Citrus Sinensis ID: 024452

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHcccccccccccccEEEEEccccccccEEEEEEcccccccccEEEEEEcccccccEEcHHHHHHHHHHHHHccccccEEEEEccEEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHEEEEccccccHHHHHHHHHHHHHHcccccccHccEEEEEEccccccEEEEEEccccccccccEEEEEEEccccEEEEcHHHHHHHHHHHHHcccccEEEEEccccEEEEEEccccccHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccccEEEEcccHccccEEEEccccEEEEEEEEEccccccHEcHHHHHHHHHcccccccccccccEEEEHHHcc
Coil and Loop (DISEMBL)
maikttellpssspeELKKVLQSVASdwgdviddsdalqviplkgamtneVYQIawpaknnglaRNVLVRIYGEgvevffnrddeirtfecmssqgqgprllgrfgdgrvEEFIHARtlsaadirdpKISELVAAKMREfhdlkmpgprkALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEkelpndhqeigfchndlqygnimideetssITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Flexible Loop (DISEMBL)
maikttellpssspeELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAwpaknnglARNVLVRIYGEGVEVFFNRDDEIRTfecmssqgqgprLLGRFGDGRVEEFIHartlsaadirdpKISELVAAKMrefhdlkmpgprKALLWDRLRKWVSVAKsfcsakdakEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILtfsvnspmVCMRWLRILCLQL
Low Complexity Region (SEG)
MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Disordered region (IsUnstruct)
*********************QSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCL**
Disordered Region (DISOPRED)
*************PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Disordered Region (DISEMBL)
MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Disordered Region (DISPRO)
*AIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCLQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
O55229	394	Choline/ethanolamine kina	yes	no	0.752	0.510	0.280	8e-20
O54783	394	Choline/ethanolamine kina	yes	no	0.752	0.510	0.280	2e-19
Q9Y259	395	Choline/ethanolamine kina	yes	no	0.752	0.508	0.270	2e-19
Q10276	456	Putative choline kinase O	yes	no	0.651	0.381	0.309	1e-18
A7MCT6	385	Ethanolamine kinase 2 OS=	no	no	0.588	0.407	0.289	4e-17
D3ZRW8	385	Ethanolamine kinase 2 OS=	no	no	0.588	0.407	0.295	4e-17
Q9NVF9	386	Ethanolamine kinase 2 OS=	no	no	0.588	0.406	0.276	2e-15
O54804	453	Choline kinase alpha OS=M	no	no	0.775	0.456	0.276	2e-15
Q869T9	349	Probable ethanolamine kin	yes	no	0.681	0.521	0.261	3e-15
Q01134	453	Choline kinase alpha OS=R	no	no	0.775	0.456	0.276	4e-15

>sp|O55229|CHKB_MOUSE Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3

 Score = 97.8 bits (242), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 36  DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  +
Sbjct: 67  EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++  
Sbjct: 127 AERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPR 186

Query: 152 LLWDRLRKWVSVAKSFCSAK--DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+  + +++   +   S          +Y+LKDE++ L K L +    + FCHND+Q G
Sbjct: 187 WLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLLDDTPSPVVFCHNDIQEG 246

Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  S   ++   F  +  N++
Sbjct: 247 NILLLSEPDSDDNLMLVDFEYSSYNYR 273

Has a key role in phospholipid biosynthesis. Catalyzes the first step in phosphatidylethanolamine biosynthesis. Phosphorylates ethanolamine, and can also act on choline (in vitro). Has higher activity with ethanolamine. May not significantly contribute to in vivo phosphatidylcholine biosynthesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 8EC: 2

>sp|O54783|CHKB_RAT Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 36  DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  +
Sbjct: 67  EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++  
Sbjct: 127 AERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPR 186

Query: 152 LLWDRLRKWVSVAKSFCSAK--DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+  + +++   +   S          +Y+LKDE++ L   L      + FCHND+Q G
Sbjct: 187 WLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLRTLLDATPSPVVFCHNDIQEG 246

Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  S   ++   F  +  N++
Sbjct: 247 NILLLSEPDSDDNLMLVDFEYSSYNYR 273

Has a key role in phospholipid biosynthesis. Catalyzes the first step in phosphatidylethanolamine biosynthesis. Phosphorylates ethanolamine, and can also act on choline (in vitro). Has higher activity with ethanolamine. May not significantly contribute to in vivo phosphatidylcholine biosynthesis.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|Q9Y259|CHKB_HUMAN Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 36  DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct: 67  EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++  
Sbjct: 127 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 186

Query: 152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+  + +++   +        +     +Y+LKDE+  L K L +    + FCHND+Q G
Sbjct: 187 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 246

Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  +   ++   F  +  N++
Sbjct: 247 NILLLSEPENADSLMLVDFEYSSYNYR 273

Has a key role in phospholipid biosynthesis. Catalyzes the first step in phosphatidylethanolamine biosynthesis. Phosphorylates ethanolamine, and can also act on choline (in vitro). Has higher activity with ethanolamine. May not significantly contribute to in vivo phosphatidylcholine biosynthesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|Q10276|KICH_SCHPO Putative choline kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G7.12c PE=3 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 20/194 (10%)

Query: 36  DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ 95
           + L +  + GA+TN VY +A P   +  A  +L+RIYG  VE+F NR  E+   + ++  
Sbjct: 61  NKLHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVELFINRQVELENLKRLARH 118

Query: 96  GQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL--- 152
             GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L   
Sbjct: 119 NIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMP 178

Query: 153 -LWDRLRKWVSVAKSFCSAKD-----AKEFCLYTLKDEISMLEK---ELPNDHQE----- 198
             W     W+  AK+    +        EF + TL+++ +       E   D ++     
Sbjct: 179 AAWKNCLVWLPKAKAKILGRKHSLAITSEF-MKTLEEDFNAYYNWFVEWSRDKKDWFGLK 237

Query: 199 IGFCHNDLQYGNIM 212
           + F HND QYGN++
Sbjct: 238 MVFSHNDTQYGNLL 251

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 2

>sp|A7MCT6|EKI2_MOUSE Ethanolamine kinase 2 OS=Mus musculus GN=Etnk2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 67  VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRD 126
           VLVR+YGE  E+  +R++E+R F+ + + G  P+L   F +G   E++    L    IR+
Sbjct: 108 VLVRVYGERTELLVDRENEVRNFQLLRAHGCAPKLYCTFQNGLCYEYVQGVALGPEHIRE 167

Query: 127 PKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCSAKDAKEFC-LYTLKDE 184
           P++  L+A +M + H +   G   K  LW ++ ++ ++ K   S   + +   +  L+ E
Sbjct: 168 PQLFRLIALEMAKIHTIHANGSLPKPTLWHKMHRYFTLVKDEISPSLSADVPKVEVLEQE 227

Query: 185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           ++ L++ L      + FCHNDL   NI+ D +   +  I
Sbjct: 228 LAWLKEHLSQLDSPVVFCHNDLLCKNIIYDSDKGRVCFI 266

Highly specific for ethanolamine phosphorylation. Does not have choline kinase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|D3ZRW8|EKI2_RAT Ethanolamine kinase 2 OS=Rattus norvegicus GN=Etnk2 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 67  VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRD 126
           VLVR+YGE  E+  +R++EIR F+ + + G  P+L   F +G   E++    L    IR+
Sbjct: 108 VLVRVYGEWTELLVDRENEIRNFQLLRAHGCAPKLYCTFQNGLCYEYMQGVALGPEHIRE 167

Query: 127 PKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCSAKDAKEFC-LYTLKDE 184
           P++  L+A +M + H +   G   K  LW ++ ++ ++ K   S   + +   +  L+ E
Sbjct: 168 PQLFRLIALEMAKIHTIHANGSLPKPTLWHKMHRYFTLVKDEISPSLSADVPKVEVLEQE 227

Query: 185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           ++ L++ L      + FCHNDL   NI+ D +   +  I
Sbjct: 228 LAWLKEHLSQLDSPVVFCHNDLLCKNIIYDSDKGHVRFI 266

Highly specific for ethanolamine phosphorylation. Does not have choline kinase activity.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|Q9NVF9|EKI2_HUMAN Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=2 SV=3

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 67  VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRD 126
           VLVR+YGE  E+  +R++E+R F+ + +    P+L   F +G   E++    L    IR+
Sbjct: 109 VLVRVYGERTELLVDRENEVRNFQLLRAHSCAPKLYCTFQNGLCYEYMQGVALEPEHIRE 168

Query: 127 PKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCSAKDAKEFC-LYTLKDE 184
           P++  L+A +M + H +   G   K +LW ++  + ++ K+  +   + +   +  L+ E
Sbjct: 169 PRLFRLIALEMAKIHTIHANGSLPKPILWHKMHNYFTLVKNEINPSLSADVPKVEVLERE 228

Query: 185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           ++ L++ L      + FCHNDL   NI+ D     +  I
Sbjct: 229 LAWLKEHLSQLESPVVFCHNDLLCKNIIYDSIKGHVRFI 267

Highly specific for ethanolamine phosphorylation. Does not have choline kinase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|O54804|CHKA_MOUSE Choline kinase alpha OS=Mus musculus GN=Chka PE=1 SV=3

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------E 74
           W  + +D   + VI  +G ++N ++Q + P   A      R VL+R+YG          E
Sbjct: 99  WRGLREDQFHISVI--RGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKE 156

Query: 75  GVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIR 125
           G E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++R
Sbjct: 157 GSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLFGIFPQGRLEQFIPSRRLDTEELR 216

Query: 126 DPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCLY 179
            P IS  +A KM  FH +KMP  ++   L+  + K+++       +++A+     +   Y
Sbjct: 217 LPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKILSY 276

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMI--DEETSSITIIVSFTFLQNMLNFK 236
            L  E+  L   L      + FCHND Q GNI++   +E S    ++   F  +  N++
Sbjct: 277 NLPLELENLRSLLQYTRSPVVFCHNDCQEGNILLLEGQENSERRKLMLIDFEYSSYNYR 335

Has a key role in phospholipid biosynthesis and may contribute to tumor cell growth. Catalyzes the first step in phosphatidylcholine biosynthesis. Contributes to phosphatidylethanolamine biosynthesis. Phosphorylates choline and ethanolamine. Has higher activity with choline.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|Q869T9|EKIA_DICDI Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA PE=3 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 38  LQVIPLKGAMTNEVYQIAWPAKNNGLARN-----VLVRIYGEGVEVFFNRDDEIRTFECM 92
           L +  L G +TN +Y +    ++  + +      V++R+YG   E   +R +E+      
Sbjct: 44  LTIQKLNGGITNVLYLV----EDKNIEQKYRYLPVVIRLYGYKSEEIIDRKNELIIQTEA 99

Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL 152
              G G +  G F +G +  FI    L+  DI  P +   +A ++ ++H ++MP  +   
Sbjct: 100 DQNGLGAKFYGLFDNGCIYGFIKGEPLAYEDISKPTMQTCIAKEIAQWHSIEMPTRKNPS 159

Query: 153 LWDRLRKWVSVAKSFCSAKDAKEFC----LYTLKDEISMLEKELPNDHQEIGFCHNDLQY 208
           LW  ++KW ++A       +  E+     +  + +E  MLE+ L   +  I FCHNDL  
Sbjct: 160 LWPTIKKWAALAPDVYPVPEKNEYYQSINVKKMIEEGKMLEQRLAQLNSPIVFCHNDLLS 219

Query: 209 GNIMIDEETSSITII 223
           GNI+ D   +  + I
Sbjct: 220 GNIIYDPSQNCASFI 234

Highly specific for ethanolamine phosphorylation. May be a rate-controlling step in phosphatidylethanolamine biosynthesis.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

>sp|Q01134|CHKA_RAT Choline kinase alpha OS=Rattus norvegicus GN=Chka PE=2 SV=2

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------E 74
           W  + +D   + VI  +G ++N ++Q + P   A      R VL+R+YG          E
Sbjct: 99  WRGLREDQFHISVI--RGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKE 156

Query: 75  GVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIR 125
           G E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++ 
Sbjct: 157 GSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELC 216

Query: 126 DPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCLY 179
            P IS  +A KM  FH +KMP  ++   L+  + K+++       +++A+     +F  Y
Sbjct: 217 LPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKFLSY 276

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMI--DEETSSITIIVSFTFLQNMLNFK 236
            L  E+  L   L      + FCHND Q GNI++   +E S    ++   F  +  N++
Sbjct: 277 NLPLELENLRSLLQYTRSPVVFCHNDCQEGNILLLEGQENSEKQKLMLIDFEYSSYNYR 335

Has a key role in phospholipid biosynthesis and may contribute to tumor cell growth. Catalyzes the first step in phosphatidylcholine biosynthesis. Contributes to phosphatidylethanolamine biosynthesis. Phosphorylates choline and ethanolamine. Has higher activity with choline.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
255566742	356	choline/ethanolamine kinase, putative [R	0.835	0.626	0.744	4e-95
224066603	360	predicted protein [Populus trichocarpa]	0.835	0.619	0.726	4e-94
224082510	359	predicted protein [Populus trichocarpa]	0.835	0.621	0.730	2e-92
225470840	358	PREDICTED: choline/ethanolamine kinase [	0.947	0.706	0.623	8e-89
388512247	364	unknown [Medicago truncatula]	0.835	0.612	0.709	2e-87
363808234	362	uncharacterized protein LOC100799515 [Gl	0.955	0.704	0.617	7e-86
351726586	362	GmCK2p [Glycine max] gi|1438881|gb|AAC49	0.955	0.704	0.609	1e-84
351724363	359	GmCK1p [Glycine max] gi|1438879|gb|AAC49	0.955	0.710	0.597	2e-82
217072234	343	unknown [Medicago truncatula] gi|3885097	0.835	0.650	0.660	2e-82
356510434	669	PREDICTED: uncharacterized protein LOC54	0.782	0.312	0.685	2e-81

>gi|255566742|ref|XP_002524355.1| choline/ethanolamine kinase, putative [Ricinus communis] gi|223536446|gb|EEF38095.1| choline/ethanolamine kinase, putative [Ricinus communis]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 190/223 (85%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           MAIKT EL+   S EELKK+LQSVAS+WGDV+DD +ALQV+PLKGAMTNEV+QI WP ++
Sbjct: 1   MAIKTNELVEGISQEELKKILQSVASEWGDVVDDMEALQVMPLKGAMTNEVFQINWPTRS 60

Query: 61  NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS 120
             + R +L+RIYG+GVEVFF RDDEIRTFECMS  GQGPRLLGRF DGRVEEFIHARTLS
Sbjct: 61  GDVIRKLLIRIYGKGVEVFFKRDDEIRTFECMSKHGQGPRLLGRFADGRVEEFIHARTLS 120

Query: 121 AADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT 180
           AAD+RDP+IS LVAAKMREFHDL MPGPR  LLW R+R W++ AK  CSAKDAK+F L  
Sbjct: 121 AADLRDPEISALVAAKMREFHDLDMPGPRNVLLWSRMRNWLTKAKHLCSAKDAKKFHLDC 180

Query: 181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           L DEI+MLEK+L  + Q+IGFCHNDLQYGNIM+DEET SITII
Sbjct: 181 LGDEINMLEKQLSQEVQDIGFCHNDLQYGNIMMDEETRSITII 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066603|ref|XP_002302158.1| predicted protein [Populus trichocarpa] gi|222843884|gb|EEE81431.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 190/223 (85%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           M +KT   +    P+ELK+VL+SV S+WGDV+DD +ALQV+PLKGAMTNEV++I WP K 
Sbjct: 1   MVMKTNGFIEGGFPDELKRVLRSVGSEWGDVVDDMEALQVVPLKGAMTNEVFRIIWPTKC 60

Query: 61  NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS 120
             L RN+LVRIYGEGVE FFNRD+EIRTFECMS  GQGPRLLGRF DGRVEEFIHARTLS
Sbjct: 61  GNLNRNILVRIYGEGVEAFFNRDNEIRTFECMSKHGQGPRLLGRFADGRVEEFIHARTLS 120

Query: 121 AADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT 180
           AAD+RD +IS LVAAKMREFHDL+MPGPR  LLW+R+R W+  AKS CSAKD KEFCL +
Sbjct: 121 AADLRDHEISALVAAKMREFHDLEMPGPRTILLWNRMRGWLVQAKSMCSAKDVKEFCLDS 180

Query: 181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           L++EI+MLEKEL +D+ +IGFCHNDLQYGNIM+DEET SIT+I
Sbjct: 181 LENEINMLEKELSHDYLDIGFCHNDLQYGNIMLDEETRSITLI 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082510|ref|XP_002306722.1| predicted protein [Populus trichocarpa] gi|222856171|gb|EEE93718.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 188/223 (84%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           M +KT   +  S P+ELKKVL+SV S+WGDV+DD ++LQVIPLKGAMTNEV+QI WP K 
Sbjct: 1   MVMKTNGFVDGSLPDELKKVLRSVGSEWGDVVDDMESLQVIPLKGAMTNEVFQINWPTKC 60

Query: 61  NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS 120
             L R ++VRIYGEGVE FFNRDDEIRTFECMS  GQGPRLLGRF DGRVEEFIHARTLS
Sbjct: 61  GNLDRKLVVRIYGEGVEAFFNRDDEIRTFECMSKHGQGPRLLGRFADGRVEEFIHARTLS 120

Query: 121 AADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT 180
           AAD+RD +IS LVAAKMREFH+L+MPGPR  LLW+R+R W+  AKS CSAK  KEF L +
Sbjct: 121 AADLRDHEISALVAAKMREFHNLEMPGPRTVLLWNRMRDWLVEAKSMCSAKCVKEFRLDS 180

Query: 181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           L+DEISMLEKEL +D+ +IGFCHNDLQYGNIM+DEET SIT+I
Sbjct: 181 LEDEISMLEKELSHDYLDIGFCHNDLQYGNIMLDEETRSITLI 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470840|ref|XP_002265759.1| PREDICTED: choline/ethanolamine kinase [Vitis vinifera] gi|296083138|emb|CBI22774.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/255 (62%), Positives = 191/255 (74%), Gaps = 2/255 (0%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           M +K   L      EEL+K+L S+AS WGDV+DD   L+VIPLKGAMTNE+YQI WP + 
Sbjct: 1   MTVKNNGLSKGCVSEELRKLLISLASSWGDVVDDPKKLRVIPLKGAMTNEIYQINWPIEA 60

Query: 61  NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS 120
               R+VLVR+YGEGVEVFF+RDDEIRTFECMS  G GPRLLGRF DGRVEEFIHA+TLS
Sbjct: 61  G--TRSVLVRVYGEGVEVFFDRDDEIRTFECMSEHGHGPRLLGRFADGRVEEFIHAKTLS 118

Query: 121 AADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT 180
           AAD+RDP+IS LVAAK+REFH L+MPGP+   LWDR+R WV  AK   S KDAKEFCL T
Sbjct: 119 AADLRDPEISALVAAKLREFHRLEMPGPKNVFLWDRMRNWVGEAKRLSSPKDAKEFCLDT 178

Query: 181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT 240
           L++EISML+KE   DHQ+IGFCHNDLQYGNIMIDE+T +ITII       N + +  A  
Sbjct: 179 LEEEISMLQKEFSQDHQDIGFCHNDLQYGNIMIDEKTRAITIIDYEYASYNPVAYDLANH 238

Query: 241 KILLILTFSVNSPMV 255
              ++  +  ++P +
Sbjct: 239 FCEMVANYHTDTPHI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512247|gb|AFK44185.1| unknown [Medicago truncatula]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 183/224 (81%), Gaps = 1/224 (0%)

Query: 1   MAIKTTELLP-SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK 59
           MAIKT ELL  S+S EEL +V+ +VASD GDVIDD + LQVIPLKGAMTNEV+QI WP K
Sbjct: 1   MAIKTIELLKGSASQEELMEVITAVASDLGDVIDDVNTLQVIPLKGAMTNEVFQINWPTK 60

