Q Consensus        91 ~v~~~d~~~~~----~-~~~~~~~~~pnGia~spdg--~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pdgi  160 (268)
                      .|..+|..+++    . ..+..+-...+.++|+|++  ..++++-+..+.|..|+++............   .++....+
T Consensus       181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~  260 (297)
T 2pm7_B          181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA  260 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE
T ss_pred             cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEE
Confidence            55555443332    2 2333444556899999996  3566777888999999987532111111111   12334567


Q ss_pred             EEcCCCCEEEEEecCC
Q 024436          161 KRSPRGGFWVGIHSRR  176 (268)
Q Consensus       161 a~d~dG~l~va~~~~~  176 (268)
                      +++++|+++++....+
T Consensus       261 ~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          261 SWSLSGNVLALSGGDN  276 (297)
T ss_dssp             EECSSSCCEEEEETTS
T ss_pred             EECCCCCEEEEEcCCC
Confidence            8999998766655544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.27  E-value=0.078  Score=46.03  Aligned_cols=205  Identities=14%  Similarity=0.157  Sum_probs=103.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCC-CCe-EEEEEEcCCC--CCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCC------
Q 024436           44 LGEGPYTGVSDGRIIKWHQD-QRR-WLHFARTSPN--RNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSF------  111 (268)
Q Consensus        44 dG~~l~~~~~~g~I~~~~~~-g~~-~~~~~~~~~~--~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~------  111 (268)
                      ++..+|+...++.|+.++++ |+. |..- .....  .+..  ..++.....+.|+.+|+++|+..-.......      
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            34457788889999999975 653 3221 11100  0100  0122234568999999988875422211110      


Q ss_pred             cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCC---C--------CCceEEcCCCCEEEEEecCCCcc
Q 024436          112 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPG---F--------PDNIKRSPRGGFWVGIHSRRKGI  179 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g---~--------Pdgia~d~dG~l~va~~~~~~~~  179 (268)
                      ....++. ++ .+|+. +..+.|+.++..+++    ..+. ..+.   .        .....+..+|.+|++...+.   
T Consensus       181 ~~~~~~~-~~-~v~~g-~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~---  250 (376)
T 3q7m_A          181 ESAPTTA-FG-AAVVG-GDNGRVSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN---  250 (376)
T ss_dssp             CCCCEEE-TT-EEEEC-CTTTEEEEEETTTCC----EEEEEECCC-----------CCCCCCEEETTEEEEECTTSC---
T ss_pred             CCCcEEE-CC-EEEEE-cCCCEEEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE---
Confidence            1233444 44 68775 456789999986432    1111 1110   0        11111223578888875543   


Q ss_pred             eeeeEee-Cccceeeeecccccee-ee----eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436          180 SKLVLSF-PWIGNVLIKLPIDIVK-IH----SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW  252 (268)
Q Consensus       180 ~~~v~~~-~~~g~~l~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly  252 (268)
                         +..+ ..+|+.+.+.+.+... +.    .++-. ... +.++.+|+ +|+.+.......+..   .+..+..+++||
T Consensus       251 ---l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~-~~~-g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~~~~l~  322 (376)
T 3q7m_A          251 ---LTALDLRSGQIMWKRELGSVNDFIVDGNRIYLV-DQN-DRVMALTIDGGVTLWTQSDLLHRL---LTSPVLYNGNLV  322 (376)
T ss_dssp             ---EEEEETTTCCEEEEECCCCEEEEEEETTEEEEE-ETT-CCEEEEETTTCCEEEEECTTTTSC---CCCCEEETTEEE
T ss_pred             ---EEEEECCCCcEEeeccCCCCCCceEECCEEEEE-cCC-CeEEEEECCCCcEEEeecccCCCc---ccCCEEECCEEE
Confidence               3333 4578877665543211 00    01100 111 34666776 477766654322222   223345689999


Q ss_pred             EeeCCCCeEEEEeCCC
Q 024436          253 IGSVNMPYAGLYNYSS  268 (268)
Q Consensus       253 v~s~~~~~v~~~~~~~  268 (268)
                      +++. +..|..++.++
T Consensus       323 v~~~-~g~l~~~d~~t  337 (376)
T 3q7m_A          323 VGDS-EGYLHWINVED  337 (376)
T ss_dssp             EECT-TSEEEEEETTT
T ss_pred             EEeC-CCeEEEEECCC
Confidence            9986 35677777653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.27  E-value=0.0013  Score=60.37  Aligned_cols=71  Identities=15%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             eEEEeecCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccCCCCCceeEEEeC------------CCCCCceEEcCC--
Q 024436          101 QVTVLLGNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQL------------PGFPDNIKRSPR--  165 (268)
Q Consensus       101 ~~~~~~~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l------------~g~Pdgia~d~d--  165 (268)
                      +++++++++..|-+|++.|||+ +|||++. .++|++++.++...  ...+.++            .+.+-||+++|+  
T Consensus         5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~   81 (463)
T 2wg3_C            5 CIQEVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK   81 (463)
T ss_dssp             EEEEEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred             EEEEeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence            5677888999999999999995 6999997 48999997665321  1112221            134668999986  


Q ss_pred             --CCEEEEEec
Q 024436          166 --GGFWVGIHS  174 (268)
Q Consensus       166 --G~l~va~~~  174 (268)
                        |.||++...
T Consensus        82 ~n~~lYv~yt~   92 (463)
T 2wg3_C           82 KNGKLYVSYTT   92 (463)
T ss_dssp             HHCEEEEEEEE
T ss_pred             CCCEEEEEEeC
Confidence              889998753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.27  E-value=0.055  Score=51.63  Aligned_cols=160  Identities=11%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             cceEEECCCCCEEEEEeCCC----------------eEEEEeCCCCe---EEEE-----------EEcCCCCCeeEEEee
Q 024436           36 PESLAFDALGEGPYTGVSDG----------------RIIKWHQDQRR---WLHF-----------ARTSPNRNHISVILS   85 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g----------------~I~~~~~~g~~---~~~~-----------~~~~~~~~~~~~~~~   85 (268)
                      ..+++++|||+.++....++                +|++++.++..   ...+           ...++++.++.....
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            46799999999777655443                38888765421   1111           122455555443322


Q ss_pred             cCC--cceEEEEeCCC------C--eEEEeecCCCCcceEEEccCCCEEEEEecC---CcEEEEEEccCCCCCceeEEEe
Q 024436           86 GDK--TGRLMKYDPAT------K--QVTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIEIVAQ  152 (268)
Q Consensus        86 ~~~--~g~v~~~d~~~------~--~~~~~~~~~~~pnGia~spdg~~lyva~~~---~~~I~~~~~~~~~~g~~~~~~~  152 (268)
                      ...  ...|+.+|.++      +  +.+.+...... ..-.++|||+.||+....   +.+|++++++++.....+.+..
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence            121  56899999875      4  45556544332 233689999999887543   3489999987542112233322


Q ss_pred             -CC-CCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc-cceeeeecccc
Q 024436          153 -LP-GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPID  199 (268)
Q Consensus       153 -l~-g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~-~g~~l~~i~~~  199 (268)
                       .+ ....++++.+++.++++.......   -|..+.. +|+.+..++.+
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~---~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKN---TLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEE---EEEEEETTTCCEEEEECCC
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEE---EEEEEECCCCCEEEecCCC
Confidence             11 124467777666776665544321   1333433 56666666554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.26  E-value=0.058  Score=47.46  Aligned_cols=121  Identities=12%  Similarity=0.021  Sum_probs=65.4

Q ss_pred             CcceEEECCC----CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEee-cCCcceEEEEeCCCCeE-EEeecC
Q 024436           35 GPESLAFDAL----GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILS-GDKTGRLMKYDPATKQV-TVLLGN  108 (268)
Q Consensus        35 ~P~gia~~~d----G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~~d~~~~~~-~~~~~~  108 (268)
                      .-+.++++||    +..++.+.++.+|+.+ ++|+.+...             .. ..+.-+++-+.++ |+. ..+...
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss-------------~~g~d~~V~~~~~s~d-G~~~~s~~~~  177 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSS-------------GTLSDQQVEVMTFAED-GGGKENQFLM  177 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEE-------------SSSTTCEEEEEEECTT-SCEEEEEEEC
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEec-------------ccCCCCcEEEEEECCC-CceeeeeccC
Confidence            3567788888    7777765555555544 233321110             01 1233345556555 443 333333


Q ss_pred             CCCcceEEEcc---CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc---eEEcCCCCEEEEEe
Q 024436          109 LSFPNGVALSE---DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRGGFWVGIH  173 (268)
Q Consensus       109 ~~~pnGia~sp---dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg---ia~d~dG~l~va~~  173 (268)
                      -..-+-++|+|   |+. ++++.+..+.|..|+++.++.  ...+..-......   +++.|+|.++++..
T Consensus       178 ~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~--l~tL~g~~~~v~~v~~vafSpdG~~lvs~s  245 (356)
T 2w18_A          178 PPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQL--LKKMHIDDSYQASVCHKAYSEMGLLFIVLS  245 (356)
T ss_dssp             CCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCE--EEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred             CCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcE--EEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence            34456789999   666 778888999999999985331  2333211111223   47889998776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.26  E-value=0.031  Score=47.52  Aligned_cols=110  Identities=14%  Similarity=0.036  Sum_probs=67.8

Q ss_pred             EecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEEc---------CC--CCCeeEEEeecCCcceEE
Q 024436           28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFART---------SP--NRNHISVILSGDKTGRLM   93 (268)
Q Consensus        28 i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~~~---------~~--~~~~~~~~~~~~~~g~v~   93 (268)
                      +..+.-..-..++++|+|++++++..|+.|..|+.....   ...+...         .+  ++.++   .....++.|.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l---~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL---ASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE---EEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE---EEEECCCEEE
Confidence            333433456889999999999999999999988864321   1111110         11  01111   2334567788


Q ss_pred             EEeCCCCe---EEEeecCCCCcceEEEccC--CCEEEEEecCCcEEEEEEccC
Q 024436           94 KYDPATKQ---VTVLLGNLSFPNGVALSED--GNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        94 ~~d~~~~~---~~~~~~~~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+|..+++   ...+...-...+.++|+|+  |+ ++++.+..+.|..|++..
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECS
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCC
Confidence            88887653   2233344456789999998  65 556777788999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.082  Score=45.17  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEEc------------CCCCCeeEEEeecCC
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFART------------SPNRNHISVILSGDK   88 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~--~~~~~~~------------~~~~~~~~~~~~~~~   88 (268)
                      +.+.++.-. -..-.+++++++  +++++..|+.|..++.....  .......            .|++.++   .....
T Consensus         5 ~~~~~~~~h-~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l---as~s~   78 (330)
T 2hes_X            5 NLIKSLKLY-KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL---AAGSF   78 (330)
T ss_dssp             EEEEEEECC-SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE---EEEET
T ss_pred             ccceeeccC-CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE---EEEeC
Confidence            345555533 235677888877  78889999999988875421  1111101            1222222   12234


Q ss_pred             cceEEEEeCCC-------CeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCC
Q 024436           89 TGRLMKYDPAT-------KQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFP  157 (268)
Q Consensus        89 ~g~v~~~d~~~-------~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~P  157 (268)
                      ++.|..+|..+       .+. ..+...-..-+.++|+|||++| ++-+..+.|..|++.... ...+....+.   ...
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-as~s~D~~v~iwd~~~~~-~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL-ATCSRDKSVWIWETDESG-EEYECISVLQEHSQDV  156 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEE-EEEETTSCEEEEECCTTC-CCCEEEEEECCCSSCE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEeccCCC-CCeEEEEEeccCCCce
Confidence            55666666532       122 2233344456789999999855 566678899999984211 0112222222   335


Q ss_pred             CceEEcCCCCEEEEEecCC
Q 024436          158 DNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       158 dgia~d~dG~l~va~~~~~  176 (268)
                      ..+++.|+|+++++....+
T Consensus       157 ~~v~~~p~~~~l~s~s~D~  175 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDD  175 (330)
T ss_dssp             EEEEECSSSSEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEcCCC
Confidence            6789999998777665554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.20  E-value=0.0057  Score=58.23  Aligned_cols=101  Identities=13%  Similarity=0.013  Sum_probs=66.8

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-------------EcCCCCCeeEEEeec------CCcceEEEEe
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA-------------RTSPNRNHISVILSG------DKTGRLMKYD   96 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~------~~~g~v~~~d   96 (268)
                      +.+++++|||+++++ ..++.|+.++.++.....+.             ..+|++.++.-....      ...+.|+.+|
T Consensus        18 ~~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            457899999975554 46899999997654322221             124555544322111      1247899999


Q ss_pred             CCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           97 PATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        97 ~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .++++.   +.+.   ...+.++|||||+.|.++.  .+.|++++++++
T Consensus        97 ~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g  140 (719)
T 1z68_A           97 LSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGD  140 (719)
T ss_dssp             TTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             CCCCccccceecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCC
Confidence            988876   4432   3467899999999887764  479999998753

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.19  E-value=0.0053  Score=57.86  Aligned_cols=68  Identities=16%  Similarity=0.305  Sum_probs=46.7

Q ss_pred             CCCCcceEEEccCCCEEEEEecC---------------------CcEEEEEEccCCCCC----ceeEEEe--CC------
Q 024436          108 NLSFPNGVALSEDGNYILLAETT---------------------SCRILRYWLKTSKAG----TIEIVAQ--LP------  154 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva~~~---------------------~~~I~~~~~~~~~~g----~~~~~~~--l~------  154 (268)
                      .+..|.||.++|....+|++-+.                     .+.|++|..++....    ..+.+..  -|      
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            35678999999854569998764                     257999988643211    1122211  00      


Q ss_pred             --------------CCCCceEEcCCCCEEEEEecC
Q 024436          155 --------------GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       155 --------------g~Pdgia~d~dG~l~va~~~~  175 (268)
                                    ..||||++|++|+||++.-.+
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~  496 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGD  496 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCC
T ss_pred             ccccccccCCCCCccCCcceEECCCCCEEEEecCC
Confidence                          259999999999999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.18  E-value=0.093  Score=49.95  Aligned_cols=157  Identities=8%  Similarity=0.009  Sum_probs=87.3

Q ss_pred             ceEEECCCCCEEEEEeCCC-------------eEEEEeCCCCe---EEEE-----------EEcCCCCCeeEEEeecC-C
Q 024436           37 ESLAFDALGEGPYTGVSDG-------------RIIKWHQDQRR---WLHF-----------ARTSPNRNHISVILSGD-K   88 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~g-------------~I~~~~~~g~~---~~~~-----------~~~~~~~~~~~~~~~~~-~   88 (268)
                      .+++++|||+.++....+.             +|++++.++..   ...+           ...++++.++....... .
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            6789999999777665443             38888765321   1111           12245555544332223 4


Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---CCcEEEEEEccCCCCCceeEEEe-CC-CCCCceEEc
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---TSCRILRYWLKTSKAGTIEIVAQ-LP-GFPDNIKRS  163 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---~~~~I~~~~~~~~~~g~~~~~~~-l~-g~Pdgia~d  163 (268)
                      +..||.++..+++.+.+...........+ +||+ +|+...   .+.+|++++++++.......+.. -+ ....+++++
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            56899998766777777655444455555 7887 777543   35799999987532211233221 11 123456776


Q ss_pred             CCCCEEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          164 PRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       164 ~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                       ++.++++.......  + |..+...|+.+..++.+
T Consensus       329 -~~~lv~~~~~dg~~--~-l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          329 -GGHLSLEYLKDATS--E-VRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             -TTEEEEEEEETTEE--E-EEEEETTCCEEEECCCS
T ss_pred             -CCEEEEEEEECCEE--E-EEEEeCCCCeeEEecCC
Confidence             56676665544321  1 33344446555555543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.16  E-value=0.067  Score=51.38  Aligned_cols=98  Identities=11%  Similarity=0.014  Sum_probs=56.1

Q ss_pred             CCCCCeeEEEeecCC--cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC-------------CcEEEEEE
Q 024436           74 SPNRNHISVILSGDK--TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-------------SCRILRYW  138 (268)
Q Consensus        74 ~~~~~~~~~~~~~~~--~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~-------------~~~I~~~~  138 (268)
                      +|++.++.-.....+  ...|+.+|.++|+.......-....+++|+|| +.||++...             ..+|++++
T Consensus       171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~  249 (741)
T 1yr2_A          171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHR  249 (741)
T ss_dssp             CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEE
T ss_pred             CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEE
Confidence            566555432222222  25799999998876543111111257999999 888887643             23699999


Q ss_pred             ccCCCCCceeEEEeCCCC---CCceEEcCCCC-EEEEEe
Q 024436          139 LKTSKAGTIEIVAQLPGF---PDNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       139 ~~~~~~g~~~~~~~l~g~---Pdgia~d~dG~-l~va~~  173 (268)
                      +.++.... ..+...+..   -.++.+++||+ |.+...
T Consensus       250 lgt~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          250 LGTPQSAD-QPVFATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             TTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             CCCCchhC-EEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            86432211 223332222   34788999997 444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.15  E-value=0.11  Score=48.64  Aligned_cols=42  Identities=19%  Similarity=0.138  Sum_probs=26.2

Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCC
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNM  258 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~  258 (268)
                      +.++++|. +|+++..+..+.+ .... ..+...+|++|++...+
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~-~~~~-p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSG-GIGS-PMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSC-CCSC-CEEEEETTEEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCC-cEee-eEEEEECCEEEEEEECC
Confidence            56778886 5888888876543 2222 22234788999876533

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.12  E-value=0.026  Score=47.31  Aligned_cols=105  Identities=12%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             CCcceEEECCC--CCEEEEEeCCCeEEEEeCCC-Ce---EEE--EEEc-----------------CCC---CCeeEEEee
Q 024436           34 IGPESLAFDAL--GEGPYTGVSDGRIIKWHQDQ-RR---WLH--FART-----------------SPN---RNHISVILS   85 (268)
Q Consensus        34 ~~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g-~~---~~~--~~~~-----------------~~~---~~~~~~~~~   85 (268)
                      ....+++++|+  +++++++..++.|..|+... +.   +..  -...                 .+.   ..+   +..
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---l~~  187 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK---LAV  187 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE---EEE
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE---EEE
Confidence            46789999999  99999999999999998643 21   110  0000                 011   111   112


Q ss_pred             cCCcceEEEEeCCCCeEEE---eecCCCCcceEEEccCCC---EEEEEecCCcEEEEEEccC
Q 024436           86 GDKTGRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGN---YILLAETTSCRILRYWLKT  141 (268)
Q Consensus        86 ~~~~g~v~~~d~~~~~~~~---~~~~~~~pnGia~spdg~---~lyva~~~~~~I~~~~~~~  141 (268)
                      ....+.+..++..+++...   +...-...+.++|+|++.   .++++....+.|..|++..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            2344555555555455432   223334567999999982   3556667788999999874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.11  E-value=0.2  Score=47.85  Aligned_cols=65  Identities=26%  Similarity=0.492  Sum_probs=41.7

Q ss_pred             ceEEECCCCCEEEEEeCCC-------------------eEEEEeCC-CCe-EEEEEEcCCC---------CCee------
Q 024436           37 ESLAFDALGEGPYTGVSDG-------------------RIIKWHQD-QRR-WLHFARTSPN---------RNHI------   80 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~g-------------------~I~~~~~~-g~~-~~~~~~~~~~---------~~~~------   80 (268)
                      ..++++++++++|+...++                   .|+.++++ |+. |. +. ..+.         .+.+      
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~-~~-~~~~d~wd~~~~~~p~l~~~~~d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH-YQ-ETPGDNWDYTSTQPMILADIKIA  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-EE-SSTTCCSCCCCCSCCEEEEEEET
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE-Ee-cCCCcccccccCCCcEEEecccC
Confidence            4678999999999887654                   48888875 542 32 11 1111         1111      


Q ss_pred             ----EEEeecCCcceEEEEeCCCCeEE
Q 024436           81 ----SVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        81 ----~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                          ..++....+|.++.+|.++|++.
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEe
Confidence                22345567899999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.043  Score=54.24  Aligned_cols=136  Identities=13%  Similarity=0.058  Sum_probs=86.3

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEE--------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFA--------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~--------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ..-..++|.| |+++++...|+.|..|+.+. +....+.        ...++..++.   .+..+|.|..+|.++++...
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~---sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWML---IGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEE---EEETTSCEEEEETTTTEEEE
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEE---EEcCCCcEEEEECCCCcccc
Confidence            3568899999 88888888999999999754 3322221        1123334332   33457888899988776532


Q ss_pred             e------------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--C----------------
Q 024436          105 L------------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--P----------------  154 (268)
Q Consensus       105 ~------------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~----------------  154 (268)
                      .            .......+.++|+|++..++++....+.| .|++..+..  ...+..-  +                
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccC
Confidence            1            11234567899999754455566777889 999875321  1122110  0                


Q ss_pred             CCCCceEEcCCCCEEEEEecCC
Q 024436          155 GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +....+++.++|+++++....+
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg  233 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDN  233 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTC
T ss_pred             CCeEEEEEcCCCCEEEEEECCC
Confidence            2245789999999877776655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.10  E-value=0.038  Score=47.74  Aligned_cols=133  Identities=9%  Similarity=0.004  Sum_probs=75.6

Q ss_pred             CcceEEECC-CCCEE-EEEeCC-----CeEEEEeCCCCeEEEE-----------EEcCCCCCeeEEEeecCCc--ceEEE
Q 024436           35 GPESLAFDA-LGEGP-YTGVSD-----GRIIKWHQDQRRWLHF-----------ARTSPNRNHISVILSGDKT--GRLMK   94 (268)
Q Consensus        35 ~P~gia~~~-dG~~l-~~~~~~-----g~I~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~~~~~~--g~v~~   94 (268)
                      ....++++| ||+.+ ++....     .+|+.++.++..+..+           ...++++.++.-.......  +.|+.
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            356788999 77744 444322     4788888765421111           1224444443222122222  45999


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEcc-CCCEEEEEec---------------CCcEEEEEEccCCCCCceeEEEeCCC---
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSE-DGNYILLAET---------------TSCRILRYWLKTSKAGTIEIVAQLPG---  155 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~sp-dg~~lyva~~---------------~~~~I~~~~~~~~~~g~~~~~~~l~g---  155 (268)
                      +|.++++.+.+... ...+ ++|+| ||+.++++..               ....|++++++++..   ..+...+.   
T Consensus       269 ~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~  343 (396)
T 3c5m_A          269 ANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA---QKLCKHSTSWD  343 (396)
T ss_dssp             ECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC---CEEEECCCCCC
T ss_pred             EECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce---EEccCCCCccc
Confidence            99988877665432 1223 89999 9996665432               346899999876432   23332221   


Q ss_pred             --------CCCceEEcCCCC-EEEEE
Q 024436          156 --------FPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus       156 --------~Pdgia~d~dG~-l~va~  172 (268)
                              .+..+++++||+ |+.+.
T Consensus       344 ~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          344 VLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cccccccCCCCCceEccCCCeEEEEe
Confidence                    145578899997 44443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.05  E-value=0.041  Score=47.75  Aligned_cols=142  Identities=9%  Similarity=0.012  Sum_probs=83.0

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC--eE---EE---EEEcCCCCCeeEEEeecCCcceEEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RW---LH---FARTSPNRNHISVILSGDKTGRLMKY   95 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~--~~---~~---~~~~~~~~~~~~~~~~~~~~g~v~~~   95 (268)
                      .+..+..+.  ...++++++++  +++. .+++|..++....  .+   ..   ....++  .+ ..+..+...|.|..+
T Consensus        93 ~~~~~~~~~--~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~-la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           93 DVSRIKVDA--PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GL-LVYSNEFNLGQIHIT  164 (355)
T ss_dssp             EEEEEECSS--CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TE-EEEEESSCTTCEEEE
T ss_pred             EEEEEECCC--ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cE-EEEeCCCcCcEEEEE
Confidence            455555443  56777777765  3332 3677777775432  11   10   000111  11 112125677888888


Q ss_pred             eCCCCe-----------------EEEeecCCCCcceEEEccCCCEEEEEecCCcE-EEEEEccCCCCCceeEEEe--CCC
Q 024436           96 DPATKQ-----------------VTVLLGNLSFPNGVALSEDGNYILLAETTSCR-ILRYWLKTSKAGTIEIVAQ--LPG  155 (268)
Q Consensus        96 d~~~~~-----------------~~~~~~~~~~pnGia~spdg~~lyva~~~~~~-I~~~~~~~~~~g~~~~~~~--l~g  155 (268)
                      |..+++                 +..+..+-...+.++|+|||++| ++.+..+. |..|++..+.  ....+..  -.+
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l-~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~  241 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV-ATCSQDGTIIRVFKTEDGV--LVREFRRGLDRA  241 (355)
T ss_dssp             ECCC------------------CCEEECCCSSCEEEEEECTTSSEE-EEEETTCSEEEEEETTTCC--EEEEEECTTCCS
T ss_pred             ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE-EEEeCCCCEEEEEECCCCc--EEEEEEcCCCCC
Confidence            887654                 44455555567899999999855 56667787 9999987432  1233331  223