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
           N+G  R VLVR+YGEGVE+FFNRD+EIRTFEC+S  GQGPRLL RF  GRVEEFIHARTL
Sbjct: 61  NDGDLRKVLVRLYGEGVEIFFNRDEEIRTFECISKHGQGPRLLARFTTGRVEEFIHARTL 120

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
           SA D+RD +IS LVA+KMREFH L MPG +KA +W R+R WV  AKS CS K+ K+F L 
Sbjct: 121 SAIDLRDSEISSLVASKMREFHKLHMPGTKKAHIWQRMRNWVGEAKSLCSPKETKKFGLD 180

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
            L DEI++LEKEL   +QEIGFCHNDLQYGNIM+DEET SIT+I
Sbjct: 181 NLDDEINILEKELCEGYQEIGFCHNDLQYGNIMMDEETRSITLI 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808234|ref|NP_001241979.1| uncharacterized protein LOC100799515 [Glycine max] gi|255645201|gb|ACU23098.1| unknown [Glycine max]

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 158/256 (61%), Positives = 195/256 (76%), Gaps = 1/256 (0%)

Query: 1   MAIKTTELLPS-SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK 59
           MAIKT ELL    S EE+ +VL +VASD GDVIDD + LQVIPL GA+TNEV+QI WP K
Sbjct: 1   MAIKTMELLKGCGSQEEIMEVLSAVASDLGDVIDDVNTLQVIPLNGALTNEVFQINWPTK 60

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
           N+G  R VL+R+YGEGVEVFF+R++EIRTFEC+S  GQGPRLLGRF  GRVEEFIHARTL
Sbjct: 61  NDGEVRKVLIRLYGEGVEVFFDREEEIRTFECISKHGQGPRLLGRFTSGRVEEFIHARTL 120

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
           SAAD+RDP++S L+A+KMREFH+L MPG +KA +W R+RKW+  AKS CS KDAK+F L 
Sbjct: 121 SAADLRDPEVSALIASKMREFHNLHMPGAKKAQIWHRVRKWLGQAKSLCSPKDAKKFGLD 180

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC 239
            L +EI++LEK+L   +QEI FCHNDLQYGNIM+DEET  ITII       N + +  A 
Sbjct: 181 NLDEEINILEKKLSEGYQEIVFCHNDLQYGNIMMDEETRLITIIDYEYAGYNPIAYDLAN 240

Query: 240 TKILLILTFSVNSPMV 255
               ++  +  ++P V
Sbjct: 241 HFCEMVADYHSDTPHV 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726586|ref|NP_001235340.1| GmCK2p [Glycine max] gi|1438881|gb|AAC49375.1| GmCK2p [Glycine max]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 190/256 (74%), Gaps = 1/256 (0%)

Query: 1   MAIKTTELLPS-SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK 59
           MAIK  ELL    S EE+ +VL +VASD GDVIDD + LQVIPL GAMTNEV+QI WP K
Sbjct: 1   MAIKAIELLKGCGSQEEIMEVLAAVASDLGDVIDDVNTLQVIPLNGAMTNEVFQINWPTK 60

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
           N G  R VLVR+YGEGVEVFF+R++EIR F+C+S  GQGPRLLGRF  GRVEEFIHARTL
Sbjct: 61  NGGEIRKVLVRLYGEGVEVFFDREEEIRNFDCISKHGQGPRLLGRFTSGRVEEFIHARTL 120

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
           SAAD+RDP++S L+A+KMREFH+L MPG +K  +W R+RKW+  AKS CS KD K F L 
Sbjct: 121 SAADLRDPEVSALIASKMREFHNLHMPGAKKVQIWHRMRKWLGQAKSLCSPKDEKNFGLD 180

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC 239
            L +EI++LEK+L   +QEIGFCHNDLQYGNIM+DEET  ITII       N + +  A 
Sbjct: 181 NLDEEINILEKKLSEGYQEIGFCHNDLQYGNIMMDEETRLITIIDYEYASYNPIAYDLAN 240

Query: 240 TKILLILTFSVNSPMV 255
               ++  +  ++P V
Sbjct: 241 HFCEMVADYHSDTPHV 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724363|ref|NP_001236799.1| GmCK1p [Glycine max] gi|1438879|gb|AAC49374.1| GmCK1p [Glycine max]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/256 (59%), Positives = 190/256 (74%), Gaps = 1/256 (0%)

Query: 1   MAIKTTELLPSS-SPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK 59
           MAIK  ELL  S + EE+ +VL +VA+  GDVIDD + LQV PLKGAMTNEV+++ WP K
Sbjct: 1   MAIKAIELLKGSGNHEEIFEVLAAVAASLGDVIDDVNTLQVTPLKGAMTNEVFEVNWPTK 60

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
           ++G  R VLVR+YGEGVEVFFNR DEI+TFECMS  GQGPRLLGRF  GRVEEFIHA+TL
Sbjct: 61  SDGHQRRVLVRLYGEGVEVFFNRVDEIQTFECMSKHGQGPRLLGRFTTGRVEEFIHAKTL 120

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
           SAAD+RDP+IS L+A+KMREFH+L MPG +KA LW R+RKW+S AKS CS K+ K F L 
Sbjct: 121 SAADLRDPEISALIASKMREFHNLHMPGAKKAQLWQRMRKWLSHAKSLCSPKETKNFGLD 180

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC 239
            L  EI+ML + L   +Q+IGFCHNDLQYGNIM+DE+T +IT+I       N + +  A 
Sbjct: 181 NLDAEINMLVELLSQGNQQIGFCHNDLQYGNIMMDEDTRAITLIDYEYASYNPIGYDLAN 240

Query: 240 TKILLILTFSVNSPMV 255
               ++  +  + P V
Sbjct: 241 HFCEMVANYHSDEPHV 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072234|gb|ACJ84477.1| unknown [Medicago truncatula] gi|388509770|gb|AFK42951.1| unknown [Medicago truncatula]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/224 (66%), Positives = 179/224 (79%), Gaps = 1/224 (0%)

Query: 1   MAIKTTELLPS-SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK 59
           MA+KT ELL    + EE+ KVL +VA D GDVIDD   ++V PLKGAMTN+V+++ WP K
Sbjct: 1   MALKTFELLKGCETHEEIMKVLAAVAVDLGDVIDDVSTVEVNPLKGAMTNQVFEVNWPTK 60

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
           ++G  R VLVR+YGEGVEVFFNRDDEI+TFECMS  GQGPRLLGRF  GRVEEFIHARTL
Sbjct: 61  SDGHLRRVLVRLYGEGVEVFFNRDDEIQTFECMSKNGQGPRLLGRFTTGRVEEFIHARTL 120

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
           SA+D+RDP+IS L+A+KM+EFH+L MPG +KA +W R+RKW++ AKS CS KD   F L 
Sbjct: 121 SASDLRDPEISSLIASKMKEFHNLHMPGAKKAQIWQRMRKWLNHAKSLCSQKDIINFGLD 180

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
            L  E+SML   L  ++QEIGFCHNDLQYGNIM+DEET SIT+I
Sbjct: 181 NLDAELSMLRALLSEEYQEIGFCHNDLQYGNIMMDEETRSITLI 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510434|ref|XP_003523943.1| PREDICTED: uncharacterized protein LOC547867 [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 1/210 (0%)

Query: 14  PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYG 73
           PEE K++L+S+AS W DV+D ++ALQVIPLKGAMTNEV+QI WP     L+R VLVR+YG
Sbjct: 295 PEEAKEILKSLASKWEDVLD-ANALQVIPLKGAMTNEVFQIKWPTMTGELSRKVLVRMYG 353

Query: 74  EGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELV 133
           EGV+VFF+RD+EI TFE MS  GQGPRLLGRF +GRVEEFIHARTLSA+D+RDP IS L+
Sbjct: 354 EGVDVFFDRDNEIHTFEFMSKNGQGPRLLGRFTNGRVEEFIHARTLSASDLRDPSISALI 413

Query: 134 AAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP 193
           AAKM+EFHDL MPG +K  LWDRLR W+S AK   S K+ + F L T+  EIS+LEKEL 
Sbjct: 414 AAKMKEFHDLDMPGEKKVHLWDRLRNWLSEAKRLSSPKEVEAFYLDTIDKEISILEKELS 473

Query: 194 NDHQEIGFCHNDLQYGNIMIDEETSSITII 223
             HQ+I FCHNDLQYGNIM+DEET+S+TII
Sbjct: 474 GSHQQIKFCHNDLQYGNIMLDEETNSVTII 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2118450	346	AT4G09760 "AT4G09760" [Arabido	0.831	0.641	0.620	9.3e-75
TAIR|locus:2824546	346	CK1 "choline kinase 1" [Arabid	0.835	0.644	0.632	1.9e-74
TAIR|locus:2019612	350	AT1G74320 "AT1G74320" [Arabido	0.782	0.597	0.657	3.6e-73
TAIR|locus:2039518	374	emb1187 "embryo defective 1187	0.805	0.574	0.311	1.6e-24
MGI|MGI:1328313	394	Chkb "choline kinase beta" [Mu	0.752	0.510	0.280	1.1e-20
UNIPROTKB|G3X782	395	CHKB "Uncharacterized protein"	0.752	0.508	0.280	2e-20
UNIPROTKB|Q9Y259	395	CHKB "Choline/ethanolamine kin	0.722	0.488	0.278	2.6e-20
RGD|61826	394	Chkb "choline kinase beta" [Ra	0.752	0.510	0.280	5.6e-20
POMBASE|SPAC13G7.12c	456	SPAC13G7.12c "choline kinase (	0.711	0.416	0.306	6.3e-19
CGD|CAL0000339	622	orf19.6966 [Candida albicans (	0.471	0.202	0.300	1.6e-17

TAIR|locus:2118450 AT4G09760 "AT4G09760" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 139/224 (62%), Positives = 181/224 (80%)

Query:     1 MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
             MA+    L+PSSSP+EL+K+LQ++++ WGDV++D ++L+V P+KGAMTNEV+ ++WP K 
Sbjct:     1 MAVGIFGLIPSSSPDELRKILQALSTKWGDVVEDFESLEVKPMKGAMTNEVFMVSWPRKE 60

Query:    61 NGL-ARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
               L  R +LVR+YGEGVE+FFNRDDEIRTFE ++  G GP LLGRF  GRVEEFIHARTL
Sbjct:    61 TNLRCRKLLVRVYGEGVELFFNRDDEIRTFEYVARHGHGPTLLGRFAGGRVEEFIHARTL 120

Query:   120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY 179
             SA D+RDP IS LVA+K+R FH + +PG R  L+WDR+R WV  AK+ CS + + EF L 
Sbjct:   121 SATDLRDPNISALVASKLRRFHSIHIPGDRIMLIWDRMRTWVGQAKNLCSNEHSTEFGLD 180

Query:   180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
              ++DEI++LE+E+ N+ QEIGFCHNDLQYGNIMIDEET++ITII
Sbjct:   181 DIEDEINLLEQEV-NNEQEIGFCHNDLQYGNIMIDEETNAITII 223

GO:0004103 "choline kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2824546 CK1 "choline kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 143/226 (63%), Positives = 180/226 (79%)

Query:     1 MAIKT-TELLPS-SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPA 58
             MAIKT T L+PS SSPE+LK+VLQ++ S WGDV++D + L+V+PLKGAMTNEVYQI WP 
Sbjct:     1 MAIKTKTSLIPSCSSPEDLKRVLQTLGSSWGDVVEDLERLEVVPLKGAMTNEVYQINWPT 60

Query:    59 KNN-GLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHAR 117
              N   + R VLVRIYG+GV++FFNR DEI+TFECMS  G GP+LLGRF DGR+EEFIHAR
Sbjct:    61 LNGEDVHRKVLVRIYGDGVDLFFNRGDEIKTFECMSHHGYGPKLLGRFSDGRLEEFIHAR 120

Query:   118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFC 177
             TLSA D+R  + S+ +AAK+REFH L MPGP+  LLW+RLR W+  AK+  S  +  ++ 
Sbjct:   121 TLSADDLRVAETSDFIAAKLREFHKLDMPGPKNVLLWERLRTWLKEAKNLASPIEMDKYR 180

Query:   178 LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
             L  L++EI++LE+ L  D QEIGFCHNDLQYGN+MIDE T++ITII
Sbjct:   181 LEGLENEINLLEERLTRDDQEIGFCHNDLQYGNVMIDEVTNAITII 226

GO:0005737 "cytoplasm" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0004103 "choline kinase activity" evidence=ISS

TAIR|locus:2019612 AT1G74320 "AT1G74320" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 138/210 (65%), Positives = 171/210 (81%)

Query:    14 PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYG 73
             P E+K+ LQ++AS+W DVID S ALQVIPLKGAMTNEV+QI WP +  G +R VLVRIYG
Sbjct:    18 PREVKEALQAIASEWEDVID-SKALQVIPLKGAMTNEVFQIKWPTREKGPSRKVLVRIYG 76

Query:    74 EGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELV 133
             EGVE+FF+R+DEIRTFE MS  G GP LLGRFG+GR+EEF+HARTLSA D+RDP+IS  +
Sbjct:    77 EGVEIFFDREDEIRTFEFMSKHGHGPLLLGRFGNGRIEEFLHARTLSACDLRDPEISGRI 136

Query:   134 AAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP 193
             A +M+EFH L+MPG +KALLWDRLR W++  K   S ++AK F L  ++ EI+MLEK L 
Sbjct:   137 ATRMKEFHGLEMPGAKKALLWDRLRNWLTACKRLASPEEAKSFRLDVMEMEINMLEKSLF 196

Query:   194 NDHQEIGFCHNDLQYGNIMIDEETSSITII 223
             ++ + IGFCHNDLQYGNIM+DEET +ITII
Sbjct:   197 DNDENIGFCHNDLQYGNIMMDEETKAITII 226

GO:0004103 "choline kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2039518 emb1187 "embryo defective 1187" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 71/228 (31%), Positives = 122/228 (53%)

Query:     3 IKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNG 62
             + T+  LP   P  ++ + + +  +WG+ +DDS    V  + G +TN + +++     N 
Sbjct:    30 VDTSLPLPLMIPRIIE-LCKDLFKNWGE-LDDS-LFSVERVSGGITNLLLKVSVKEDTNK 86

Query:    63 LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAA 122
                +V VR+YG   E   NR+ EI   + +S+ G G +LLG FG+G V+ FI+ARTL  +
Sbjct:    87 EV-SVTVRLYGPNTEYVINREREILAIKYLSAAGFGAKLLGGFGNGMVQSFINARTLEPS 145

Query:   123 DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLK 182
             D+R+PKI+  +A ++ +FH + +PG ++  LW  + K+   A +    +  K+    T+ 
Sbjct:   146 DMREPKIAAQIARELGKFHKVDIPGSKEPQLWVDILKFYEKASTLTFEEPDKQKLFETIS 205

Query:   183 DEISMLEKELPNDHQEIG-------FCHNDLQYGNIMIDEETSSITII 223
              E   L KE+    +  G       F HNDL  GN M+++E   + +I
Sbjct:   206 FE--ELHKEIIELREFTGLLNAPVVFAHNDLLSGNFMLNDEEEKLYLI 251

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA;ISS

MGI|MGI:1328313 Chkb "choline kinase beta" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 58/207 (28%), Positives = 110/207 (53%)

Query:    36 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
             + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  +
Sbjct:    67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query:    93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL 152
             + +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++  
Sbjct:   127 AERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPR 186

Query:   153 -LWDRLRKWVSVAKSFCSAK--DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
              L+  + +++   +   S          +Y+LKDE++ L K L +    + FCHND+Q G
Sbjct:   187 WLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLLDDTPSPVVFCHNDIQEG 246

Query:   210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
             NI++  E  S   ++   F  +  N++
Sbjct:   247 NILLLSEPDSDDNLMLVDFEYSSYNYR 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004103 "choline kinase activity" evidence=ISO;IMP

GO:0004305 "ethanolamine kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=ISO

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IMP

GO:0006657 "CDP-choline pathway" evidence=ISO;IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046474 "glycerophospholipid biosynthetic process" evidence=IEA

UNIPROTKB|G3X782 CHKB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 58/207 (28%), Positives = 110/207 (53%)

Query:    36 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
             + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct:    67 EELRVDPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query:    93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
             + +  GP+L G F +GR+E++I +R L   ++RDP +S  +A KM +FH ++MP  ++  
Sbjct:   127 AERSLGPQLYGVFPEGRLEQYIPSRPLKTHELRDPVLSAAIATKMAKFHGMEMPFTKEPH 186

Query:   152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
              L+  + +++   +     S        +Y+LKDE+  L K L      + FCHND+Q G
Sbjct:   187 WLFGTMERYLKQIQDLPPTSLPQMNLLEMYSLKDEMGNLRKLLDTTPSPVVFCHNDIQEG 246

Query:   210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
             NI++  E  +   ++   F  +  N++
Sbjct:   247 NILLLSEPKNTDSLMLVDFEYSSYNYR 273

GO:0007517 "muscle organ development" evidence=IEA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q9Y259 CHKB "Choline/ethanolamine kinase" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 56/201 (27%), Positives = 110/201 (54%)

Query:    36 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
             + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct:    67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query:    93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
             + +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++  
Sbjct:   127 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 186

Query:   152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
              L+  + +++   +        +     +Y+LKDE+  L K L +    + FCHND+Q G
Sbjct:   187 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 246

Query:   210 NIMI--DEETSSITIIVSFTF 228
             NI++  + E +   ++V F +
Sbjct:   247 NILLLSEPENADSLMLVDFEY 267

GO:0005524 "ATP binding" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;IDA;TAS

GO:0004103 "choline kinase activity" evidence=IDA

GO:0004305 "ethanolamine kinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006657 "CDP-choline pathway" evidence=IDA

RGD|61826 Chkb "choline kinase beta" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 58/207 (28%), Positives = 108/207 (52%)

Query:    36 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
             + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  +
Sbjct:    67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAIL 126

Query:    93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL 152
             + +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++  
Sbjct:   127 AERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPR 186

Query:   153 -LWDRLRKWVSVAKSFCSAK--DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
              L+  + +++   +   S          +Y+LKDE++ L   L      + FCHND+Q G
Sbjct:   187 WLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLRTLLDATPSPVVFCHNDIQEG 246

Query:   210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
             NI++  E  S   ++   F  +  N++
Sbjct:   247 NILLLSEPDSDDNLMLVDFEYSSYNYR 273

GO:0004103 "choline kinase activity" evidence=ISO;ISS;IDA

GO:0004305 "ethanolamine kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISO;ISS

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=ISO

GO:0006657 "CDP-choline pathway" evidence=ISO;ISS;IDA

GO:0007517 "muscle organ development" evidence=IEA;ISO

GO:0016310 "phosphorylation" evidence=ISO

POMBASE|SPAC13G7.12c SPAC13G7.12c "choline kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 233 (87.1 bits), Expect = 6.3e-19, P = 6.3e-19
 Identities = 65/212 (30%), Positives = 108/212 (50%)

Query:    20 VLQSVA-SDWGDV-IDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE 77
             ++  +A S W  + +   + L +  + GA+TN VY +A P   +  A  +L+RIYG  VE
Sbjct:    43 IIHKLAISSWNRIPLTLCNKLHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVE 100

Query:    78 VFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKM 137
             +F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++
Sbjct:   101 LFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRL 160

Query:   138 REFHDLKMPGPRKAL----LWDRLRKWVSVAKS-FCSAKDA----KEFCLYTLKDEISML 188
              E H+  +  P + L     W     W+  AK+     K +     EF + TL+++ +  
Sbjct:   161 CELHNFILLHPHEVLEMPAAWKNCLVWLPKAKAKILGRKHSLAITSEF-MKTLEEDFNAY 219

Query:   189 EK---ELPNDHQE-IG----FCHNDLQYGNIM 212
                  E   D ++  G    F HND QYGN++
Sbjct:   220 YNWFVEWSRDKKDWFGLKMVFSHNDTQYGNLL 251

GO:0004103 "choline kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=ISO

CGD|CAL0000339 orf19.6966 [Candida albicans (taxid:5476)]

 Score = 186 (70.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 40/133 (30%), Positives = 76/133 (57%)

Query:    38 LQVIPLKGAMTNEVYQIAWPAKNNGL-ARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQG 96
             L +  + GA+TN +Y+I +  ++  +    +L+R+YG+ V+   +RD+E+     +S + 
Sbjct:   160 LSINRISGALTNAIYKIEYHDESQNIHLPTLLLRVYGKNVDELIDRDNELAILIKLSQKR 219

Query:    97 QGPRLLGRFGDGRVEEFIHAR-TLSAADIRDPKISELVAAKMREFH-----DLKMPGPRK 150
              GPRLLG F +GR E+F+    TL+   IRD  +S+++  +M++ H     D K    ++
Sbjct:   220 IGPRLLGIFSNGRFEQFLDGFITLNKEQIRDEILSQMLGRRMKDLHYKIELDAKDYESKQ 279

Query:   151 ALLWDRLRKWVSV 163
                W+ + KW+ +
Sbjct:   280 PTCWNLIDKWLKI 292

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IEA

GO:0004305 "ethanolamine kinase activity" evidence=IEA

GO:0004103 "choline kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_II000596	choline kinase (EC-2.7.1.32) (360 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_scaffold_28000149	ethanolamine-phosphate cytidylyltransferase (EC-2.7.7.14) (362 aa)						•			0.900
	gw1.XVI.551.1	ethanolamine-phosphate cytidylyltransferase (EC-2.7.7.14) (363 aa)						•			0.899
	gw1.VI.1940.1	choline-phosphate cytidylyltransferase (EC-2.7.7.15) (286 aa)						•			0.899
	fgenesh4_pm.C_LG_VI000219	ethanolamine-phosphate cytidylyltransferase (EC-2.7.7.14) (395 aa)						•			0.899
	eugene3.00820009	SubName- Full=Putative uncharacterized protein; (399 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVIII0261	ethanolamine-phosphate cytidylyltransferase (EC-2.7.7.14) (401 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
PLN02236	344	PLN02236, PLN02236, choline kinase	1e-153
pfam01633	206	pfam01633, Choline_kinase, Choline/ethanolamine ki	4e-68
cd05156	302	cd05156, ChoK_euk, Choline Kinase (ChoK) in eukary	3e-52
cd05157	235	cd05157, ETNK_euk, Ethanolamine kinase (ETNK) in e	2e-42
PLN02421	330	PLN02421, PLN02421, phosphotransferase, alcohol gr	4e-34
cd05151	170	cd05151, ChoK, Choline Kinase (ChoK)	7e-17
PTZ00296	442	PTZ00296, PTZ00296, choline kinase; Provisional	6e-16
COG0510	269	COG0510, ycfN, Thiamine kinase and related kinases	1e-06
PTZ00384	383	PTZ00384, PTZ00384, choline kinase; Provisional	7e-06
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	1e-04
pfam01636	238	pfam01636, APH, Phosphotransferase enzyme family	1e-04

>gnl|CDD|177880 PLN02236, PLN02236, choline kinase

 Score =  429 bits (1106), Expect = e-153
 Identities = 161/223 (72%), Positives = 184/223 (82%), Gaps = 1/223 (0%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           M  KT  L     P+ELK++L S+AS WGDV+DD  ALQVIPLKGAMTNEV+QI WP K 
Sbjct: 3   MVEKTVGLSSGRIPDELKRILHSLASKWGDVVDDE-ALQVIPLKGAMTNEVFQIKWPTKE 61

Query: 61  NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS 120
             L R VLVRIYGEGVE+FF+RDDEIRTFECMS  GQGPRLLGRF +GRVEEFIHARTLS
Sbjct: 62  GNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQGPRLLGRFPNGRVEEFIHARTLS 121

Query: 121 AADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT 180
           AAD+RDP+IS L+AAK+REFH L MPGP+  LLWDRLR W+  AK+ CS ++AKEF L +
Sbjct: 122 AADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDS 181

Query: 181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           L+DEI++LEKEL  D QEIGFCHNDLQYGNIMIDEET +ITII
Sbjct: 182 LEDEINLLEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITII 224

Length = 344

>gnl|CDD|216617 pfam01633, Choline_kinase, Choline/ethanolamine kinase

 Score =  209 bits (533), Expect = 4e-68
 Identities = 77/162 (47%), Positives = 107/162 (66%), Gaps = 2/162 (1%)

Query: 64  ARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAAD 123
            R VLVRIYG G E+  +R+ EI  F  +S +G GP+L G F +GRVEEFI +RTLSA D
Sbjct: 2   PRKVLVRIYGAGTELLIDRETEIEIFALLSERGLGPKLYGFFPNGRVEEFIPSRTLSAED 61

Query: 124 IRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVS--VAKSFCSAKDAKEFCLYTL 181
           +RDP+IS+ +A ++REFHD++ PG +   L+D +RKW +    ++   +K  K   L  L
Sbjct: 62  LRDPEISKKIAKRLREFHDIEPPGKKSPSLFDTIRKWEAQITFENVNKSKGLKLIDLEDL 121

Query: 182 KDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITII 223
           + EI+ LEK L N    I FCHNDLQ GNI++D  T+ + +I
Sbjct: 122 EKEINELEKLLENLESPIVFCHNDLQPGNILLDNSTNRLVLI 163

Choline kinase catalyzes the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if [add Pfam ID here for Choline_kinase_C] is also present then it is definitely a member of this family. Length = 206

>gnl|CDD|240177 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukaryotes

 Score =  172 bits (437), Expect = 3e-52
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 20/206 (9%)

Query: 38  LQVIPLKGAMTNEVYQIAWPAKNNG--LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ 95
           L+V  + G +TN VY+++ P ++      R VL+R+YG+ VE+  +R+ E+  F  +S +
Sbjct: 1   LEVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSER 60

Query: 96  GQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLW 154
             GP+L G F +GR+EEFI +RTL+  ++RDP IS  +A +M + H + +P  P +  L 
Sbjct: 61  NLGPKLYGIFPNGRIEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLT 120

Query: 155 DRLRKWVSVAKSFCSAKDAKE--FCLYTLKDEIS------------MLEKELPNDHQEIG 200
             + K +                     L+ E+S            +LE         + 
Sbjct: 121 PAIWKLLKQWLDLAETVIEIVDSDSEKLLEVELSLFLEDEAKYLRFLLESTSEESGSPVV 180

Query: 201 FCHNDLQYGNIMIDE---ETSSITII 223
           FCHNDLQ GNI++     ET  + +I
Sbjct: 181 FCHNDLQEGNILLLNPSSETKKLVLI 206

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancers such as breast, lung, colon, prostate, neuroblastoma, and hepatic lymphoma. In mammalian cells, there are three ChoK isoforms (A-1, A-2, and B) which are active in homo or heterodimeric forms. Length = 302

>gnl|CDD|240178 cd05157, ETNK_euk, Ethanolamine kinase (ETNK) in eukaryotes

 Score =  144 bits (365), Expect = 2e-42
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 18/199 (9%)

Query: 38  LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ 97
           +      G +TN++ +++           VLVR+YG   E+  +R+ E+R  + +S  G 
Sbjct: 1   ITFKRFTGGITNKLVKVSNK---EDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL 57

Query: 98  GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP------GPRKA 151
            P+L   F +G + EFI  RTL   D+R+PKI  L+A ++ + H +K P      G  K 
Sbjct: 58  APKLYATFQNGLIYEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKP 117

Query: 152 LLWDRLRKWVSVAKSFCSAKDAKEFCLYT-------LKDEISMLEKELPNDHQEIGFCHN 204
           +LW  +RKW+++  +    K  ++F   T       L+DEIS L++ L   +  I FCHN
Sbjct: 118 ILWPTIRKWINLVPT--EFKKPEKFQKKTKAISFEQLRDEISWLKELLSALNSPIVFCHN 175

Query: 205 DLQYGNIMIDEETSSITII 223
           DL  GNI+ +EE +S+  I
Sbjct: 176 DLLSGNIIYNEEKNSVKFI 194

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryonic development. It may also have a role in testicular maturation. Length = 235

>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as acceptor/kinase

 Score =  125 bits (316), Expect = 4e-34
 Identities = 63/203 (31%), Positives = 116/203 (57%), Gaps = 8/203 (3%)

Query: 26  SDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDE 85
             W D+ DDSD   V  + G +TN + +++   + NG   +V VR++G   +   +R+ E
Sbjct: 7   KGWSDL-DDSD-FSVERISGGITNLLLKVS-VKEENGNEVSVTVRLFGPNTDYVIDRERE 63

Query: 86  IRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM 145
           ++  + +S+ G G +LLG FG+G ++ FI+ARTL+ +D+R PK++  +A ++R  H +++
Sbjct: 64  LQAIKYLSAAGFGAKLLGVFGNGMIQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEI 123

Query: 146 PGPRKALLWDRLRKWVSVAK--SFCSAKDAKEF---CLYTLKDEISMLEKELPNDHQEIG 200
           PG ++  LW+ + K+   A    F   +  K++       L+DEI  L++   +    + 
Sbjct: 124 PGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKEITDSLKAPVV 183

Query: 201 FCHNDLQYGNIMIDEETSSITII 223
           F HNDL  GN+M++E+   +  I
Sbjct: 184 FAHNDLLSGNLMLNEDEGKLYFI 206

Length = 330

>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK)

 Score = 75.8 bits (187), Expect = 7e-17
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 63/183 (34%)

Query: 38  LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ 97
           + + PLKG MTN+ Y++    K        +VRI G G E+  NR++E    +  +  G 
Sbjct: 1   IHISPLKGGMTNKNYRVEVANKK------YVVRIPGNGTELLINRENEAENSKLAAEAGI 54

Query: 98  GPRLLGRFGD----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALL 153
           GP+L   + D      + EFI    L   D  DP+  E +A  +++ H   +P       
Sbjct: 55  GPKLY--YFDPETGVLITEFIEGSELLTEDFSDPENLEKIAKLLKKLHSSPLP------- 105

Query: 154 WDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMI 213
                                                       ++  CHNDL  GN ++
Sbjct: 106 --------------------------------------------DLVPCHNDLLPGNFLL 121

Query: 214 DEE 216
           D+ 
Sbjct: 122 DDG 124

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Length = 170

>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional

 Score = 76.5 bits (188), Expect = 6e-16
 Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 35/236 (14%)

Query: 1   MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN 60
           + +   E    + P  +KK+      +W    +D   ++V  +   +TN++++++   + 
Sbjct: 73  IPLCAQEFSDLTDPLYIKKICLEKVPEWRRFTEDD--VRVNQILSGLTNQLFEVSLKEET 130

Query: 61  NG----LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHA 116
                 + R VL RIYG+ V+  +N   E   ++ MS     P+LL  F  GR+EE+++ 
Sbjct: 131 ANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSKYRIAPQLLNTFSGGRIEEWLYG 190

Query: 117 RTLSAADIRDPKISELVAAKMREFHDL--KMPGPRKALLWD-------RLRKWVSVAKSF 167
             L   D+++P I   +A  + +FH L  K   P     WD        + KW +    +
Sbjct: 191 DPLRIDDLKNPSILIGIANVLGKFHTLSRKRHLPEH---WDRTPCIFKMMEKWKNQLSKY 247

Query: 168 CS-----------AKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIM 212
            +            K++++F  +    ++      L ND   I FCHNDLQ  NI+
Sbjct: 248 KNIEKYQRDIHKYIKESEKFIKFM---KVYSKSDNLAND---IVFCHNDLQENNII 297

Length = 442

>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 21/179 (11%)

Query: 47  MTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLL---- 102
           +TN  ++I      NGL      RI GEG  VF  R+ E      +      P+LL    
Sbjct: 4   LTNPSWKIT---PLNGLT-GYAFRIEGEGTRVFLKRNFEPFLPALIFRLIV-PKLLWLKR 58

Query: 103 GRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-KALLW--DRLR 158
              G   V ++  + RTL+     +    + +A  +++ H+      +           +
Sbjct: 59  IANGGVLVAQYWENGRTLTP----EDMNLKKIAHILKKLHNSVPLLHQLPRSGSSFIEPK 114

Query: 159 KWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIG-FCHNDLQYGNIMIDEE 216
            ++ +     S        L     E   L + L    ++    CHNDL  GN+++ ++
Sbjct: 115 DYLELLWQQNSRAYRDNHLLRKKLKE---LRRALEEVPKDDLVPCHNDLNPGNLLLTDK 170

Length = 269

>gnl|CDD|173576 PTZ00384, PTZ00384, choline kinase; Provisional

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 25/203 (12%)

Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAW--PAKNNGLARNVLVRIYGEGVEVFFNRDDE 85
           W +V  +   +++  +   +TN+VYQ       K+    ++V ++       +  + D +
Sbjct: 45  WNNVNPEF--IEIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQ 102

Query: 86  IRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHD-LK 144
               + +     GP+++GRFGD  ++E++   T+    +++  +   +A+ + +FH  + 
Sbjct: 103 YNIAKLLGDNNFGPKIIGRFGDFTIQEWVEGNTMGIDSLQNLSVLTGIASSLAKFHKRVT 162

Query: 145 MPGPRKALLWDR----LRKWVSVAKSFCS---AKDAKEFCLYTLKDEISMLEKELPNDH- 196
              P++   WDR    L K +S           K   +F    L     + +K L N+H 
Sbjct: 163 ELVPKE---WDRTPMFLTK-ISTWSQHVERIIKKYNLDFDYNELVQNYELFKKIL-NNHL 217

Query: 197 -------QEIGFCHNDLQYGNIM 212
                    + FCHNDL + NI+
Sbjct: 218 NTSNSITNSVLFCHNDLFFTNIL 240

Length = 383

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 66/184 (35%)

Query: 39  QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQG-Q 97
            +  LKG +TN VY +           + +++I     E   +R+ E+   + ++ +G  
Sbjct: 2   SIKLLKGGLTNRVYLL------GTKDEDYVLKINPSR-EKGADREREVAILQLLARKGLP 54

Query: 98  GPRLLGRFGDG----RVEEFIHARTLSAADIRD-PKISELVAAKMREFHDLKMPGPRKAL 152
            P++L           + E+I   TL      +   I+E +A  + + H L +       
Sbjct: 55  VPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAELLAKLHQLPLL------ 108

Query: 153 LWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIM 212
                                                            CH DL  GNI+
Sbjct: 109 -----------------------------------------------VLCHGDLHPGNIL 121

Query: 213 IDEE 216
           +D+ 
Sbjct: 122 VDDG 125

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 30/201 (14%)

Query: 40  VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQG- 98
           + PL G  +N  Y +             ++++     E       E+     +++ G   
Sbjct: 2   LRPLSGGASNRTYLVGTGD------GRYVLKLAPPA-EAAEELRRELALLRHLAAAGIPV 54

Query: 99  PRLLGRFGDGRVE-------EFIHARTLSAADIRD--PKISELVAAKMREFHDLKMP--- 146
           PR+L    DG          E +    L+          + E +A  +   H +      
Sbjct: 55  PRVLAGGTDGGGLGLPFLLMEGLPGEVLTRPLDPAERGALLEALARLLARLHSVPPEALP 114

Query: 147 ----GPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFC 202
                 R+  L  +L   +    +        E      +  ++ L   LP     +   
Sbjct: 115 LARRLRRRLKLLRQLAAALRRLVAAELLDRLAEL----WERLLAALLALLPA--LPLVLV 168