Q ss_pred             CCCceEEcCCCCEEEEEecCC
Q 024436          156 FPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       156 ~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ....++++++|+++++....+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTC
T ss_pred             cEEEEEECCCCCEEEEEECCC
Confidence            456789999999777666554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.041  Score=53.05  Aligned_cols=138  Identities=12%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             CCcceEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCC--CCeeEEEeecCCcceEEEEeC
Q 024436           34 IGPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPN--RNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        34 ~~P~gia~~~d--G~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~--~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      ....+++++++  |+.++++..||.|..|+.++..+......            .+.  +.++   ..+..+|.|..+|.
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l---~sgs~dg~I~vwdl  130 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL---LVASSDGKVSVVEF  130 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE---EEEETTSEEEEEEC
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEE---EEEeCCCcEEEEEe
Confidence            45678999988  99999999999999998755432221111            122  2222   23345677888887


Q ss_pred             CCCe---EEEeecCCCCcceEEEcc-------------CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCC
Q 024436           98 ATKQ---VTVLLGNLSFPNGVALSE-------------DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPD  158 (268)
Q Consensus        98 ~~~~---~~~~~~~~~~pnGia~sp-------------dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pd  158 (268)
                      .++.   ...+.......+.++++|             |++.| ++.+..+.|..|++..+.. .......+   .+...
T Consensus       131 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l-~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVR  208 (753)
T ss_dssp             CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE-EEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEE
T ss_pred             ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE-EEEECCCeEEEEeccCCcc-cceeeeeecCCCCcEE
Confidence            6542   223334445567899999             57655 5556778999999875321 11222222   23467


Q ss_pred             ceEEcCC---CCEEEEEecCC
Q 024436          159 NIKRSPR---GGFWVGIHSRR  176 (268)
Q Consensus       159 gia~d~d---G~l~va~~~~~  176 (268)
                      .+++.|+   |+++++....+
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSS
T ss_pred             EEEeccCCCCCCEEEEEecCC
Confidence            8899999   77766665554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.92  E-value=0.17  Score=43.71  Aligned_cols=100  Identities=9%  Similarity=-0.030  Sum_probs=52.1

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc--------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--------SPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      ..-.+++|+|||++++++..++ +..++.+..........        ....+++.  +.+...+.|..+|..+++....
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~v~iWd~~~~~~~~~   96 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVA--FVTGVKEVVHIWDDVKKQDVSR   96 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEE--EECSSTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEE--EEECCccEEEEEECCCCcEEEE
Confidence            4678999999999888877664 44555432211111111        11112221  2334456888888877765443


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      .........+++++++  ++++.  .++|+.|++.
T Consensus        97 ~~~~~~v~~v~~~~~~--~~~~~--~~~i~i~d~~  127 (355)
T 3vu4_A           97 IKVDAPVKDLFLSREF--IVVSY--GDVISVFKFG  127 (355)
T ss_dssp             EECSSCEEEEEECSSE--EEEEE--TTEEEEEESS
T ss_pred             EECCCceEEEEEcCCE--EEEEE--cCEEEEEECC
Confidence            3333334566666553  33332  2345555543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.072  Score=49.33  Aligned_cols=135  Identities=9%  Similarity=-0.025  Sum_probs=81.3

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCe-EEEE----------E-EcCCCC-CeeEEEeecCCcceEEEEeCCCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRR-WLHF----------A-RTSPNR-NHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~-~~~~----------~-~~~~~~-~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      ...++++++++ .++++..||.|..|+.. +.. ...+          + ..++++ .++   .+...++.|..+|..++
T Consensus       268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l---aS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV---STVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE---EEEETTSEEEEECGGGH
T ss_pred             CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE---EEeccCCeEEEEECCCC
Confidence            46688998875 68999999999999875 321 1111          1 112222 222   23345567777777644


Q ss_pred             eEE-EeecCC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVT-VLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~-~~~~~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +.. .+....  ...+.++|+||++. +++....+.|..|++.....  ...+..-.+....+++.|+|+++++....+
T Consensus       344 ~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          344 ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             HHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            321 122222  12467999999985 56666778899999875321  122332223467889999998766655554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.87  E-value=0.22  Score=44.09  Aligned_cols=209  Identities=10%  Similarity=0.084  Sum_probs=106.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcC-------CCCCeeEEEeecCCcceEEEEeCCCCeEEEe-ecCC
Q 024436           39 LAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTS-------PNRNHISVILSGDKTGRLMKYDPATKQVTVL-LGNL  109 (268)
Q Consensus        39 ia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~-------~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~  109 (268)
                      .++..+|+.++++..+|.|..++... +....+....       .++.+   +..+..+|.|..+|..+++.... ....
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---l~sg~~dg~i~vwd~~~~~~~~~~~~h~  213 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDVNTGEMLNTLIHHC  213 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSE---EEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCE---EEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            36667899999999999999998754 3222221100       01111   22344567888888877765433 3333


Q ss_pred             CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCce-eEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-
Q 024436          110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI-EIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-  187 (268)
Q Consensus       110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~-~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-  187 (268)
                      .....+++++  +.| ++.+..+.|..|++..+..... ..+..-.+....+++  +|+.+++....+.     |..+. 
T Consensus       214 ~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-----i~vwd~  283 (435)
T 1p22_A          214 EAVLHLRFNN--GMM-VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT-----IKVWNT  283 (435)
T ss_dssp             SCEEEEECCT--TEE-EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE-----EEEEET
T ss_pred             CcEEEEEEcC--CEE-EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe-----EEEEEC
Confidence            4456788864  344 5666789999999975322111 111111122334555  5666555554442     33332 


Q ss_pred             ccceeeeeccccceeeeeecc------ccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCe
Q 024436          188 WIGNVLIKLPIDIVKIHSSLV------KLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY  260 (268)
Q Consensus       188 ~~g~~l~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~  260 (268)
                      ..++.+..+......+.++..      ..... +.+...|. .|+.+..+....    ..++.+...+..|+.|+ .+..
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~sg~-~dg~  357 (435)
T 1p22_A          284 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSD-NTIRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSGA-YDGK  357 (435)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETTEEEEEETT-SCEEEEETTTCCEEEEECCCS----SCEEEEECCSSEEEEEE-TTSC
T ss_pred             CcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCc----CcEEEEEecCCEEEEEe-CCCc
Confidence            445555544432222222110      00111 22344444 366666665432    22344444444455554 5566


Q ss_pred             EEEEeC
Q 024436          261 AGLYNY  266 (268)
Q Consensus       261 v~~~~~  266 (268)
                      |.+.++
T Consensus       358 i~vwd~  363 (435)
T 1p22_A          358 IKVWDL  363 (435)
T ss_dssp             EEEEEH
T ss_pred             EEEEEC
Confidence            776654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.78  E-value=0.22  Score=47.62  Aligned_cols=66  Identities=24%  Similarity=0.360  Sum_probs=41.4

Q ss_pred             eEEECCCCCEEEEEeCCCe-------------------EEEEeCC-CCe-EEEEEEcCC-------CCCeeE--------
Q 024436           38 SLAFDALGEGPYTGVSDGR-------------------IIKWHQD-QRR-WLHFARTSP-------NRNHIS--------   81 (268)
Q Consensus        38 gia~~~dG~~l~~~~~~g~-------------------I~~~~~~-g~~-~~~~~~~~~-------~~~~~~--------   81 (268)
                      .++++|+++++|+...++.                   |+.++++ |+. |........       ....+.        
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5789999999999887764                   8899875 543 322110000       000111        


Q ss_pred             --EEeecCCcceEEEEeCCCCeEE
Q 024436           82 --VILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        82 --~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                        .+.....+|.++.+|.++|++.
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEe
Confidence              2334567899999999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.69  E-value=0.27  Score=42.57  Aligned_cols=200  Identities=12%  Similarity=0.077  Sum_probs=99.2

Q ss_pred             CCEEEEEeCCCeEEEEeC-CCCe-EEEEEEcCC------CCCeeE-------EEeecCCcceEEEEeCCCCeEEEeec-C
Q 024436           45 GEGPYTGVSDGRIIKWHQ-DQRR-WLHFARTSP------NRNHIS-------VILSGDKTGRLMKYDPATKQVTVLLG-N  108 (268)
Q Consensus        45 G~~l~~~~~~g~I~~~~~-~g~~-~~~~~~~~~------~~~~~~-------~~~~~~~~g~v~~~d~~~~~~~~~~~-~  108 (268)
                      ++.+|+...++.|+.+++ +|+. |..-.....      ......       .++.....+.|+.+|+++|+..--.. .
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            455777778899999998 4653 322110000      111000       11122345789999998887542211 1


Q ss_pred             CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCC------CCceEEcCCCCEEEEEecCCCccee
Q 024436          109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGF------PDNIKRSPRGGFWVGIHSRRKGISK  181 (268)
Q Consensus       109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~------Pdgia~d~dG~l~va~~~~~~~~~~  181 (268)
                      .......++. ++ .+|+.. ..+.|+.++..+++    ..+. ..+..      ....+++ +|.+|++...+.     
T Consensus       133 ~~~~~~p~~~-~~-~v~v~~-~~g~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~-----  199 (376)
T 3q7m_A          133 GEALSRPVVS-DG-LVLIHT-SNGQLQALNEADGA----VKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGR-----  199 (376)
T ss_dssp             SCCCSCCEEE-TT-EEEEEC-TTSEEEEEETTTCC----EEEEEECCC-----CCCCCCEEE-TTEEEECCTTTE-----
T ss_pred             CceEcCCEEE-CC-EEEEEc-CCCeEEEEECCCCc----EEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCE-----
Confidence            1111122333 44 688764 56789999986432    1121 11110      1233444 567888654432     


Q ss_pred             eeEe-eCccceeeeeccccce---------------eee---eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceece
Q 024436          182 LVLS-FPWIGNVLIKLPIDIV---------------KIH---SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       182 ~v~~-~~~~g~~l~~i~~~~~---------------~~~---~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~  241 (268)
                       +.. ...+|+.+.+.+.+..               +..   .++-. ... +.+..+++ +|+.+.....      ...
T Consensus       200 -l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~~~-g~l~~~d~~tG~~~w~~~~------~~~  270 (376)
T 3q7m_A          200 -VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-AYN-GNLTALDLRSGQIMWKREL------GSV  270 (376)
T ss_dssp             -EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE-CTT-SCEEEEETTTCCEEEEECC------CCE
T ss_pred             -EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-ecC-cEEEEEECCCCcEEeeccC------CCC
Confidence             333 3457777655543210               000   00000 111 23555555 4665544432      123


Q ss_pred             EEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          242 SEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       242 s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      ...+..+++||+++. +..|..++.+
T Consensus       271 ~~~~~~~~~l~~~~~-~g~l~~~d~~  295 (376)
T 3q7m_A          271 NDFIVDGNRIYLVDQ-NDRVMALTID  295 (376)
T ss_dssp             EEEEEETTEEEEEET-TCCEEEEETT
T ss_pred             CCceEECCEEEEEcC-CCeEEEEECC
Confidence            445667999999986 4467777764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.11  Score=47.98  Aligned_cols=136  Identities=11%  Similarity=0.004  Sum_probs=83.9

Q ss_pred             CcceEEECCC------CCEEEEEeCCCeEEEEeCCCCe-----E-------EEEE---------EcCCCCCeeEEEeecC
Q 024436           35 GPESLAFDAL------GEGPYTGVSDGRIIKWHQDQRR-----W-------LHFA---------RTSPNRNHISVILSGD   87 (268)
Q Consensus        35 ~P~gia~~~d------G~~l~~~~~~g~I~~~~~~g~~-----~-------~~~~---------~~~~~~~~~~~~~~~~   87 (268)
                      ....+++.|+      +++++++..||.|..|+.....     .       ..+.         ...++ .   .+..+.
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~---~lasgs  284 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T---TVVCGF  284 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S---EEEEEE
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C---eEEEEe
Confidence            4678999986      5788989999999988864321     0       0110         00111 1   133445


Q ss_pred             CcceEEEEeCCCCeE--EEeecCCCCcceE--EEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCC-CCCCceE
Q 024436           88 KTGRLMKYDPATKQV--TVLLGNLSFPNGV--ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLP-GFPDNIK  161 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~--~~~~~~~~~pnGi--a~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~-g~Pdgia  161 (268)
                      .+|.|..+|..+++.  ..+...-..-+.|  +++|+|..++++-+..+.|..|++.....  ...+. ... +....++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceE
Confidence            678888888875422  2233444455778  57888734677888899999999864221  11221 222 1245789


Q ss_pred             EcCCCCEEEEEecCC
Q 024436          162 RSPRGGFWVGIHSRR  176 (268)
Q Consensus       162 ~d~dG~l~va~~~~~  176 (268)
                      +.|+|..+++....+
T Consensus       363 fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          363 YCPQIYSYIYSDGAS  377 (524)
T ss_dssp             EETTTTEEEEECSSS
T ss_pred             eCCCcCeEEEeCCCC
Confidence            999998877765554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.63  E-value=0.45  Score=45.59  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             ceEEECCCCCEEEEEeCC--------------CeEEEEeCCCCe---EEEE-----------EEcCCCCCeeEEEeecC-
Q 024436           37 ESLAFDALGEGPYTGVSD--------------GRIIKWHQDQRR---WLHF-----------ARTSPNRNHISVILSGD-   87 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~--------------g~I~~~~~~g~~---~~~~-----------~~~~~~~~~~~~~~~~~-   87 (268)
                      .+++++|| +.++....+              .+|++++..+..   ...+           ...++++.++....... 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46789999 655554432              247777754321   1111           12345555554333222 


Q ss_pred             -CcceEEEEeCCCC--e-EEEeecCCCCcceEEEccCCCEEEEEec---CCcEEEEEEccCCCCCceeEEEe-CCCCCCc
Q 024436           88 -KTGRLMKYDPATK--Q-VTVLLGNLSFPNGVALSEDGNYILLAET---TSCRILRYWLKTSKAGTIEIVAQ-LPGFPDN  159 (268)
Q Consensus        88 -~~g~v~~~d~~~~--~-~~~~~~~~~~pnGia~spdg~~lyva~~---~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdg  159 (268)
                       .+..|+.+|.+++  + .+.+......-... ++|||+.||+...   .+.+|++++++++. +....+.. ......+
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLES  368 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEE
Confidence             3558999988766  5 56665544333334 4589998888643   24689999987532 22222221 1122335


Q ss_pred             eEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          160 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       160 ia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      ++++ ++.++++.......   -|..+...|+....++.+
T Consensus       369 ~~~~-~~~lv~~~~~dg~~---~l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKS---QVLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEE---EEEEEETTSCEEEECBCS
T ss_pred             EEEE-CCEEEEEEEECCEE---EEEEEeCCCCceeeccCC
Confidence            5666 45666655443321   133344456655555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.60  E-value=0.44  Score=45.33  Aligned_cols=66  Identities=20%  Similarity=0.364  Sum_probs=40.6

Q ss_pred             eEEECCCCCEEEEEeCCC-------------------eEEEEeCC-CCe-EEEEEEcCC-------CCCeeE--------
Q 024436           38 SLAFDALGEGPYTGVSDG-------------------RIIKWHQD-QRR-WLHFARTSP-------NRNHIS--------   81 (268)
Q Consensus        38 gia~~~dG~~l~~~~~~g-------------------~I~~~~~~-g~~-~~~~~~~~~-------~~~~~~--------   81 (268)
                      .++++++++++|+...++                   .|+.++++ |+. |..-.....       ....+.        
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            478999988899887765                   38888864 542 322111000       011111        


Q ss_pred             --EEeecCCcceEEEEeCCCCeEE
Q 024436           82 --VILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        82 --~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                        .++....+|.+|.+|.++|++.
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEe
Confidence              2344567899999999988764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.48  E-value=0.0093  Score=53.80  Aligned_cols=102  Identities=11%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             CcceEEECCCCCEEE----EEeCCCeEEEEeCCC---------CeEEEEE------------EcCCC-CCeeEEEeecCC
Q 024436           35 GPESLAFDALGEGPY----TGVSDGRIIKWHQDQ---------RRWLHFA------------RTSPN-RNHISVILSGDK   88 (268)
Q Consensus        35 ~P~gia~~~dG~~l~----~~~~~g~I~~~~~~g---------~~~~~~~------------~~~~~-~~~~~~~~~~~~   88 (268)
                      ...+++++|+|++++    ++..++.|..|+...         +.+..+.            ...+. +.++   .....
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l---as~s~  170 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV---AVCLA  170 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE---EEEET
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE---EEEEC
Confidence            589999999999888    445678888876421         1001111            11222 2222   12335


Q ss_pred             cceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436           89 TGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  140 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~  140 (268)
                      +|.|..+|..+++... ....-...+.++|+|||++|+++. ..+.|..|++.
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~  222 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT  222 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC
Confidence            6778888877664322 222334578999999999776554 67899999987

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.48  E-value=0.57  Score=43.85  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=24.8

Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeC
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV  256 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~  256 (268)
                      +.+.++|. +|+.+..+..+.+- ...+. +...+|++||+..
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~-~a~P~-~y~~~G~qYv~~~  547 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGI-VSPPI-TWEQDGEQYLGVT  547 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCCE-EEEETTEEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCc-ccCce-EEEECCEEEEEEE
Confidence            55777776 58888888776442 22222 2247888888743

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.40  E-value=0.036  Score=51.66  Aligned_cols=91  Identities=20%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             eEEEEeCCC-----CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC------CCC-Cc-eeEEEe--CCC
Q 024436           91 RLMKYDPAT-----KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT------SKA-GT-IEIVAQ--LPG  155 (268)
Q Consensus        91 ~v~~~d~~~-----~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~------~~~-g~-~~~~~~--l~g  155 (268)
                      .+-++|+..     ..+......-..|.|+.++|||+++|++.-.+.++.+|+.+.      .++ .. ..++++  +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466787763     124445555688999999999999999999999999999872      111 11 122333  223


Q ss_pred             CCCceEEcCCCCEEEEEecCCCcceee
Q 024436          156 FPDNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       156 ~Pdgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      .|--.++|++|+.|.+.+-.. .+.+|
T Consensus       379 GPlHt~Fd~~G~aYTtlfidS-qvvkW  404 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDS-QVVKW  404 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTT-EEEEE
T ss_pred             cccEEEECCCCceEeeeeecc-eEEEE
Confidence            599999999999999998776 44444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.38  E-value=0.015  Score=49.70  Aligned_cols=76  Identities=9%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC----CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT----SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  164 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~----~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~  164 (268)
                      .+.|+.+|.++++.+.+    .....++|+|||++|+++...    ...|++++++++   ....+...+. ...+++.|
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~~l~~~~~-~~~~~wsp  113 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSKKILEAKN-IRSLEWNE  113 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEEEEEEESE-EEEEEECT
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceEEEEcCCC-ccceeECC
Confidence            46799999988877666    446689999999988776532    346999998753   2333333334 67889999


Q ss_pred             CCC-EEEEE
Q 024436          165 RGG-FWVGI  172 (268)
Q Consensus       165 dG~-l~va~  172 (268)
                      ||+ |+.+.
T Consensus       114 dg~~l~~~~  122 (347)
T 2gop_A          114 DSRKLLIVG  122 (347)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            997 55544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.34  E-value=0.68  Score=44.38  Aligned_cols=132  Identities=18%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEEcC-C---CCCeeEEEeecC-------CcceEEEEeCCCCe
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTS-P---NRNHISVILSGD-------KTGRLMKYDPATKQ  101 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~~~~~~~~~-~---~~~~~~~~~~~~-------~~g~v~~~d~~~~~  101 (268)
                      -.++..+++|++++ +.. +.+.++++...   .+..+.... +   ..+.+..+.++.       ..+.|+++|+++++
T Consensus       326 v~~i~~D~~g~lWi-Gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~  403 (758)
T 3ott_A          326 FYSLFRDSKGFYWF-GGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQ  403 (758)
T ss_dssp             EEEEEECTTCCEEE-EET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTE
T ss_pred             EEEEEEcCCCCEEE-eeC-CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCc
Confidence            46778889999554 444 45778865431   111111000 0   001122222111       02478999998887


Q ss_pred             EEEee--cC-----CCCcceEEEccCCCEEEEEecCCcEEEEEEccCC---CCCce---eEEEeCCCC----CCceEEcC
Q 024436          102 VTVLL--GN-----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS---KAGTI---EIVAQLPGF----PDNIKRSP  164 (268)
Q Consensus       102 ~~~~~--~~-----~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~---~~g~~---~~~~~l~g~----Pdgia~d~  164 (268)
                      .+...  ..     ......|..+++| .||++- ..+-|++|+.+..   ..+..   ..+....+.    ...|..|+
T Consensus       404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT-~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  481 (758)
T 3ott_A          404 FIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWIST-CLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN  481 (758)
T ss_dssp             EEEEEEECCC--CBSSSEEEEEECTTS-EEEEEE-SSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT
T ss_pred             EEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEE-CCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC
Confidence            76543  11     1123467777777 599874 3456888886521   00001   111111223    34588999


Q ss_pred             CCCEEEE
Q 024436          165 RGGFWVG  171 (268)
Q Consensus       165 dG~l~va  171 (268)
                      +|+||++
T Consensus       482 ~g~lWi~  488 (758)
T 3ott_A          482 EGNVWVL  488 (758)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEE
Confidence            9999993

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.27  E-value=0.11  Score=46.16  Aligned_cols=61  Identities=16%  Similarity=0.293  Sum_probs=46.2

Q ss_pred             eEEEc-cCCCEEEEEecCCcEEEEEEccC-CC-CCceeEEEeCC--CCCCceEEcCCCCEEEEEecC
Q 024436          114 GVALS-EDGNYILLAETTSCRILRYWLKT-SK-AGTIEIVAQLP--GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       114 Gia~s-pdg~~lyva~~~~~~I~~~~~~~-~~-~g~~~~~~~l~--g~Pdgia~d~dG~l~va~~~~  175 (268)
                      +++++ .+| .||+++...+.|.+|+.++ .. ..+...+.+-+  ..|+++.+|.+|.||+....-
T Consensus       279 ~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l  344 (381)
T 3q6k_A          279 ALAYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGF  344 (381)
T ss_dssp             EEEECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSC
T ss_pred             eEEEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcc
Confidence            56776 556 7999999999999999876 32 23455655422  369999999999999987543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.24  E-value=0.022  Score=53.63  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             CCCCcceEEEccCCCEEEEEecC------------CcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCC-EEEEE
Q 024436          108 NLSFPNGVALSEDGNYILLAETT------------SCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGG-FWVGI  172 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva~~~------------~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~-l~va~  172 (268)
                      .+..|-+|+|+|+|+ |||++-.            ++.++.++...   ++...|...|  .-..|++++|||+ |||..
T Consensus       474 ~f~~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~---g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPAT---GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTT---CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CccCCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCC---CeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            467889999999997 6666432            35677776543   4566676543  2356999999996 88876


Q ss_pred             ecCC
Q 024436          173 HSRR  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ...+
T Consensus       550 QHPG  553 (592)
T 3zwu_A          550 QHPG  553 (592)
T ss_dssp             ESTT
T ss_pred             ECCC
Confidence            5443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.14  E-value=0.54  Score=44.69  Aligned_cols=82  Identities=9%  Similarity=-0.017  Sum_probs=49.6

Q ss_pred             cceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecC------------CcEEEEEEccCCCCCceeEEEeCCC
Q 024436           89 TGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETT------------SCRILRYWLKTSKAGTIEIVAQLPG  155 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~------------~~~I~~~~~~~~~~g~~~~~~~l~g  155 (268)
                      ...|+.+|.++|+..... ... ...+++|+ ||+.||++...            ..+|+++++.++.. ....+.+.+.
T Consensus       154 ~~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~  230 (693)
T 3iuj_A          154 WREIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-DDRLVFGAIP  230 (693)
T ss_dssp             EEEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-GCEEEESCSG
T ss_pred             eEEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-cceEEEecCC
Confidence            357899999988754431 111 12478999 99999887644            25799999864321 2223333222


Q ss_pred             -CC---CceEEcCCCC-EEEEEe
Q 024436          156 -FP---DNIKRSPRGG-FWVGIH  173 (268)
Q Consensus       156 -~P---dgia~d~dG~-l~va~~  173 (268)
                       .|   .++.+++||+ |++...
T Consensus       231 ~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          231 AQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             GGCCSEEEEEECTTSCEEEEEEE
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEc
Confidence             12   3678899998 444443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.11  E-value=0.64  Score=40.78  Aligned_cols=137  Identities=12%  Similarity=-0.022  Sum_probs=73.6

Q ss_pred             ceEEECC---CCCEEEEEeCCCeEEEEeCC-CCeEEEEEE------------cCCCCCeeE---------EEeecCCcce
Q 024436           37 ESLAFDA---LGEGPYTGVSDGRIIKWHQD-QRRWLHFAR------------TSPNRNHIS---------VILSGDKTGR   91 (268)
Q Consensus        37 ~gia~~~---dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~------------~~~~~~~~~---------~~~~~~~~g~   91 (268)
                      +.++|++   ++++++++..|+.|..|+.. |+.+..+..            .+|++.+..         +..++...+.
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            4467777   77888888999999999976 554444421            112221111         1123345567


Q ss_pred             EEEEeCCCCeEEEeec----CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCC-ceEEcCCC
Q 024436           92 LMKYDPATKQVTVLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD-NIKRSPRG  166 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~----~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd-gia~d~dG  166 (268)
                      +..+|+++++......    ....-+-+..+.++. +.++-+.++.|..||+..++.  ...+..-...+. .+++.|||
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSS
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCC
Confidence            7778888776533210    000001122222243 556777788999999975321  122211111233 37899999