Query: 203 HNDLQYGNIMIDEETSSITII 223
           H DL  GN+++D       +I
Sbjct: 169 HGDLHPGNLLVDPGGRVTGVI 189

This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PLN02236	344	choline kinase	100.0
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	100.0
PTZ00296	442	choline kinase; Provisional	100.0
KOG4720	391	consensus Ethanolamine kinase [Lipid transport and	100.0
PTZ00384	383	choline kinase; Provisional	100.0
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	100.0
KOG2686	366	consensus Choline kinase [Cell wall/membrane/envel	100.0
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	100.0
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	99.98
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	99.97
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.93
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.92
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	99.92
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	99.91
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	99.9
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	99.9
PRK05231	319	homoserine kinase; Provisional	99.89
PF01636	239	APH: Phosphotransferase enzyme family This family	99.88
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	99.88
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	99.86
PRK09550	401	mtnK methylthioribose kinase; Reviewed	99.85
PRK12396	409	5-methylribose kinase; Reviewed	99.85
PRK11768	325	serine/threonine protein kinase; Provisional	99.84
PLN02876	822	acyl-CoA dehydrogenase	99.84
PLN02756	418	S-methyl-5-thioribose kinase	99.82
COG2334	331	Putative homoserine kinase type II (protein kinase	99.81
PRK10593	297	hypothetical protein; Provisional	99.81
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	99.79
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	99.77
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	99.76
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	99.75
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	99.73
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	99.72
PRK06148	1013	hypothetical protein; Provisional	99.72
PRK10271	188	thiK thiamine kinase; Provisional	99.71
PRK06149	972	hypothetical protein; Provisional	99.7
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	99.69
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.61
COG4857	408	Predicted kinase [General function prediction only	99.41
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.3
COG3231	266	Aph Aminoglycoside phosphotransferase [Translation	99.3
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	99.24
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	99.23
PRK14879	211	serine/threonine protein kinase; Provisional	99.23
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	99.19
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.19
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.1
KOG3087	229	consensus Serine/threonine protein kinase [General	98.95
COG3178	351	Predicted phosphotransferase related to Ser/Thr pr	98.92
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.91
TIGR02905	313	spore_yutH spore coat protein YutH. Members of thi	98.88
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.86
smart00090	237	RIO RIO-like kinase.	98.86
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.85
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.85
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.85
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	98.82
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.78
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.77
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.77
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.72
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.68
KOG3021	313	consensus Predicted kinase [General function predi	98.67
PRK09188	365	serine/threonine protein kinase; Provisional	98.65
TIGR02457	528	TreS_Cterm trehalose synthase-fused probable malto	98.56
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.54
PRK12274	218	serine/threonine protein kinase; Provisional	98.54
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.54
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.54
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.53
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.4
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.35
PLN00034	353	mitogen-activated protein kinase kinase; Provision	98.34
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.33
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.28
KOG0605	550	consensus NDR and related serine/threonine kinases	98.27
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.22
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.21
PRK09902	216	hypothetical protein; Provisional	98.18
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	98.17
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.16
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.12
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	98.12
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	98.1
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.08
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	98.08
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	98.08
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.07
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.07
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.07
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.04
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.04
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.04
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	98.04
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	98.04
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.04
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.03
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	98.03
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	98.02
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	98.02
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.02
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	98.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	97.99
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	97.99
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	97.99
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	97.99
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	97.98
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	97.98
KOG0610	459	consensus Putative serine/threonine protein kinase	97.98
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	97.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	97.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	97.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	97.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	97.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	97.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	97.95
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	97.95
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.94
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	97.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	97.94
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	97.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	97.93
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	97.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	97.92
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	97.92
PTZ00263	329	protein kinase A catalytic subunit; Provisional	97.92
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	97.91
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	97.9
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.89
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	97.89
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	97.89
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	97.89
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	97.88
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	97.88
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.88
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.87
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	97.87
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.87
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	97.87
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	97.86
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	97.86
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	97.85
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	97.85
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	97.85
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.85
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	97.84
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	97.84
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	97.84
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.83
PTZ00267	478	NIMA-related protein kinase; Provisional	97.82
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	97.81
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	97.81
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	97.81
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.81
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	97.81
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.8
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	97.8
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	97.78
KOG1187	361	consensus Serine/threonine protein kinase [Signal	97.77
COG3570	274	StrB Streptomycin 6-kinase [Defense mechanisms]	97.77
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	97.77
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	97.76
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	97.76
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	97.75
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	97.75
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	97.74
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	97.74
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	97.74
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	97.74
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	97.74
KOG0581	364	consensus Mitogen-activated protein kinase kinase	97.73
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	97.73
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.73
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	97.73
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	97.73
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	97.72
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	97.72
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	97.72
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	97.72
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	97.72
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	97.72
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	97.71
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	97.71
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	97.71
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	97.7
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.7
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	97.7
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	97.7
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.69
PRK14705	1224	glycogen branching enzyme; Provisional	97.68
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	97.68
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.67
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	97.67
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	97.67
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	97.67
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	97.66
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.66
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	97.65
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	97.65
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	97.65
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	97.65
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	97.64
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	97.64
KOG2270	520	consensus Serine/threonine protein kinase involved	97.63
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	97.63
KOG1989	738	consensus ARK protein kinase family [Signal transd	97.63
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	97.63
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	97.62
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	97.62
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	97.62
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	97.61
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	97.61
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	97.61
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	97.61
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	97.61
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.61
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	97.61
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	97.6
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	97.6
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	97.6
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	97.59
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	97.59
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	97.59
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	97.59
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	97.59
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	97.58
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	97.58
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	97.57
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	97.57
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	97.56
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	97.56
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	97.55
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	97.55
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	97.54
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.53
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	97.53
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	97.53
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	97.52
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	97.52
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	97.52
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	97.51
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.51
PTZ00036	440	glycogen synthase kinase; Provisional	97.51
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	97.51
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	97.5
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	97.5
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	97.49
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	97.49
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	97.49
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	97.49
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	97.48
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	97.48
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	97.48
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	97.47
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	97.47
PHA03209	357	serine/threonine kinase US3; Provisional	97.47
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	97.46
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	97.46
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	97.46
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	97.46
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	97.45
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	97.45
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	97.45
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	97.44
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	97.44
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	97.44
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	97.43
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.43
KOG0595	429	consensus Serine/threonine-protein kinase involved	97.43
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	97.43
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	97.43
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	97.42
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.42
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	97.42
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	97.42
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.42
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	97.42
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	97.41
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	97.41
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	97.41
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	97.41
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	97.41
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	97.41
PHA03211	461	serine/threonine kinase US3; Provisional	97.41
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	97.41
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	97.39
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	97.39
PLN00009	294	cyclin-dependent kinase A; Provisional	97.39
PTZ00284	467	protein kinase; Provisional	97.39
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	97.39
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	97.38
KOG0583	370	consensus Serine/threonine protein kinase [Signal	97.38
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	97.37
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	97.37
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	97.37
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	97.37
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	97.37
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	97.36
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	97.36
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	97.35
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	97.35
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	97.35
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	97.35
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	97.34
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	97.34
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	97.33
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	97.33
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	97.33
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	97.33
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	97.32
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	97.32
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	97.31
PHA03212	391	serine/threonine kinase US3; Provisional	97.3
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	97.3
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	97.3
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	97.29
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	97.29
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	97.26
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	97.26
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	97.26
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	97.25
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	97.25
PTZ00024	335	cyclin-dependent protein kinase; Provisional	97.25
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	97.25
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	97.24
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.23
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	97.23
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.22
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	97.2
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	97.2
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.19
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.19
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	97.19
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	97.18
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	97.18
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	97.18
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	97.17
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	97.17
KOG0578	550	consensus p21-activated serine/threonine protein k	97.16
PHA03207	392	serine/threonine kinase US3; Provisional	97.16
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	97.15
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	97.15
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	97.15
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	97.14
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	97.14
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	97.12
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	97.12
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	97.11
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	97.1
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	97.09
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	97.09
PHA02988	283	hypothetical protein; Provisional	97.08
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	97.07
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	97.07
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	97.06
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	97.04
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	97.04
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	97.02
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	97.02
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	97.02
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	97.01
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	97.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.99
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	96.97
PTZ00283	496	serine/threonine protein kinase; Provisional	96.95
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	96.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	96.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	96.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	96.92
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	96.89
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	96.85
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	96.83
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	96.82
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	96.81
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	96.78
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	96.78
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	96.77
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	96.76
COG2187	337	Uncharacterized protein conserved in bacteria [Fun	96.75
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	96.74
KOG0192	362	consensus Tyrosine kinase specific for activated (	96.72
KOG0598	357	consensus Ribosomal protein S6 kinase and related	96.71
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.66
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	96.65
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	96.63
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	96.61
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	96.61
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	96.59
PTZ00266	1021	NIMA-related protein kinase; Provisional	96.57
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	96.52
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	96.49
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	96.37
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	96.32
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.29
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	96.22
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.21
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	96.18
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	96.17
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.12
KOG3653	534	consensus Transforming growth factor beta/activin	96.1
KOG0694	694	consensus Serine/threonine protein kinase [Signal	96.07
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	95.99
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.94
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	95.92
KOG1152	772	consensus Signal transduction serine/threonine kin	95.92
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	95.84
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	95.82
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	95.71
KOG0596	677	consensus Dual specificity; serine/threonine and t	95.7
PHA02882	294	putative serine/threonine kinase; Provisional	95.35
KOG0582	516	consensus Ste20-like serine/threonine protein kina	95.3
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	95.28
KOG0607	463	consensus MAP kinase-interacting kinase and relate	95.19
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	95.14
COG3281	438	Ble Uncharacterized protein, probably involved in	95.09
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	95.06
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	94.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	94.88
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	94.73
PRK10345	210	hypothetical protein; Provisional	94.46
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	94.43
KOG0584	632	consensus Serine/threonine protein kinase [General	94.35
KOG0575	592	consensus Polo-like serine/threonine protein kinas	94.34
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	94.27
PHA03210	501	serine/threonine kinase US3; Provisional	94.26
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	94.19
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	94.15
KOG1167	418	consensus Serine/threonine protein kinase of the C	93.95
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	93.88
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	93.85
KOG2052	513	consensus Activin A type IB receptor, serine/threo	93.82
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.6
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	93.53
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	93.11
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	93.05
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	92.69
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	92.45
KOG0577	948	consensus Serine/threonine protein kinase [Signal	92.36
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	92.18
PLN03224	507	probable serine/threonine protein kinase; Provisio	91.88
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	91.61
KOG0198	313	consensus MEKK and related serine/threonine protei	91.55
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.29
PLN00181	793	protein SPA1-RELATED; Provisional	91.29
KOG2269	531	consensus Serine/threonine protein kinase [Signal	91.15
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	91.01
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	90.95
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	90.43
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	90.23
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	89.73
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	89.33
KOG0661	538	consensus MAPK related serine/threonine protein ki	88.77
PF10009	385	DUF2252: Uncharacterized protein conserved in bact	88.47
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	88.44
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	88.41
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	88.27
KOG0589	426	consensus Serine/threonine protein kinase [General	88.27
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	88.24
KOG0586	596	consensus Serine/threonine protein kinase [General	88.22
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	85.99
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	85.65
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	85.49
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	85.04
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	84.5
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	83.26
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	83.13
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	83.05
cd05170	307	PIKKc_SMG1 Suppressor of morphogenetic effect on g	82.4
cd00142	219	PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f	82.34
cd00892	237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	81.85
cd05171	279	PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat	81.57
cd05172	235	PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK)	81.39
KOG0590	601	consensus Checkpoint kinase and related serine/thr	80.84

>PLN02236 choline kinase

Probab=100.00  E-value=6.7e-40  Score=292.47  Aligned_cols=238  Identities=68%  Similarity=1.111  Sum_probs=203.5

Q ss_pred             CCcccccccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc
Q 024452            1 MAIKTTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF   80 (267)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~   80 (267)
                      |..||.|+-.--++..++++|.++.|.|.++.+ ++.+++++++||+||.+|+|+.+......+.+|++|++++++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~i   81 (344)
T PLN02236          3 MVEKTVGLSSGRIPDELKRILHSLASKWGDVVD-DEALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFF   81 (344)
T ss_pred             cccccccccCCCChHHHHHHHHHhcchhcCCCC-cCcEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeee
Confidence            567888887777899999999999999987643 4889999999999999999986431111247899999999888899


Q ss_pred             ChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 024452           81 NRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKW  160 (267)
Q Consensus        81 dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~  160 (267)
                      ||++|..+++.|++.|++|++++.+++|+|++|++|++++..++.++.+..++|+.|++||+...+....+.+++++..|
T Consensus        82 dR~~E~~~~~~l~~~gl~P~~~~~~~~g~v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~  161 (344)
T PLN02236         82 DRDDEIRTFECMSRHGQGPRLLGRFPNGRVEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNW  161 (344)
T ss_pred             chHHHHHHHHHHHHcCCCCceEEEECCceEEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Confidence            99999999999999999999999999899999999999999999999999999999999999987766567899999999


Q ss_pred             HHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          161 VSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      ..++.++......+..++..+..++++|++.+.....+.++||||++++|||++++++.+.+||||||++|+++||+|.
T Consensus       162 ~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~~~~Dia~  240 (344)
T PLN02236        162 LKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNPVAYDIAN  240 (344)
T ss_pred             HHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccccchHHHHHH
Confidence            9877655443322334567788888899887766677899999999999999986445799999999999999999775

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=100.00  E-value=3e-38  Score=280.51  Aligned_cols=217  Identities=27%  Similarity=0.512  Sum_probs=182.3

Q ss_pred             HHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCc
Q 024452           20 VLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGP   99 (267)
Q Consensus        20 l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P   99 (267)
                      +|++++|+|.++.  ++.+++++++||+||.+|+|+..+.. .+..+|++|+++++++.++||++|..+++.|++.|++|
T Consensus         1 ~~~~~~~~w~~~~--~~~i~i~~l~gGlTN~~~~v~~~~~~-~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~gl~P   77 (330)
T PLN02421          1 VCKALFKGWSDLD--DSDFSVERISGGITNLLLKVSVKEEN-GNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAGFGA   77 (330)
T ss_pred             CchHhCCccccCC--cCceEEEEeCCcccceEEEEEecCCC-CCCceEEEEEecCCcCeEechHHHHHHHHHHHhcCCCC
Confidence            4788999999874  48899999999999999999864311 11348999999998888899999999999999999999


Q ss_pred             eEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcc--cc---c
Q 024452          100 RLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAK--DA---K  174 (267)
Q Consensus       100 ~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~---~  174 (267)
                      ++++.+++|+|.+|++|++++..++.++.....+|+.|++||+...+....+.++..+.+|...+.......  ..   .
T Consensus        78 ~~l~~~~~G~i~~fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~  157 (330)
T PLN02421         78 KLLGVFGNGMIQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYE  157 (330)
T ss_pred             ceeEEeCCcEeehhhcCCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhc
Confidence            999999888999999999999888889889999999999999998876656789999999998875432111  11   1


Q ss_pred             ccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          175 EFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       175 ~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      ...+..+.+++..+++.+.....+.||||||++++|||++++++.+.+||||||++|+++||+|.
T Consensus       158 ~~~~~~l~~~~~~l~~~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~~fDIa~  222 (330)
T PLN02421        158 TISFEELRDEIVELKEITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYRGYDIGN  222 (330)
T ss_pred             ccCHHHHHHHHHHHHHHhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCCCccHHHHHH
Confidence            12356778888888877766678899999999999999986446799999999999999999886

>PTZ00296 choline kinase; Provisional

Probab=100.00  E-value=1.7e-36  Score=277.14  Aligned_cols=229  Identities=25%  Similarity=0.418  Sum_probs=186.9

Q ss_pred             ccccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCC----CCCceEEEEEcCCCcccccC
Q 024452            6 TELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNN----GLARNVLVRIYGEGVEVFFN   81 (267)
Q Consensus         6 ~~~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~----~~~~~~vlRi~~~~~~~~~d   81 (267)
                      .+.++.++++.+..+|++++|.|.++.  ++.+++.+++||+||.+|+|+.+.+.+    ..+.+|++|+++++++.++|
T Consensus        78 ~~~~~~~~~~~~~~i~~~~vp~W~~~~--~~~I~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lId  155 (442)
T PTZ00296         78 QEFSDLTDPLYIKKICLEKVPEWRRFT--EDDVRVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYN  155 (442)
T ss_pred             HhhcccCChHHHHHHHHHHCCccccCC--cccEEEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccceeC
Confidence            456788999999999999999999765  367899999999999999998653111    01468999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCC----C--CCCCchhHH
Q 024452           82 RDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM----P--GPRKALLWD  155 (267)
Q Consensus        82 r~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~----~--~~~~~~~~~  155 (267)
                      |..|..+++.|++.|++|++++.+++|+|.+|++|++++..++.++.+..++|+.|++||+...    +  ....|.+|+
T Consensus       156 R~~E~~v~~~ls~~gi~P~l~~~f~gg~I~efi~g~~l~~~dl~~~~~~~~iA~~L~~lH~~~~~~~~~~~f~~~p~~f~  235 (442)
T PTZ00296        156 PISEFEVYKTMSKYRIAPQLLNTFSGGRIEEWLYGDPLRIDDLKNPSILIGIANVLGKFHTLSRKRHLPEHWDRTPCIFK  235 (442)
T ss_pred             HHHHHHHHHHHHHCCCCCceEEEeCCCEEEEeeCCccCCHHHcCCHHHHHHHHHHHHHHhcccccccCchhccCCCcHHH
Confidence            9999999999999999999999999899999999999999899999999999999999999853    2  123456899


Q ss_pred             HHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC------CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          156 RLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP------NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       156 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~------~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+++|...+........ ...++..+.++++++.+.+.      ....+.||||||+.++|||..+  +.+.+||||||+
T Consensus       236 ~i~~~~~~~~~~~~~~~-~~~~~~~l~~e~~~l~~~l~~~~~l~~~~~~~VfCHNDl~~~NiL~~~--~~l~LIDfEYAg  312 (442)
T PTZ00296        236 MMEKWKNQLSKYKNIEK-YQRDIHKYIKESEKFIKFMKVYSKSDNLANDIVFCHNDLQENNIINTN--KCLRLIDFEYSG  312 (442)
T ss_pred             HHHHHHHHHHhhccchH-hHhhHHHHHHHHHHHHHHHHhhcccccccCCeeEEeCCCCccceeecC--CCEEEEeecccc
Confidence            99999987754322110 01134556666666655442      3466899999999999999864  469999999999


Q ss_pred             cchHhHHHHh
Q 024452          230 QNMLNFKRAC  239 (267)
Q Consensus       230 ~~~~~fD~A~  239 (267)
                      +++++||+|.
T Consensus       313 ~ndpafDIAn  322 (442)
T PTZ00296        313 YNFLATDIAN  322 (442)
T ss_pred             cccHHHHHHH
Confidence            9999999774

>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=255.90  Aligned_cols=237  Identities=28%  Similarity=0.481  Sum_probs=201.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHh
Q 024452           15 EELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSS   94 (267)
Q Consensus        15 ~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~   94 (267)
                      ..++++|..+.|.|..     ..+++..+++|++|..+.+....   .-...+++|+|+..++..+||++|+..++.|+.
T Consensus        66 ~ga~eLlk~Lrp~W~~-----~~v~~~~fs~gitNkL~~~~vg~---~~e~~v~vrvyg~~te~vIdre~Ev~afk~L~a  137 (391)
T KOG4720|consen   66 PGALELLKKLRPHWKP-----PEVTFKRFSDGITNKLFSCYVGE---NMEDHVLVRVYGHNTELVIDRENEVIAFKLLAA  137 (391)
T ss_pred             hhHHHHHHHhcccCCc-----cceeeeeeccchhHHHHHhhccc---ccceeEEEEeccCCCceeeccHHHHHHHHHHHH
Confidence            5589999999999994     77899999999999999986432   134789999999999999999999999999999


Q ss_pred             CCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCC-CCCchhHHHHHHHHHHHhhccCcc-c
Q 024452           95 QGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPG-PRKALLWDRLRKWVSVAKSFCSAK-D  172 (267)
Q Consensus        95 ~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~  172 (267)
                      +|++|++|+.+.+|++++||+|+++..+.+.+|.+.+.+|+.||+||+...++ .+.|.+|..+..|+.++.....++ .
T Consensus       138 ~G~ap~Ly~tF~NGLvyefi~g~tL~p~~mr~pki~~lIAr~mak~H~~~~~g~~pkp~lw~km~~f~~lv~~~f~de~~  217 (391)
T KOG4720|consen  138 YGFAPKLYGTFNNGLVYEFIQGKTLEPEHMREPKIFRLIARRMAKIHSIVATGGNPKPPLWEKMRKFLQLVPTSFEDEIN  217 (391)
T ss_pred             cCcChhhhheecCceEEeeecCcccChhhccChHHHHHHHHHHHHhheeccCCCCCCCcHHHHHHHHHHhcCchhhcccc
Confidence            99999999999999999999999999999999999999999999999998763 456789999999998876543322 1


Q ss_pred             ----ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh---------
Q 024452          173 ----AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC---------  239 (267)
Q Consensus       173 ----~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~---------  239 (267)
                          .+....+.|.+++.+|++.+...+.|.|||||||-++|||.++..+.+.+||||||+||+.+||++-         
T Consensus       218 kq~~~~~~~~~~L~~Ei~~l~E~l~~L~sPVVFcHNDLL~~Niiy~~~~~~v~fIDYEYa~yNY~afDIgNHFnE~aGv~  297 (391)
T KOG4720|consen  218 KQNLFDEPSPEDLGEEISKLKEMLSMLKSPVVFCHNDLLCGNIIYDSEKGSVEFIDYEYAGYNYQAFDIGNHFNEYAGVE  297 (391)
T ss_pred             hhhcccCCCHHHHHHHHHHHHHHHHhhCCCeEEeecchhhcceeeccccCcEEEEeecccccchhheehhhhHHhhcCCC
Confidence                1222568899999999999888899999999999999999998777899999999999999999762         


Q ss_pred             -hhhhheeeeccCCchhHhHHHHHHh
Q 024452          240 -TKILLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                       .||.++|..     +.-.-|+|-|.
T Consensus       298 evDYSlyp~r-----E~Q~qwl~~YL  318 (391)
T KOG4720|consen  298 EVDYSLYPTR-----EEQLQWLRDYL  318 (391)
T ss_pred             ccchhcCCCH-----HHHHHHHHHHH
Confidence             566666532     33456777764

>PTZ00384 choline kinase; Provisional

Probab=100.00  E-value=1.4e-34  Score=260.43  Aligned_cols=223  Identities=19%  Similarity=0.325  Sum_probs=176.2

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCC--CCceEEEEEcCCCcccccChHHHHHHH
Q 024452           12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNG--LARNVLVRIYGEGVEVFFNRDDEIRTF   89 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~--~~~~~vlRi~~~~~~~~~dr~~E~~~~   89 (267)
                      -+...++.+|++++|.|+++.  ++.+++++++||+||.+|+|+.+...+.  ....+++|+++.++..++||++|.+++
T Consensus        29 ~~~~~~~~~~~~~~p~w~~~~--~~~i~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~  106 (383)
T PTZ00384         29 HSHSNLKSLCIRHVPFWNNVN--PEFIEIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIA  106 (383)
T ss_pred             ccHHHHHHHHHHHCCccccCC--cccEEEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHH
Confidence            345789999999999999874  4889999999999999999986431100  012488999988888899999999999


Q ss_pred             HHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCC---C--CCCchhHHHHHHHHHHH
Q 024452           90 ECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP---G--PRKALLWDRLRKWVSVA  164 (267)
Q Consensus        90 ~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~---~--~~~~~~~~~l~~~~~~~  164 (267)
                      +.|++.|++|++++.+++|+|++||+|++++..++.++.+...+|+.|++||+...+   .  ...|..+..+..|...+
T Consensus       107 ~~Ls~~glgP~l~~~f~~g~l~efIeGr~l~~~dl~~p~~~~~IA~~La~lH~~~~~~~p~~~~~~p~~~~~i~~w~~~~  186 (383)
T PTZ00384        107 KLLGDNNFGPKIIGRFGDFTIQEWVEGNTMGIDSLQNLSVLTGIASSLAKFHKRVTELVPKEWDRTPMFLTKISTWSQHV  186 (383)
T ss_pred             HHHHhCCCCCeEEEecCCEEEEEEeccccCChhHhcCHHHHHHHHHHHHHHhcccccCCCccccCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998532   1  12345677888887665