Q ss_pred             CEEEEEecCC
Q 024436          167 GFWVGIHSRR  176 (268)
Q Consensus       167 ~l~va~~~~~  176 (268)
                      +++++....+
T Consensus       339 ~~LaSGS~D~  348 (356)
T 2w18_A          339 SHLLAGQKDG  348 (356)
T ss_dssp             SEEEEECTTS
T ss_pred             CEEEEEECCC
Confidence            9777665544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.06  E-value=0.71  Score=40.79  Aligned_cols=98  Identities=11%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEeec-C
Q 024436           40 AFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLLG-N  108 (268)
Q Consensus        40 a~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~  108 (268)
                      ++..++++++++..||.|..|+.... ....+...         .++.    .+..+..++.|..+|.++++...... .
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT----EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC----EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence            45557788999999999999996543 22222110         1111    12344567888888888776554443 4


Q ss_pred             CCCcceEEEc--cCCCEEEEEecCCcEEEEEEccCC
Q 024436          109 LSFPNGVALS--EDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       109 ~~~pnGia~s--pdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      ....+.++++  ++++ ++++.+..+.|..|++...
T Consensus       203 ~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             SSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCC
T ss_pred             CCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCC
Confidence            4455788888  4665 5556677899999998753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.04  E-value=1  Score=42.40  Aligned_cols=40  Identities=10%  Similarity=0.056  Sum_probs=26.0

Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeC
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSV  256 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~  256 (268)
                      +.+.++|. +|+.+..++-+.|. ...+.. ...+|++||+..
T Consensus       494 g~l~A~D~~tG~~lW~~~l~~g~-~~~P~~-y~~~G~qyv~~~  534 (599)
T 1w6s_A          494 GYLKARDSDTGDLLWKFKIPSGA-IGYPMT-YTHKGTQYVAIY  534 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCCEE-EEETTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEeeCCCCc-EeccEE-EEeCCEEEEEEE
Confidence            56778887 59998888776542 232222 247889888654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.01  E-value=0.93  Score=43.06  Aligned_cols=156  Identities=11%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             ceEEECCCCCEEEEEeCC-------------CeEEEEeCCCCe---EEE------------EEEcCCCCCeeEEEeecC-
Q 024436           37 ESLAFDALGEGPYTGVSD-------------GRIIKWHQDQRR---WLH------------FARTSPNRNHISVILSGD-   87 (268)
Q Consensus        37 ~gia~~~dG~~l~~~~~~-------------g~I~~~~~~g~~---~~~------------~~~~~~~~~~~~~~~~~~-   87 (268)
                      .+++++ ||+.++....+             .+|++++.....   ...            ....++++.++....... 
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            456888 88866554433             357777643210   111            112345555543332222 


Q ss_pred             CcceEEEEeCCCC--eEEEeecCCCCcceEEEccCCCEEEEEecC---CcEEEEEEccCCCCCceeEEEeCCCCCCceEE
Q 024436           88 KTGRLMKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  162 (268)
Q Consensus        88 ~~g~v~~~d~~~~--~~~~~~~~~~~pnGia~spdg~~lyva~~~---~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~  162 (268)
                      ....||.+|.+++  +.+.+......-... ++++|+.||+....   +.+|++++++++.....+.+..  ..++-+.+
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVLTV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCEEE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEEEE
Confidence            3358999997654  556665443322222 67888888876432   4699999998643322344332  22233366


Q ss_pred             cCCCC-EEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          163 SPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       163 d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      +++|+ |+++.......   -|..++..++....++.+
T Consensus       334 s~~g~~lv~~~~~~g~~---~l~~~d~~g~~~~~l~~p  368 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATA---RVEQFDYEGKRVREVALP  368 (693)
T ss_dssp             EEETTEEEEEEEETTEE---EEEEECTTSCEEEEECCS
T ss_pred             EEECCEEEEEEEECCee---EEEEEECCCCeeEEeecC
Confidence            67776 44444333211   144455556665655544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.78  E-value=0.93  Score=39.93  Aligned_cols=209  Identities=14%  Similarity=0.098  Sum_probs=105.6

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCee-----EEEeecCCcceEEEEeCCCCeEEEeec-CCCCc
Q 024436           40 AFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHI-----SVILSGDKTGRLMKYDPATKQVTVLLG-NLSFP  112 (268)
Q Consensus        40 a~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~-----~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p  112 (268)
                      ++.++|+.++++..+|.|..|+.. ++....+... ...-+.     ..+..+..++.|..+|.++++...... .-...
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v  202 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV  202 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC-CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE
Confidence            566789999999999999999875 3322222100 000000     012244567888999988776544433 33445


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccce
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGN  191 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~  191 (268)
                      +.++++  ++.+ ++.+..+.|..|++..+..  ...+..-.+....+++  +|+++++....+.     |..+. ..++
T Consensus       203 ~~~~~~--~~~l-~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-----i~iwd~~~~~  270 (445)
T 2ovr_B          203 RCMHLH--EKRV-VSGSRDATLRVWDIETGQC--LHVLMGHVAAVRCVQY--DGRRVVSGAYDFM-----VKVWDPETET  270 (445)
T ss_dssp             EEEEEE--TTEE-EEEETTSEEEEEESSSCCE--EEEEECCSSCEEEEEE--CSSCEEEEETTSC-----EEEEEGGGTE
T ss_pred             EEEEec--CCEE-EEEeCCCEEEEEECCCCcE--EEEEcCCcccEEEEEE--CCCEEEEEcCCCE-----EEEEECCCCc
Confidence            677775  4445 4556779999999875321  1222211223345555  5654444444432     33332 3455


Q ss_pred             eeeeccccceeeeeeccc------cCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEE
Q 024436          192 VLIKLPIDIVKIHSSLVK------LSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLY  264 (268)
Q Consensus       192 ~l~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~  264 (268)
                      .+..+......+.++...      .... +.+...+. +++.+..+....    ..+..+...++.|+.++ .+..|.+.
T Consensus       271 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~-~dg~i~vw  344 (445)
T 2ovr_B          271 CLHTLQGHTNRVYSLQFDGIHVVSGSLD-TSIRVWDVETGNCIHTLTGHQ----SLTSGMELKDNILVSGN-ADSTVKIW  344 (445)
T ss_dssp             EEEEECCCSSCEEEEEECSSEEEEEETT-SCEEEEETTTCCEEEEECCCC----SCEEEEEEETTEEEEEE-TTSCEEEE
T ss_pred             EeEEecCCCCceEEEEECCCEEEEEeCC-CeEEEEECCCCCEEEEEcCCc----ccEEEEEEeCCEEEEEe-CCCeEEEE
Confidence            555544322222222100      0011 22333333 355555554332    22334444555555554 55677777


Q ss_pred             eCC
Q 024436          265 NYS  267 (268)
Q Consensus       265 ~~~  267 (268)
                      +++
T Consensus       345 d~~  347 (445)
T 2ovr_B          345 DIK  347 (445)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.75  E-value=0.84  Score=39.83  Aligned_cols=102  Identities=11%  Similarity=-0.072  Sum_probs=59.7

Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE---cCCCCC------e-----------eEEEeecCCcceEEEEeCCC-
Q 024436           41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR---TSPNRN------H-----------ISVILSGDKTGRLMKYDPAT-   99 (268)
Q Consensus        41 ~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---~~~~~~------~-----------~~~~~~~~~~g~v~~~d~~~-   99 (268)
                      +.+++.++.++..|+.|..|+.+.........   ..+...      |           ...+.+...++.|..+|..+ 
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            34456667788889988888765432111111   111111      0           01122333445555555433 


Q ss_pred             CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          100 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       100 ~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      +....+...-.....++|+|++..++++....+.|..|++..+
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            3444555555566899999998767777788899999998743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.54  E-value=0.7  Score=44.54  Aligned_cols=82  Identities=9%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             ceEEEEeCCCC-eEEEeecCCC-CcceEEEccCCCEEEEEecCC----cEEEEEEccCCCCCceeEEEe-CCCCCCceEE
Q 024436           90 GRLMKYDPATK-QVTVLLGNLS-FPNGVALSEDGNYILLAETTS----CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR  162 (268)
Q Consensus        90 g~v~~~d~~~~-~~~~~~~~~~-~pnGia~spdg~~lyva~~~~----~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~  162 (268)
                      ..|+.+|.+++ +.  +.+.+. ...+++|+|||+.||++....    .+|+++++.++......++.. -...--++.+
T Consensus       201 ~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  278 (751)
T 2xe4_A          201 YTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK  278 (751)
T ss_dssp             EEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred             EEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence            46999999877 52  111111 135799999998888775432    479999987543222233322 1122235678


Q ss_pred             cCCCC-EEEEEe
Q 024436          163 SPRGG-FWVGIH  173 (268)
Q Consensus       163 d~dG~-l~va~~  173 (268)
                      ++||+ |++..+
T Consensus       279 SpDg~~l~~~~~  290 (751)
T 2xe4_A          279 AADTNTLCIGSQ  290 (751)
T ss_dssp             CTTSSEEEEEEE
T ss_pred             CCCCCEEEEEec
Confidence            99997 444444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.49  E-value=1.2  Score=39.19  Aligned_cols=210  Identities=14%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCC-------CCCeeEEEeecCCcceEEEEeCCCCeEEE-e
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSP-------NRNHISVILSGDKTGRLMKYDPATKQVTV-L  105 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~-------~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~  105 (268)
                      ...+++++  +++++++..+|.|..|+.+... ...+.....       ..++   +..+..++.|..+|..+++... +
T Consensus       161 ~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          161 GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE---EEEEETTSEEEEEESSSCCEEEEE
T ss_pred             CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCE---EEEEeCCCEEEEEECCCCcEEEEE
Confidence            45566665  6788999999999999875432 222210000       0111   2334567888889887666543 3


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEecCCCcceee
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      .......+.+++  +++.++ +.+..+.|..|++..+     +....+.   +....+++  +|+.+++....+.     
T Consensus       236 ~~~~~~v~~~~~--~~~~l~-~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-----  300 (445)
T 2ovr_B          236 MGHVAAVRCVQY--DGRRVV-SGAYDFMVKVWDPETE-----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-----  300 (445)
T ss_dssp             ECCSSCEEEEEE--CSSCEE-EEETTSCEEEEEGGGT-----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-----
T ss_pred             cCCcccEEEEEE--CCCEEE-EEcCCCEEEEEECCCC-----cEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-----
Confidence            344445567777  666554 5556789999998742     2222222   22334555  5665555444432     


Q ss_pred             eEeeC-ccceeeeeccccceeeeeecc------ccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEe
Q 024436          183 VLSFP-WIGNVLIKLPIDIVKIHSSLV------KLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIG  254 (268)
Q Consensus       183 v~~~~-~~g~~l~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~  254 (268)
                      |..+. .+++.+..+......+.++..      ..... +.+...+. +++.+..+..+.+ ....++.+...+ +++++
T Consensus       301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~l~s  377 (445)
T 2ovr_B          301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD-STVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNK-NFVIT  377 (445)
T ss_dssp             EEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT-SCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECS-SEEEE
T ss_pred             EEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC-CeEEEEECCCCcEEEEEccCCC-CCCCEEEEEECC-CEEEE
Confidence            33332 345555444322111111100      00111 23444444 4666666654321 123344555544 44445


Q ss_pred             eCCCCeEEEEeCC
Q 024436          255 SVNMPYAGLYNYS  267 (268)
Q Consensus       255 s~~~~~v~~~~~~  267 (268)
                      +..+..|.+.+++
T Consensus       378 ~~~dg~v~iwd~~  390 (445)
T 2ovr_B          378 SSDDGTVKLWDLK  390 (445)
T ss_dssp             EETTSEEEEEETT
T ss_pred             EeCCCeEEEEECC
Confidence            5566778877765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.34  E-value=0.47  Score=41.52  Aligned_cols=123  Identities=13%  Similarity=0.038  Sum_probs=63.0

Q ss_pred             CcceEEEC-CCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436           35 GPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP  112 (268)
Q Consensus        35 ~P~gia~~-~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  112 (268)
                      .-..+++. +||+.+++...++.+..++..... ...+.               ...+.+..+... ...+... .....
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---------------~~~~~~~~~~~~-~~~~~~~-~~~~~  318 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---------------DSTMKLGPKNLL-PNVQGIS-LFPSL  318 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------------------CCS-CSEEEEC-SSCCS
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---------------eecCccccEEEc-ccccccc-ccCcc
Confidence            34456654 788888888888888888754321 11110               011122211111 1111111 22233


Q ss_pred             ceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          113 NGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       113 nGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .+..+.| .++.+.++.+..++|+.|+...+..  .............++++|||+++++....+
T Consensus       319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             SCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             eeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            3444554 3445666777789999999875432  222222223356899999999877665554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.62  E-value=0.42  Score=39.29  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=75.5

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-C--eE----EEEEE----------cCCCCCeeEEEeecC
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-R--RW----LHFAR----------TSPNRNHISVILSGD   87 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~--~~----~~~~~----------~~~~~~~~~~~~~~~   87 (268)
                      ...+..+++.+...+|++|+|.+|.+  .+|.++++++.. .  .|    +.+..          ..+++ .++..    
T Consensus        32 a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav----  104 (236)
T 1tl2_A           32 ATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV----  104 (236)
T ss_dssp             SEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE----
T ss_pred             ccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe----
Confidence            44566656778899999999996666  789999998743 1  11    11110          01111 12222    


Q ss_pred             CcceEEEEeCCC-Ce------EEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-CCC---CCceeEEEe-CC
Q 024436           88 KTGRLMKYDPAT-KQ------VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSK---AGTIEIVAQ-LP  154 (268)
Q Consensus        88 ~~g~v~~~d~~~-~~------~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-~~~---~g~~~~~~~-l~  154 (268)
                      .+|.|||+++-+ +.      -+.+-+ +-..-.-|.++|||. ||...  .+++++-..- +..   +.....+.+ .-
T Consensus       105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~  181 (236)
T 1tl2_A          105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW  181 (236)
T ss_dssp             ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG
T ss_pred             CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceeccCCc
Confidence            338888888732 11      112211 222236799999995 99887  5667663321 110   111122221 00


Q ss_pred             CCCCceEEcCCCCEEEEE
Q 024436          155 GFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~  172 (268)
                      ..=.=+.++++|+||.+.
T Consensus       182 ~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          182 DTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE
T ss_pred             ceEEEEEECCCCcEEEEe
Confidence            011125688888888877

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.42  E-value=0.4  Score=44.79  Aligned_cols=128  Identities=12%  Similarity=0.063  Sum_probs=78.1

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      +....||+|.  .|+|+-++|||+.+++.. .+.++..++-+.-               .+.+.+    .  .++++ ..
T Consensus       314 ~~~~~iP~pk--sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~---------------~~~~~~----k--~~~~~-~~  369 (638)
T 3sbq_A          314 KFTRYVPVPK--NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKL---------------PDLFAG----K--LADPR-DV  369 (638)
T ss_dssp             SSEEEEEESS--SCCCEEECTTSCEEEEECTTSSBEEEEEGGGH---------------HHHHTT----C--CSCGG-GG
T ss_pred             ceEEEEeCCC--CCcceeeCCCCCEEEEcCCCCCeEEEEEeehh---------------hhhhhc----c--ccCcc-cc
Confidence            4778899997  999999999999777643 2445543332210               000010    1  11333 22


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC---CCCc--eeEEEeC-----CC---CCCceEEcCCCCE
Q 024436          102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS---KAGT--IEIVAQL-----PG---FPDNIKRSPRGGF  168 (268)
Q Consensus       102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~---~~g~--~~~~~~l-----~g---~Pdgia~d~dG~l  168 (268)
                      +....+....|-..+|+++| ..|.+-.-...|.+|+++..   ..|+  ..++..+     ||   .+.|=..++||+.
T Consensus       370 ~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~  448 (638)
T 3sbq_A          370 IVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKW  448 (638)
T ss_dssp             EEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCE
T ss_pred             eEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccE
Confidence            22222334568899999999 79999999999999999731   0111  1222222     22   2445566899999


Q ss_pred             EEEEecC
Q 024436          169 WVGIHSR  175 (268)
Q Consensus       169 ~va~~~~  175 (268)
                      +++....
T Consensus       449 lv~lnK~  455 (638)
T 3sbq_A          449 LVALSKF  455 (638)
T ss_dssp             EEEEESC
T ss_pred             EEEeccc
Confidence            9988754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.31  E-value=2.5  Score=37.03  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=78.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcC-------CCCCeeEEEeecCCcceEEEEeCCCCeE----
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTS-------PNRNHISVILSGDKTGRLMKYDPATKQV----  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~-------~~~~~~~~~~~~~~~g~v~~~d~~~~~~----  102 (268)
                      ...++++  ++++++++..+|.|..++... +....+....       -...+   +..+..++.|..+|..+++.    
T Consensus       175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~s~dg~i~vwd~~~~~~~~~~  249 (435)
T 1p22_A          175 SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVWDMASPTDITLR  249 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTE---EEEEETTSCEEEEECSSSSCCEEE
T ss_pred             cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCE---EEEeeCCCcEEEEeCCCCCCceee
Confidence            3445554  888999999999999998753 3222221100       00111   22334567788888765542    


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceee
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~  182 (268)
                      ..+.......+.+++  +++.|+ +.+..+.|..|++..+..  ...+..-.+....+++  +++++++....+.     
T Consensus       250 ~~~~~~~~~v~~~~~--~~~~l~-s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-----  317 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF--DDKYIV-SASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNT-----  317 (435)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEE-EEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTSC-----
T ss_pred             eEecCCCCcEEEEEe--CCCEEE-EEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-----
Confidence            223333344566777  666665 445678999999875321  2222211122334445  4566555554442     


Q ss_pred             eEeeC-ccceeeeecc
Q 024436          183 VLSFP-WIGNVLIKLP  197 (268)
Q Consensus       183 v~~~~-~~g~~l~~i~  197 (268)
                      |..+. .+++.+..+.
T Consensus       318 i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          318 IRLWDIECGACLRVLE  333 (435)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEe
Confidence            44443 4466555554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.29  E-value=4.4  Score=38.46  Aligned_cols=83  Identities=20%  Similarity=0.281  Sum_probs=51.8

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--CCCceEEcCCC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FPDNIKRSPRG  166 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--~Pdgia~d~dG  166 (268)
                      .|.|..+|+.||++.--.......++..+..+|+.+|+. +..+.++.||...++.  .-.+ .++.  .-.-+....+|
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~--lw~~-~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEK--LWEA-PTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE--EEEE-ECSSCCCSCCEEEEETT
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCce--eeee-eCCCCcccCCEEEEeCC
Confidence            388999999988764332222234677777788888887 6789999999875321  1112 2321  11224445788


Q ss_pred             CEEEEEecC
Q 024436          167 GFWVGIHSR  175 (268)
Q Consensus       167 ~l~va~~~~  175 (268)
                      +.|++...+
T Consensus       532 ~~~v~~~~G  540 (677)
T 1kb0_A          532 RQYVSVAVG  540 (677)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888876433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=92.33  E-value=0.35  Score=42.28  Aligned_cols=145  Identities=16%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEE-------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCC
Q 024436           40 AFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFAR-------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF  111 (268)
Q Consensus        40 a~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~-------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  111 (268)
                      .+..+|.+++++..++.|+.++. +|+..-.+..       .++--..-..++.+...+.|+.+|+++|+..-...   .
T Consensus        44 p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~---~  120 (369)
T 2hz6_A           44 PTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLS---S  120 (369)
T ss_dssp             C-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-------------
T ss_pred             ceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEec---C
Confidence            34567776776678899999987 4542111110       01100000112233346789999999887542221   1


Q ss_pred             cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC----CCCEEEEEecCCCcceeeeEee-
Q 024436          112 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP----RGGFWVGIHSRRKGISKLVLSF-  186 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~----dG~l~va~~~~~~~~~~~v~~~-  186 (268)
                      +....++|+++.||++. ..+.|+.|+.++++.--...+...    ...+++.    ++.+|++...+.      +..+ 
T Consensus       121 ~~~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~------v~a~d  189 (369)
T 2hz6_A          121 AFADSLSPSTSLLYLGR-TEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGL------VVTVD  189 (369)
T ss_dssp             ------------EEEEE-EEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCE------EEEEC
T ss_pred             CCcccccccCCEEEEEe-cCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCE------EEEEE
Confidence            22355677888888764 457899998865432111111111    1223333    367888766543      4344 


Q ss_pred             Cccceeeeeccc
Q 024436          187 PWIGNVLIKLPI  198 (268)
Q Consensus       187 ~~~g~~l~~i~~  198 (268)
                      ..+|+.+.+...
T Consensus       190 ~~tG~~~W~~~~  201 (369)
T 2hz6_A          190 SESGDVLWIQNY  201 (369)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCCcEEEEecC
Confidence            457877765543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.17  E-value=7.3  Score=36.11  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCC--ceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD--NIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd--gia~d~d  165 (268)
                      ..|.|+.+|+.+|++.--........+..+...+..+|+. +..+.|+.+|.++++.  .-.+ .++....  -+....+
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a~D~~tG~~--lw~~-~~~~~~~~~p~~~~~~  517 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKALDNKDGKE--LWNF-KMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEEEETTTCCE--EEEE-ECSSCCCSCCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEEEECCCCCE--EEEE-eCCCCcEeeeEEEEEC
Confidence            4589999999988754322221223344444445578885 5678999999875321  1111 2322122  2333368


Q ss_pred             CCEEEEEecCC
Q 024436          166 GGFWVGIHSRR  176 (268)
Q Consensus       166 G~l~va~~~~~  176 (268)
                      |++|++...+.
T Consensus       518 G~~yv~~~~G~  528 (571)
T 2ad6_A          518 GKQYIGSMYGV  528 (571)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEECCC
Confidence            99999887654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.69  E-value=3.9  Score=36.15  Aligned_cols=102  Identities=9%  Similarity=0.082  Sum_probs=64.4

Q ss_pred             EEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEc-------CCCCCeeEEEeecCCcceEEEEeC
Q 024436           26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFART-------SPNRNHISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~-------~~~~~~~~~~~~~~~~g~v~~~d~   97 (268)
                      ..++++.   +..+++  |++.++++ .++.|..++..... -......       .+..+.   +.....+|.|+.+|.
T Consensus        83 ~~~~lp~---V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl  153 (388)
T 1xip_A           83 WEKEIPD---VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDL  153 (388)
T ss_dssp             EEEECTT---EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEET
T ss_pred             EEeeCCC---eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEc
Confidence            4556663   999999  89989888 77899998864321 0111000       001111   222246789999999


Q ss_pred             CCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           98 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        98 ~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      +++....+..   ....++|+|+|  +++ -..++.+..|++++.
T Consensus       154 ~~~~~~~~~~---~Vs~v~WSpkG--~~v-g~~dg~i~~~~~~~~  192 (388)
T 1xip_A          154 RTKSTKQLAQ---NVTSFDVTNSQ--LAV-LLKDRSFQSFAWRNG  192 (388)
T ss_dssp             TTCCEEEEEE---SEEEEEECSSE--EEE-EETTSCEEEEEEETT
T ss_pred             cCCccccccC---CceEEEEcCCc--eEE-EEcCCcEEEEcCCCc
Confidence            8666654432   45689999999  333 345688888888753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.45  E-value=0.41  Score=39.34  Aligned_cols=84  Identities=8%  Similarity=0.017  Sum_probs=50.1

Q ss_pred             CcceEEEEeCCC-------CeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc--CCC--CCceeEEEeCC-
Q 024436           88 KTGRLMKYDPAT-------KQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSK--AGTIEIVAQLP-  154 (268)
Q Consensus        88 ~~g~v~~~d~~~-------~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~--~~~--~g~~~~~~~l~-  154 (268)
                      ..|.||++++.+       +.-+.+-. +...-..+.|+|+|. ||++ + +++|+|++.-  +..  ++....+.+-. 
T Consensus        58 ~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav-~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw  134 (236)
T 1tl2_A           58 LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV-S-KDKLYKASPPQSDTDNWIARATEVGSGGW  134 (236)
T ss_dssp             ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE-E-TTEEEEESCCCSTTCCHHHHSEEEECSSG
T ss_pred             eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe-C-CCEEEEeCCCcCCCCceeccccEeccCCC
Confidence            456788888755       22222211 222245799999995 9988 3 3899998762  211  12223332210 


Q ss_pred             CCCCceEEcCCCCEEEEEecC
Q 024436          155 GFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va~~~~  175 (268)
                      ..-+-|.++|+|.||... .+
T Consensus       135 ~~~~~lff~p~G~Lyav~-dg  154 (236)
T 1tl2_A          135 SGFKFLFFHPNGYLYAVH-GQ  154 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TT
T ss_pred             CceEEEEECCCceEEEEe-CC
Confidence            123678999999999988 44

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.47  E-value=4.1  Score=38.00  Aligned_cols=82  Identities=22%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             CcceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCC--CCceEEc
Q 024436           88 KTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGF--PDNIKRS  163 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~--Pdgia~d  163 (268)
                      ..|.|+.+|+.+|++.= ...+...-.+.... .|..+|+. +..+.++.||.++++    ..+. +++..  ..-+...
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g-~~dg~l~A~D~~tG~----~lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTG-TGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEE-CCCCcEEEEECCCCC----EEEEecCCCCcccCceEEE
Confidence            46899999999887642 12222211233333 34578875 467899999987532    2221 23321  2225666


Q ss_pred             CCCCEEEEEecC
Q 024436          164 PRGGFWVGIHSR  175 (268)
Q Consensus       164 ~dG~l~va~~~~  175 (268)
                      .+|+.||+...+
T Consensus       538 ~~G~qYv~~~~G  549 (582)
T 1flg_A          538 QDGEQYLGVTVG  549 (582)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEcc
Confidence            789999988765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=89.65  E-value=13  Score=34.70  Aligned_cols=49  Identities=10%  Similarity=0.022  Sum_probs=33.6

Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEE-EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISE-VEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~-~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      +.+..+|+ +|+++.......    +..++ ++..++.||+++. +.++..+|.++
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~-dg~l~A~D~~t  503 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTL-DGYLKARDSDT  503 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECT-TSEEEEEETTT
T ss_pred             CeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECC-CCeEEEEECCC
Confidence            78999999 499988875421    22223 4557889999765 56777777654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.86  E-value=0.27  Score=42.96  Aligned_cols=22  Identities=9%  Similarity=0.099  Sum_probs=11.2

Q ss_pred             cCCCEEEEEecCCcEEEEEEccC
Q 024436          119 EDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       119 pdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+|+ +|++.+..+.|+.|+.++
T Consensus        47 ~~g~-~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A           47 VEEP-AFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             ---C-CEEECTTTCCEEEC----
T ss_pred             cCCC-EEEEeCCCCEEEEEECCC
Confidence            4554 667766778888888753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=88.71  E-value=17  Score=34.72  Aligned_cols=106  Identities=9%  Similarity=-0.013  Sum_probs=60.0

Q ss_pred             ceEEEC-CCCCEEE-EEeCCC----eEEEEeCCCC-e-----EEEE---EEcCCCCCeeEEEeecC-C-cceEEEEeCCC
Q 024436           37 ESLAFD-ALGEGPY-TGVSDG----RIIKWHQDQR-R-----WLHF---ARTSPNRNHISVILSGD-K-TGRLMKYDPAT   99 (268)
Q Consensus        37 ~gia~~-~dG~~l~-~~~~~g----~I~~~~~~g~-~-----~~~~---~~~~~~~~~~~~~~~~~-~-~g~v~~~d~~~   99 (268)
                      .+.+++ |||+.++ +...+|    +|+.++.++. .     +...   ..-++++..+.-..... . ...||+++.++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt  256 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK  256 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence            457899 9999654 433333    4888887654 2     1111   01134443222111111 1 24799998876


Q ss_pred             CeE--EEee--cCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCC
Q 024436          100 KQV--TVLL--GNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTS  142 (268)
Q Consensus       100 ~~~--~~~~--~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~  142 (268)
                      +..  +.+.  ..-.+-.++.+||||++|+++..  ....|+.++++++
T Consensus       257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            532  2232  22234457899999999887653  3468999998753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.41  E-value=12  Score=35.11  Aligned_cols=82  Identities=12%  Similarity=0.038  Sum_probs=48.5

Q ss_pred             EEEEeCCCCeEEEeecCCCCcceEEEcc-CCCEEEEEecC-----------CcEEEEEEccCCCCCceeEEEeC-CCCCC
Q 024436           92 LMKYDPATKQVTVLLGNLSFPNGVALSE-DGNYILLAETT-----------SCRILRYWLKTSKAGTIEIVAQL-PGFPD  158 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~~~~~pnGia~sp-dg~~lyva~~~-----------~~~I~~~~~~~~~~g~~~~~~~l-~g~Pd  158 (268)
                      +..+|+.+++.+.+..--..+...++.+ +| .||+....           ...+++|++....-........- ...-.
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~  246 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP  246 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCCSEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC
T ss_pred             cccCCCCCCeeeeeccCCCCceeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc
Confidence            4456777777776654434567889988 66 58887422           12688898875332112211110 11223


Q ss_pred             ceEEcCCCCEEEEEec
Q 024436          159 NIKRSPRGGFWVGIHS  174 (268)
Q Consensus       159 gia~d~dG~l~va~~~  174 (268)
                      +.++..+|+||+....
T Consensus       247 ~~~~~~~g~lyv~GG~  262 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGN  262 (656)
T ss_dssp             EEEECTTSCEEEECSS
T ss_pred             cccCCCCCCEEEeCCC
Confidence            5677789999997653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=85.11  E-value=5.3  Score=37.99  Aligned_cols=82  Identities=21%  Similarity=0.350  Sum_probs=51.0

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCC--CCCCceEEcCC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLP--GFPDNIKRSPR  165 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~--g~Pdgia~d~d  165 (268)
                      .|.|..+|+.||++.--.......++-.++..|..+|+. +.++.|+.||.++++    ..+. +++  ....-+....+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~----~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGE----KLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCc----cceeeeCCCCcccCceEEEEC
Confidence            388999999999764322211112344666667778776 578999999987532    2221 233  12223666678


Q ss_pred             CCEEEEEecC
Q 024436          166 GGFWVGIHSR  175 (268)
Q Consensus       166 G~l~va~~~~  175 (268)
                      |+.||+...+
T Consensus       529 G~qyv~~~~G  538 (689)
T 1yiq_A          529 GEQYVTFMAG  538 (689)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999987654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=82.14  E-value=20  Score=29.65  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             eEEECCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEee------cCCcce
Q 024436           38 SLAFDALGEGPYTGVS-----------DGRIIKWHQDQRRWLHFARTSPNR---------NHISVILS------GDKTGR   91 (268)
Q Consensus        38 gia~~~dG~~l~~~~~-----------~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~------~~~~g~   91 (268)
                      .-++..++++++.+-.           ...++++++....|.........|         ..+..+..      ......
T Consensus        39 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           39 VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCC
T ss_pred             eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccce
Confidence            3345567887776531           123778898877776654332222         11222211      122357


Q ss_pred             EEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEEecC------CcEEEEEEccC
Q 024436           92 LMKYDPATKQVTVLLGNLSFP---NGVALSEDGNYILLAETT------SCRILRYWLKT  141 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~~~~~p---nGia~spdg~~lyva~~~------~~~I~~~~~~~  141 (268)
                      ++++|+.+.+.+.+.. +..|   ...+. -++ .|||....      .+.+++|++..
T Consensus       119 ~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          119 VMCYDRLSFKWGESDP-LPYVVYGHTVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             EEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             EEEECCCCCcEeECCC-CCCcccceeEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCC
Confidence            9999999888877653 2222   23333 355 58887643      24789999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	9e-27
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	8e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.003
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.004
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-04
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	0.001
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.002
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.004

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  104 bits (260), Expect = 9e-27
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 69  HFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE 128
           H+      ++    +  G     +  Y P    V V+     F NG+ +S DG Y+ +AE
Sbjct: 169 HYFIDPYLKSWEMHL--GLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAE 224

Query: 129 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRRKGISKLVLSFP 187
             + +I  Y    +   T   V       DNI   P     WVG H     I       P
Sbjct: 225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 284

Query: 188 WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK 247
                      ++++I   L             SE+  V  +  E G  + +  +     
Sbjct: 285 P--------GSEVLRIQDIL-------------SEEPKVTVVYAENGTVL-QGSTVAAVY 322

Query: 248 DGNLWIGSVNMPY 260
            G L IG+V    
Sbjct: 323 KGKLLIGTVFHKA 335

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 17/124 (13%)

Query: 60  WHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLL-----GNLSFPNG 114
           + ++   ++             V ++G   G +++ D  T + TV+      G    P G
Sbjct: 25  FDKNGDFYIVA---------PEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAG 75

Query: 115 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF--PDNIKRSPRGGFWVGI 172
                D N + +A+     +L      +     +  ++       ++      G  W+  
Sbjct: 76  CQCDRDANQLFVADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134

Query: 173 HSRR 176
            +  
Sbjct: 135 PAGE 138

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 8/191 (4%)

Query: 82  VILSGDKTGRLMKYDPATKQV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 139
            ++  +    L   D A+  V  + ++ +   P    ++ D     +       I    L
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 140 KTSK----AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIK 195
            T K    A    +  ++     +   SP G       +  + +            + + 
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL--NDHYVVKPPRLEVF 127

Query: 196 LPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGS 255
              D ++               MR ++ G++     +I +   ++           W   
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK 187

Query: 256 VNMPYAGLYNY 266
                  LY +
Sbjct: 188 GYSAPDVLYFW 198

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 96  DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG 155
           + A  ++       +F   +A + DG  I +       I+      +  G  +I A + G
Sbjct: 14  ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSI----TPDGNQQIHATVEG 68

Query: 156 FPDNIKRSPRGGFWVGIHSRRK 177
               +  +  G       +   
Sbjct: 69  KVSGLAFTSNGDLVATGWNADS 90

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 19/171 (11%), Positives = 42/171 (24%), Gaps = 23/171 (13%)

Query: 21  STQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHI 80
           +  G  Q           LAF + G+   TG +   I      +         +      
Sbjct: 55  TPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF 114

Query: 81  SVILSGDKTGRLMKYDPATK---------------------QVTVLLGNLSFPNGVALSE 119
              ++     + +  D                           +         NG+    
Sbjct: 115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK--R 172

Query: 120 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170
            GN++ ++ T    +LR  + ++       +       D+      G  + 
Sbjct: 173 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 15/186 (8%)

Query: 81  SVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140
           ++ ++  + G ++   P      +        +G+A + +G+  +     +  I    L 
Sbjct: 40  TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDL-VATGWNADSIPVVSLV 97

Query: 141 TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI 200
            S      ++        N         ++   S R  I  + +  P     L    +  
Sbjct: 98  KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157

Query: 201 VKIHSSLVKLSG----NGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE---------K 247
               S     +G       + +  +E+  +L I  +   K       VE+          
Sbjct: 158 SNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV 217

Query: 248 DGNLWI 253
           +GNL+ 
Sbjct: 218 EGNLYG 223

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 38  SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHIS---------VILSGDK 88
           ++ F   G    TG  D     +     + L           I+         ++L+G  
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 89  TGRLMKYDPAT-KQVTVLLGNLSFPNGVALSEDGNYIL 125
                 +D     +  VL G+ +  + + +++DG  + 
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 87  DKTGRLMKYDPATKQVTVLLGNLSF----PNGVALSEDGNYILLAETTSCRILRY 137
           ++ G +  ++  T   TVL+              +S D  Y L +      I ++
Sbjct: 34  EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFS-YNVEPIYQH 87

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 88  KTGRLMKYDPATKQVTVLLGNLSF------PNGVALSEDGNYILLAETTSCRILR----- 136
           +   ++ ++      +V L N +F       N  ++S DG +ILL      +  R     
Sbjct: 34  QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE-YNYVKQWRHSYTA 92

Query: 137 -YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL 182
            Y +       +    ++P     +  SP G     + +    +   
Sbjct: 93  SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIE 139

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 60  WHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL-LGNLSFPNGVALS 118
                   +            +V ++   T +++K    +   TVL    L+ P  VA+ 
Sbjct: 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD 232

Query: 119 EDGNYILLAETTSCRILRY 137
            D   + +A+  + R+++ 
Sbjct: 233 SDRT-VYVADRGNDRVVKL 250

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 85  SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141
           +  ++  +   D  + +VT  +   S P G  +S DG  + +A   S  +      T
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 85  SGDKTGRLMKYDPATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 143
              +   +   +      +T ++        + +S D  Y+ +      R+L Y +    
Sbjct: 11  PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 70

Query: 144 -AGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 173
            A T    + LPG   +I    +G F     
Sbjct: 71  GALTFAAESALPGSLTHISTDHQGQFVFVGS 101

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 35  GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR-------NHISVILSGD 87
           G E+      G    +G  D  I  W       L       N        +    ILS  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 88  KTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYIL 125
               L  +D   K+ +  L  +  F   +   +   Y++
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.85
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.81
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.57
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.42
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.4
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.27
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.18
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.15
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.1
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.04
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.98
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.59
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.58
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.46
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.46
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.4
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.38
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.38
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.29
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.17
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.11
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.1
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.07
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.02
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.72
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.71
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.56
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.46
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.42
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.33
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.57
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.12
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.15
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.07
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.05
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.33
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	91.51
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.11
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	90.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.69
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	88.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	84.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.57

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.85  E-value=4.5e-20  Score=160.21  Aligned_cols=142  Identities=16%  Similarity=0.187  Sum_probs=107.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC-------C-------CC-CeeEEEe-----------ecCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-------P-------NR-NHISVIL-----------SGDK   88 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~-------~-------~~-~~~~~~~-----------~~~~   88 (268)
                      .|.|++++++|+.+|+....++|.+++++|..........       +       ++ -|+.+..           ....
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            5999999999998888877888999999987422211110       1       11 1333211           1234


Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCC----EEEEEecCCcEEEEEEccC-CCCCceeEEEeCC----CCCCc
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN----YILLAETTSCRILRYWLKT-SKAGTIEIVAQLP----GFPDN  159 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~----~lyva~~~~~~I~~~~~~~-~~~g~~~~~~~l~----g~Pdg  159 (268)
                      .|+||+++++ ++...+..++..||||+|+||++    +|||+++.+++|++|+++. +.+...+++..++    +.|||
T Consensus       152 ~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            6899999998 77888888899999999999876    7999999999999999873 3444555666543    46999


Q ss_pred             eEEcCCCCEEEEEecCCC
Q 024436          160 IKRSPRGGFWVGIHSRRK  177 (268)
Q Consensus       160 ia~d~dG~l~va~~~~~~  177 (268)
                      |++|++|+|||+.+..+.
T Consensus       231 iavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEEBTTCCEEEEEETTTE
T ss_pred             eEEecCCcEEEEEcCCCE
Confidence            999999999999998763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.85  E-value=5.8e-20  Score=159.69  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=127.3

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEEcC------------C-CCCeeEEEe
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVS----DGRIIKWHQDQRRWLHFARTS------------P-NRNHISVIL   84 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~----~g~I~~~~~~g~~~~~~~~~~------------~-~~~~~~~~~   84 (268)
                      .+.+..+..+....|.|+++++||++|++...    .+.|.+++.++..+.......            + ++-|+.+..
T Consensus        70 g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~  149 (319)
T d2dg1a1          70 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  149 (319)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccc
Confidence            34445554554568999999999998887653    567888887765433332211            1 111343321


Q ss_pred             --ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCce---eEEEeC--CCC
Q 024436           85 --SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTI---EIVAQL--PGF  156 (268)
Q Consensus        85 --~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~---~~~~~l--~g~  156 (268)
                        .....+.+++++++++.++.+..++..||||+|+|||+.|||+++.+++|++|+++.. .....   ......  .+.
T Consensus       150 ~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~  229 (319)
T d2dg1a1         150 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG  229 (319)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             cccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccc
Confidence              1234678999999966788888889999999999999999999999999999998742 21111   111122  246


Q ss_pred             CCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccce
Q 024436          157 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV  201 (268)
Q Consensus       157 Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~  201 (268)
                      ||||++|++|+|||+++.+++     |.++.++|+++.+|++|..
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~-----V~~~~p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGR-----VLVFNKRGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTE-----EEEECTTSCEEEEEECTTG
T ss_pred             eeeeeEcCCCCEEEEEcCCCE-----EEEECCCCcEEEEEeCCCc
Confidence            999999999999999999885     8899999999999988854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.84  E-value=1.1e-20  Score=165.92  Aligned_cols=196  Identities=21%  Similarity=0.208  Sum_probs=139.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      .+.++..+.+..|+.+++..+|.+|++......    .+-..              ..+.+...+++.++++|++  +.+
T Consensus       140 ~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~----~~~~~--------------~~e~~~~~~~g~v~~~~~~--~~~  199 (340)
T d1v04a_         140 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI----DPYLK--------------SWEMHLGLAWSFVTYYSPN--DVR  199 (340)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCC----SHHHH--------------HHHHHTTCCCEEEEEECSS--CEE
T ss_pred             EEeecCCccccCccceEEecCCCEEEecCccCc----Chhhh--------------hhhHhhcCCceeEEEEcCC--ceE
Confidence            556666677788999999999987766421100    00000              0111234577899999875  677


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC-CCCEEEEEecCCCcceee
Q 024436          104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGFWVGIHSRRKGISKL  182 (268)
Q Consensus       104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~-dG~l~va~~~~~~~~~~~  182 (268)
                      .+.+++.+||||+++||+++|||+++..++|++|++++........+..+++.||||.+|+ +|.+|++.+....++.. 
T Consensus       200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~-  278 (340)
T d1v04a_         200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFF-  278 (340)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHS-
T ss_pred             EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCcccchhh-
Confidence            8889999999999999999999999999999999998643333344456889999999996 68999999875422110 


Q ss_pred             eEeeCccceeeeeccccceeeeeeccccCCCcEEEEEE----CCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCC
Q 024436          183 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI----SEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNM  258 (268)
Q Consensus       183 v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~  258 (268)
                         +.+      ..             ..+  ..++++    ..++++.++|++ +|+.++.+|+|+.++++||+||+++
T Consensus       279 ---~~~------~~-------------~~~--s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~  333 (340)
T d1v04a_         279 ---YDA------EN-------------PPG--SEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFH  333 (340)
T ss_dssp             ---CCT------TS-------------CCC--EEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEESSS
T ss_pred             ---hcc------cC-------------CCC--ceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEeeeC
Confidence               000      00             011  223333    235888889988 4788999999999999999999999


Q ss_pred             CeEEEEeC
Q 024436          259 PYAGLYNY  266 (268)
Q Consensus       259 ~~v~~~~~  266 (268)
                      +.| +|++
T Consensus       334 ~~l-~C~~  340 (340)
T d1v04a_         334 KAL-YCDL  340 (340)
T ss_dssp             CEE-EEEC
T ss_pred             Cce-EecC
Confidence            988 7875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.81  E-value=2.7e-18  Score=147.58  Aligned_cols=175  Identities=15%  Similarity=0.147  Sum_probs=131.1

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC--------------CC-eeEEEee-
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN--------------RN-HISVILS-   85 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~--------------~~-~~~~~~~-   85 (268)
                      +.....+.++.  .|.+++..++|+++++ .. ..+.++++++..++.++....+              +. |+..... 
T Consensus        49 ~g~~~~~~~~~--~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~  124 (295)
T d2ghsa1          49 SGRKTVHALPF--MGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK  124 (295)
T ss_dssp             TTEEEEEECSS--CEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT
T ss_pred             CCeEEEEECCC--CcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc
Confidence            34566677776  7899999999997665 33 5788999875545555432211              11 3333321 


Q ss_pred             -cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC---CCCceeEEEeC---CCCCC
Q 024436           86 -GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS---KAGTIEIVAQL---PGFPD  158 (268)
Q Consensus        86 -~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~---~~g~~~~~~~l---~g~Pd  158 (268)
                       ....+.+++++.  ++++.+..++..|||+++++|++.+|++++..++|++|+++..   ..+....+.+.   .+.||
T Consensus       125 ~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd  202 (295)
T d2ghsa1         125 AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD  202 (295)
T ss_dssp             CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE
T ss_pred             ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccccccc
Confidence             124567888864  6788888889999999999999999999999999999998742   22445555553   46799


Q ss_pred             ceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeec
Q 024436          159 NIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSL  207 (268)
Q Consensus       159 gia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~  207 (268)
                      |+++|++|+||+|.+.+++     |.+|.++|+++.++++|..++++|+
T Consensus       203 G~~vD~~GnlWva~~~~g~-----V~~~dp~G~~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         203 GSVCDAEGHIWNARWGEGA-----VDRYDTDGNHIARYEVPGKQTTCPA  246 (295)
T ss_dssp             EEEECTTSCEEEEEETTTE-----EEEECTTCCEEEEEECSCSBEEEEE
T ss_pred             ceEEcCCCCEEeeeeCCCc-----eEEecCCCcEeeEecCCCCceEEEE
Confidence            9999999999999999875     8889999999999999877776553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=4.7e-16  Score=131.85  Aligned_cols=222  Identities=15%  Similarity=0.206  Sum_probs=152.3

Q ss_pred             CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-C----Ce---------eEEEeecCCcceEEEEeC
Q 024436           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-R----NH---------ISVILSGDKTGRLMKYDP   97 (268)
Q Consensus        32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~----~~---------~~~~~~~~~~g~v~~~d~   97 (268)
                      .++.|.|||++++|++|+++..+++|.+++++|+....+...... .    +.         ...+.....+++|.++++
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            467899999999999999988999999999999865555332111 0    00         111123345567888888


Q ss_pred             CCCeEEE-e-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEe
Q 024436           98 ATKQVTV-L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus        98 ~~~~~~~-~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~  173 (268)
                      + ++... . ...+..|++++++++|+ +|+++...+++.+++.++..   ...+...  ...|.++++|++|++|++++
T Consensus       101 ~-g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         101 Y-GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             T-SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             c-ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce---eecccccccccccceeeeccceeEEeeec
Confidence            7 54433 3 24577899999999996 99999999999999987632   2333221  24689999999999999999


Q ss_pred             cCCCcceeeeEeeCccceeeeecccc--ceeee-eec--------cccCCCcEEEEEECCCCCEEEEEEcCCCCceeceE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPID--IVKIH-SSL--------VKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSIS  242 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~--~~~~~-~~~--------~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s  242 (268)
                      ..+.     |.+|..+|+.+..+..+  ...+. .++        ...... ..+..++++|+.+.++..+..  ...+.
T Consensus       176 ~~~~-----V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~-~~v~~f~~~G~~~~~~~~~~~--~~~p~  247 (279)
T d1q7fa_         176 RAHC-----VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-FNLTIFTQDGQLISALESKVK--HAQCF  247 (279)
T ss_dssp             GGTE-----EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-CEEEEECTTSCEEEEEEESSC--CSCEE
T ss_pred             cccc-----eeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC-cEEEEECCCCCEEEEEeCCCC--CCCEe
Confidence            8874     88888899988777532  11111 111        111111 346677888888777765321  23455


Q ss_pred             EE-EEeCCEEEEeeCCCCeEEEEeCC
Q 024436          243 EV-EEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       243 ~~-~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      .+ +..+|+|||++ .+++|.+++..
T Consensus       248 ~vav~~dG~l~V~~-~n~~v~~fr~~  272 (279)
T d1q7fa_         248 DVALMDDGSVVLAS-KDYRLYIYRYV  272 (279)
T ss_dssp             EEEEETTTEEEEEE-TTTEEEEEECS
T ss_pred             EEEEeCCCcEEEEe-CCCeEEEEEee
Confidence            54 45689999999 57999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.74  E-value=3.8e-16  Score=133.84  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=108.1

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCC----------------
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRN----------------   78 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~----------------   78 (268)
                      -+..++.+.  -||++|++|||++|+++..+++|++++++|+. ..+...         .+++.                
T Consensus        20 v~~~~p~~~--~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          20 IITSFPVNT--FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEECTTC--CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCC--CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            345566654  69999999999999999999999999999873 222211         11110                


Q ss_pred             -----------------eeE---------EEeecCCcceEEEEeCCCCeEEEee-----------cCCCCcceEEEccCC
Q 024436           79 -----------------HIS---------VILSGDKTGRLMKYDPATKQVTVLL-----------GNLSFPNGVALSEDG  121 (268)
Q Consensus        79 -----------------~~~---------~~~~~~~~g~v~~~d~~~~~~~~~~-----------~~~~~pnGia~spdg  121 (268)
                                       +..         .+......+.+++++++++......           .....+|||.++  +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~  174 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--G  174 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--C
Confidence                             001         1223345677888888766544321           234568898876  4


Q ss_pred             CEEEEEecCCcEEEEEEccCC-CCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCcccee
Q 024436          122 NYILLAETTSCRILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNV  192 (268)
Q Consensus       122 ~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~  192 (268)
                      +.+|++++.+++|++++.++. .......+... +.||||++|+||+||++.+..+.     |.++.++|+.
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~pdgia~d~dG~l~va~~~~~~-----V~~i~p~G~~  240 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNS-----VVRIAPDRST  240 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCC-----EEEECTTCCE
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCC-CCCcceEECCCCCEEEEEcCCCc-----EEEECCCCCE
Confidence            589999999999999999853 23334444444 46999999999999999987763     5555555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=3.4e-15  Score=125.17  Aligned_cols=229  Identities=13%  Similarity=0.167  Sum_probs=133.4

Q ss_pred             EEEecCCC---CCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcCCCCCeeE-------EEeecCCcceEEE
Q 024436           26 VQYQIEGA---IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRNHIS-------VILSGDKTGRLMK   94 (268)
Q Consensus        26 ~~i~~~~~---~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~g~v~~   94 (268)
                      .++|+.++   .+|++||+++||++|+++.. .++|.++++++.....+.......+...       .+.++...+.+..
T Consensus         3 ~~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~   82 (260)
T d1rwia_           3 TVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL   82 (260)
T ss_dssp             EECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred             eEEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeee
Confidence            34566654   48999999999998888764 5889998877653222211100111100       1223333334433


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEe
Q 024436           95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus        95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~  173 (268)
                      ++..+++......++..|+||+++++|+ ||+++..++++.+++..+..   ...+. ..-..|.+|++|++|++|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          83 AAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             CTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSS---CEECCCCSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeeccceeeeeeeeeeecccccccccce-eEeeccccccccccccccce---eeeeeecccCCcceeeecCCCCEeeecc
Confidence            3333233332345678899999999996 99999999999999876532   12221 1113699999999999999998


Q ss_pred             cCCCcceeeeEeeCccceeeeecccc-ceeee-eeccc-------cCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEE
Q 024436          174 SRRKGISKLVLSFPWIGNVLIKLPID-IVKIH-SSLVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEV  244 (268)
Q Consensus       174 ~~~~~~~~~v~~~~~~g~~l~~i~~~-~~~~~-~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~  244 (268)
                      ....     +.++...+.....+... ...+. .++.+       .... ..++++++++.....+..   ..+..++.+
T Consensus       159 ~~~~-----i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~-~~i~~~~~~~~~~~~~~~---~~~~~P~~i  229 (260)
T d1rwia_         159 DNNR-----VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT-NQVVKLLAGSTTSTVLPF---TGLNTPLAV  229 (260)
T ss_dssp             GGTE-----EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT-TEEEEECTTCSCCEECCC---CSCCCEEEE
T ss_pred             cccc-----ccccccccceeeeeeccccCCCccceeeeeeeeeeeecCC-CEEEEEeCCCCeEEEEcc---CCCCCeEEE
Confidence            8763     66666666544443321 11111 11110       0001 234445544443333321   124556666


Q ss_pred             EEe-CCEEEEeeCCCCeEEEEeCC
Q 024436          245 EEK-DGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       245 ~~~-~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +.. +|+|||++..+++|.+|++.
T Consensus       230 ~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEeCCCCEEEEECCCCEEEEEeCC
Confidence            554 68999999999999999764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.63  E-value=1.4e-14  Score=125.18  Aligned_cols=138  Identities=12%  Similarity=0.174  Sum_probs=96.6

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCC-eeEEEeecCCcceEEEEeCCCCeE
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRN-HISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~-~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ...||++++++|++|+++..+++|+|++++++....+....          +++. |+.........+.++.++++++.+
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            35699999999999999999999999999887433332211          1222 221111112356788888886666


Q ss_pred             EEeec---CCCCcceEEEccCCCEEEEEecCC------cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEEE
Q 024436          103 TVLLG---NLSFPNGVALSEDGNYILLAETTS------CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVG  171 (268)
Q Consensus       103 ~~~~~---~~~~pnGia~spdg~~lyva~~~~------~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~va  171 (268)
                      .....   ....||+++++++|+ ||+++...      +.+++++.++..   .+.+.. + ..|+||++++||+ ||++
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~-~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNI-SVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEE-SSEEEEEECTTSSEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeecc-ceeeeeeeccccceEEEe
Confidence            55543   356799999999996 99998653      468888887632   333333 4 3699999999996 9999


Q ss_pred             EecCC
Q 024436          172 IHSRR  176 (268)
Q Consensus       172 ~~~~~  176 (268)
                      +...+
T Consensus       195 d~~~~  199 (319)
T d2dg1a1         195 ETTAN  199 (319)
T ss_dssp             EGGGT
T ss_pred             cccCC
Confidence            98776

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.62  E-value=3.9e-14  Score=122.20  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=94.6

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeC-------CCeEEEEeCCCCeEEEEEEc--------------CCCCCeeEEE
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS-------DGRIIKWHQDQRRWLHFART--------------SPNRNHISVI   83 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~-------~g~I~~~~~~g~~~~~~~~~--------------~~~~~~~~~~   83 (268)
                      ...+.-+ +.+|||+++++||++|+++..       +|+|+|+++++.....+...              .++++.+  +
T Consensus        10 ~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l--~   86 (314)
T d1pjxa_          10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL--F   86 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE--E
T ss_pred             eEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEE--E
Confidence            3444444 789999999999998887542       57899999987654433211              1111111  1


Q ss_pred             eecCCcceEEEEeCCCCeEEEeec-----CCCCcceEEEccCCCEEEEEecC---------------CcEEEEEEccCCC
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLLG-----NLSFPNGVALSEDGNYILLAETT---------------SCRILRYWLKTSK  143 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~pnGia~spdg~~lyva~~~---------------~~~I~~~~~~~~~  143 (268)
                      .+ .....+++++++++..+.+..     .+..||++++++||+ |||++..               .++|++++.++. 
T Consensus        87 va-d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-  163 (314)
T d1pjxa_          87 VA-DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-  163 (314)
T ss_dssp             EE-ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-
T ss_pred             EE-ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCc-
Confidence            12 234568999998554443321     245799999999996 9999854               358999988752 


Q ss_pred             CCceeEEE-eCCCCCCceEEcCCCC-----EEEEEecCC
Q 024436          144 AGTIEIVA-QLPGFPDNIKRSPRGG-----FWVGIHSRR  176 (268)
Q Consensus       144 ~g~~~~~~-~l~g~Pdgia~d~dG~-----l~va~~~~~  176 (268)
                         ...+. .+. .|+||++++++.     ||+++...+
T Consensus       164 ---~~~~~~~~~-~pNGi~~~~d~d~~~~~lyv~d~~~~  198 (314)
T d1pjxa_         164 ---MIQVDTAFQ-FPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             ---EEEEEEEES-SEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             ---eeEeeCCcc-eeeeeEECCCCCcceeEEEEEeeccc
Confidence               23332 243 699999988764     999988776

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=4.4e-14  Score=118.25  Aligned_cols=156  Identities=16%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCe-------eEEEeecCCcceEEEEe
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNH-------ISVILSGDKTGRLMKYD   96 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~g~v~~~d   96 (268)
                      ....+....+..|.+++++++|++++++..++++.+++.++.....+....-..+.       ...++.....++|++++
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  167 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccc
Confidence            33445555678899999999999888888889999998877542222111000000       01123445667899999


Q ss_pred             CCCCeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEEEec
Q 024436           97 PATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHS  174 (268)
Q Consensus        97 ~~~~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va~~~  174 (268)
                      +++.....+ ...+..|+||+++++|+ |||++..+++|++|+.++..   ...+..- -..|.+|++|++|+|||+++.
T Consensus       168 ~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         168 AESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            885444443 36788999999999996 99999999999999887532   2222211 136999999999999999998


Q ss_pred             CCCcceeeeEeeCc
Q 024436          175 RRKGISKLVLSFPW  188 (268)
Q Consensus       175 ~~~~~~~~v~~~~~  188 (268)
                      ++ +    |.+++.
T Consensus       244 ~~-r----I~~i~~  252 (260)
T d1rwia_         244 ND-R----VVKLTS  252 (260)
T ss_dssp             GT-E----EEEECC
T ss_pred             CC-E----EEEEeC
Confidence            87 3    555543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.50  E-value=4.7e-11  Score=98.96  Aligned_cols=230  Identities=11%  Similarity=0.115  Sum_probs=140.1

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCeE-EEEEE--------cCCCCCeeEEEeecCCcceE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRW-LHFAR--------TSPNRNHISVILSGDKTGRL   92 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~~-~~~~~--------~~~~~~~~~~~~~~~~~g~v   92 (268)
                      +-+.+++.+.  .|.+++++|||+.+|+ +..+++|..|+...... ..+..        ..+++.++.  ........+
T Consensus        23 ~~~~~i~~g~--~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   98 (301)
T d1l0qa2          23 KVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTL   98 (301)
T ss_dssp             EEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE--EEETTTTEE
T ss_pred             eEEEEEECCC--CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccc--cccccccee
Confidence            4566777775  7999999999997764 55789999999765432 22211        112222222  233455678


Q ss_pred             EEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEE
Q 024436           93 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVG  171 (268)
Q Consensus        93 ~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va  171 (268)
                      ..++..+++..........|+.++++|||+.++++......+..++.....  ....+ .....|..++++++++ +|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~  175 (301)
T d1l0qa2          99 SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTV-SVGRSPKGIAVTPDGTKVYVA  175 (301)
T ss_dssp             EEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECCSSEEEEEECTTSSEEEEE
T ss_pred             eecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc--eeeec-ccCCCceEEEeeccccceeee
Confidence            888888787777777778899999999999999999888899999876421  11122 2234588999999986 6666


Q ss_pred             EecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCC---------CcEEEEEECC-CCCEEEEEEcCCCCceece
Q 024436          172 IHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSG---------NGGMAMRISE-QGNVLEILEEIGRKMWRSI  241 (268)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~  241 (268)
                      ...... .   ........+....+..+..+....+.....         ..+.+..+|. +++++..+...     ..+
T Consensus       176 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-----~~~  246 (301)
T d1l0qa2         176 NFDSMS-I---SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-----PDP  246 (301)
T ss_dssp             ETTTTE-E---EEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-----SSE
T ss_pred             cccccc-c---ccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-----CCE
Confidence            665442 1   111233344444444332221111111000         0023444444 24555444431     123


Q ss_pred             EEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 024436          242 SEVEE--KDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       242 s~~~~--~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      ..++.  ++.+||+++..++.|.++|+++
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            44444  3457999999999999999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=5.9e-13  Score=112.34  Aligned_cols=148  Identities=13%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC-C-------eeEEEeecCCcceEEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR-N-------HISVILSGDKTGRLMKY   95 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~-~-------~~~~~~~~~~~g~v~~~   95 (268)
                      ....+..+.+..|.+++++++|++++++...+++.+++++|+.+..+....... +       -...+..+...++|+++
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~  183 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  183 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeee
Confidence            455565666788999999999999988888899999999998655543221110 0       01123344556788889


Q ss_pred             eCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-C-CCCCCceEEcCCCCEEE
Q 024436           96 DPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        96 d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l-~g~Pdgia~d~dG~l~v  170 (268)
                      |+++..+..+.  ..+..|.||+++++|+ |||+|+.+ ++|.+|+.+|..   ...+.. . .+.|.+|++++||+|||
T Consensus       184 d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~---~~~~~~~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         184 NYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             ETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             ecCCceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCE---EEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence            98843343432  3577899999999997 99999754 589999987632   233432 2 24799999999999999


Q ss_pred             EEecC
Q 024436          171 GIHSR  175 (268)
Q Consensus       171 a~~~~  175 (268)
                      ++...
T Consensus       260 ~~~n~  264 (279)
T d1q7fa_         260 ASKDY  264 (279)
T ss_dssp             EETTT
T ss_pred             EeCCC
Confidence            98543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.2e-11  Score=101.14  Aligned_cols=186  Identities=14%  Similarity=0.068  Sum_probs=122.3

Q ss_pred             cceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCe--------eEEEeecCCcceEEEEeCCCCeEEEe-
Q 024436           36 PESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNH--------ISVILSGDKTGRLMKYDPATKQVTVL-  105 (268)
Q Consensus        36 P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~g~v~~~d~~~~~~~~~-  105 (268)
                      +.+++++.. +.+|+++...++|.+.+.+|...+.+....-..+.        -..++.+...++|.++++++...+.+ 
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~  117 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe
Confidence            457889976 45566677889999999887643333221111110        01223445667888888875444444 


Q ss_pred             ecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCC-CEEEEEecCCCccee
Q 024436          106 LGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRG-GFWVGIHSRRKGISK  181 (268)
Q Consensus       106 ~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG-~l~va~~~~~~~~~~  181 (268)
                      ..++..|.+|+++|...+||+++...  .+|++.+++|..   ...+.. --..|.||++|+.+ +||+++...+.    
T Consensus       118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~----  190 (263)
T d1npea_         118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR----  190 (263)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTTTE----
T ss_pred             cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---ceeeeeecccccceEEEeecCcEEEEEeCCCCE----
Confidence            45678999999999988999998764  479999998742   333332 11479999999765 58888765432    


Q ss_pred             eeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeE
Q 024436          182 LVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYA  261 (268)
Q Consensus       182 ~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v  261 (268)
                                                         +.+++.+|.-.+.+-.  |  ++.+.+++.++++||++++..+.|
T Consensus       191 -----------------------------------I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwtd~~~~~I  231 (263)
T d1npea_         191 -----------------------------------AECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSV  231 (263)
T ss_dssp             -----------------------------------EEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEE
T ss_pred             -----------------------------------EEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEEECCCCEE
Confidence                                               3334444433333222  1  234556777899999999999999


Q ss_pred             EEEeCC
Q 024436          262 GLYNYS  267 (268)
Q Consensus       262 ~~~~~~  267 (268)
                      .+++..
T Consensus       232 ~~~~~~  237 (263)
T d1npea_         232 IAMDLA  237 (263)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            999875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-10  Score=97.24  Aligned_cols=194  Identities=11%  Similarity=0.017  Sum_probs=125.3

Q ss_pred             cCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeE----EEEEEcCCCCC------e--eEEEeecCCcceEEEEe
Q 024436           30 IEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRW----LHFARTSPNRN------H--ISVILSGDKTGRLMKYD   96 (268)
Q Consensus        30 ~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~----~~~~~~~~~~~------~--~~~~~~~~~~g~v~~~d   96 (268)
                      ++.+..|.++++++..+ +|+++..++.|.+.+.++...    .......-..+      |  -..++.+...++|.+++
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEe
Confidence            34567889999998654 566777889999988776321    11111110111      0  11234555667888888


Q ss_pred             CCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCC-CEEEEE
Q 024436           97 PATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRG-GFWVGI  172 (268)
Q Consensus        97 ~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG-~l~va~  172 (268)
                      .++...+. +...+..|.+|+++|...+||+++... .+|++.+++|.   ....+.. .-..|.||++|+.+ +||.++
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceecccccccceeeEEEeeccccEEEEec
Confidence            87544433 456778999999999877999999765 48999999973   2444433 22479999999865 589887


Q ss_pred             ecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCE-EEEEEcCCCCceeceEEEEEeCCEE
Q 024436          173 HSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNV-LEILEEIGRKMWRSISEVEEKDGNL  251 (268)
Q Consensus       173 ~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~g~~~~~~s~~~~~~g~L  251 (268)
                      ...+                                       .+..++.+|.- ........  .+..+.+++..+++|
T Consensus       183 ~~~~---------------------------------------~I~~~~~dG~~~~~~~~~~~--~~~~p~~lav~~~~l  221 (266)
T d1ijqa1         183 SKLH---------------------------------------SISSIDVNGGNRKTILEDEK--RLAHPFSLAVFEDKV  221 (266)
T ss_dssp             TTTT---------------------------------------EEEEEETTSCSCEEEEECTT--TTSSEEEEEEETTEE
T ss_pred             CCcC---------------------------------------EEEEEECCCCCEEEEEeCCC--cccccEEEEEECCEE
Confidence            5543                                       23444445432 23333332  245566777788999


Q ss_pred             EEeeCCCCeEEEEeCC
Q 024436          252 WIGSVNMPYAGLYNYS  267 (268)
Q Consensus       252 yv~s~~~~~v~~~~~~  267 (268)
                      |++++..+.|.+++..
T Consensus       222 y~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         222 FWTDIINEAIFSANRL  237 (266)
T ss_dssp             EEEETTTTEEEEEETT
T ss_pred             EEEECCCCeEEEEECC
Confidence            9999999999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.1e-11  Score=102.30  Aligned_cols=148  Identities=14%  Similarity=0.078  Sum_probs=102.8

Q ss_pred             EEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCcceEEE
Q 024436           26 VQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g~v~~   94 (268)
                      +++...++..|+++|+|.- +++|+++...++|.+++++|+.........          |.+.+++-.-.+....+|++
T Consensus        71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            3343345678999999975 555566777899999999887433322111          11223332222334567999


Q ss_pred             EeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436           95 YDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  173 (268)
Q Consensus        95 ~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~  173 (268)
                      .+.++...+. +.+++..|+||++++.++.||++|...++|.+++++|.   ..+.+......|.+|+++ +++||++++
T Consensus       151 ~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~~P~~lav~-~~~lYwtd~  226 (263)
T d1npea_         151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDW  226 (263)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEET
T ss_pred             ecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCCCcEEEEEE-CCEEEEEEC
Confidence            9887444344 34678999999999999999999999999999999863   234444422369999998 578999999


Q ss_pred             cCCC
Q 024436          174 SRRK  177 (268)
Q Consensus       174 ~~~~  177 (268)
                      ..+.
T Consensus       227 ~~~~  230 (263)
T d1npea_         227 KTNS  230 (263)
T ss_dssp             TTTE
T ss_pred             CCCE
Confidence            8774

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-10  Score=95.76  Aligned_cols=147  Identities=12%  Similarity=0.082  Sum_probs=103.3

Q ss_pred             EEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCcceEEE
Q 024436           26 VQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g~v~~   94 (268)
                      +++-..++..|+|+|+|+- +++|+++...++|.+.+.+|..........          +...+++-. .....++|++
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~-~~~~~~~I~r  147 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT-DWGTPAKIKK  147 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE-ECSSSCEEEE
T ss_pred             EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEe-ccCCCcceeE
Confidence            3344455678999999975 555566667899999999987533322211          111222211 2234568999


Q ss_pred             EeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEE
Q 024436           95 YDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWV  170 (268)
Q Consensus        95 ~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~v  170 (268)
                      .+.++...+.+. +.+..|+||++++.+++||++|...++|.+++++|..   ++.+...   ...|.+|+++ +++||+
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~  223 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFW  223 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEE
Confidence            999855555554 6789999999999999999999999999999998742   3444332   1358899999 578999


Q ss_pred             EEecCCC
Q 024436          171 GIHSRRK  177 (268)
Q Consensus       171 a~~~~~~  177 (268)
                      +++..+.
T Consensus       224 td~~~~~  230 (266)
T d1ijqa1         224 TDIINEA  230 (266)
T ss_dssp             EETTTTE
T ss_pred             EECCCCe
Confidence            9988763

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=1.9e-09  Score=94.03  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=87.4

Q ss_pred             EEEecCCCCCcceEEECCCCCEEEEEeCC-CeEEEEeCCCCeEEEEEE-cC---------CCCCeeEEEeecC-------
Q 024436           26 VQYQIEGAIGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFAR-TS---------PNRNHISVILSGD-------   87 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~~-g~I~~~~~~g~~~~~~~~-~~---------~~~~~~~~~~~~~-------   87 (268)
                      ....++....|..+++++||+.+|+.... -..+.+++++........ .+         +++..++......       
T Consensus        32 ~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~  111 (365)
T d1jofa_          32 KRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             EEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             eeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEE
Confidence            34456655568899999999999987543 233445666653222211 11         1122121111111       


Q ss_pred             -------CcceEEEEeCCCCeEEEe-----ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEeC-
Q 024436           88 -------KTGRLMKYDPATKQVTVL-----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQL-  153 (268)
Q Consensus        88 -------~~g~v~~~d~~~~~~~~~-----~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~l-  153 (268)
                             ..+.++.++.. ++....     ......|.+++|+|||++||+++...++|++|+.+.. .+......... 
T Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         112 NPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             EEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             eEccCCCCcceeEeeeec-ceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence                   23334444433 332221     1234568899999999999999999999999987632 11111111111 


Q ss_pred             -CCCCCceEEcCCCC-EEEEEecCC
Q 024436          154 -PGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       154 -~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                       ...|.+++++++|+ +|++....+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCceEEEEECCCCceEEEeccCCC
Confidence             23699999999997 667776555

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.24  E-value=9e-10  Score=93.32  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC--CCCCceEE
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKR  162 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~  162 (268)
                      .+...++|++++++ ++.+.+......|+|+++++||+ |||++...+.+++++..+.. +....+...+  +.|+++++
T Consensus        44 t~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~  120 (302)
T d2p4oa1          44 TNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITP  120 (302)
T ss_dssp             EETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT-SCEEEEEECTTCSCEEEEEE
T ss_pred             EeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccc-cceeeccccCCccccceeEE
Confidence            44567899999998 77777877778999999999997 99999999999988876532 3444555543  46999999


Q ss_pred             cCCCCEEEEEecCC
Q 024436          163 SPRGGFWVGIHSRR  176 (268)
Q Consensus       163 d~dG~l~va~~~~~  176 (268)
                      +++|++|++.....
T Consensus       121 ~~~g~~~v~~~~~~  134 (302)
T d2p4oa1         121 LSDTQYLTADSYRG  134 (302)
T ss_dssp             SSSSEEEEEETTTT
T ss_pred             ccCCCEEeeccccc
Confidence            99999999987765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=1.8e-08  Score=85.15  Aligned_cols=212  Identities=16%  Similarity=0.128  Sum_probs=129.2

Q ss_pred             CEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--------CCCCeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--------PNRNHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~v~~   94 (268)
                      ..+++.-....--||...++ +|++++++...++|+|+++++.....+....        +++.+   ++..  ...+++
T Consensus         8 ~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l---~va~--~~gl~~   82 (295)
T d2ghsa1           8 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQ---LIAS--DDGLFL   82 (295)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEE---EEEE--TTEEEE
T ss_pred             eEEEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCE---EEEE--eCccEE
Confidence            34455544333348999886 6888999999999999999876544332111        11111   1111  246999


Q ss_pred             EeCCCCeEEEeec-----CCCCcceEEEccCCCEEEEEecC------CcEEEEEEccCCCCCceeEE-EeCCCCCCceEE
Q 024436           95 YDPATKQVTVLLG-----NLSFPNGVALSEDGNYILLAETT------SCRILRYWLKTSKAGTIEIV-AQLPGFPDNIKR  162 (268)
Q Consensus        95 ~d~~~~~~~~~~~-----~~~~pnGia~spdg~~lyva~~~------~~~I~~~~~~~~~~g~~~~~-~~l~g~Pdgia~  162 (268)
                      +|+++++.+.+.+     ....+|.+.++|+|+ +|+++..      .+.+++++  .+   ....+ ..+ ..|+|+++
T Consensus        83 ~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~g---~~~~~~~~~-~~~Ng~~~  155 (295)
T d2ghsa1          83 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---KVTKLFADI-SIPNSICF  155 (295)
T ss_dssp             EETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---EEEEEEEEE-SSEEEEEE
T ss_pred             eecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--CC---cEEEEeecc-CCcceeee
Confidence            9999998887753     234689999999996 8998753      23455543  22   23333 234 36999999


Q ss_pred             cCCCC-EEEEEecCCCcceeeeEeeCcc-------ce--eeeeccccc---eeee-----eeccccCCCcEEEEEECCCC
Q 024436          163 SPRGG-FWVGIHSRRKGISKLVLSFPWI-------GN--VLIKLPIDI---VKIH-----SSLVKLSGNGGMAMRISEQG  224 (268)
Q Consensus       163 d~dG~-l~va~~~~~~~~~~~v~~~~~~-------g~--~l~~i~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~G  224 (268)
                      +++++ +|+++...+ +    |.+|..+       ++  .....+...   ....     .++-..-.. +.+++++|+|
T Consensus       156 s~d~~~l~~~dt~~~-~----I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-g~V~~~dp~G  229 (295)
T d2ghsa1         156 SPDGTTGYFVDTKVN-R----LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-GAVDRYDTDG  229 (295)
T ss_dssp             CTTSCEEEEEETTTC-E----EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-TEEEEECTTC
T ss_pred             cCCCceEEEeecccc-e----eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-CceEEecCCC
Confidence            99996 899998776 3    4444321       11  111111110   0100     011011112 4688999999


Q ss_pred             CEEEEEEcCCCCceeceEEEEEe---CCEEEEeeCC
Q 024436          225 NVLEILEEIGRKMWRSISEVEEK---DGNLWIGSVN  257 (268)
Q Consensus       225 ~~~~~~~~~~g~~~~~~s~~~~~---~g~Lyv~s~~  257 (268)
                      +.+..+.-|.    +.+|.++.-   .++|||++..
T Consensus       230 ~~~~~i~lP~----~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         230 NHIARYEVPG----KQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CEEEEEECSC----SBEEEEEEESTTSCEEEEEEBC
T ss_pred             cEeeEecCCC----CceEEEEEeCCCCCEEEEEECC
Confidence            9999998763    346777663   3689999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.15  E-value=4.4e-09  Score=86.67  Aligned_cols=109  Identities=18%  Similarity=0.173  Sum_probs=76.7

Q ss_pred             EeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEE
Q 024436           83 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  162 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~  162 (268)
                      +......+.|..+|++++++.........|.+++|+|||++|||++...++|.+|++....  ....+ .....|.++++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~-~~~~~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATV-PAGSSPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEE-ECSSSEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeee-ecccccccccc
Confidence            3455677899999999998776666567799999999999999999999999999987532  11222 23346899999


Q ss_pred             cCCCCE-EEEEecCCCcceeeeEe-eCccceeeeecccc
Q 024436          163 SPRGGF-WVGIHSRRKGISKLVLS-FPWIGNVLIKLPID  199 (268)
Q Consensus       163 d~dG~l-~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~  199 (268)
                      +++|+. +++..... .    +.. ....++....+...
T Consensus        82 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          82 SPDGKQVYVTNMASS-T----LSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             CTTSSEEEEEETTTT-E----EEEEETTTTEEEEEEECS
T ss_pred             ccccccccccccccc-e----eeecccccceeeeecccc
Confidence            999985 55544443 2    222 33456666655543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=5.7e-08  Score=81.05  Aligned_cols=145  Identities=12%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeC-CCeEEEEe--CCCCeEEEEEE-----------cCCCCCeeEEEeecCCc
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWH--QDQRRWLHFAR-----------TSPNRNHISVILSGDKT   89 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~-~g~I~~~~--~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~   89 (268)
                      .+++++.++  .|.+|+++|||+.+|+... +++|..++  .++........           .++++.++...  ....
T Consensus        29 ~~~~~~~~~--~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~--~~~~  104 (333)
T d1ri6a_          29 LTQVVDVPG--QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG--SYNA  104 (333)
T ss_dssp             EEEEEECSS--CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE--ETTT
T ss_pred             EEEEEcCCC--CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeec--ccCC
Confidence            456667775  7999999999998877654 78777654  33332222111           12344444322  2234


Q ss_pred             ceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE--EEeC--CCCCCceEE
Q 024436           90 GRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI--VAQL--PGFPDNIKR  162 (268)
Q Consensus        90 g~v~~~d~~~~~~~~---~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~--~~~l--~g~Pdgia~  162 (268)
                      +.+..++.+......   .......|.+++++||++++|+++.....|..|+...........  ....  ...|..+++
T Consensus       105 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~  184 (333)
T d1ri6a_         105 GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  184 (333)
T ss_dssp             TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEE
Confidence            444444433233222   234566789999999999999999999999999986432111111  1111  236899999