Q ss_pred             hhccCcccccccchhhHHHHHHHHHHhCC-------CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHH
Q 024452          165 KSFCSAKDAKEFCLYTLKDEISMLEKELP-------NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKR  237 (267)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~-------~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~  237 (267)
                      .+..... ...+++..+.++++.+++.+.       ....+.||||||++++|||.++  +.+.+||||||++|+++||+
T Consensus       187 ~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~~VfCHNDL~~gNIL~~~--~~l~lID~EYA~~n~~~fDL  263 (383)
T PTZ00384        187 ERIIKKY-NLDFDYNELVQNYELFKKILNNHLNTSNSITNSVLFCHNDLFFTNILDFN--QGIYFIDFDFAGFNYVGWEI  263 (383)
T ss_pred             HHHHHhh-ccccCHHHHHHHHHHHHHHHHHhhccccccccceeeeeccCCcccEEecC--CCEEEEEeccccCCchHhHH
Confidence            4321110 012345556666666544432       1245799999999999999864  47999999999999999997


Q ss_pred             Hh
Q 024452          238 AC  239 (267)
Q Consensus       238 A~  239 (267)
                      |.
T Consensus       264 An  265 (383)
T PTZ00384        264 AN  265 (383)
T ss_pred             HH
Confidence            74

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=100.00  E-value=1.3e-33  Score=239.22  Aligned_cols=199  Identities=33%  Similarity=0.574  Sum_probs=160.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCC
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHAR  117 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~  117 (267)
                      ++++++.+|++|.+|+|+....   ++++|++|++++.+...++|++|..+++.+++.|++|++++..+++++++|++|+
T Consensus         1 ~~i~~l~gG~tN~~~~v~~~~~---~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl~P~v~~~~~~~~l~e~i~G~   77 (235)
T cd05157           1 ITFKRFTGGITNKLVKVSNKED---NQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGLAPKLYATFQNGLIYEFIPGR   77 (235)
T ss_pred             CeEEEcCCcccceEEEEEcCCC---CCCeEEEEEccCCccceecHHHHHHHHHHHHhCCCCCeEEEEeCCcEEEEeeCCC
Confidence            4689999999999999975310   1479999999887777789999999999999999999999888888999999999


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCC------CCchhHHHHHHHHHHHhhccCccc-----ccccchhhHHHHHH
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGP------RKALLWDRLRKWVSVAKSFCSAKD-----AKEFCLYTLKDEIS  186 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~  186 (267)
                      +++...+.++.+..++|+.|++||+...+..      ..+..++.+..|...+........     ......+.+.+.+.
T Consensus        78 ~l~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  157 (235)
T cd05157          78 TLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFEQLRDEIS  157 (235)
T ss_pred             cCCHHHccChHHHHHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHhHHhhccccchhhhhccccHHHHHHHHH
Confidence            9988878888899999999999999987542      234577888888776543211100     01224567777778


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      ++++.+.....+.++||||++++|||++++++.+.+||||+|++|++.||+|+
T Consensus       158 ~l~~~l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~~~Dla~  210 (235)
T cd05157         158 WLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYRAFDIAN  210 (235)
T ss_pred             HHHHHhcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCchheeHHH
Confidence            88877765567899999999999999996235799999999999999999876

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.1e-33  Score=242.02  Aligned_cols=224  Identities=36%  Similarity=0.604  Sum_probs=189.7

Q ss_pred             ChHHHHHHHHHhCC-CCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCcccccChHHHHHH
Q 024452           13 SPEELKKVLQSVAS-DWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVEVFFNRDDEIRT   88 (267)
Q Consensus        13 ~~~~~~~l~~~~~p-~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~~~~dr~~E~~~   88 (267)
                      ....+.++|...+| .|+++..  +..+++.+++|.+|.+|.++.+...   .....++++|||+++.. +.+|..|..+
T Consensus        19 ~~~~~~~~~~~~l~~~w~~v~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~-~~~~~~Esv~   95 (366)
T KOG2686|consen   19 ILPRAKELCAQYLGGAWRDVIN--EEQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYGQGVD-FSQRETESVM   95 (366)
T ss_pred             ccHHHHHHHHHHhhhHHhhhhh--hhheeeeccCCCcceEEEEecCcccCCcccccceeEEEEecCCcc-HHHhhhHHHH
Confidence            44668888888886 6999874  6688999999999999999875422   12346899999998765 7788899999


Q ss_pred             HHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCc-hhHHHHHHHHHHHhhc
Q 024452           89 FECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSF  167 (267)
Q Consensus        89 ~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~-~~~~~l~~~~~~~~~~  167 (267)
                      ++.++++|++|++++.+++|++.+||+.++++..++.++++...+|+.++++|++.+|.++.+ ..|+.+++|..+..++
T Consensus        96 fa~lSer~lGPkL~G~F~~GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~~~p~~ke~~~~~~~~~~wl~~~~~~  175 (366)
T KOG2686|consen   96 FAILSERGLGPKLYGFFSGGRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGIEVPGPKEPRSLWERYKKWLKGAKKI  175 (366)
T ss_pred             HHHHhhcCCCcceeeecCCccHhhhccccccchHhhcchhHHHHHHHHHHHhcCCcCCCCccHHHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999988776 7999999999988776


Q ss_pred             cCccc-----ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          168 CSAKD-----AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       168 ~~~~~-----~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      +....     .+.+....+..+++.++++.+..+.+.||||||++.||||+.++.+.+++||||||++|+++||+|.
T Consensus       176 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv~IDfEYasyN~r~fDlan  252 (366)
T KOG2686|consen  176 KPTEVSYSCGPDKLEIEDLLLELSLFRKWSELTKSPVVFCHNDLQYGNILLLNSTKELVLIDFEYASYNPRGFDLAN  252 (366)
T ss_pred             CCCccchhcccchhhHHHHHHHHHHHHHHHhcCCCCeeeecccccccceeeecCCCceeEEeeccccCCchhhhHHH
Confidence            54331     1222345667777888887744678899999999999999987667899999999999999999874

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=100.00  E-value=1.4e-31  Score=235.15  Aligned_cols=201  Identities=32%  Similarity=0.591  Sum_probs=150.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCC--CCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecC
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN--NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHA  116 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~--~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G  116 (267)
                      ++++++||+||.+|+|+.....  ...+.+||+|+++......++|.+|.++++.|++.|++|++++.+++++|++|++|
T Consensus         2 ~i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~~~v~e~i~G   81 (302)
T cd05156           2 EVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNLGPKLYGIFPNGRIEEFIPS   81 (302)
T ss_pred             eEEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhCCCCCceEEEeCCCchhheeCC
Confidence            6899999999999999854200  01247999999988776678999999999999999999999999998899999999


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCC-C----CCchhHHHHHHHHHHHhhccCcc-----cccccchhhHHHHHH
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPG-P----RKALLWDRLRKWVSVAKSFCSAK-----DAKEFCLYTLKDEIS  186 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~  186 (267)
                      +++....+.++.+..++|+.|++||+...+. .    ..+..+..+..|...........     .........+...+.
T Consensus        82 ~~l~~~~~~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T cd05156          82 RTLTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLLEVELSLFLEDEA  161 (302)
T ss_pred             CcCCHhHcCCcHHHHHHHHHHHHhhCCCCCCCCCcCcccchHHHHHHHHHHHhhhhhhhcccchhhhhhhhHHHHHHHHH
Confidence            9988777778889999999999999997753 1    22346667777766543321110     000011222333333


Q ss_pred             HHHHhCCC-----CCCcEEEEccCCCCCCeeeeCC---CCCEEEEeecccCcchHhHHHHh
Q 024452          187 MLEKELPN-----DHQEIGFCHNDLQYGNIMIDEE---TSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       187 ~l~~~l~~-----~~~~~~l~H~Dl~~~Nilv~~~---~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      .+.+.+..     ...+.++||||++++|||++++   ++.+.+||||||++|+++||+|.
T Consensus       162 ~~~~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p~~DlA~  222 (302)
T cd05156         162 KYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYRGFDIAN  222 (302)
T ss_pred             HHHHHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCcHHHHHH
Confidence            33333321     3478999999999999999863   25799999999999999999775

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=99.98  E-value=6.6e-32  Score=225.58  Aligned_cols=176  Identities=36%  Similarity=0.585  Sum_probs=135.4

Q ss_pred             CceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccC
Q 024452           64 ARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDL  143 (267)
Q Consensus        64 ~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~  143 (267)
                      +.+|++|+++.++..++||+.|..+++.|++.|++|++++.+++|+|++|++|++++..++.++.+...+|+.|++||+.
T Consensus         2 ~~~~~~Ri~g~~t~~~idr~~E~~~~~~l~~~g~~p~~~~~~~~g~v~e~i~g~~l~~~~~~~~~~~~~iA~~l~~lH~~   81 (211)
T PF01633_consen    2 PEKYLVRIPGEGTENFIDRENENEALKLLSEAGLGPKIIYFFENGRVEEFIEGRTLSPEDFRNPEILKRIAKLLAKLHSI   81 (211)
T ss_dssp             TSEEEEEEEESCGCSHHHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--SSEE--CGGGGSHHHHHHHHHHHHHHHTH
T ss_pred             CCEEEEEeCCCCcccccCHHHHHHHHHHHHHcCCCCeEEEEcCCCcEEEEecccccChhhccChHHHHHHHHHHHHHhhc
Confidence            47999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCchhHHHHHHHHHHHhhccCc-----ccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCC
Q 024452          144 KM-PGPRKALLWDRLRKWVSVAKSFCSA-----KDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEET  217 (267)
Q Consensus       144 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~  217 (267)
                      .. +....+.+++.+..|..........     .......+..+.++++.+++.+.....+.||||||++++|||++.++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~v~cHnDl~~~Nil~~~~~  161 (211)
T PF01633_consen   82 PISPNSKKPDLWDRIDKYMNKKSEFLFKRKKKKKSIDKEDLEDLQEELEELEKLLEKSNSPLVFCHNDLNPGNILINNKD  161 (211)
T ss_dssp             HHTTSSSS-HHHHHHHHHHHHHHTCCCCHHTTTCHHHHHHHHHHHHHHHHHHHHHHTSCGGEEEE-S--SGGGEEETSSS
T ss_pred             ccccccCcchHHHHhhhhccchhhhhhhhhhhccccccCCHHHHHHHHhhhhhhhhccCCCceEeeccCccccEEeccCC
Confidence            87 4444567899999993222211111     00112245677888888888776677889999999999999993335


Q ss_pred             CCEEEEeecccCcchHhHHHHh
Q 024452          218 SSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       218 ~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      +.+.+||||||++|+++||+|.
T Consensus       162 ~~~~lIDfEya~~n~~~fDia~  183 (211)
T PF01633_consen  162 GEVKLIDFEYAGYNDRAFDIAN  183 (211)
T ss_dssp             SCEEE--GTT-EEEEHHHHHHH
T ss_pred             CeEEEecHHHHhhccchhhHHH
Confidence            7899999999999999999886

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>TIGR02721 ycfN_thiK thiamine kinase

Probab=99.97  E-value=3.1e-30  Score=221.60  Aligned_cols=182  Identities=13%  Similarity=0.105  Sum_probs=142.8

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCC
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL  119 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l  119 (267)
                      .++++|.+|.+|+++.      ++.+||+|++++....+ +||++|.++++.+++.|++|++++.+++++|++||+|+++
T Consensus         2 ~~~~~G~tn~~y~~~~------~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~~~~v~e~i~G~~~   75 (256)
T TIGR02721         2 QTLSGGLTNRSWRIEH------PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVNEHWLLVEWLEGEVI   75 (256)
T ss_pred             CcCCCcCcCCeEEEEe------CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEeCCEEEEEeccCccc
Confidence            4678999999999974      24799999987765554 7999999999999999999999999988899999999999


Q ss_pred             CcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcE
Q 024452          120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEI  199 (267)
Q Consensus       120 ~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~  199 (267)
                      +...+.++....++|+.|++||+.+.+... .++...+..|..++....        ..+.+...++.+.......+.+.
T Consensus        76 ~~~~~~~~~~~~~la~~l~~lH~~~~~~~~-~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  146 (256)
T TIGR02721        76 TLDQFVALDLLLELAALLHQLHSQPRFGYP-LSLKARIAHYWLQIDPAR--------RTPEWLRLYKQFRSAPEPAPLPL  146 (256)
T ss_pred             ccccccCchhHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHHHhccccc--------CChHHHHHHHHHHhccCCCCCCC
Confidence            877666778899999999999999875432 345566666665442210        01233334444444333345688


Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      ++||||++++|||++++  +++|||||+|++|+++||+|.
T Consensus       147 ~l~H~Dl~~~Nil~~~~--~~~lIDwE~a~~gdp~~DLa~  184 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQ--GLKLIDWEYASDGDIALELAA  184 (256)
T ss_pred             eeecCCCCcCcEEEeCC--CCEEEeccccCcCCHHHHHHH
Confidence            99999999999999864  489999999999999999886

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.93  E-value=1.3e-24  Score=174.64  Aligned_cols=163  Identities=28%  Similarity=0.376  Sum_probs=130.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--CeeEEEeecC
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DGRVEEFIHA  116 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~~v~e~i~G  116 (267)
                      .++++.+|.+|.+|+++..      +++|++|++.++.....+++.|+.+++.+++.+++|+++..+.  ..+|++|++|
T Consensus         2 ~~~~l~~G~~~~vy~~~~~------~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G   75 (170)
T cd05151           2 HISPLKGGMTNKNYRVEVA------NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEG   75 (170)
T ss_pred             ceeecCCcccCceEEEEEC------CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCC
Confidence            5889999999999999853      4799999987665445677899999999999999999999876  4499999999


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      +++.......+....++++.|++||+...+                                                  
T Consensus        76 ~~l~~~~~~~~~~~~~l~~~l~~LH~~~~~--------------------------------------------------  105 (170)
T cd05151          76 SELLTEDFSDPENLEKIAKLLKKLHSSPLP--------------------------------------------------  105 (170)
T ss_pred             CccccccccCHHHHHHHHHHHHHHhCCCCC--------------------------------------------------
Confidence            988765455667788999999999997542                                                  


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhheeeeccCCchhHhHHHHHHhh
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILCL  265 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (267)
                       +.++||||++++|||+++  +.+.+||||+|+++++.+|+|.+-    ...+.+..+ ...++.-|+.
T Consensus       106 -~~~~~HgD~~~~Nil~~~--~~~~liDf~~a~~~~~~~Dla~~~----~~~~~~~~~-~~~~~~~y~~  166 (170)
T cd05151         106 -DLVPCHNDLLPGNFLLDD--GRLWLIDWEYAGMNDPLFDLANFF----SEAKLSEDQ-EEELLEAYFG  166 (170)
T ss_pred             -CceeecCCCCcCcEEEEC--CeEEEEecccccCCChHHHHHHHH----HhcCCCHHH-HHHHHHHHhC
Confidence             778999999999999983  579999999999999999987632    122222222 5556666654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.92  E-value=1e-23  Score=176.19  Aligned_cols=190  Identities=16%  Similarity=0.205  Sum_probs=138.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCC-CceEEEEECC-------e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQ-GPRLLGRFGD-------G  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~~-------~  108 (267)
                      +++++.+|.+|.+|+|+..     ++..|++|+......  ...+..+|+++++.+++.|+ +|+++....+       .
T Consensus         2 ~~~~l~~G~~n~~~~v~~~-----~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~   76 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAG-----GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPF   76 (223)
T ss_pred             cceecCCCccceEEEEEec-----CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCce
Confidence            5788999999999999863     247999999876532  23345799999999999987 7999887653       3


Q ss_pred             eEEEeecCCCCCcccC---CC----hHHHHHHHHHHHhhccCCCCCCCC-------chhHHHHHHHHHHHhhccCccccc
Q 024452          109 RVEEFIHARTLSAADI---RD----PKISELVAAKMREFHDLKMPGPRK-------ALLWDRLRKWVSVAKSFCSAKDAK  174 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l---~~----~~i~~~la~~La~lH~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~  174 (267)
                      +|++|++|.++.....   .+    ..++.++|+.|++||+...+....       ......+..|...+.+....    
T Consensus        77 ~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  152 (223)
T cd05154          77 YVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTD----  152 (223)
T ss_pred             EEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccc----
Confidence            8999999998876432   12    246889999999999987643211       12445666676655433211    


Q ss_pred             ccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccCcchHhHHHHhh
Q 024452          175 EFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       175 ~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                        ....+....+++++... ...+.++||||++++|||++++ ++.++|||||+|++|++.||+|.+
T Consensus       153 --~~~~~~~~~~~~~~~~~-~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~~~Dla~~  216 (223)
T cd05154         153 --EPPAMERLLRWLEAHLP-ADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLADLGWL  216 (223)
T ss_pred             --ccHHHHHHHHHHHhhCC-CCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccCChHHHHHHH
Confidence              11344555566665543 2368999999999999999873 245789999999999999998764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=99.92  E-value=3.3e-24  Score=180.75  Aligned_cols=176  Identities=16%  Similarity=0.158  Sum_probs=121.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEECC----eeEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~~----~~v~e~  113 (267)
                      .+++|.+|.||.+|+..        ++++|+|++.+... ..+..+|+++++.++..|+ +|++++..++    ++|++|
T Consensus         5 ~~~~i~~G~t~~~y~~~--------~~~~VlR~~~~~~~-~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~   75 (226)
T TIGR02172         5 DWTQTGEGGNGESYTHK--------TGKWMLKLYNPGFD-KETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYEL   75 (226)
T ss_pred             HheeecCCCCcceeEec--------CCCEEEEeCCCCCC-HHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeee
Confidence            45789999999999852        36899999876542 2234689999999999998 6999998653    589999


Q ss_pred             ecCCCCCcccCC-----ChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH-HH
Q 024452          114 IHARTLSAADIR-----DPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI-SM  187 (267)
Q Consensus       114 i~G~~l~~~~l~-----~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~  187 (267)
                      |+|++.....+.     .+.+...+|+.+++||+.+.+....+...+.+..+++   +...       ....+.+.+ +.
T Consensus        76 i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~---~~~~-------~~~~~~~~l~~~  145 (226)
T TIGR02172        76 IVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIE---EKDF-------VPKDYKEKARAF  145 (226)
T ss_pred             cCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---hccC-------CCHHHHHHHHHH
Confidence            999852211111     1357889999999999987654322233333333332   1110       011122222 22


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      +.    ..+.+.++||||++++|||++++ + ++|||||+|++|++.+|+|.
T Consensus       146 l~----~~~~~~~~~HgD~~~~Nii~~~~-~-~~iIDwe~a~~Gdp~~Dla~  191 (226)
T TIGR02172       146 IK----EVPDTSTCLHGDFQIGNLITSGK-G-TYWIDLGDFGYGNPLFDLGL  191 (226)
T ss_pred             HH----hCCCCCceEecCCCCCcEEEcCC-C-cEEEechhcCcCCHHHHHHH
Confidence            22    22455678999999999999863 4 99999999999999999887

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=99.91  E-value=3.7e-23  Score=181.12  Aligned_cols=227  Identities=14%  Similarity=0.093  Sum_probs=142.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHh
Q 024452           15 EELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSS   94 (267)
Q Consensus        15 ~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~   94 (267)
                      +++..++..+-.        .+..++.++.+|.+|.+|++.+.      ++++|+|++......  +...|++++++|++
T Consensus         2 ~~l~~~l~~y~~--------~~~~~i~~i~~G~~n~~y~v~~~------~~~~vLr~~~~~~~~--~~~~e~~~l~~L~~   65 (296)
T cd05153           2 EELASFLADYDL--------GELLSFEGISAGIENTNYFVTTD------SGRYVLTLFEKVSAE--ELPFFLALLDHLAE   65 (296)
T ss_pred             HHHHHHHHHcCC--------CchhheecccCccccceEEEEeC------CCcEEEEEcCCCChH--hccHHHHHHHHHHH
Confidence            455555555521        14467999999999999999753      368999998753222  23589999999999


Q ss_pred             CCC-CceEEEEEC--------C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHH
Q 024452           95 QGQ-GPRLLGRFG--------D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSV  163 (267)
Q Consensus        95 ~gl-~P~v~~~~~--------~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~  163 (267)
                      .|+ +|+++....        +  ..|++|++|+.+..   .++....++|+.|++||........... ......|...
T Consensus        66 ~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~G~~~~~---~~~~~~~~lg~~La~lH~~~~~~~~~~~-~~~~~~~~~~  141 (296)
T cd05153          66 RGLPVPRPIADRDGEYLSELAGKPAALVEFLAGEHLTR---PTAAHCRQIGEALARLHLAAQSFPGERN-NLRGLAWIRE  141 (296)
T ss_pred             CCCCCCccccCCCCcEeeeeCCceEEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCccCC-CcCCcHHHHH
Confidence            996 588776422        1  17899999998765   3467789999999999998653321100 0011123322


Q ss_pred             HhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhh
Q 024452          164 AKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKIL  243 (267)
Q Consensus       164 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~  243 (267)
                      ........ ...-....+...++.+++. .....+.++||||++++|+|++++ +.++|||||+|++|++.||+|.+-..
T Consensus       142 ~~~~~~~~-l~~~~~~~~~~~~~~l~~~-~~~~~~~~l~HgD~~~~Nil~~~~-~~~~iIDfe~a~~g~~~~Dla~~~~~  218 (296)
T cd05153         142 LGKDLLPL-LSAEDRALLADELARQDAF-DPSDLPRGVIHADLFRDNVLFDGD-ELSGVIDFYFACTDAFLYDLAITLND  218 (296)
T ss_pred             HHHHhccc-cCHHHHHHHHHHHHHHHhh-hhhcCCCcCCccCcCcccEEEeCC-ceEEEeehhhhcCchHHHHHHHHHHH
Confidence            21111000 0000123344445555543 223567899999999999999963 45689999999999999997753221


Q ss_pred             -heeeeccCCchhHhHHHHHHh
Q 024452          244 -LILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       244 -~~~~~~~~~~~~~~~~~~~~~  264 (267)
                       ++.....-.......++++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~l~gY~  240 (296)
T cd05153         219 WCFDEDGALDPERAQALLAGYQ  240 (296)
T ss_pred             HHhCccCCCCHHHHHHHHHHHH
Confidence             121111112233556677775

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=99.90  E-value=2.2e-22  Score=171.54  Aligned_cols=196  Identities=14%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             EEEEecCcee-eeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           39 QVIPLKGAMT-NEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~-N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ++.+|+.|.+ |.+|++...      +.++++|+.....  ..+..+|+++++.+++.+.+|+++...+.    .+|++|
T Consensus         2 ~~~~~~~g~~~~~v~~~~~~------~~~~~vk~~~~~~--~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~   73 (244)
T cd05150           2 RWERVTEGQSGATVYRLDGK------NPGLYLKIAPSGP--TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSA   73 (244)
T ss_pred             cceecCCCCCcCeEEEEcCC------CCcEEEEecCCCc--ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEe
Confidence            4567877776 899999632      3689999975543  22446899999999988778999998753    389999


Q ss_pred             ecCCCCCccc--CCChHHHHHHHHHHHhhccCCCCCCCCch-hHHHHHHHHHHHhhccCccc-cc-ccchhhHHHHHHHH
Q 024452          114 IHARTLSAAD--IRDPKISELVAAKMREFHDLKMPGPRKAL-LWDRLRKWVSVAKSFCSAKD-AK-EFCLYTLKDEISML  188 (267)
Q Consensus       114 i~G~~l~~~~--l~~~~i~~~la~~La~lH~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~l  188 (267)
                      ++|+++....  ...+.+..++|+.+++||+++.+...... ....+..+...+.+...... .. ........+..+++
T Consensus        74 i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  153 (244)
T cd05150          74 VPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAEL  153 (244)
T ss_pred             eCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHH
Confidence            9999886533  33356899999999999998764322111 11222222221111100000 00 00011234444555


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhh
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILL  244 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~  244 (267)
                      .+... ...+.+|||||++++|||+++ ++.++|||||+|++|++.+|+|.+-..+
T Consensus       154 ~~~~~-~~~~~~l~HgD~~~~Nil~~~-~~~~~iIDwe~a~~gdp~~Dla~~~~~~  207 (244)
T cd05150         154 EATRP-AEEDLVVTHGDACLPNIIVDP-GKFSGFIDLGRLGVADRYQDLALAVRSL  207 (244)
T ss_pred             HhhCC-CcCceEEECCCCCCccEEEeC-CcEEEEEEccccccccHHHHHHHHHHHh
Confidence            54432 356799999999999999997 3557899999999999999988755443

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=99.90  E-value=3e-22  Score=176.51  Aligned_cols=209  Identities=18%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHH
Q 024452           12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFEC   91 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~   91 (267)
                      -+++++.+++..+     ++   .+..++.++.+|.+|.+|+|++.      +++||+|++...... -....|.+++++
T Consensus         7 ~~~~~l~~~l~~y-----~~---~~~~~i~~~~~G~~n~~y~v~t~------~~~~vLK~~~~~~~~-~~i~~e~~~l~~   71 (307)
T TIGR00938         7 VSDEEMSSFLDGY-----DL---GELLSLKGIAEGVENSNYLLTTD------VGRYILTLYEKRVKA-EELPFFLALTTH   71 (307)
T ss_pred             CCHHHHHHHHHhc-----CC---CCceeccccCCccccceEEEEeC------CCcEEEEEecCCCCH-HHHHHHHHHHHH
Confidence            4568888888866     22   14568999999999999999853      368999998653211 112478899999


Q ss_pred             HHhCCC-CceEEEEEC-------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 024452           92 MSSQGQ-GPRLLGRFG-------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKW  160 (267)
Q Consensus        92 l~~~gl-~P~v~~~~~-------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~  160 (267)
                      |++.|+ +|+++....       +|   .+++|++|+.+...   ++...+++|+.||+||..................|
T Consensus        72 L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e~i~G~~~~~~---~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w  148 (307)
T TIGR00938        72 LAARGLPVPKPVKSRDGRQLSTLAGKPACLVEFLQGLSVGRP---TAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAW  148 (307)
T ss_pred             HHHCCCCCCccccCCCCCeehhcCCeEEEEEEeCCCCCCCCC---CHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHH
Confidence            999997 588876432       12   68999999887642   45668999999999999865332111100012334


Q ss_pred             HHHHhhccCccc-ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          161 VSVAKSFCSAKD-AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       161 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      ............ .+.-....+.+.++.+.... ....+.++||||++++||+++++ +.+.|||||+|+++++.||+|.
T Consensus       149 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~-~~~~~~~l~HgD~~~~Nvl~~~~-~~~~vIDfd~~~~~~~~~DLA~  226 (307)
T TIGR00938       149 HILAEKCFEAAPQLEAHMGAELDKELDYLDKFW-PRDLPRGVIHADLFPDNVLFDGD-SVKGVIDFYFACTDARAYDLAI  226 (307)
T ss_pred             HHHHHhhhhcccccCHHHHHHHHHHHHHHHhhh-hhcCCCccCCCCCCcCcEEEECC-ceEEEeecccccCcchHHHHHH
Confidence            322211100000 00001223344445454322 23567899999999999999874 4468999999999999999776


Q ss_pred             h
Q 024452          240 T  240 (267)
Q Consensus       240 ~  240 (267)
                      +
T Consensus       227 ~  227 (307)
T TIGR00938       227 T  227 (307)
T ss_pred             H
Confidence            4

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK05231 homoserine kinase; Provisional

Probab=99.89  E-value=4.6e-22  Score=176.07  Aligned_cols=207  Identities=15%  Similarity=0.149  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHH
Q 024452           12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFEC   91 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~   91 (267)
                      .+++++.++++.+ . ..      +..+++++.+|..|.+|+|++.      +++||+|++......  ....|..++++
T Consensus         7 ls~~~l~~~l~~y-~-~~------~~~~~~~l~~G~~n~~y~v~t~------~g~~vLK~~~~~~~~--~l~~~~~~l~~   70 (319)
T PRK05231          7 VSDDELAAFLAPY-D-LG------ELLSLKGIAEGIENSNFFLTTT------QGEYVLTLFERLTAE--DLPFFLGLMQH   70 (319)
T ss_pred             CCHHHHHHHHHhc-C-Cc------hhhccchhccccccceEEEEeC------CCcEEEEEeccCChH--HhHHHHHHHHH
Confidence            4677788888554 2 11      3457889999999999999853      368999998622211  22468899999


Q ss_pred             HHhCCC-CceEEEEEC-------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 024452           92 MSSQGQ-GPRLLGRFG-------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKW  160 (267)
Q Consensus        92 l~~~gl-~P~v~~~~~-------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~  160 (267)
                      |++.|+ +|+++....       +|   .+++|++|+....   .++..++++|+.||+||...............+..|
T Consensus        71 L~~~glpvP~~i~~~~G~~~~~~~g~~~~l~~~l~G~~~~~---~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~  147 (319)
T PRK05231         71 LAARGVPVPAPVARRDGAALGELAGKPAAIVTFLEGKWPRA---PTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWW  147 (319)
T ss_pred             HHHCCCCCCcceeCCCCCEeeeeCCEEEEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHH
Confidence            999997 588875321       12   7899999987653   245668899999999999865432111000112223


Q ss_pred             HHHHhhccCcccccccchhhHHHHHHHHHHhCCC---CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHH
Q 024452          161 VSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN---DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKR  237 (267)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~---~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~  237 (267)
                      .....+......  .-....+...++.+.+.+..   ...+.++||||++++|||+++ ++.++|||||+|+++++.||+
T Consensus       148 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~lp~~liHgD~~~~Nil~~~-~~~~~iIDf~~~~~~~~~~Dl  224 (319)
T PRK05231        148 RELAPRLLPFLA--DEQAALLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEG-DRLSGFIDFYFACNDKLLYDV  224 (319)
T ss_pred             HHHHHHHhhccC--hhHHHHHHHHHHHHHHhhhccccccCCcccCCCCCCCCcEEEEC-CceEEEEecccccCCchHHHH
Confidence            222222110000  00012233333333333321   236789999999999999985 344589999999999999997


Q ss_pred             Hhh
Q 024452          238 ACT  240 (267)
Q Consensus       238 A~~  240 (267)
                      |.+
T Consensus       225 A~~  227 (319)
T PRK05231        225 AIT  227 (319)
T ss_pred             HHH
Confidence            743

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=99.88  E-value=1.4e-22  Score=170.22  Aligned_cols=195  Identities=21%  Similarity=0.247  Sum_probs=119.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEEC----Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFG----DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~----~~---~v  110 (267)
                      +++++++|.+|.+|+|+..      ++++++|++... ........|..++++|++.|+ +|+++....    .+   .+
T Consensus         1 ~i~~l~~G~~n~~~~v~~~------~~~~vlK~~~~~-~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~   73 (239)
T PF01636_consen    1 HIRPLSGGFSNRVYRVTTD------DGRYVLKFYRPP-DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLL   73 (239)
T ss_dssp             -EEEEEESSSSEEEEEEET------TSEEEEEEESSH-HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEE
T ss_pred             CCccCCCCCeeeEEEEEEC------CcEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEE
Confidence            4789999999999999853      369999998765 112223589999999999998 799998432    22   78


Q ss_pred             EEeecCCCCCc--ccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHH-HHHHHHHHhhccCccccccc-chhhHHH-HH
Q 024452          111 EEFIHARTLSA--ADIRDPKISELVAAKMREFHDLKMPGPRKALLWDR-LRKWVSVAKSFCSAKDAKEF-CLYTLKD-EI  185 (267)
Q Consensus       111 ~e~i~G~~l~~--~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~  185 (267)
                      ++|++|.++..  ..-..+.++.++|+.|++||+...+.......... ...+................ ....+.. .+
T Consensus        74 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (239)
T PF01636_consen   74 MEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLL  153 (239)
T ss_dssp             EEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             EEEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHH
Confidence            99999988766  11112467899999999999996432221111110 11111110000000000000 1223333 34


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhh
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTK  241 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~  241 (267)
                      +.+.+.... ..+.++||||++++|||++++++.++|||||+++++++.||.|.+-
T Consensus       154 ~~~~~~~~~-~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~~~~~Dla~~~  208 (239)
T PF01636_consen  154 QELEALLPK-PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWGDPAYDLARLL  208 (239)
T ss_dssp             HHHHHHHHC-CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEEETHHHHHHHH
T ss_pred             HHHHhhhcc-CCCcEEEEeccccccceeeeccceeEEEecccceECCHHHHHHHHH
Confidence            455444322 5889999999999999999434556899999999999999977643

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=99.88  E-value=1.6e-21  Score=165.40  Aligned_cols=186  Identities=15%  Similarity=0.122  Sum_probs=121.3

Q ss_pred             EEEe-cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC-CC-CceEEEEECC-------ee
Q 024452           40 VIPL-KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ-GQ-GPRLLGRFGD-------GR  109 (267)
Q Consensus        40 i~~l-~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~-gl-~P~v~~~~~~-------~~  109 (267)
                      +.++ .||.+|.+|++.         ..+|+|++..... ..+..+|.+++++|++. ++ .|+++...+.       +.
T Consensus         2 ~~~~~~gG~~n~vy~~~---------~~~VlR~~~~~~~-~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~   71 (235)
T cd05155           2 IEPVDSGGTDNATFRLG---------DDMSVRLPSAAGY-AGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWS   71 (235)
T ss_pred             ceeccCCCcccceEEcC---------CceEEEcCCccch-HHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceE
Confidence            4566 489999999992         5799999765322 22446899999999975 55 6998886542       37


Q ss_pred             EEEeecCCCCCcccCCCh-HHHHHHHHHHHhhccCCCCCCCC---chhHH--HHHHHHHHHhhccCcccccccchhhHHH
Q 024452          110 VEEFIHARTLSAADIRDP-KISELVAAKMREFHDLKMPGPRK---ALLWD--RLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~-~i~~~la~~La~lH~~~~~~~~~---~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      +++|++|+++....+.++ .+..++|+.|++||+.+.+....   ...+.  .+..|.....+..... ...++...+..
T Consensus        72 l~~~i~G~~l~~~~~~~~~~l~~~la~~l~~LH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~  150 (235)
T cd05155          72 VYRWLEGETATAAALSDPSEFAEDLADFLAALRQIDPSGGPPAGRHNFLRGGDLAVRDAETREAIEAL-EGVIDVDAARA  150 (235)
T ss_pred             EEEeecCCCCCccccCCHHHHHHHHHHHHHHHhCCCcccCCccCCccccCCCChhHhhHHHHHHHHHc-ccccChHHHHH
Confidence            899999999976655543 57899999999999987643211   11110  1222222110000000 00011122333


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      .++.+.+.  ....+.+|||||++++|||+++ ++..+||||++|++|++++|+|.
T Consensus       151 ~~~~~~~~--~~~~~~~l~HGD~~~~Nvlv~~-~~i~giIDw~~a~~gDp~~Dla~  203 (235)
T cd05155         151 LWEAALRA--PWWGPPVWFHGDLAPGNLLVQD-GRLSAVIDFGCLGVGDPACDLAI  203 (235)
T ss_pred             HHHHHhcc--cccCCceEEeCCCCCCcEEEEC-CCEEEEEeCcccCcCChHHHHHH
Confidence            33333222  1236789999999999999985 34457999999999999999886

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=99.86  E-value=2.7e-20  Score=162.62  Aligned_cols=223  Identities=17%  Similarity=0.136  Sum_probs=154.0

Q ss_pred             CCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcC--CCcccccChHHHHH
Q 024452           10 PSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYG--EGVEVFFNRDDEIR   87 (267)
Q Consensus        10 ~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~--~~~~~~~dr~~E~~   87 (267)
                      ...+...+..+++..+|+|.+      ...+..+++|++|.+|.+..+      +++|+||.+.  ...+...+..+|++
T Consensus         6 ~~~~~~~l~~~l~~~ip~~~~------~~~v~~~~~G~sn~t~~~~~~------~~~~vlR~P~~~~~~~~~~~~~re~~   73 (321)
T COG3173           6 VALDIAALAAYLRSQIPGYAG------LLIVEEISGGWSNDTFRLGDT------GQKYVLRKPPRGDPVESAHDEKREYR   73 (321)
T ss_pred             ccCCHHHHHHHHHhhCcCcCC------CceeeeccCCcccceEEEecC------CceEEEecCCccccchhhhHHHhHHH
Confidence            345678899999999999985      457777899999999999632      5899999553  22334455678999


Q ss_pred             HHHHHHhCCC-CceEEEEEC--C----eeEEEeecCCCCCcccCC---ChHHHH-HHHHHHHhhccCCCCC---CCCch-
Q 024452           88 TFECMSSQGQ-GPRLLGRFG--D----GRVEEFIHARTLSAADIR---DPKISE-LVAAKMREFHDLKMPG---PRKAL-  152 (267)
Q Consensus        88 ~~~~l~~~gl-~P~v~~~~~--~----~~v~e~i~G~~l~~~~l~---~~~i~~-~la~~La~lH~~~~~~---~~~~~-  152 (267)
                      +++.+....+ +|+.++...  .    ..|++|++|+.+......   ...... .+++.|+.||+++.-+   ...++ 
T Consensus        74 ~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~  153 (321)
T COG3173          74 VIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNA  153 (321)
T ss_pred             HHHHhcCCCCCCcccccccccCCCCCceEEEEEecceeccCcCCcccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCc
Confidence            9998888754 477877754  3    279999999755442211   124555 9999999999997421   11222 


Q ss_pred             -hHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          153 -LWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       153 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                       ...++..|...........   ....+.+.....+++........+.+++|||++++|+|++++ +.+.|||||.+++|
T Consensus       154 ~~~rql~~~~~~~~~~~~~~---~~~~p~~~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~-~~~gVlDwe~~~lG  229 (321)
T COG3173         154 YRGRQLARWDDEYRRAKKEL---GGRIPLADRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPG-RPTGVLDWELATLG  229 (321)
T ss_pred             cccchhhHHHHHHHHHHHhc---cCCCchHHHHHHHHHhcCCCcCCCceeeeCCcccCCEEEeCC-CeeEEEeccccccC
Confidence             3345555655442111000   012345555667777765546788999999999999999984 56999999999999


Q ss_pred             hHhHHHHhhhhhheeee
Q 024452          232 MLNFKRACTKILLILTF  248 (267)
Q Consensus       232 ~~~fD~A~~~~~~~~~~  248 (267)
                      ++..|++-.-+.++...
T Consensus       230 DP~~Dl~~~~W~~~~~~  246 (321)
T COG3173         230 DPLEDLAIICWTIFDEP  246 (321)
T ss_pred             CcHHHHHHHHhccccch
Confidence            99999443215555433

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=99.85  E-value=2.7e-20  Score=167.82  Aligned_cols=237  Identities=16%  Similarity=0.135  Sum_probs=150.3