Q ss_pred             cCCCCEEEEE
Q 024436          163 SPRGGFWVGI  172 (268)
Q Consensus       163 d~dG~l~va~  172 (268)
                      ++++...+..
T Consensus       185 ~~~~~~~~~~  194 (333)
T d1ri6a_         185 HPNEQYAYCV  194 (333)
T ss_dssp             CTTSSEEEEE
T ss_pred             eccceeEEee
Confidence            9999754433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=1.1e-08  Score=90.82  Aligned_cols=105  Identities=12%  Similarity=0.022  Sum_probs=71.0

Q ss_pred             ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEE
Q 024436           85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKR  162 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~  162 (268)
                      .....|.|..+|.+++++.........|++++|||||++||++.. .+.|..|+++..+   .....++  ...|.++++
T Consensus        37 ~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~---~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          37 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKE---PTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSS---CCEEEEEECCSEEEEEEE
T ss_pred             EEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCC---ceEEEEEecCCCCCCeEE
Confidence            335678888899888877665544567999999999999999864 5799999987532   2222222  124777766


Q ss_pred             ----cCCCC-EEEEEecCCCcceeeeEee-Cccceeeeeccc
Q 024436          163 ----SPRGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIKLPI  198 (268)
Q Consensus       163 ----d~dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~  198 (268)
                          ++||+ ||++....+.     +..+ ..+++.+..++.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~-----v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQ-----YVIMDGETLEPKKIQST  149 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTE-----EEEEETTTCCEEEEEEC
T ss_pred             ecccCCCCCEEEEEcCCCCe-----EEEEeCccccceeeecc
Confidence                46897 6787776653     3333 356666655543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=4.3e-08  Score=87.01  Aligned_cols=150  Identities=8%  Similarity=-0.084  Sum_probs=101.9

Q ss_pred             CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-C--eEEE---------EEE---cCCCCCeeEEEeec
Q 024436           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-R--RWLH---------FAR---TSPNRNHISVILSG   86 (268)
Q Consensus        22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~--~~~~---------~~~---~~~~~~~~~~~~~~   86 (268)
                      .+.+..++.+.  .|++++|+|||+.+|+...++.|..|+.+. +  ....         .+.   .+++++++...  .
T Consensus        52 ~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs--~  127 (432)
T d1qksa2          52 YEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG--A  127 (432)
T ss_dssp             CCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE--E
T ss_pred             CcEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEE--c
Confidence            34677777775  799999999999999988899999998642 2  1111         111   13445554332  2


Q ss_pred             CCcceEEEEeCCCCeEEEeec------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC
Q 024436           87 DKTGRLMKYDPATKQVTVLLG------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP  154 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~  154 (268)
                      ...+.+..+|.+++++.....            ....+.+|+++|||+.+|++....++|+.++..+.+......+ ...
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g  206 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAE  206 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECC
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE-ccc
Confidence            345678888988877654321            1234567999999999999999999999999875321111111 223


Q ss_pred             CCCCceEEcCCCC-EEEEEecCC
Q 024436          155 GFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       155 g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      ..|.+++++|||+ ++++.....
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGT
T ss_pred             CccccceECCCCCEEEEeccccc
Confidence            4799999999998 566665554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=3.7e-08  Score=85.53  Aligned_cols=142  Identities=15%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             CCCcceEEECCCCCEEEEE-eCCCeEEEEe--CCCCeEEE--EEEc-----------CCCCCeeEEEeecCCcceEE--E
Q 024436           33 AIGPESLAFDALGEGPYTG-VSDGRIIKWH--QDQRRWLH--FART-----------SPNRNHISVILSGDKTGRLM--K   94 (268)
Q Consensus        33 ~~~P~gia~~~dG~~l~~~-~~~g~I~~~~--~~g~~~~~--~~~~-----------~~~~~~~~~~~~~~~~g~v~--~   94 (268)
                      ...|++++++|||+.+|+. ...++|+.++  .+|.....  ....           .+++++++...+  ..+.|.  .
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~  221 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYV  221 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEE
Confidence            3468999999999976664 5578887764  44543211  1111           122234443333  344554  4


Q ss_pred             EeCCCCeEEEe------e------------cCCCCcceEEEccCCCEEEEEecCCcE-----EEEEEccCC-CCCceeEE
Q 024436           95 YDPATKQVTVL------L------------GNLSFPNGVALSEDGNYILLAETTSCR-----ILRYWLKTS-KAGTIEIV  150 (268)
Q Consensus        95 ~d~~~~~~~~~------~------------~~~~~pnGia~spdg~~lyva~~~~~~-----I~~~~~~~~-~~g~~~~~  150 (268)
                      ++..+......      .            .....+..|+++|||++||++++..+.     |..|+++.. .+.....+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~  301 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence            44432221111      0            111235689999999999999875443     888887631 22212222


Q ss_pred             EeC---CCCCCceEEcC-CCC-EEEEEecCC
Q 024436          151 AQL---PGFPDNIKRSP-RGG-FWVGIHSRR  176 (268)
Q Consensus       151 ~~l---~g~Pdgia~d~-dG~-l~va~~~~~  176 (268)
                      ...   .+.|.+|++++ +|+ |||+....+
T Consensus       302 ~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~  332 (365)
T d1jofa_         302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             eEEEcCCCCccEEEecCCCCCEEEEEeCCCC
Confidence            221   24799999997 787 777776665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=1.3e-06  Score=72.46  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=71.7

Q ss_pred             eEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc-----------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART-----------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        38 gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      |+|++++|+++++...+++|..||.+..........           +|++.+++  ......+.|+.+|.++++.....
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~--v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE--EEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE--EEECCCCcEEEEeCccCeeeeee
Confidence            578999999999999999999999875543332221           23334443  23445689999999988765433


Q ss_pred             cC-------CCCcceEEEccCCCEEEEEec-----------CCcEEEEEEccC
Q 024436          107 GN-------LSFPNGVALSEDGNYILLAET-----------TSCRILRYWLKT  141 (268)
Q Consensus       107 ~~-------~~~pnGia~spdg~~lyva~~-----------~~~~I~~~~~~~  141 (268)
                      ..       ...|.+++++|||+++|+++.           ....+..++...
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence            21       135889999999999999864           345677777653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.88  E-value=1.8e-06  Score=75.45  Aligned_cols=168  Identities=8%  Similarity=-0.053  Sum_probs=106.4

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE------------E---cCCCCCeeEEEeecC
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA------------R---TSPNRNHISVILSGD   87 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~------------~---~~~~~~~~~~~~~~~   87 (268)
                      +.+.+++.+.  .|++++|+|||+.+|+...++.|..|+.+........            .   .++++.++...  ..
T Consensus        53 ~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~--~~  128 (426)
T d1hzua2          53 KIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG--AY  128 (426)
T ss_dssp             SEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEE--EE
T ss_pred             cEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEe--ec
Confidence            3567777764  7999999999999999999999999987543211111            0   12344544322  22


Q ss_pred             CcceEEEEeCCCCeEEEeec------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC
Q 024436           88 KTGRLMKYDPATKQVTVLLG------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG  155 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g  155 (268)
                      ..+.+..+|..+++......            ....+..++.++|++.++++....+++..+............. ....
T Consensus       129 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~  207 (426)
T d1hzua2         129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAP  207 (426)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-ECCS
T ss_pred             CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-ccCC
Confidence            34677778887766544321            1123456899999999999999999998888764322112222 2234


Q ss_pred             CCCceEEcCCCCEEE-EEecCCCcceeeeEeeCccceeeeecccc
Q 024436          156 FPDNIKRSPRGGFWV-GIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       156 ~Pdgia~d~dG~l~v-a~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      .|.+++++++|+++. +..... .+   ......+++....++.+
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~-~~---~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSN-KV---AVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCS-EE---EEEETTTTEEEEEEECS
T ss_pred             ccEeeeECCCCcEEEeeeeccc-ce---eeeecccccEEEEeccC
Confidence            689999999998544 544443 21   22245667766665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.87  E-value=1.8e-07  Score=82.18  Aligned_cols=88  Identities=14%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc---
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS---  163 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d---  163 (268)
                      ..+|+|..+|..++++.........|++|+|||||++||++.. .+.|.+|++++++......+. ....|.+++++   
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~-~~~~~~~~~~s~~~  116 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFK  116 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCST
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEe-CCCCCcceEEeeee
Confidence            3456677777776665444434456999999999999999875 578999999854321111111 11236666554   


Q ss_pred             -CCCC-EEEEEecCC
Q 024436          164 -PRGG-FWVGIHSRR  176 (268)
Q Consensus       164 -~dG~-l~va~~~~~  176 (268)
                       |||+ ++++....+
T Consensus       117 spDG~~l~v~~~~~~  131 (426)
T d1hzua2         117 GYEDRYTIAGAYWPP  131 (426)
T ss_dssp             TCTTTEEEEEEEESS
T ss_pred             cCCCCEEEEeecCCC
Confidence             6897 677776665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.7e-06  Score=70.42  Aligned_cols=129  Identities=11%  Similarity=0.109  Sum_probs=76.2

Q ss_pred             EEEEeCCCeEEEEeC--CCCe-EEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe--ecCCCCcc
Q 024436           48 PYTGVSDGRIIKWHQ--DQRR-WLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPN  113 (268)
Q Consensus        48 l~~~~~~g~I~~~~~--~g~~-~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pn  113 (268)
                      |+++..+++|..|+.  ++.. ......         .+|++.+++........-.+|.+++.+...+..  ......|.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            344556777777764  3321 111111         245555554332222233456677664444433  33446799


Q ss_pred             eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCC
Q 024436          114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  176 (268)
Q Consensus       114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~  176 (268)
                      +|+++|||++||+++.....|..++.+.............+..|.++++++||+ ++++.....
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            999999999999999988999998887532111111122345799999999998 455555543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.73  E-value=2.8e-06  Score=70.13  Aligned_cols=117  Identities=12%  Similarity=0.008  Sum_probs=78.3

Q ss_pred             CCCEEEEecCC-CCCcceEEECCCCCEEEE-EeCCCeEEEEeCCC-CeEEEEEE--------------cCCCCCeeEEEe
Q 024436           22 TQGVVQYQIEG-AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQ-RRWLHFAR--------------TSPNRNHISVIL   84 (268)
Q Consensus        22 ~~~~~~i~~~~-~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g-~~~~~~~~--------------~~~~~~~~~~~~   84 (268)
                      .+.+.+++++. ...|.+++++|||+.+|+ +..++.|..|+... +.......              .++++.++....
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  100 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEee
Confidence            34677788764 357999999999998765 55689999999754 32222111              123333222110


Q ss_pred             ---------ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           85 ---------SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        85 ---------~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                               .......+..+|..+++..........|++++++|||+++|+++   +.+.+|+...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~  163 (337)
T d1pbyb_         101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---RDLHVMDPEA  163 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---SSEEEEETTT
T ss_pred             cCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc---CCcceeeeec
Confidence                     11234678888998888777666677899999999999999875   3456677654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=5.2e-07  Score=75.91  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC---------CcEEEEEEccCCCCCceeEEEe-------
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT---------SCRILRYWLKTSKAGTIEIVAQ-------  152 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~---------~~~I~~~~~~~~~~g~~~~~~~-------  152 (268)
                      ...|+.+|.+++++.........| +++|||||++|||++..         .+.|.+||..+++.  ...+..       
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~--~~~~~~~~~~~~~  103 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADIELPDAPRFL  103 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCC
T ss_pred             cCeEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE--EEEEecCCcceee
Confidence            457888888887765444333334 79999999999998742         46799999875432  111111       


Q ss_pred             CCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436          153 LPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  199 (268)
Q Consensus       153 l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~  199 (268)
                      ....|.+++++++|+ ++++.......+   ......+++.+..++.+
T Consensus       104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~  148 (355)
T d2bbkh_         104 VGTYPWMTSLTPDGKTLLFYQFSPAPAV---GVVDLEGKAFKRMLDVP  148 (355)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEE---EEEETTTTEEEEEEECC
T ss_pred             cCCCCceEEEecCCCeeEEecCCCCcee---eeeecCCCcEeeEEecC
Confidence            123689999999997 677776554321   11245677777777665

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.67  E-value=2.1e-05  Score=66.31  Aligned_cols=113  Identities=4%  Similarity=-0.204  Sum_probs=64.9

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEEcCCC-------CCeeEEEeec
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV----------SDGRIIKWHQDQRRWLHFARTSPN-------RNHISVILSG   86 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~----------~~g~I~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~   86 (268)
                      -+.+++.+.   +.+++++|||+.+++..          .++.|..|+...............       .+....+..+
T Consensus        59 ~~~~~~~~~---~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          59 ILGHVNGGF---LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             EEEEEeCCC---CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            444555443   44899999999998864          246677777654322211111000       0011111121


Q ss_pred             CC---------cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           87 DK---------TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        87 ~~---------~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      .+         .+.+..++..+.+.   ......|.+++++|+|+.+|++....+++.+++.++.
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSD---DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeE---EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence            22         22233333332222   2334568899999999999999999999999998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.66  E-value=3.2e-06  Score=71.59  Aligned_cols=87  Identities=9%  Similarity=-0.031  Sum_probs=58.2

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC---------CcEEEEEEccCCCCCceeEEE--e----
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT---------SCRILRYWLKTSKAGTIEIVA--Q----  152 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~---------~~~I~~~~~~~~~~g~~~~~~--~----  152 (268)
                      ..+.|+.+|.+++++........ +.+++|+|||++||++...         .+.|.+||..+.+.  ...+.  .    
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~  121 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRF  121 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE--EEEEecCCccee
Confidence            34578888888777655444333 4489999999999998753         36788999875331  11111  0    


Q ss_pred             -CCCCCCceEEcCCCC-EEEEEecCCC
Q 024436          153 -LPGFPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       153 -l~g~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                       ....|.++++.++|+ +++..+....
T Consensus       122 ~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_         122 DVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             EeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence             113588999999996 7777776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=8.6e-07  Score=75.84  Aligned_cols=165  Identities=7%  Similarity=-0.215  Sum_probs=98.4

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC---------CcEEEEEEccCCCCCceeEEEeC-----
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT---------SCRILRYWLKTSKAGTIEIVAQL-----  153 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~---------~~~I~~~~~~~~~~g~~~~~~~l-----  153 (268)
                      .+..||.+|++++++........ .++++++|||++||+++..         .+.|++||..+.+.   .....+     
T Consensus        44 g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~---~~~i~~p~~~~  119 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPR  119 (368)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCS
T ss_pred             CcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE---eeeecCCccce
Confidence            45679999999888766554433 4489999999999998742         35699999875321   111111     


Q ss_pred             ---CCCCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEE
Q 024436          154 ---PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLE  228 (268)
Q Consensus       154 ---~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  228 (268)
                         ...|.++++.+||+ +|++....+.     +.. ...+++.+..++.+....  ..+. .+  ...+..+++|++..
T Consensus       120 ~~~g~~p~~~a~SpDGk~l~va~~~~~~-----v~~~d~~~~~~~~~~~~~~~~~--~~~~-~~--~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         120 FSVGPRVHIIGNCASSACLLFFLFGSSA-----AAGLSVPGASDDQLTKSASCFH--IHPG-AA--ATHYLGSCPASLAA  189 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSC-----EEEEEETTTEEEEEEECSSCCC--CEEE-ET--TEEECCCCTTSCEE
T ss_pred             ecccCCccceEECCCCCEEEEEeCCCCe-----EEEEECCCCcEeEEeeccCcce--EccC-CC--ceEEEEcCCCCEEE
Confidence               13689999999996 8888876653     322 346788888776652110  0111 11  13455566666554


Q ss_pred             EEEcCCCCcee---------------------ceEEEEEeCCEEEEeeCCCCeEEEEeC
Q 024436          229 ILEEIGRKMWR---------------------SISEVEEKDGNLWIGSVNMPYAGLYNY  266 (268)
Q Consensus       229 ~~~~~~g~~~~---------------------~~s~~~~~~g~Lyv~s~~~~~v~~~~~  266 (268)
                      +-.+..+....                     ....+...++++|+.++..+.+.+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECC
T ss_pred             EEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEee
Confidence            43221121100                     011223356778888888777776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.58  E-value=3e-05  Score=64.68  Aligned_cols=142  Identities=11%  Similarity=0.104  Sum_probs=85.9

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe--EE-EEEE---------cCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WL-HFAR---------TSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~--~~-~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      +.-..-.+++++|+|++++++..||.|..|+.....  .. .+..         ..++..++... .......+..++.+
T Consensus        56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~~~~~~~~~v~~~~  134 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV-GEGRERFGHVFLFD  134 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE-ECCSSCSEEEEETT
T ss_pred             CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccc-cccccccccccccc
Confidence            333567899999999999999999999999865431  11 1111         12233333222 21222223334444


Q ss_pred             CCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEEEecCC
Q 024436           99 TKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus        99 ~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +++. ..+.......+.++|+|+++.++++.+..+.|..|+.....   ...... -......++++|+|+++++....+
T Consensus       135 ~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~---~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---FKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccceeeecccccccccccccccccc---cccccccccccccccccCccccccccccccc
Confidence            4433 23333334568899999999888888888999999987421   111111 122346889999999777665544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.56  E-value=5.3e-06  Score=69.13  Aligned_cols=127  Identities=17%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             EECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEE--------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCC
Q 024436           40 AFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFA--------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS  110 (268)
Q Consensus        40 a~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~  110 (268)
                      .|+| ||+++.+. ..|+|+.++.++.....+.        .-+|+++++... .......|+.+|.++++.+.+..+..
T Consensus         9 ~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~-~~~~g~~v~v~d~~~~~~~~~~~~~~   86 (360)
T d1k32a3           9 DFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIH-GTREGDFLGIYDYRTGKAEKFEENLG   86 (360)
T ss_dssp             EEEECGGGCEEEE-ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEE-EETTEEEEEEEETTTCCEEECCCCCC
T ss_pred             cccCCCCCEEEEE-ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEE-EcCCCCEEEEEECCCCcEEEeeCCCc
Confidence            5888 88866554 4678888887665433321        123444433221 22333468899999888888887777


Q ss_pred             CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436          111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va  171 (268)
                      ..+.++|+|||++|+++ ...+.++.|+.++...  ...+.........+++.+||++++.
T Consensus        87 ~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             SEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             eEEeeeeccccccccee-ccccccccccccccce--eeeeecccccccchhhccceeeeee
Confidence            78899999999977655 5678899999976431  2222223345678999999986543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=2.3e-05  Score=66.58  Aligned_cols=108  Identities=8%  Similarity=-0.046  Sum_probs=70.0

Q ss_pred             CcceEEECCCCCEEEEEe-----CCCeEEEEeCCCCeEEEEE--------EcCCCCCeeEEE--e-----ecCCcceEEE
Q 024436           35 GPESLAFDALGEGPYTGV-----SDGRIIKWHQDQRRWLHFA--------RTSPNRNHISVI--L-----SGDKTGRLMK   94 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~-----~~g~I~~~~~~g~~~~~~~--------~~~~~~~~~~~~--~-----~~~~~g~v~~   94 (268)
                      .+..++..++|+..++..     .+.+|+.+++++.......        ..++++.++...  .     .+...+.|..
T Consensus        21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            345556778888655432     3566888887665332221        123444433221  1     1233567999


Q ss_pred             EeCCCCeEEEee--------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           95 YDPATKQVTVLL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        95 ~d~~~~~~~~~~--------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      ||+.+++.....        .....|.+++|+|||++|||++...+.+..+++...
T Consensus       101 ~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            999988765432        124568899999999999999988899999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=2.2e-06  Score=70.74  Aligned_cols=86  Identities=13%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             CCcceEEEEeCCCCeEEEee---cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-C----CCCCC
Q 024436           87 DKTGRLMKYDPATKQVTVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L----PGFPD  158 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~---~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l----~g~Pd  158 (268)
                      ...++|..||.+++++....   .....|.+|+|+|||++|||+.+..+.|.+|++..++.  ...+.. .    ...|.
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~   85 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTT
T ss_pred             cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCccccccee
Confidence            35688999999888765433   23467899999999999999999899999999985331  111111 1    12588


Q ss_pred             ceEEcCCCC-EEEEEec
Q 024436          159 NIKRSPRGG-FWVGIHS  174 (268)
Q Consensus       159 gia~d~dG~-l~va~~~  174 (268)
                      ++++++||+ +|++...
T Consensus        86 ~v~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          86 GAALSPDGKTLAIYESP  102 (337)
T ss_dssp             CEEECTTSSEEEEEEEE
T ss_pred             eEEEcCCCcEEEEeecC
Confidence            999999997 5666543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.46  E-value=9.4e-06  Score=72.17  Aligned_cols=151  Identities=13%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC-----C--C--------------CeeEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-----N--R--------------NHISV   82 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~-----~--~--------------~~~~~   82 (268)
                      .++++.-+ +..|.+|++.|||++|++...+|+|+++++++.....+.....     .  +              .+++.
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            57777655 8899999999999988877668999999876543344333211     0  1              12222


Q ss_pred             Eeec-------C--Ccc-eEEEE--eCCCCeE---EEee-----cCCCCcceEEEccCCCEEEEEecC------------
Q 024436           83 ILSG-------D--KTG-RLMKY--DPATKQV---TVLL-----GNLSFPNGVALSEDGNYILLAETT------------  130 (268)
Q Consensus        83 ~~~~-------~--~~g-~v~~~--d~~~~~~---~~~~-----~~~~~pnGia~spdg~~lyva~~~------------  130 (268)
                      ....       .  ... .+.++  +......   +.+.     ...+...+|+|+|||+ ||++-..            
T Consensus        97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSC
T ss_pred             EEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCcccccccccc
Confidence            1110       0  011 12222  2221111   1121     2235567899999995 9998542            


Q ss_pred             --------------------CcEEEEEEccCCCCC--------ceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          131 --------------------SCRILRYWLKTSKAG--------TIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       131 --------------------~~~I~~~~~~~~~~g--------~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                                          .++|.|++.++....        ..++++..--.|-|+++|++|+||+++++..
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G~~  249 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPN  249 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSS
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeecccccc
Confidence                                378999998863211        1133443212599999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.9e-05  Score=61.55  Aligned_cols=135  Identities=12%  Similarity=0.065  Sum_probs=86.2

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      .-.+++++|||+.++++..++.|..|+...........            ..++..++   ......+.+..++..+++.
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~s~~~d~~i~~~~~~~~~~  175 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC---FSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE---EEEETTSCEEEEETTTTEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc
Confidence            34789999999999999999999999865432111111            11222222   1233556788888877776


Q ss_pred             EEeecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          103 TVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       103 ~~~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ...... ....+.++++++++.++++ ...+.|..|++..+.   .......++....++++++++++++....+
T Consensus       176 ~~~~~~~~~~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         176 VRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE---EEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccce---eecccccccceEEEEEcccccccceecccc
Confidence            554433 3445789999999877655 467899999986421   111122344567889999998766554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.44  E-value=2.8e-07  Score=81.91  Aligned_cols=98  Identities=12%  Similarity=-0.012  Sum_probs=62.6

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      ..+++.+|...+|+|++++|||+..|+... +..+. +..+|+.+                ........+..+|+.+.++
T Consensus       106 ~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~-~~~dg~~~----------------~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2         106 TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIP-QPNDGTDF----------------SLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEE-SSCSSSCC----------------CGGGEEEEEEEEETTTCSE
T ss_pred             EeeEEecCCCCCccceEEeccCCEEEEEeccCCccc-ccCccccc----------------ccccccceEEeecCcccee
Confidence            345556776679999999999998776543 34442 22233311                0111223456788887665


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436          103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  138 (268)
Q Consensus       103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~  138 (268)
                      .........|.+++++|||+++|++...++.+..++
T Consensus       169 ~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id  204 (441)
T d1qnia2         169 AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLA  204 (441)
T ss_dssp             EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             eEEEecCCCccceEECCCCCEEEEEecCCCceEEEe
Confidence            443333356999999999999999988766554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.40  E-value=1e-06  Score=78.22  Aligned_cols=171  Identities=9%  Similarity=-0.008  Sum_probs=97.4

Q ss_pred             eecCCcceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEE------------------EEEEccCCC
Q 024436           84 LSGDKTGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRI------------------LRYWLKTSK  143 (268)
Q Consensus        84 ~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I------------------~~~~~~~~~  143 (268)
                      ..+..+.+|.++|.++.+.....  .....|+|++|+|||+++||++...+.+                  ..++...  
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t--  165 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET--  165 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT--
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc--
Confidence            45567889999999998876643  3467899999999999999987765544                  2233322  


Q ss_pred             CCceeEEEe--CCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeeccccceeee-eeccc-----cCCCc
Q 024436          144 AGTIEIVAQ--LPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIH-SSLVK-----LSGNG  214 (268)
Q Consensus       144 ~g~~~~~~~--l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~-~~~~~-----~~~~~  214 (268)
                         .++..+  .++.|+++++++||+ +|+++..... ...   ....+++....+.....+.. .+.+.     .... 
T Consensus       166 ---~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~-~~~---id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~-  237 (441)
T d1qnia2         166 ---MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSER-AVD---LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS-  237 (441)
T ss_dssp             ---CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTC-CSS---HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC-
T ss_pred             ---ceeeEEEecCCCccceEECCCCCEEEEEecCCCc-eEE---EeccCcceEEEEEeCCccceEEEecCCCEEEeCCC-
Confidence               122222  356899999999997 7888876542 111   11122222222222100000 00000     0011 


Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  267 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~  267 (268)
                      +..+.... ..+++..+.-  |+. +.-..+..++.++|+++..++.|++++++
T Consensus       238 ~v~vvd~~~~~~v~~~IPv--gks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPV--PKN-PHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             CCCEEECSSSCSSEEEECC--BSS-CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             CcEEEEcccCCceEEEEeC--CCC-ccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            11222222 2344554432  221 22233344667799999999999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.38  E-value=1.3e-06  Score=72.51  Aligned_cols=85  Identities=15%  Similarity=0.065  Sum_probs=63.2

Q ss_pred             CCcceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--C----CCCCC
Q 024436           87 DKTGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--L----PGFPD  158 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l----~g~Pd  158 (268)
                      ...+.|..||.+++++....  .+...|.+++|+|||+++||+....++|.+|+++.++.  ...+..  .    ...|.
T Consensus        15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~--~~~~~~~~~~~~~~~~~~   92 (346)
T d1jmxb_          15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMY   92 (346)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCSTTEEEECSS
T ss_pred             cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee--eeeecccccccccCCceE
Confidence            45679999999999875432  34567999999999999999999999999999975321  111111  0    12589


Q ss_pred             ceEEcCCCC-EEEEEe
Q 024436          159 NIKRSPRGG-FWVGIH  173 (268)
Q Consensus       159 gia~d~dG~-l~va~~  173 (268)
                      ++++++||+ +|++..
T Consensus        93 ~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          93 SFAISPDGKEVYATVN  108 (346)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             EEEEecCCCEEEEEec
Confidence            999999996 777753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.38  E-value=5.1e-05  Score=63.15  Aligned_cols=150  Identities=8%  Similarity=-0.132  Sum_probs=83.3

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEEc-----------------CC
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV----------SDGRIIKWHQDQRRWLHFART-----------------SP   75 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~----------~~g~I~~~~~~g~~~~~~~~~-----------------~~   75 (268)
                      +-+.+++.+.  .| +++++|||+.+|+..          .++.|..|+............                 ++
T Consensus        39 ~~~~~~~~g~--~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          39 RVIGMIDGGF--LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             EEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             cEEEEEECCC--CC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence            3456666653  34 799999999887643          367898898765432222111                 12


Q ss_pred             CCCeeEEEeecCCcceEEEEeCCCCeEEEeecC--------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCce
Q 024436           76 NRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI  147 (268)
Q Consensus        76 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~  147 (268)
                      ++.++.. ........+..++..+++.......        ...+..+++++||+.+++.....+.+.+++.........
T Consensus       116 dg~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  194 (355)
T d2bbkh_         116 DGKTLLF-YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  194 (355)
T ss_dssp             TSSEEEE-EECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             CCCeeEE-ecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec
Confidence            2222221 1223345666777776665433211        112345899999999999988888888777653222111


Q ss_pred             eEEEeC--CCCCCceEE-cCCCCEEEEEecCC
Q 024436          148 EIVAQL--PGFPDNIKR-SPRGGFWVGIHSRR  176 (268)
Q Consensus       148 ~~~~~l--~g~Pdgia~-d~dG~l~va~~~~~  176 (268)
                      ..+...  ...+..+.+ ..+|++|+.....+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence            111110  112333333 45667888776655

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.29  E-value=8.1e-05  Score=63.50  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=80.4

Q ss_pred             CCcceEEECCCCCEEEEEe------------CCCeEEEEeCCCC--eEEEEEEc--CCC----CCeeEEEeec-------
Q 024436           34 IGPESLAFDALGEGPYTGV------------SDGRIIKWHQDQR--RWLHFART--SPN----RNHISVILSG-------   86 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~------------~~g~I~~~~~~g~--~~~~~~~~--~~~----~~~~~~~~~~-------   86 (268)
                      .+||.|+++|||..++++.            ..|+|+.++.+..  ........  .++    .++..++...       
T Consensus        35 ~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            5899999999998776542            1488888886432  11222111  111    1222222111       


Q ss_pred             --------CCcceEEEEeCCCCeEEEe----ecCCCCcceEEEccCCCEEEEEec-----------------CCcEEEEE
Q 024436           87 --------DKTGRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAET-----------------TSCRILRY  137 (268)
Q Consensus        87 --------~~~g~v~~~d~~~~~~~~~----~~~~~~pnGia~spdg~~lyva~~-----------------~~~~I~~~  137 (268)
                              ...-.++.++.++.+++-+    .+.+..||.|++..|| .+|+|+.                 ..+.++.|
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence                    1122345555553333221    2456789999999999 5999963                 12344444


Q ss_pred             EccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEEEEecCCC
Q 024436          138 WLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRRK  177 (268)
Q Consensus       138 ~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~~~~~  177 (268)
                      +  ++   ..++..+ +. .|+||++++|++ |||+......
T Consensus       194 ~--~~---~~~~~~~~l~-~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         194 S--PN---DVRVVAEGFD-FANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             C--SS---CEEEEEEEES-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred             c--CC---ceEEEcCCCC-ccceeEECCCCCEEEEEeCCCCe
Confidence            4  32   2344444 43 799999999985 8999988763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=0.00027  Score=59.75  Aligned_cols=135  Identities=7%  Similarity=0.038  Sum_probs=81.6

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -.+++++|||++++++..++.|..|+.++..+.....            .+|+++++.   ....++.|..+|.++++.+
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~---s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV---TCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE---EEETTSCEEEEEEETTEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE---EEECCCeEEEEeecccccc
Confidence            4789999999999999889999888876543322211            123444443   2223455666665545443


Q ss_pred             Ee---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-C---CCCCCceEEcCCCCEEEEEecCC
Q 024436          104 VL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L---PGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       104 ~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l---~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..   ...-.....++|+||++.|+++ +..+.|..|+++....  ...... .   .+....++++|+|+++++....+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~-s~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVG-SGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccceee-cccCcceeeeeecccc--cccccccccccccccccccccccccceeccccCc
Confidence            32   2233446789999999977655 4667777777764221  111111 1   22345688899998776554433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.00054  Score=55.67  Aligned_cols=87  Identities=9%  Similarity=-0.007  Sum_probs=55.3

Q ss_pred             CCcceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEc
Q 024436           87 DKTGRLMKYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRS  163 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d  163 (268)
                      ...+.|..+|..+++...... .-...+.++|+|+++.|+ +.+..+.|..|++....  ....+...  ......++++
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~-s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEEC
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeecccc--cccccccccccCceEEEEEC
Confidence            345677788877666544333 344568899999998665 55567899999987421  11222111  1224578899


Q ss_pred             CCCCEEEEEecCC
Q 024436          164 PRGGFWVGIHSRR  176 (268)
Q Consensus       164 ~dG~l~va~~~~~  176 (268)
                      ++|+++++....+
T Consensus       280 ~~~~~l~~g~~dg  292 (340)
T d1tbga_         280 KSGRLLLAGYDDF  292 (340)
T ss_dssp             SSSCEEEEEETTS
T ss_pred             CCCCEEEEEECCC
Confidence            9998777665554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=0.00084  Score=55.59  Aligned_cols=135  Identities=12%  Similarity=0.116  Sum_probs=87.8

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      ....++++|++.++++...++.|..++...........          ..+...++   ......+.+..+|..+++...
T Consensus       143 ~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~---~~~~~d~~v~i~d~~~~~~~~  219 (337)
T d1gxra_         143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL---WTGGLDNTVRSWDLREGRQLQ  219 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE---EEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccceeec
Confidence            45678899999999998899999988875442211110          11222222   123456788888888776555


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ..+.-...+.++++|+++.|++ .+..+.|..|++..+.   ......-.+....+++.++|+++++....+
T Consensus       220 ~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~i~d~~~~~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         220 QHDFTSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEE-EETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccceEEEEEcccccccce-eccccccccccccccc---cccccccccccceEEECCCCCEEEEEeCCC
Confidence            4544455688999999987654 4567899999987532   111111123467889999999777665544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=0.0013  Score=54.21  Aligned_cols=136  Identities=11%  Similarity=0.053  Sum_probs=77.7

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCCCCe--E
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPATKQ--V  102 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~  102 (268)
                      .|..++++|+|+.++... ++.|..++.+. .....+         ...+|+++++.   .+..+|.|..+|..+++  .
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~la---tg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA---SGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE---EEETTSEEEEEESSSTTCCE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEe---ccccCceEeeeeeecccccc
Confidence            566799999999887654 55677776543 211222         12245555543   33456777777776543  2


Q ss_pred             EE-eecCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEecCC
Q 024436          103 TV-LLGNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIHSRR  176 (268)
Q Consensus       103 ~~-~~~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~~~~  176 (268)
                      +. +...-...+.++|+||++.|.++... ...+.+|+++..+.  ...+..-......++++++|.+ +++....+
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccc--cccccccccccccccccccceeeeccccccc
Confidence            22 33333445899999999977666433 23467788774321  1111111123467889998874 55444443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=0.002  Score=51.80  Aligned_cols=140  Identities=18%  Similarity=0.112  Sum_probs=80.1

Q ss_pred             EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEE----------cCCCCCeeEEEeecCCcceEE
Q 024436           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFAR----------TSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      +..+..|....-.+++++|||++++++..||.|..|+.+. +....+..          ..+++.++    .....+.+.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~----~~~~d~~v~   79 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF----TVSWDDHLK   79 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE----EEETTTEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee----cccceeeEE
Confidence            4566667666788999999999999999999999998653 32211100          01111111    112234555


Q ss_pred             EEeCCCCeEE----EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436           94 KYDPATKQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW  169 (268)
Q Consensus        94 ~~d~~~~~~~----~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~  169 (268)
                      .++.......    ........+..++++|||+.++++.  .+.+..|+...     .... .....+..+++.++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~--~~~i~~~~~~~-----~~~~-~~~~~~~~~~~s~~~~~l  151 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC--YKHIAIYSHGK-----LTEV-PISYNSSCVALSNDKQFV  151 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE--SSEEEEEETTE-----EEEE-ECSSCEEEEEECTTSCEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc--ccccccccccc-----cccc-cccccccccccccccccc
Confidence            5554322111    0112234567899999998555443  35777777431     1111 122245678889999866


Q ss_pred             EEEecCC
Q 024436          170 VGIHSRR  176 (268)
Q Consensus       170 va~~~~~  176 (268)
                      +.....+
T Consensus       152 ~~g~~dg  158 (299)
T d1nr0a2         152 AVGGQDS  158 (299)
T ss_dssp             EEEETTS
T ss_pred             ccccccc
Confidence            6554444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=6.4e-05  Score=62.25  Aligned_cols=84  Identities=18%  Similarity=0.030  Sum_probs=60.5

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  167 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~  167 (268)
                      .|.|+.+|.+++++..+. +......++|+|||++|+++.... +.|++|+.+++.   ...+....+....++++|||+
T Consensus        23 ~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~~~~v~~~~~spdg~   98 (360)
T d1k32a3          23 RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRNGK   98 (360)
T ss_dssp             TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECTTSS
T ss_pred             CCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---EEEeeCCCceEEeeeeccccc
Confidence            478999999988777654 445578999999999887765444 578899987632   333322334567899999999


Q ss_pred             EEEEEecCC
Q 024436          168 FWVGIHSRR  176 (268)
Q Consensus       168 l~va~~~~~  176 (268)
                      .+++.....
T Consensus        99 ~l~~~~~~~  107 (360)
T d1k32a3          99 FAVVANDRF  107 (360)
T ss_dssp             EEEEEETTS
T ss_pred             ccceecccc
Confidence            777666554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=0.0011  Score=54.81  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=89.5

Q ss_pred             CCcceEEECC--CCCEEEEEeCCCeEEEEeCCC-C---eEEE-----EE---------EcCCCCCeeEEEeecCCcceEE
Q 024436           34 IGPESLAFDA--LGEGPYTGVSDGRIIKWHQDQ-R---RWLH-----FA---------RTSPNRNHISVILSGDKTGRLM   93 (268)
Q Consensus        34 ~~P~gia~~~--dG~~l~~~~~~g~I~~~~~~g-~---~~~~-----~~---------~~~~~~~~~~~~~~~~~~g~v~   93 (268)
                      ..-..++++|  +|.+++++..||.|..|+... +   ....     +.         ...+++.++... .....+.+.
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~~~~~~~~  142 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV-GEGRDNFGV  142 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE-ECCSSCSEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee-eccccceEE
Confidence            3567899987  577888888999998876421 1   1111     00         011222333222 222334455


Q ss_pred             EEeCCCCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCC-CCE
Q 024436           94 KYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPR-GGF  168 (268)
Q Consensus        94 ~~d~~~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~d-G~l  168 (268)
                      .++.++++. ..+...-..-+.++|+|+++.++++...++.|..|+....+  ........   .+....+++.|+ +.+
T Consensus       143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~  220 (325)
T d1pgua1         143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEF  220 (325)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             EEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeecccccee
Confidence            555555543 33333344558899999998777877788999999875321  11111112   233567889987 467


Q ss_pred             EEEEecCCCcceeeeEee-Cccceeeeeccc
Q 024436          169 WVGIHSRRKGISKLVLSF-PWIGNVLIKLPI  198 (268)
Q Consensus       169 ~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~  198 (268)
                      +++....+.     |..+ ..+++.+..+..
T Consensus       221 l~s~~~d~~-----i~iwd~~~~~~~~~l~~  246 (325)
T d1pgua1         221 VITVGSDRK-----ISCFDGKSGEFLKYIED  246 (325)
T ss_dssp             EEEEETTCC-----EEEEETTTCCEEEECCB
T ss_pred             ccccccccc-----eeeeeeccccccccccc
Confidence            666655543     4444 356666666543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=0.0032  Score=49.84  Aligned_cols=140  Identities=9%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATK  100 (268)
Q Consensus        31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~  100 (268)
                      +.-..-.+++++|+|++++++..||.|..|+.. ++....+..         ..++..++..   ....+.+..++....
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS---CSADMTIKLWDFQGF   91 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEE---EETTSCCCEEETTSS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccc---ccccccccccccccc
Confidence            333457899999999999999999999999864 332222210         1122222211   112233334444333


Q ss_pred             eEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436          101 QVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       101 ~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      +... ..........+.++|+++.++ +-...+.+..|++..+.  ....+..-......++++++|+++++....+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccceeeeccCCCceEE-eeccCcceeEeecccce--eeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence            3322 223344556899999998665 55677899999987432  1222222223456778889888777655444

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=0.005  Score=51.48  Aligned_cols=141  Identities=11%  Similarity=0.085  Sum_probs=83.5

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      ..-.+++++|+|++++++..|+.|..|+.+...+......            .|+.+++. .......-+++.++.....
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~-~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE-EEETTSSEEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccce-eecccCcceeeeeeccccc
Confidence            3569999999999999988899999888765433322211            22223322 2233444567777765433


Q ss_pred             EEE--eecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-------------eeEEEeC---CCCCCceEE
Q 024436          102 VTV--LLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-------------IEIVAQL---PGFPDNIKR  162 (268)
Q Consensus       102 ~~~--~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-------------~~~~~~l---~g~Pdgia~  162 (268)
                      ...  .... -.....++|+||+++| ++.+..+.|..|+........             .......   .+....+++
T Consensus       131 ~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         131 WVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             ccccccccccccccccccccccccce-eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence            221  1222 2234679999999865 566677889999876322110             1111221   133567899


Q ss_pred             cCCCCEEEEEecCC
Q 024436          163 SPRGGFWVGIHSRR  176 (268)
Q Consensus       163 d~dG~l~va~~~~~  176 (268)
                      +++|+.+++....+
T Consensus       210 s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         210 SANGSRVAWVSHDS  223 (371)
T ss_dssp             CSSSSEEEEEETTT
T ss_pred             ecccccccccccCC
Confidence            99998766555443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=0.0085  Score=49.53  Aligned_cols=135  Identities=20%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVL  105 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  105 (268)
                      -.+++++|+|++++++..+|.|..++...........          ..+....+   ......+.+..+|..+......
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL---VSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE---EEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccc---cccccceeeeeeeccccccccc
Confidence            4579999999999999999999988865432221110          01111111   2334567788888886665555


Q ss_pred             ecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe----CC---CCCCceEEcCCCCEEEEEecCC
Q 024436          106 LGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----LP---GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       106 ~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~----l~---g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      .........+++.+ |++ ++++.+..+.|..|+......  ...+..    ..   +....++++++|+++++....+
T Consensus       201 ~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         201 LSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             EECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccCCCCC-eEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            54445556666665 665 555666778899999874321  111111    11   2245688999998766655443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.0048  Score=51.14  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP  112 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  112 (268)
                      ..-.+++|+|||++++++. |+.|..|+.. ++....+...              . ..  ..++..............-
T Consensus        63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~--------------~-~~--~~~~~~~~~~~~~~~~~~V  124 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD--------------S-AA--NKDPENLNTSSSPSSDLYI  124 (388)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------------------CCCCBE
T ss_pred             CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccc--------------c-cc--cccccccccccccCCCCCE
Confidence            3568899999999888875 7888888864 3332222100              0 00  0000000000111122334


Q ss_pred             ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEEEecC
Q 024436          113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va~~~~  175 (268)
                      +.|+|+|||++|+ +.+..+.|..|+...+.   ....... ......+++.+++...+.....
T Consensus       125 ~~l~~s~~~~~l~-s~~~dg~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         125 RSVCFSPDGKFLA-TGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEECTTSSEEE-EEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCcce-ecccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            6799999998665 55567889999986421   1111111 1234466777777655544443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.0036  Score=49.50  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE---------EcCCCCC-----------------eeEEEeec
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFA---------RTSPNRN-----------------HISVILSG   86 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~---------~~~~~~~-----------------~~~~~~~~   86 (268)
                      .....+++++++++++++..++.|..++..... ...+.         ...+...                 ....+...
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            467889999999999999999999888765332 11111         0011100                 00012233


Q ss_pred             CCcceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           87 DKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ..++.|..+|..+++... +...-.....++++|++++|+ +-...+.|..|++..++.  ...+..-.+....+++.++
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~~s~~  300 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKT  300 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSS
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEE-EEECCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEcCC
Confidence            456788888888776543 333344557899999998654 555778999999875321  2333221233567899999


Q ss_pred             CCEEEEEecC
Q 024436          166 GGFWVGIHSR  175 (268)
Q Consensus       166 G~l~va~~~~  175 (268)
                      |+++++....
T Consensus       301 ~~~l~s~s~D  310 (317)
T d1vyhc1         301 APYVVTGSVD  310 (317)
T ss_dssp             SSCEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            9866655444

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0002  Score=62.36  Aligned_cols=89  Identities=10%  Similarity=0.042  Sum_probs=53.8

Q ss_pred             EEEecCCCCCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436           26 VQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTV  104 (268)
Q Consensus        26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  104 (268)
                      +.+.+|..++++|+...++++..|+-.+ ...+ -+..+|+.+             .+  ...-.+.+..+|.++.++..
T Consensus       124 kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~v-P~pndg~~l-------------~d--~~~y~~~~t~ID~~tm~V~~  187 (459)
T d1fwxa2         124 AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-PLVNDGTNM-------------ED--VANYVNVFTAVDADKWEVAW  187 (459)
T ss_dssp             EEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-ESSCSSSST-------------TC--GG-EEEEEEEEETTTTEEEE
T ss_pred             EEEecCCCCCCceeecccCCCeEEEEccCcccc-ccCCCCccc-------------cc--hhhcceEEEEEecCCceEEE
Confidence            3445666668999998887776665432 2222 122333310             00  00122456688998877654


Q ss_pred             eecCCCCcceEEEccCCCEEEEEecC
Q 024436          105 LLGNLSFPNGVALSEDGNYILLAETT  130 (268)
Q Consensus       105 ~~~~~~~pnGia~spdg~~lyva~~~  130 (268)
                      ...-...|.++++++||+++|++...
T Consensus       188 QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         188 QVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EeeeCCChhccccCCCCCEEEEEecc
Confidence            43333468899999999999998643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=0.0012  Score=53.03  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      .+..++++|++++++++..++.|..++..+........           ..++..++.   ....++.|..+|..++...
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV---ATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE---EEETTSCEEEEEGGGTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc
Confidence            67889999999999999999999988865543222111           122333332   2345677888887654332


Q ss_pred             Eeec----CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436          104 VLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus       104 ~~~~----~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      ....    .....+.++|+|+|++|+ +.+.++.|..|++...
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~~l~-sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNVRLA-TGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTCT
T ss_pred             cccccccccccccccccccccccceE-EEcCCCEEEEEECCCC
Confidence            2221    223457899999998665 5556789999998753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.0037  Score=52.82  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE---------------EcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA---------------RTSPNRNHISVILSGDKTGRLMKYDPA   98 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~---------------~~~~~~~~~~~~~~~~~~g~v~~~d~~   98 (268)
                      ...+++++||| +++++..|+.|..|+.... ....+.               ..+|++.++..-..+...+.|..+|.+
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence            46789999998 5788899999999987533 222111               112333443322222223456677887


Q ss_pred             CCeEEEeec--------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436           99 TKQVTVLLG--------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  142 (268)
Q Consensus        99 ~~~~~~~~~--------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~  142 (268)
                      +++......              +-..-+.++|+|||++| ++-+..+.|..|+++.+
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTT
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCCC
Confidence            765433221              12234679999999854 67788899999999753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.42  E-value=0.0015  Score=57.52  Aligned_cols=70  Identities=23%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---------CCCCceEEcCC----C
Q 024436          100 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---------GFPDNIKRSPR----G  166 (268)
Q Consensus       100 ~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---------g~Pdgia~d~d----G  166 (268)
                      -+++++++++..|-+|+|.|||+ |||++...++|++++.+++   ..+.+..++         +.--||++||+    +
T Consensus        17 f~~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g---~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~   92 (450)
T d1crua_          17 FDKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (450)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             cEEEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCC---cEeecccCCccccccCCCCceeeEEeCCCCccCC
Confidence            46788899999999999999996 9999988899999987653   234444432         12236999885    6


Q ss_pred             CEEEEEe
Q 024436          167 GFWVGIH  173 (268)
Q Consensus       167 ~l~va~~  173 (268)
                      .+|++..
T Consensus        93 ~iYvsyt   99 (450)
T d1crua_          93 YIYISGT   99 (450)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6888653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.36  E-value=0.002  Score=52.06  Aligned_cols=110  Identities=12%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEE-----------cCCCCCeeEEEeecCCcce
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFAR-----------TSPNRNHISVILSGDKTGR   91 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~-----------~~~~~~~~~~~~~~~~~g~   91 (268)
                      .+..+.-. -....+++++|+|++++++..++.|..++....... .+..           ..+++.++   +.+..+|.
T Consensus       218 ~~~~~~~h-~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~g~~dg~  293 (340)
T d1tbga_         218 CRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL---LAGYDDFN  293 (340)
T ss_dssp             EEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE---EEEETTSC
T ss_pred             EEEEEeCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE---EEEECCCE
Confidence            34444432 235689999999999999999999998887644221 1111           11222222   23345688


Q ss_pred             EEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436           92 LMKYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYW  138 (268)
Q Consensus        92 v~~~d~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~  138 (268)
                      |..+|..+++...... +...-+.++|+||+++| ++-+..+.|..|+
T Consensus       294 i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence            8899987776544443 34455899999999866 4556678888774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.33  E-value=0.0026  Score=55.23  Aligned_cols=88  Identities=11%  Similarity=0.020  Sum_probs=62.5

Q ss_pred             EeecCCcceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcE-------------------EEEEEccC
Q 024436           83 ILSGDKTGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCR-------------------ILRYWLKT  141 (268)
Q Consensus        83 ~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~-------------------I~~~~~~~  141 (268)
                      +..+..+.+|.++|.++-+...+.  .....+.|+...+++++.||.+....+                   +..+|.+.
T Consensus       103 FVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~t  182 (459)
T d1fwxa2         103 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK  182 (459)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTT
T ss_pred             EEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCC
Confidence            346678899999999988876643  556778899999999999998754433                   45566542


Q ss_pred             CCCCceeEEEe--CCCCCCceEEcCCCC-EEEEEecC
Q 024436          142 SKAGTIEIVAQ--LPGFPDNIKRSPRGG-FWVGIHSR  175 (268)
Q Consensus       142 ~~~g~~~~~~~--l~g~Pdgia~d~dG~-l~va~~~~  175 (268)
                           .++..+  .++.|+++.++++|+ +|+++...
T Consensus       183 -----m~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS  214 (459)
T d1fwxa2         183 -----WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS  214 (459)
T ss_dssp             -----TEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             -----ceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence                 122222  457899999999998 56666543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.072  Score=43.19  Aligned_cols=104  Identities=14%  Similarity=0.079  Sum_probs=62.2

Q ss_pred             cceEEECCCCCEEEEEeC--CCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436           36 PESLAFDALGEGPYTGVS--DGRIIKWHQD-QRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT  103 (268)
Q Consensus        36 P~gia~~~dG~~l~~~~~--~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  103 (268)
                      -..++++++|+.+.+...  ++.+..++.+ ++....+.         ...+.+++...  ....++.+..+|..+.+..
T Consensus       118 v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~--~~~~d~~v~~~d~~~~~~~  195 (325)
T d1pgua1         118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM--TVGDDGSVVFYQGPPFKFS  195 (325)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE--EEETTTEEEEEETTTBEEE
T ss_pred             EEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE--Eeecccccccccccccccc
Confidence            468999999998776543  4455555543 22221111         11233333222  2334577878887655544