Q ss_pred             ChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-------ccccCh-HH
Q 024452           13 SPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-------EVFFNR-DD   84 (267)
Q Consensus        13 ~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-------~~~~dr-~~   84 (267)
                      +.+++.+++....+.+..    .+..+++++++|..|.+|+|+..+    .++++|||...+..       ....+| ..
T Consensus         8 ~~~~v~~yl~~~~~~~~~----~~~~~~~elggGn~N~VyrV~~~~----g~~svIVKqa~p~~r~~g~~wpl~~eR~~~   79 (401)
T PRK09550          8 TEEDAVEYAALKLGLFDP----KALLTAREIGDGNLNLVFRVSDTE----GGKSVIVKQALPYVRVVGESWPLTLDRARI   79 (401)
T ss_pred             CHhHHHHHHHHhcCCCCC----cccceeeEcCCCceEEEEEEEeCC----CCeEEEEEecCcccccccccccccHHHHHH
Confidence            567899999666565543    366889999999999999998542    12489999854321       122344 57


Q ss_pred             HHHHHHHHHhC--CCCceEEEEECCe--eEEEeecCCCCCcc----cCCChHHHHHHHHHHHhhccCCCCCC--C--Cch
Q 024452           85 EIRTFECMSSQ--GQGPRLLGRFGDG--RVEEFIHARTLSAA----DIRDPKISELVAAKMREFHDLKMPGP--R--KAL  152 (267)
Q Consensus        85 E~~~~~~l~~~--gl~P~v~~~~~~~--~v~e~i~G~~l~~~----~l~~~~i~~~la~~La~lH~~~~~~~--~--~~~  152 (267)
                      |.++++.+++.  +.+|+||+++++.  +||||+++.+.-..    .-..|.+.+++|+.|+++|-......  .  ...
T Consensus        80 Eae~L~~l~~~~p~~VPkV~~~D~~~~~lVME~L~~~~~lr~~Ll~g~~~p~~a~~iG~~LA~~~f~tsd~~~~~~~~~~  159 (401)
T PRK09550         80 EAEALKIQAKYVPDLVPKVYHYDEELAVTVMEDLSDHKILRKGLIDGKKYPKLAEHIGEFLARTLFYTSDFGLSSEEKKA  159 (401)
T ss_pred             HHHHHHHHHhhCCCCCCeEEEECCCCCEEEEecCCCccHHHHHHhcCCccHHHHHHHHHHHHHHHhccchhhcChhhhhh
Confidence            88999888775  4689999998753  99999998543211    12236789999999999885432210  0  000


Q ss_pred             hHH-----HHHH----------HHHHHhhccCcc-c--ccc-cchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeee
Q 024452          153 LWD-----RLRK----------WVSVAKSFCSAK-D--AKE-FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMI  213 (267)
Q Consensus       153 ~~~-----~l~~----------~~~~~~~~~~~~-~--~~~-~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv  213 (267)
                      ..+     .+.+          |++.......+. +  .+. +.-..|..++..|+..+.  ..+.+++|||+|+||||+
T Consensus       160 ~~~~f~N~~l~~ite~lvft~P~~~~~~n~~~p~l~~~~~~l~~d~~L~~~~~~L~~~~~--~~~~~l~HgDl~~gni~~  237 (401)
T PRK09550        160 LVAKFTNPELCKITEDLVFTDPYFDHETNNFEPELEPEVEELRADKELKLEVAKLKHKFL--TKAEALLHGDLHTGSIFV  237 (401)
T ss_pred             HHhhcCCHHHhhhhHhhccccchhhhhhccCChhhHHHHHHHHhCHHHHHHHHHHHHHHh--cCCCceeeccCCcccEEe
Confidence            000     0000          111110000000 0  000 011344555666665543  457789999999999999


Q ss_pred             eCCCCCEEEEeecccCcchHhHHHH-hhhhhheeeeccC-----CchhHhHHHH
Q 024452          214 DEETSSITIIVSFTFLQNMLNFKRA-CTKILLILTFSVN-----SPMVCMRWLR  261 (267)
Q Consensus       214 ~~~~~~v~lIDwE~a~~~~~~fD~A-~~~~~~~~~~~~~-----~~~~~~~~~~  261 (267)
                      .++  .+.+||||+|.+|+++||++ ++..+++.++++.     ....+..|+.
T Consensus       238 ~~~--~~~viD~E~a~~G~~~~Dlg~~lanl~~~~~~~~~~~~~~~~~~~~~~~  289 (401)
T PRK09550        238 TEE--ETKVIDPEFAFYGPIGFDIGTFIANLLLNYCSQPGLLGPREAAFREWLL  289 (401)
T ss_pred             eCC--CcEEEeccccccCChHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHH
Confidence            863  68999999999999999944 4555566776642     3334666764

>PRK12396 5-methylribose kinase; Reviewed

Probab=99.85  E-value=1.5e-20  Score=168.05  Aligned_cols=237  Identities=14%  Similarity=0.152  Sum_probs=157.4

Q ss_pred             ChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCC------CcccccCh-HHH
Q 024452           13 SPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGE------GVEVFFNR-DDE   85 (267)
Q Consensus        13 ~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~------~~~~~~dr-~~E   85 (267)
                      +.+++.+++.+..+.+..    .+.+++.+|++|..|.||+|..+.    .+++++||...+      ++..-.+| ..|
T Consensus        11 ~~~~v~~yl~~~l~~~~~----~~~~~~~eigdGnlN~VfrV~~~~----~~~svIVKQAlp~vRv~~swpL~~~R~~~E   82 (409)
T PRK12396         11 EANDVIVYVKEKLSKFEH----AKGLQCKEIGDGNLNYVFRVWDEQ----KNISVIVKQAGDTARISDEFKLSTNRIRIE   82 (409)
T ss_pred             CHhHHHHHHHHhcCCCCC----cccceeeEcCCCceEEEEEEeeCC----CCceEEEEeccHhhccCCCCCCChHHHHHH
Confidence            567888998887664443    467889999999999999997531    136888876532      23334556 579


Q ss_pred             HHHHHHHHhC--CCCceEEEEECCe--eEEEeecCCCCCccc----CCChHHHHHHHHHHHhhccCCCCCCC--------
Q 024452           86 IRTFECMSSQ--GQGPRLLGRFGDG--RVEEFIHARTLSAAD----IRDPKISELVAAKMREFHDLKMPGPR--------  149 (267)
Q Consensus        86 ~~~~~~l~~~--gl~P~v~~~~~~~--~v~e~i~G~~l~~~~----l~~~~i~~~la~~La~lH~~~~~~~~--------  149 (267)
                      .++++.+++.  +.+|++|+++++.  .|||+++...+-+..    ...|.++.++|+.|++.|-......-        
T Consensus        83 ~~aL~~~~~~~P~~VP~vy~~D~e~~~~vMEdL~~~~ilR~~Li~G~~~p~~A~~ig~fla~tlf~tSd~~l~~~~kk~~  162 (409)
T PRK12396         83 SDVLQLEEELAPGLVPKVYLFDSVMNCCVMEDLSDHTILRTALINHEIFPRLADDLTTFLVNTLLLTSDVVMNHKEKKEL  162 (409)
T ss_pred             HHHHHHHHhhCCCcCCeEEEECcHHhhHHHHhCcccHHHHHHHHcCCcChhHHHHHHHHHHHHHhhcchhccChHHHHHh
Confidence            9999998886  5689999999754  889999764432222    23478899999999998875432110        


Q ss_pred             -----CchhHHHHH------HHHHHHhh--ccCcc-c--cccc-chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCee
Q 024452          150 -----KALLWDRLR------KWVSVAKS--FCSAK-D--AKEF-CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIM  212 (267)
Q Consensus       150 -----~~~~~~~l~------~~~~~~~~--~~~~~-~--~~~~-~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nil  212 (267)
                           .+.+.+-.+      -|.+....  ...+. +  .+.+ .=..|..++..|+..+.  ....+|+|||+|+||||
T Consensus       163 v~~f~N~eLc~itedlvft~Py~~~~~~n~~~~~~~~~~~~~l~~D~~Lk~ev~~Lk~~F~--~~~~aLlHGDlHtGSI~  240 (409)
T PRK12396        163 VKNYINPELCEITEDLVYAEPFTNHNKRNELFPLNEGWIREHIYSDKELRLEVAKLKFSFM--TNAQALIHGDLHTGSVF  240 (409)
T ss_pred             hHhcCCHHHHHHhcccccccCcccchhccCCCChhhHHHHHHHhcCHHHHHHHHHHHHHHH--hcchhhccCcCCCCCEE
Confidence                 011111000      01111000  00000 0  0000 11345556666666543  56789999999999999


Q ss_pred             eeCCCCCEEEEeecccCcchHhHH-HHhhhhhheeeeccCCch-------hHhHHHH
Q 024452          213 IDEETSSITIIVSFTFLQNMLNFK-RACTKILLILTFSVNSPM-------VCMRWLR  261 (267)
Q Consensus       213 v~~~~~~v~lIDwE~a~~~~~~fD-~A~~~~~~~~~~~~~~~~-------~~~~~~~  261 (267)
                      ++++  .+.+||.|||-|||++|| .+++..+++.|+++.-.+       .+..|+-
T Consensus       241 v~~~--~~kvIDpEFAfyGP~gFDiG~~lanll~ay~~~~~~~~~~~~~~~~~~wll  295 (409)
T PRK12396        241 VKND--STKVIDPEFAFYGPMGYDIGNVMANLMFAWVNADATMSAGAEKDTYMDWLQ  295 (409)
T ss_pred             ecCC--ceEEEcccccccCCcHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHH
Confidence            9963  699999999999999999 778888899999865544       5566664

>PRK11768 serine/threonine protein kinase; Provisional

Probab=99.84  E-value=1.6e-19  Score=160.23  Aligned_cols=211  Identities=15%  Similarity=0.047  Sum_probs=131.6

Q ss_pred             cccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHH
Q 024452            7 ELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEI   86 (267)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~   86 (267)
                      ...++-+|+.+.+.|...  ++.      ..-++.++ +|..|.||+|+..     ++..||+|+++++.........|.
T Consensus         6 ~~~~~l~p~~~~~a~~~~--g~~------~~~~~~~l-~s~eN~vy~v~~~-----~~~~~vlKv~r~~~~~~~~i~~E~   71 (325)
T PRK11768          6 FPFQTLTPDLILDALESL--GLR------VDGRLLAL-NSYENRVYQFGDE-----DGRRVVAKFYRPERWSDAQILEEH   71 (325)
T ss_pred             CCCCCCChHHHHHHHHHc--CCC------CccceEee-ccccceEEEEecC-----CCCEEEEEEcCcccCCHHHHHHHH
Confidence            456778899999999887  332      11245555 4568999999853     256899999975431111124799


Q ss_pred             HHHHHHHhCCCC-ceEEEEEC------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCC--CCCCc--h
Q 024452           87 RTFECMSSQGQG-PRLLGRFG------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP--GPRKA--L  152 (267)
Q Consensus        87 ~~~~~l~~~gl~-P~v~~~~~------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~--~~~~~--~  152 (267)
                      +++.+|++.|++ |.++....      +|   .+++|++|+.....   +++..+++|+.|++||.....  ....+  +
T Consensus        72 ~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~~~G~~~~~~---~~~~~~~lG~~LarlH~~~~~~~~~~r~~~~  148 (325)
T PRK11768         72 AFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPRRGGRAPELD---NLDQLEWVGRFLGRIHQVGAKRPFEHRPTLD  148 (325)
T ss_pred             HHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEeeeCCCCCCCC---CHHHHHHHHHHHHHHHhhccCCCCCCCCcCC
Confidence            999999999974 44332111      22   67999999887542   567789999999999997653  22212  1


Q ss_pred             hH---HHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          153 LW---DRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       153 ~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..   .....++..  +-..+.+....-...+.+....+++.+.....+.++||||+|++|||++  + .++|||||+|+
T Consensus       149 ~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~liHgD~h~~NvL~~--d-~~~iIDFDd~~  223 (325)
T PRK11768        149 LQEYGIEPRDWLLA--SDLIPSDLRPAYLAAADQLLAAVEACWARGDVRLLRLHGDCHPGNILWR--D-GPHFVDLDDAR  223 (325)
T ss_pred             HHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceecCCCchhcccc--C-CcEEEeCCCCC
Confidence            11   111111110  0000000000001122222233334333234678999999999999995  2 57999999999


Q ss_pred             cchHhHHHHh
Q 024452          230 QNMLNFKRAC  239 (267)
Q Consensus       230 ~~~~~fD~A~  239 (267)
                      +|++.||+|.
T Consensus       224 ~g~~i~DLa~  233 (325)
T PRK11768        224 MGPAVQDLWM  233 (325)
T ss_pred             CCCHHHHHHH
Confidence            9999999876

>PLN02876 acyl-CoA dehydrogenase

Probab=99.84  E-value=5.1e-19  Score=174.45  Aligned_cols=221  Identities=12%  Similarity=0.163  Sum_probs=149.8

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHH
Q 024452           12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTF   89 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~   89 (267)
                      -+.+.+.+++...+|.+...   .+.+.++++++|.+|.+|+++....  +...++|+|...++...  ..+..+|++++
T Consensus        18 ~d~~~l~~~l~~~~~~~~~~---~~~~~v~~l~gG~sn~ty~l~~~~~--~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l   92 (822)
T PLN02876         18 FDEDALLRYAAANVAGFPVP---PSTFKVSQFGHGQSNPTFLLEVGNG--GSVKRYVLRKKPPGKLLQSAHAVEREYQVL   92 (822)
T ss_pred             CCHHHHHHHHHHhCCCcCCC---ccceeEEEeCCCCcCceEEEEECCC--CcceeEEEEeCCCCccCccHHHHHHHHHHH
Confidence            45688999999888887641   2457899999999999999986421  11258999997554311  11236899999


Q ss_pred             HHHHh-CCC-CceEEEEECC----e---eEEEeecCCCCCcccCC--C----hHHHHHHHHHHHhhccCCCCCC-----C
Q 024452           90 ECMSS-QGQ-GPRLLGRFGD----G---RVEEFIHARTLSAADIR--D----PKISELVAAKMREFHDLKMPGP-----R  149 (267)
Q Consensus        90 ~~l~~-~gl-~P~v~~~~~~----~---~v~e~i~G~~l~~~~l~--~----~~i~~~la~~La~lH~~~~~~~-----~  149 (267)
                      +.+.+ .++ +|++++.+.+    |   +||+|++|+.+....+.  +    ..++.++++.|++||+...+..     .
T Consensus        93 ~~L~~~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g  172 (822)
T PLN02876         93 RALGEHTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYG  172 (822)
T ss_pred             HHHhhcCCCCCCcEEEEecCCCcCCCceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcC
Confidence            99985 455 6999987542    2   89999999876543221  1    2367889999999999875421     0


Q ss_pred             Cc-h-hHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC---CcEEEEccCCCCCCeeeeCCCCC-EEEE
Q 024452          150 KA-L-LWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH---QEIGFCHNDLQYGNIMIDEETSS-ITII  223 (267)
Q Consensus       150 ~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~---~~~~l~H~Dl~~~Nilv~~~~~~-v~lI  223 (267)
                      .+ . ...++..|..+........  .....+.+.+.+++|+..++...   .+.++||||++++|||++++++. +.||
T Consensus       173 ~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVL  250 (822)
T PLN02876        173 RRDNYCKRQVERWAKQYLASTGEG--KPPRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGIL  250 (822)
T ss_pred             CCCchHHHHHHHHHHHHHHhhccc--CCCCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEE
Confidence            11 1 2235666665543221100  00112455666678876654322   25799999999999999864334 5899


Q ss_pred             eecccCcchHhHHHHh
Q 024452          224 VSFTFLQNMLNFKRAC  239 (267)
Q Consensus       224 DwE~a~~~~~~fD~A~  239 (267)
                      |||+|+.|++.+|+|-
T Consensus       251 DWE~a~~GdPl~DLa~  266 (822)
T PLN02876        251 DWELSTLGNQMCDVAY  266 (822)
T ss_pred             eeeccccCChHHHHHH
Confidence            9999999999999654

>PLN02756 S-methyl-5-thioribose kinase

Probab=99.82  E-value=1.3e-18  Score=156.42  Aligned_cols=238  Identities=14%  Similarity=0.123  Sum_probs=152.0

Q ss_pred             CChHHHHHHHHHhCCCCCCCCC-CCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-------ccccCh-
Q 024452           12 SSPEELKKVLQSVASDWGDVID-DSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-------EVFFNR-   82 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~-~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-------~~~~dr-   82 (267)
                      -+.+.+.+++.+. +.|..... ..+..+++++++|.+|.+|+|+.+      ++++|||...+..       ..-.+| 
T Consensus         9 l~~~~l~~yl~~~-~~~~~~l~g~~~~l~~~eiggGn~N~VyrV~~~------~~svVVKqa~p~~r~vga~wpl~~~R~   81 (418)
T PLN02756          9 LDEKSLVEYIKAT-PALSSKIGNDLDDLKIKEVGDGNLNFVYIVVSS------SGSFVIKQALPYIRCIGESWPMTKERA   81 (418)
T ss_pred             CCHHHHHHHHHHc-cchhhhcCCCCCCceEEEcCCCceeeEEEEEcC------CccEEEEeCCccccCCCccccCCccHH
Confidence            3568888888887 43332211 125678999999999999999742      3689999876332       123455 


Q ss_pred             HHHHHHHHHHHhC--CCCceEEEEECCe--eEEEeecC-C-CCCcc---cCCChHHHHHHHHHHHhh--ccCCCCCCCCc
Q 024452           83 DDEIRTFECMSSQ--GQGPRLLGRFGDG--RVEEFIHA-R-TLSAA---DIRDPKISELVAAKMREF--HDLKMPGPRKA  151 (267)
Q Consensus        83 ~~E~~~~~~l~~~--gl~P~v~~~~~~~--~v~e~i~G-~-~l~~~---~l~~~~i~~~la~~La~l--H~~~~~~~~~~  151 (267)
                      ..|.++++.+++.  +.+|++|+++++.  ++|||++| . .+...   ....|...+++|..|++.  |....--.. .
T Consensus        82 ~~Ea~aL~~~~~~~p~~VPkVy~~ded~~vlvME~L~~~~~ilr~~Ll~G~~~p~~a~~ig~~la~tLf~tSd~~~~~-~  160 (418)
T PLN02756         82 YFEATALREHGRLCPDHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSDYMAKTLFFTSLLYHDT-T  160 (418)
T ss_pred             HHHHHHHHHhhhcCCCCCCeEEEECCCCCEEEEeecCCcceehhhhhccCCCCHHHHHHHHHHHHHHHhhcchhccCh-h
Confidence            4677777777665  4689999999754  88999988 3 34332   223478899999999986  322210000 0


Q ss_pred             hhHHHHHHHH-------------------HHHhhccCcccc----cc-cchhhHHHHHHHHHHhCCCCCCcEEEEccCCC
Q 024452          152 LLWDRLRKWV-------------------SVAKSFCSAKDA----KE-FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQ  207 (267)
Q Consensus       152 ~~~~~l~~~~-------------------~~~~~~~~~~~~----~~-~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~  207 (267)
                      .-......|.                   +.-.....+...    +. ..=..+..++..|+..+.  ....+|+|||+|
T Consensus       161 ~kk~~~~~f~~N~elc~itEdlvFt~Py~~~~~n~~~~p~l~~~~~~l~~d~~L~~~v~~Lk~~f~--~~~~~L~HGDl~  238 (418)
T PLN02756        161 EHKRAVAEFCGNVELCRLTEQVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNILKLEIAELKSMFC--ERAQALVHGDLH  238 (418)
T ss_pred             hhhHHHHHhcCCHHHHHHHHhheeccccccchhcCCCCcchHHHHHHHhcCHHHHHHHHHHHHHHH--hcccceeecCCC
Confidence            0001111111                   000000000000    00 011456666777776653  567899999999