Q ss_pred             Eeec----CCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          104 VLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       104 ~~~~----~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ....    .......++|+||+..++++-+..+.|..|++..
T Consensus       196 ~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             eecccccCCCCccEEeeeccccceeccccccccceeeeeecc
Confidence            3322    2234578999998655777777889999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.83  E-value=0.0066  Score=48.03  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=53.5

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec-CC----cEEEEEEccCCCCCceeEEEeC------C-CC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET-TS----CRILRYWLKTSKAGTIEIVAQL------P-GF  156 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~-~~----~~I~~~~~~~~~~g~~~~~~~l------~-g~  156 (268)
                      .+.||.+|.++++.+++........+.+|||||++|+++.. ..    ..|++++.+++.   ...+...      + ..
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~---~~~lt~~~~~~~~~~~~   96 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMF   96 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEEC
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc---eEEeeecCCCccCcccc
Confidence            35799999988888888777666788999999998877632 21    358888887642   2222111      1 23


Q ss_pred             CCceEEcCCCCEEE
Q 024436          157 PDNIKRSPRGGFWV  170 (268)
Q Consensus       157 Pdgia~d~dG~l~v  170 (268)
                      ....++.+||+.++
T Consensus        97 ~~~~~~spdg~~l~  110 (281)
T d1k32a2          97 TDVAGFDPDGNLII  110 (281)
T ss_dssp             SEEEEECTTCCEEE
T ss_pred             ccccccCCCCCEEE
Confidence            56778888987433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.099  Score=40.99  Aligned_cols=104  Identities=14%  Similarity=-0.008  Sum_probs=59.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCC--CeEEEEE--Ec---------CCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ--RRWLHFA--RT---------SPNRNHISVILSGDKTGRLMKYDPATKQ  101 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g--~~~~~~~--~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~  101 (268)
                      .-.+|+|+|+|++++++..||.|..|+.+.  .......  ..         .++...  .+..+..++.|..++..++.
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~--~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL--QIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE--EEEEEETTSCEEEECSSSSS
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC--EEEEcccccceeeeeccccc
Confidence            458999999999999999999998887532  2111111  11         011111  12233455677777766443


Q ss_pred             EEEeecC-CCCc-ceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          102 VTVLLGN-LSFP-NGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       102 ~~~~~~~-~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      ....... .... ......+++. .+++....+.+..|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          91 SFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHH
T ss_pred             ccccccccccccccccccccccc-cccccccccccceeeccc
Confidence            3332222 2222 2344555555 556777788999998763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.57  E-value=0.16  Score=42.47  Aligned_cols=132  Identities=10%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC---------------CeeEEEeecCC----cceEEEEeCCCCeE
Q 024436           42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR---------------NHISVILSGDK----TGRLMKYDPATKQV  102 (268)
Q Consensus        42 ~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~~~~~----~g~v~~~d~~~~~~  102 (268)
                      +|+..+++....++-|+.++.+|+.+..+   ..++               .......+.+.    .-.+|.+++..+.+
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEGKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTCCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCCCcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            55677666666666688888888753322   1111               01111223222    22468888876666


Q ss_pred             EEee-------cCCCCcceEEE--ccCCCEEE-EEecCCcEEEEEEccCCCCCc--eeEEE--eCCCCCCceEEcCC-CC
Q 024436          103 TVLL-------GNLSFPNGVAL--SEDGNYIL-LAETTSCRILRYWLKTSKAGT--IEIVA--QLPGFPDNIKRSPR-GG  167 (268)
Q Consensus       103 ~~~~-------~~~~~pnGia~--spdg~~ly-va~~~~~~I~~~~~~~~~~g~--~~~~~--~l~g~Pdgia~d~d-G~  167 (268)
                      ..+.       ..+..+.|+|+  +++...+| +.....+++..|.+.....+.  ...+.  .++..+.|+++|.+ +.
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS  193 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence            5442       23345789999  66543233 333356788887764211111  12222  25667999999987 57


Q ss_pred             EEEEEecCC
Q 024436          168 FWVGIHSRR  176 (268)
Q Consensus       168 l~va~~~~~  176 (268)
                      ||++....+
T Consensus       194 LyisEE~~G  202 (353)
T d1h6la_         194 LYIAEEDEA  202 (353)
T ss_dssp             EEEEETTTE
T ss_pred             EEEecCccc
Confidence            999988664

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.22  Score=39.25  Aligned_cols=127  Identities=12%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeec-
Q 024436           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLG-  107 (268)
Q Consensus        39 ia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-  107 (268)
                      ....+++++++++..++.|..++....... ....         ..+..+++.   ....++.|..+|..+++...... 
T Consensus       165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI---SASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE---EEETTSCEEEEETTTCCEEEEECC
T ss_pred             cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeee---cccccceEEeeecccccccccccc
Confidence            355667888888888999988876543211 1110         011222221   22345678888887766544433 


Q ss_pred             CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc-eEEcCCCCEEEEEecC
Q 024436          108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN-IKRSPRGGFWVGIHSR  175 (268)
Q Consensus       108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg-ia~d~dG~l~va~~~~  175 (268)
                      .-..-+.+++++  ++| ++.+..+.|..|++....   ...-.... .... .++.++++++++...+
T Consensus       242 h~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~---~~~~~~~~-~~~~~~~~~~~~~~l~~g~d~  303 (355)
T d1nexb2         242 HTALVGLLRLSD--KFL-VSAAADGSIRGWDANDYS---RKFSYHHT-NLSAITTFYVSDNILVSGSEN  303 (355)
T ss_dssp             CSSCCCEEEECS--SEE-EEECTTSEEEEEETTTCC---EEEEEECT-TCCCCCEEEECSSEEEEEETT
T ss_pred             cccccccccccc--cee-eeeecccccccccccccc---eecccccC-CceEEEEEcCCCCEEEEEeCC
Confidence            333346777764  455 555678999999987421   11111221 2223 3556678888776544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.11  E-value=0.034  Score=47.69  Aligned_cols=132  Identities=17%  Similarity=0.076  Sum_probs=79.5

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------------EcCCCCCeeEEEee------cCCcceEE
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------------RTSPNRNHISVILS------GDKTGRLM   93 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~------~~~~g~v~   93 (268)
                      .+..+...+|++++|.  +++.++.++..+..-..+.               ..+|++.++.-...      ....+.++
T Consensus        18 ~~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          18 KLYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            3455677888886664  5778888887654322221               12455554432111      12346788


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCce-------eEEEe---------CCCCC
Q 024436           94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI-------EIVAQ---------LPGFP  157 (268)
Q Consensus        94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~-------~~~~~---------l~g~P  157 (268)
                      .+|.+++++..+...-.....+.|||||+.|.+.  .++.++.++..++..-..       ..+..         ..+..
T Consensus        96 l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            9999988877666555556678999999977665  346788888775421000       01110         11345


Q ss_pred             CceEEcCCCCEEE
Q 024436          158 DNIKRSPRGGFWV  170 (268)
Q Consensus       158 dgia~d~dG~l~v  170 (268)
                      .++.+.|||+.++
T Consensus       174 ~~~~wSPDGk~ia  186 (470)
T d2bgra1         174 SALWWSPNGTFLA  186 (470)
T ss_dssp             BCEEECTTSSEEE
T ss_pred             cccEECCCCCccc
Confidence            6788999997443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.95  E-value=0.24  Score=38.27  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             cCCCCCeeEEEe-ec--CCcceEEEEeCCCCeEEEeecC-------CCCcceEEEccCCCEEEEEecCC-----cEEEEE
Q 024436           73 TSPNRNHISVIL-SG--DKTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTS-----CRILRY  137 (268)
Q Consensus        73 ~~~~~~~~~~~~-~~--~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGia~spdg~~lyva~~~~-----~~I~~~  137 (268)
                      .+|++.++.-.. ..  .....||.++..+++.+.+...       ......++++|||+.|+++....     ..+...
T Consensus        48 ~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  127 (281)
T d1k32a2          48 FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV  127 (281)
T ss_dssp             ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred             ECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeee
Confidence            456665443211 11  1235799999998888776422       12446789999999999875533     245555


Q ss_pred             EccC
Q 024436          138 WLKT  141 (268)
Q Consensus       138 ~~~~  141 (268)
                      +.++
T Consensus       128 ~~~~  131 (281)
T d1k32a2         128 ENDG  131 (281)
T ss_dssp             EGGG
T ss_pred             cCCC
Confidence            5543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.082  Score=41.44  Aligned_cols=100  Identities=12%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE------------EEEcCCCC----------CeeEEEeecCCcce
Q 024436           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH------------FARTSPNR----------NHISVILSGDKTGR   91 (268)
Q Consensus        34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~------------~~~~~~~~----------~~~~~~~~~~~~g~   91 (268)
                      .....++++|+|++++++..+|.|..++........            ++ ..|..          .++   .++..++.
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~~~~l---~sgs~D~~  238 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS-WKPAEKGANEEEIEEDLV---ATGSLDTN  238 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE-ECCCC------CCSCCEE---EEEETTSC
T ss_pred             CceeEEEeccCccccccccccccccceeecccccccccccccccccceee-ecccccccccccCCCCee---EeecCCCe
Confidence            357889999999999999999999999875432111            11 01111          122   23345567


Q ss_pred             EEEEeCCC-Ce-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc
Q 024436           92 LMKYDPAT-KQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  139 (268)
Q Consensus        92 v~~~d~~~-~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~  139 (268)
                      |+.+|.++ ++ ++.+......-++++|+||+ .| ++-...+.|..|++
T Consensus       239 i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL-VSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EE-EEEETTSCEEEEEE
T ss_pred             EEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EE-EEEECCCeEEEEEE
Confidence            77777653 33 33333344556899999987 45 45556788888875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.38  Score=37.04  Aligned_cols=78  Identities=19%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436           91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  168 (268)
Q Consensus        91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l  168 (268)
                      .||.+|.+++..+.+.++...-...+|||||+.|.++.....  .++.++.++.   ..+.+....+......++++|..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---ceeEEeeeecccccceecCCCCe
Confidence            688888886666666555443346799999999976644333  5777776653   23334333455667788899975


Q ss_pred             EEE
Q 024436          169 WVG  171 (268)
Q Consensus       169 ~va  171 (268)
                      ++.
T Consensus        97 i~~   99 (269)
T d2hqsa1          97 LAF   99 (269)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.33  E-value=0.039  Score=47.35  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             cceEEEEeCCCCeEEEeecCC------CCcceEEEccCCCEEEEEe--------cCCcEEEEEEccCCCCCceeEEEeCC
Q 024436           89 TGRLMKYDPATKQVTVLLGNL------SFPNGVALSEDGNYILLAE--------TTSCRILRYWLKTSKAGTIEIVAQLP  154 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~------~~pnGia~spdg~~lyva~--------~~~~~I~~~~~~~~~~g~~~~~~~l~  154 (268)
                      .+.++.+|..+++.+++.+..      .....+.|||||++|.++.        +..+.++.|+++++.   ...+...+
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~  111 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIP  111 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCC
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCC
Confidence            467999999998877766443      2346899999999887653        223577889987632   11111122


Q ss_pred             CCCCceEEcCCCCEEEE
Q 024436          155 GFPDNIKRSPRGGFWVG  171 (268)
Q Consensus       155 g~Pdgia~d~dG~l~va  171 (268)
                      .......+.|||+.++-
T Consensus       112 ~~~~~~~~SPDG~~ia~  128 (470)
T d2bgra1         112 NNTQWVTWSPVGHKLAY  128 (470)
T ss_dssp             TTEEEEEECSSTTCEEE
T ss_pred             ccccccccccCcceeeE
Confidence            23345677888874443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.48  Score=36.41  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  165 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d  165 (268)
                      ....++.++.+++....+...........++|||+.++......+  .|++++.+++   ..... ...+.-...+++||
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~-~~~~~~~~p~~SPD  224 (269)
T d2hqsa1         149 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVL-SSTFLDETPSLAPN  224 (269)
T ss_dssp             SSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEEC-CCSSSCEEEEECTT
T ss_pred             CCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccc---cceEe-ecCccccceEECCC
Confidence            445788888887666555554444556789999998877655443  5666665432   12221 12222335589999


Q ss_pred             CC
Q 024436          166 GG  167 (268)
Q Consensus       166 G~  167 (268)
                      |+
T Consensus       225 G~  226 (269)
T d2hqsa1         225 GT  226 (269)
T ss_dssp             SS
T ss_pred             CC
Confidence            97

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.19  Score=41.60  Aligned_cols=105  Identities=13%  Similarity=0.073  Sum_probs=62.1

Q ss_pred             ecCCcceEEEEeCCCCeEEEee-------cCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEe---
Q 024436           85 SGDKTGRLMKYDPATKQVTVLL-------GNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQ---  152 (268)
Q Consensus        85 ~~~~~g~v~~~d~~~~~~~~~~-------~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~---  152 (268)
                      .+..++.|..+|..+++.....       .+-..-+.++|+|||++|+.+....  ..|..|+++.+..  ...+..   
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~--~~~l~~~~~  277 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTH  277 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--
T ss_pred             EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee--eeeeccccc
Confidence            4456788888998877643322       1223457899999999776553222  3578888874321  111110   


Q ss_pred             -------CCC---CCCceEEcCCCCEEEEEecCCCcceeeeEee-Cccceeeeec
Q 024436          153 -------LPG---FPDNIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKL  196 (268)
Q Consensus       153 -------l~g---~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i  196 (268)
                             +.|   .-..+++.|||+++++....+.     |... ...|+.+..+
T Consensus       278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-----v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-----LRFWDVKTKERITTL  327 (393)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSE-----EEEEETTTTEEEEEE
T ss_pred             cccceeeeecccCceeeeccCCCCCeeEEECCCCE-----EEEEECCCCCEEEEE
Confidence                   001   2345899999998877765543     3333 3567766554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.54  Score=36.39  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--CCCceEEcCCCCEEEEEecC
Q 024436          112 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FPDNIKRSPRGGFWVGIHSR  175 (268)
Q Consensus       112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--~Pdgia~d~dG~l~va~~~~  175 (268)
                      -+.|+|+|++++| ++-...+.|..|+++..     +.+..++.  ...-+++.++|++++.....
T Consensus       254 v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~-----~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         254 VNSIEFSPRHKFL-YTAGSDGIISCWNLQTR-----KKIKNFAKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             EEEEEECTTTCCE-EEEETTSCEEEEETTTT-----EEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             ceeEEecCCccEE-EEECCCCEEEEEECCCC-----cEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence            4689999999855 56667899999998742     23333321  12247888888865544433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.67  Score=35.96  Aligned_cols=136  Identities=16%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEc-------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFART-------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLL  106 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~-------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  106 (268)
                      ........+++..++++..+|.|..++..... ...+...       ....+++   .....++.|..+|..+.+.....
T Consensus       177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l---~s~s~d~~i~iwd~~~~~~~~~~  253 (342)
T d2ovrb2         177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL---VSGNADSTVKIWDIKTGQCLQTL  253 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEE---EEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEE---EEEcCCCEEEEEecccccccccc
Confidence            35566777889989999999999999875432 2221100       0111222   23345678888887765554433


Q ss_pred             cCC-C-CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-----CCCCceEEcCCCCEEEEEecCC
Q 024436          107 GNL-S-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-----GFPDNIKRSPRGGFWVGIHSRR  176 (268)
Q Consensus       107 ~~~-~-~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-----g~Pdgia~d~dG~l~va~~~~~  176 (268)
                      ... . ...-.+++++++.+ ++-+..+.|..|++..++.  ...+....     +....++++++|.++++....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~-~s~s~Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         254 QGPNKHQSAVTCLQFNKNFV-ITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             CSTTSCSSCEEEEEECSSEE-EEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccceeeeceeecccCCCee-EEEcCCCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            322 1 12234455566644 5666789999999875321  22332211     1234678888887666554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.87  Score=39.04  Aligned_cols=51  Identities=10%  Similarity=-0.080  Sum_probs=32.7

Q ss_pred             cceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436           89 TGRLMKYDPATKQVTVLLGNLSFP---NGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus        89 ~g~v~~~d~~~~~~~~~~~~~~~p---nGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      .+.++.+|..+++.+.+......+   .-..|||||+.|.+..  .+.|+..+..+
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~  143 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVG  143 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSS
T ss_pred             cccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCC
Confidence            467888888888776664322222   2367899998775443  35677776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.51  E-value=2.2  Score=32.52  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEc------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEee-
Q 024436           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFART------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLL-  106 (268)
Q Consensus        35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-  106 (268)
                      .|..+++.+++.++++ ..++.+..++.. ++....+...      .+....+.  ......+.+..++..+.+..... 
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2          82 QPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA--VGLEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             CEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE--EEETTTSCEEEEETTEEEEEEECS
T ss_pred             ceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccceeeeeeccCccee--eeccccceeeeeeccccceeeeee
Confidence            6788888888875544 455566666543 3322222111      11111111  12222334556665422222221 


Q ss_pred             c-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436          107 G-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  141 (268)
Q Consensus       107 ~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~  141 (268)
                      . .......++|+|||++|+++. ..++|..|++..
T Consensus       159 ~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~  193 (287)
T d1pgua2         159 TPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQS  193 (287)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             eccCCceeEEEeccCcccccccc-ccccccceeecc
Confidence            1 223457899999999776554 678899999874

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.11  E-value=1  Score=37.35  Aligned_cols=90  Identities=17%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV  102 (268)
Q Consensus        23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  102 (268)
                      +-++.+.++.  ++||.++|.+.+.+|++.++..|++++.+-..                    ...+.+. ...+.+. 
T Consensus       171 ~lvr~f~~~~--q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~--------------------~~~~~~i-~~~~g~~-  226 (353)
T d1h6la_         171 KKVRAFKMNS--QTEGMAADDEYGSLYIAEEDEAIWKFSAEPDG--------------------GSNGTVI-DRADGRH-  226 (353)
T ss_dssp             EEEEEEECSS--CEEEEEEETTTTEEEEEETTTEEEEEESSTTS--------------------CSCCEEE-EECSSSS-
T ss_pred             EeeeccCCCC--ccceEEEeCCCCcEEEecCccceEEEEeccCC--------------------Cccceee-ecccCcc-
Confidence            3556666665  78888888887778888877788877644210                    0001111 0011011 


Q ss_pred             EEeecCCCCcceEEEcc--CCC-EEEEEecCCcEEEEEEccC
Q 024436          103 TVLLGNLSFPNGVALSE--DGN-YILLAETTSCRILRYWLKT  141 (268)
Q Consensus       103 ~~~~~~~~~pnGia~sp--dg~-~lyva~~~~~~I~~~~~~~  141 (268)
                           -..-|.||++-.  +++ +|++|+...++..+|+..+
T Consensus       227 -----l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         227 -----LTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             -----CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             -----ccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence                 113467888653  333 9999999999999999875

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=90.03  E-value=3  Score=31.52  Aligned_cols=56  Identities=7%  Similarity=-0.085  Sum_probs=35.6

Q ss_pred             eEEEccCCCEEEEEecCCcEEEEEEc-cCC---CCCceeEEEe-CCCCCCceEEcCCCCEEEEE
Q 024436          114 GVALSEDGNYILLAETTSCRILRYWL-KTS---KAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  172 (268)
Q Consensus       114 Gia~spdg~~lyva~~~~~~I~~~~~-~~~---~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~  172 (268)
                      -|-|+|+|. ||.....  ++++... .+.   -+...+.+.+ .-..+..|.+.+||+||-..
T Consensus       138 ~lFFdP~G~-LYaV~~~--~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         138 FLFFHPNGY-LYAVHGQ--QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEEECTTSC-EEEEETT--EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             EEEECCCce-EEEEECC--cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            488999994 9987543  4666543 221   1222344443 22357899999999998874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.69  E-value=3.7  Score=34.21  Aligned_cols=84  Identities=11%  Similarity=0.005  Sum_probs=48.6

Q ss_pred             CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC---------------CcEEEEEEccCCCCCceeEEE
Q 024436           87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT---------------SCRILRYWLKTSKAGTIEIVA  151 (268)
Q Consensus        87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~---------------~~~I~~~~~~~~~~g~~~~~~  151 (268)
                      ...-.|+.+|.++|+.....-......+++|++|++.||.+...               ..+|++..+.........++.
T Consensus       148 ~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~  227 (430)
T d1qfma1         148 SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (430)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             CchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccc
Confidence            34457888999988754321111223579999999988876422               247888887643322233332


Q ss_pred             eC--CCCCCceEEcCCCCEEE
Q 024436          152 QL--PGFPDNIKRSPRGGFWV  170 (268)
Q Consensus       152 ~l--~g~Pdgia~d~dG~l~v  170 (268)
                      ..  +..--++.+..+|+.++
T Consensus       228 e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         228 FPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             CTTCTTCEEEEEECTTSCEEE
T ss_pred             cccCCceEEeeeccCCcceee
Confidence            21  12223456778887544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.74  E-value=4  Score=31.27  Aligned_cols=228  Identities=12%  Similarity=0.095  Sum_probs=105.8

Q ss_pred             CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEeecCCcceEEE
Q 024436           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR---------NHISVILSGDKTGRLMK   94 (268)
Q Consensus        24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~g~v~~   94 (268)
                      .+.++.-. -..-.++++.+++ .++++..|+.|..++................         +....+.....++.|..
T Consensus        45 ~~~~l~~H-~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          45 FLLQLSGH-DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEEEEECC-SSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             EEEEEECC-CCCEEEEEEcCCC-EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEE
Confidence            45555432 2457889998865 5888889999988887654221111100000         00111222334566666


Q ss_pred             EeCCCCeEEEee-----------cCC-----------CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe
Q 024436           95 YDPATKQVTVLL-----------GNL-----------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  152 (268)
Q Consensus        95 ~d~~~~~~~~~~-----------~~~-----------~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~  152 (268)
                      +|..+++.....           ...           ....-....++++.++ +....+.|..|++....  .......
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~d~~i~~~d~~~~~--~~~~~~~  199 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV-SGSYDNTLIVWDVAQMK--CLYILSG  199 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEE-EEETTSCEEEEETTTTE--EEEEECC
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceee-eecccceeeeeeccccc--ceeeeec
Confidence            666543221110           000           0111235567777554 55566888999886421  1111111


Q ss_pred             CCCCCCceEEcCCCCEEEEEecCCCcceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEE
Q 024436          153 LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE  231 (268)
Q Consensus       153 l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  231 (268)
                      .......+.++++++.++.....+.     +..+ ...++.+..+......+.++.  .++.  .++.-..||.+ ..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~-----i~i~d~~~~~~~~~~~~h~~~v~~~~--~~~~--~l~~~~~dg~i-~iwd  269 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTT-----IRIWDLENGELMYTLQGHTALVGLLR--LSDK--FLVSAAADGSI-RGWD  269 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSC-----EEEEETTTCCEEEEECCCSSCCCEEE--ECSS--EEEEECTTSEE-EEEE
T ss_pred             cccccccccccccceeeecccccce-----EEeeeccccccccccccccccccccc--cccc--eeeeeeccccc-cccc
Confidence            2223456778888876665555442     3333 234555544432222222221  1122  23333444432 2222


Q ss_pred             cCCCCc--------eeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436          232 EIGRKM--------WRSISEVEEKDGNLWIGSVNMPYAGLYNYSS  268 (268)
Q Consensus       232 ~~~g~~--------~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~  268 (268)
                      -.++..        ...+ .+...++++++++. ++.|.+.++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~-d~~i~vwd~~t  312 (355)
T d1nexb2         270 ANDYSRKFSYHHTNLSAI-TTFYVSDNILVSGS-ENQFNIYNLRS  312 (355)
T ss_dssp             TTTCCEEEEEECTTCCCC-CEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             ccccceecccccCCceEE-EEEcCCCCEEEEEe-CCEEEEEECCC
Confidence            222111        1111 23345667666654 56888887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.30  E-value=0.94  Score=38.81  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             CcceEEEEeCCCCeEEEeecCCC----CcceEEEccCCCEEEEEe--------cCCcEEEEEEccCC
Q 024436           88 KTGRLMKYDPATKQVTVLLGNLS----FPNGVALSEDGNYILLAE--------TTSCRILRYWLKTS  142 (268)
Q Consensus        88 ~~g~v~~~d~~~~~~~~~~~~~~----~pnGia~spdg~~lyva~--------~~~~~I~~~~~~~~  142 (268)
                      ..|.|+.+|..+++.+.+...-.    .+....+||||++|+++.        +..+.++.|++..+
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            44567777777666555543321    345778999999987753        23457888888753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=80.57  E-value=14  Score=31.85  Aligned_cols=37  Identities=16%  Similarity=0.089  Sum_probs=24.3

Q ss_pred             EEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436          215 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWI  253 (268)
Q Consensus       215 ~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv  253 (268)
                      +.+.++|. +|+.+..++.+.+ ....+.+- ..+|+.||
T Consensus       498 g~l~A~Da~TGe~LW~~~~~~~-~~~~P~ty-~~~GkQYv  535 (573)
T d1kb0a2         498 GRLVAYHAATGEKLWEAPTGTG-VVAAPSTY-MVDGRQYV  535 (573)
T ss_dssp             SEEEEEETTTCCEEEEEECSSC-CCSCCEEE-EETTEEEE
T ss_pred             CeEEEEECCCCcEeEEEECCCC-ccccCEEE-EECCEEEE
Confidence            56788888 4999999987654 22333332 36788776