Q ss_pred             CCCeeeeCCCCCEEEEeecccCcchHhHH-HHhhhhhheeeeccCCch-------hHhHHHH
Q 024452          208 YGNIMIDEETSSITIIVSFTFLQNMLNFK-RACTKILLILTFSVNSPM-------VCMRWLR  261 (267)
Q Consensus       208 ~~Nilv~~~~~~v~lIDwE~a~~~~~~fD-~A~~~~~~~~~~~~~~~~-------~~~~~~~  261 (267)
                      +||||++++  .+.+||.|||-+|+++|| ..++..+++.|+++.-.+       .+..|+-
T Consensus       239 ~g~i~~~~~--~~~~id~ef~~~g~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  298 (418)
T PLN02756        239 TGSVMVTPD--STQVIDPEFAFYGPMGFDIGAFLGNLILAYFAQDGHADQANDRKTYKEWIL  298 (418)
T ss_pred             CCcEEEcCC--CceEecchhhccCchHHhHHHHHhhhHHHHhhCcccccccchhHHHHHHHH
Confidence            999999963  589999999999999999 556777788998865444       4566664

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=153.68  Aligned_cols=213  Identities=14%  Similarity=0.078  Sum_probs=134.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCC-ceEE-EEE-------CC-
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQG-PRLL-GRF-------GD-  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~-P~v~-~~~-------~~-  107 (267)
                      -++..+.+ ..|.||+|++.      .+++|+|++.++ ....+...|.+++.+|++.|++ |.++ ..+       .+ 
T Consensus        29 ~~~~~l~s-~eN~~f~~~~~------~g~~iLki~~~~-~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~  100 (331)
T COG2334          29 GSLRGLNS-EENSNFRVQTE------DGRYILKIYRPG-WTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGG  100 (331)
T ss_pred             cccccccc-ccCceEEEEec------CCCeEEEEecCC-CCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCC
Confidence            35666655 79999999863      367799999887 2222335899999999999974 4432 211       12 


Q ss_pred             -e--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC-CchhHHHHHHHH----HHHhhccCcccccccchh
Q 024452          108 -G--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-KALLWDRLRKWV----SVAKSFCSAKDAKEFCLY  179 (267)
Q Consensus       108 -~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~-~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~  179 (267)
                       .  .+++|++|+.+..  -.+.+.++.+|+.|++||........ .|+... ...|.    ..........  ..-...
T Consensus       101 ~r~a~lf~~l~G~~~~~--~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~-~~~w~~~~~~~~~~~~~~~--~~~l~a  175 (331)
T COG2334         101 PRPAALFEYLPGRPLER--DDNAEQLEELGRMLGRLHLALRGFPFERPNALR-RLEWDILEPRALLRLDLVE--PEDLRA  175 (331)
T ss_pred             ceeEEEEEecCCcCcCC--CCcHHHHHHHHHHHHHHHHHhCcCCccCCCccc-ccchhhhcchhhhhhcccC--chhhHH
Confidence             1  7899999999885  23457899999999999998765431 122111 11121    1000000000  000123


Q ss_pred             hHHHHHHHHHHhCCCC--CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhheeeeccCCchhHh
Q 024452          180 TLKDEISMLEKELPND--HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCM  257 (267)
Q Consensus       180 ~l~~~~~~l~~~l~~~--~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~~~~~~~~  257 (267)
                      .+...++.+.+.+...  .....+||||++++||++++++..+++|||++|++|+..||+|.+=... ..-.....+...
T Consensus       176 ~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~~~i~DlAi~l~~~-~~d~~~~~~~~~  254 (331)
T COG2334         176 ALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGYGWFIYDLAIALNAW-NGDEADPRAAIA  254 (331)
T ss_pred             HHHHHHHHHHhhchhhCCcccceeeecCCCccceeEcCCCCeeeEEEccccccchHHHHHHHHHHHh-hcCCCCcHHHHH
Confidence            4445555565555331  2223499999999999999742248999999999999999976533221 222344455566


Q ss_pred             HHHHHHh
Q 024452          258 RWLRILC  264 (267)
Q Consensus       258 ~~~~~~~  264 (267)
                      .|+.+|+
T Consensus       255 a~l~GY~  261 (331)
T COG2334         255 AFLEGYE  261 (331)
T ss_pred             HHHHHHH
Confidence            7788876

>PRK10593 hypothetical protein; Provisional

Probab=99.81  E-value=2.3e-18  Score=150.94  Aligned_cols=207  Identities=8%  Similarity=0.091  Sum_probs=129.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC-cccccChHHHHHHHHHHHh
Q 024452           16 ELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG-VEVFFNRDDEIRTFECMSS   94 (267)
Q Consensus        16 ~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~-~~~~~dr~~E~~~~~~l~~   94 (267)
                      .|.+-+.+.++.        ...++++|.+|.++.+|+++..      ++++|+|++... ...++  ..|++.++.|++
T Consensus         3 ~~~~~~~~~~~~--------~~~~~~~i~~G~~~~vy~~~~~------~~~~~~k~~~~~~~~~~~--~~Ea~~L~~L~~   66 (297)
T PRK10593          3 QLRAELSHLLGE--------KLSRVECISEQPYAALWALYDS------QGNPMPLMARSFSTPGVA--QQEAWKLSMLAR   66 (297)
T ss_pred             HHHHHHHHHhch--------hhheeeecCCccceeEEEEEcC------CCCEEEEEecccccchHH--HHHHHHHHHHcc
Confidence            344555555443        2358899999999999999742      357888986543 22233  489999999999


Q ss_pred             CC-C-CceEEEEEC-------CeeEEEeecCCCCCcccCCC---hHHHHHHHHHHHhhccCCCCC---CCCchhHHHHHH
Q 024452           95 QG-Q-GPRLLGRFG-------DGRVEEFIHARTLSAADIRD---PKISELVAAKMREFHDLKMPG---PRKALLWDRLRK  159 (267)
Q Consensus        95 ~g-l-~P~v~~~~~-------~~~v~e~i~G~~l~~~~l~~---~~i~~~la~~La~lH~~~~~~---~~~~~~~~~l~~  159 (267)
                      .+ + +|+|++...       ..+|+|||+|.++.......   .....++++.|++||+.+..+   .........+..
T Consensus        67 ~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~~~~~~~~~~~~~l~~~l~~~La~LH~~~~~g~~g~~~~~~~~~w~~  146 (297)
T PRK10593         67 SGTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSVEAPARTPERWEQLKDQIVEGLLAWHRIDSRGCVGAVDSTQENLWPS  146 (297)
T ss_pred             CCCCCcCcEEEEeccCCcCCCeEEEEeccCCEecCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcccCCCCcccccHHH
Confidence            75 4 799998642       23999999998876421111   234567789999999975321   111011123444


Q ss_pred             HHHHHhh-----ccCcccccccchhhHHHHHHHHH----HhCCCCCCcEEEEccCCCCCCeeeeCCCCC-EEEEeecccC
Q 024452          160 WVSVAKS-----FCSAKDAKEFCLYTLKDEISMLE----KELPNDHQEIGFCHNDLQYGNIMIDEETSS-ITIIVSFTFL  229 (267)
Q Consensus       160 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~----~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~-v~lIDwE~a~  229 (267)
                      |+.+-..     +.... ..... ......+.++.    +.+.....++++||||+|+||||++++++. +.+||+..|.
T Consensus       147 f~~~rl~~~~~~~~~~~-~~~l~-~~~~~~~~~l~~~l~~~L~~~~~~psLlHGDlw~gNvl~~~~~~~i~~liDPa~~~  224 (297)
T PRK10593        147 WYQQRVEVLWTTLNQFN-NTGLT-MQDRRILFRTRECLPALFEGFNDNCVLVHGNFTLRSMLKDPRSDQLLAMLNPGLML  224 (297)
T ss_pred             HHHHHHHHHHhhhhhcc-ccCCC-hhHHHHHHHHHHhchhhhccCCCCCeeEeCCCCcccEEECCCCCceEEEECchHhC
Confidence            4432110     00000 00010 11122233333    333333446899999999999999864233 7899999999


Q ss_pred             cchHhHHHHhh
Q 024452          230 QNMLNFKRACT  240 (267)
Q Consensus       230 ~~~~~fD~A~~  240 (267)
                      +|++++|+|.+
T Consensus       225 ~g~rE~DLa~~  235 (297)
T PRK10593        225 WAPREYELFRL  235 (297)
T ss_pred             CCCHHHhHHHh
Confidence            99999999764

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=99.79  E-value=5.3e-18  Score=147.14  Aligned_cols=193  Identities=11%  Similarity=-0.044  Sum_probs=120.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC-CC-CceEEEEECCeeEEEeec
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ-GQ-GPRLLGRFGDGRVEEFIH  115 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~-gl-~P~v~~~~~~~~v~e~i~  115 (267)
                      -++....+|++|.+|.+...     ++..+|+|+...... ....++|.++++.|+.+ .+ .|+++..+.+..++++++
T Consensus        14 ~~~~~~~~g~~~~v~~i~~~-----~g~~~VlR~p~~~~~-~~~l~rE~~vL~~L~~~l~vpvP~~~~~~~~~~~y~~i~   87 (276)
T cd05152          14 ETLSLNESGLDFQVVFAKDT-----DGVPWVLRIPRRPDV-SERAAAEKRVLALVRKHLPVQVPDWRVHTPELIAYPKLP   87 (276)
T ss_pred             CcceecCCcceeEEEEEEcC-----CCCeEEEEecCCHHH-HHHHHHHHHHHHHHHhcCCCCCCceeeecCceEEEeccC
Confidence            35666688899999998521     357999999854321 11236899999999885 33 477766666668899999


Q ss_pred             CCCCCccc-------------CCChHHHHHHHHHHHhhccCCCCCC-----CCchhHHHHHHHHHHHhhccCcccccccc
Q 024452          116 ARTLSAAD-------------IRDPKISELVAAKMREFHDLKMPGP-----RKALLWDRLRKWVSVAKSFCSAKDAKEFC  177 (267)
Q Consensus       116 G~~l~~~~-------------l~~~~i~~~la~~La~lH~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  177 (267)
                      |.++...+             -..+.++.++|+.|++||+++.+..     ...........|...+.+......   ..
T Consensus        88 G~p~~~~~~~~~~~~~~~~~~~~~~~la~~la~~La~LH~i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~  164 (276)
T cd05152          88 GVPAATIDPEIGEYVWNFDHKNPPEVFIESLAKALAELHSIPQDEAEAAGIPVETPEEVRQTMADRMDRVKEEFG---VS  164 (276)
T ss_pred             CCcccccCcccccceecccCCCcCHHHHHHHHHHHHHHhCCChhhccccCCCCCCHHHHHHHHHHHHHHHHHhcC---CC
Confidence            98763211             1124578899999999999875321     111111112223232222111000   00


Q ss_pred             hhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          178 LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       178 ~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      ...+....++|.+. .....+.++||||++++|||++++++..+||||++|++|++++|+|.+
T Consensus       165 ~~l~~~~~~~L~~~-~~~~~~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGDPa~Dla~~  226 (276)
T cd05152         165 EALWNRWQAWLDDD-SYWPRHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPARDFVLH  226 (276)
T ss_pred             HHHHHHHHHHHhhc-CCCCCCCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCCHHHHHHHH
Confidence            01222222333321 123556899999999999999863233579999999999999998863

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=99.77  E-value=6.5e-18  Score=149.51  Aligned_cols=212  Identities=13%  Similarity=0.065  Sum_probs=131.3

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCC-------CcccccCh-HHHHHHHHHHHhC--CCCceEEEEECCe--e
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGE-------GVEVFFNR-DDEIRTFECMSSQ--GQGPRLLGRFGDG--R  109 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~-------~~~~~~dr-~~E~~~~~~l~~~--gl~P~v~~~~~~~--~  109 (267)
                      .+++|..|.||+|..+.    .+++++||...+       ++..-.+| ..|..+++.+++.  +.+|++|+++++.  .
T Consensus         2 EigdGnlN~VfrV~~~~----g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D~e~~~~   77 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQE----GDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFDTEMAVT   77 (370)
T ss_pred             cCCCCceEEEEEEEcCC----CCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEcccccee
Confidence            46899999999998531    125899886532       23444566 5788999888776  3589999998754  8


Q ss_pred             EEEeecCCCCCcc----cCCChHHHHHHHHHHHhhccCCCCCCCC-------------chhHHHHH------HHHHHHhh
Q 024452          110 VEEFIHARTLSAA----DIRDPKISELVAAKMREFHDLKMPGPRK-------------ALLWDRLR------KWVSVAKS  166 (267)
Q Consensus       110 v~e~i~G~~l~~~----~l~~~~i~~~la~~La~lH~~~~~~~~~-------------~~~~~~l~------~~~~~~~~  166 (267)
                      +||+++....-+.    .-..|..+.++|+.|++.|-.+....-.             +.+.+-.+      -|.+....
T Consensus        78 vMEdL~~~~ilR~~Li~g~~~p~~A~~iG~~La~tlf~tsd~~~~~~~kk~l~~~f~N~eLc~itEdlvft~py~~~~~n  157 (370)
T TIGR01767        78 VMEDLSHHKIARKGLIEGENYPHLARHIGEFLAKTLFYSSDYALEPKVKKALVAQFTNPELCDITERLVFTDPYFDHDTN  157 (370)
T ss_pred             hHhhCccchHHHHHHHcCCCChHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhCCHHHHHHHHHhccccchhhhhhh
Confidence            8999976433221    1234778999999999987544211100             01000000      01110000


Q ss_pred             ccCcc-c--ccc-cchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHH-hhh
Q 024452          167 FCSAK-D--AKE-FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRA-CTK  241 (267)
Q Consensus       167 ~~~~~-~--~~~-~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A-~~~  241 (267)
                      ...+. +  .+. ..-..++.++..|+..+.  ....+++|||+|+||||++++  .+.+||||+|.+|+++||+| ++.
T Consensus       158 ~~~p~l~~~~~~l~~d~~l~~~v~~Lk~~f~--~~~~~llHGDl~~gNi~~~~~--~~~~iD~e~~~~G~~~~Dlg~~ia  233 (370)
T TIGR01767       158 DFEEELRPFVAKLRNDDSLKIEAAKLKHSFL--ASAETLLHGDLHSGSIFVSEH--ETKVIDPEFAFYGPIGFDIGQFIA  233 (370)
T ss_pred             cCChhHHHHHHHHhcCHHHHHHHHHHHHhhc--cCcceeeeccCCcccEEEcCC--CCEEEcCcccccCchHhhHHHHHH
Confidence            00000 0  000 011344555555655442  566799999999999999853  58899999999999999944 556


Q ss_pred             hhheeeeccCCc------hhHhHHHH
Q 024452          242 ILLILTFSVNSP------MVCMRWLR  261 (267)
Q Consensus       242 ~~~~~~~~~~~~------~~~~~~~~  261 (267)
                      .+++.++++.-.      -.+..|+-
T Consensus       234 nL~l~~~~~~~~~~~~~~~~~~~~ll  259 (370)
T TIGR01767       234 NLFLNALSRDGADQKGKRDAMREPLL  259 (370)
T ss_pred             HHHHHHhCccccCccchhHHHHHHHH
Confidence            667777765433      35667764

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=99.76  E-value=3.4e-17  Score=144.23  Aligned_cols=201  Identities=15%  Similarity=0.113  Sum_probs=117.3

Q ss_pred             eeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEEC--------C--eeEEEeecCC
Q 024452           49 NEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFG--------D--GRVEEFIHAR  117 (267)
Q Consensus        49 N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~--------~--~~v~e~i~G~  117 (267)
                      +.+|+|+++      ++.+++|.+......   ...|.+++.+|++.|+ +|+++....        +  ..+++|++|+
T Consensus        10 ~~v~~v~t~------~g~~~LK~~~~~~~~---~~~~~~~~~~L~~~g~~vp~~i~t~~g~~~~~~~~~~~~l~~~i~G~   80 (313)
T TIGR02906        10 RNVYKVETD------SGNKCLKKINYPPER---LLFILGAQEHLRKNGFNIPKILKTKDGELYVKYNGDLYVLTEWIEGR   80 (313)
T ss_pred             ccEEEEEeC------CCCeEEEEcCCCHHH---HHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEehhccCc
Confidence            459999853      357999987533221   2368899999999997 477765422        1  2789999998


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCC----c----h-hHHHHHHHHHHHhhc-------cCcccccccc---h
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRK----A----L-LWDRLRKWVSVAKSF-------CSAKDAKEFC---L  178 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~----~----~-~~~~l~~~~~~~~~~-------~~~~~~~~~~---~  178 (267)
                      ++..   .++..+.++|+.||+||.........    +    . ..+.+....+.+.+.       ....+.....   +
T Consensus        81 ~~~~---~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (313)
T TIGR02906        81 ECDF---NNPIDLKKAAKGLALFHHASKGYVPPDGSKIRSKLGKWPKQFEKRLKELERFKKIALEKKYKDEFDKLYLKEV  157 (313)
T ss_pred             CCCC---CCHHHHHHHHHHHHHHHHhCCCCCCCCcchhhccccchHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence            8763   34667899999999999987543210    0    0 111111111111110       0000000000   0


Q ss_pred             ----hhHHHHHHHHHH-----hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhhe-eee
Q 024452          179 ----YTLKDEISMLEK-----ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLI-LTF  248 (267)
Q Consensus       179 ----~~l~~~~~~l~~-----~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~-~~~  248 (267)
                          ......++.+..     .......+.++||||++++||++++  +.+.|||||+|+++++.+|+|.+-..++ ...
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~~~~~~~~Dla~~l~~~~~~~~  235 (313)
T TIGR02906       158 DYFLERGKKALELLNKSKYYDLCKEAKKIRGFCHQDYAYHNILLKD--NEVYVIDFDYCTIDLPVRDLRKLIIKLMKKNG  235 (313)
T ss_pred             HHHHHHHHHHHHHHhhCcHHHHHHhhcCcCceEcCCCCcccEEEeC--CcEEEEECcccccCCcHHHHHHHHHHHHHhcc
Confidence                111111122211     1112345789999999999999985  4689999999999999999885333333 111


Q ss_pred             ccCCchhHhHHHHHHh
Q 024452          249 SVNSPMVCMRWLRILC  264 (267)
Q Consensus       249 ~~~~~~~~~~~~~~~~  264 (267)
                      . .+......++.+|+
T Consensus       236 ~-~d~~~~~~~l~gY~  250 (313)
T TIGR02906       236 V-WDLEKAKEIIEAYS  250 (313)
T ss_pred             C-CCHHHHHHHHHHhh
Confidence            1 12223456666665

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=99.75  E-value=8e-18  Score=145.10  Aligned_cols=198  Identities=18%  Similarity=0.158  Sum_probs=118.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC----CeeEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG----DGRVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~~~v~e~i  114 (267)
                      .+.++. |.||.+|++...     ....++.|.+++....+..+.            +. |+++....    +.++.++.
T Consensus        10 ~~~~~~-g~t~~~~~~~~~-----g~~~~~~r~~~p~~~~~~~~~------------~~-~~l~~~~~~~~~~~~~~q~~   70 (269)
T COG0510          10 KITPLN-GLTGYAFRIEGE-----GTRVFLKRNFEPFLPALIFRL------------IV-PKLLWLKRIANGGVLVAQYW   70 (269)
T ss_pred             eeeecc-CCcceeEEeeCC-----CCeeeeecCCCcchHHHHHHh------------hh-hhhhhhcccccCCceEEeee
Confidence            566665 889999999522     124444556555443333221            22 33333322    22555555


Q ss_pred             -cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC---CCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          115 -HARTLSAADIRDPKISELVAAKMREFHDLKMPGP---RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       115 -~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                       .|++++...    .....++..|+++|.......   .....+..+..+.+.+......   .......+...+..++.
T Consensus        71 ~~~~~l~~~~----~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~  143 (269)
T COG0510          71 ENGRTLTPED----MNLKKIAHILKKLHNSVPLLHQLPRSGSSFIEPKDYLELLWQQNSR---AYRDNHLLRKKLKELRR  143 (269)
T ss_pred             ccccccCccc----cchHHHHHHHHHhcCccchHHHHHhhcchHhhHHHHHHHHHhhchH---HhhhhHHHHHHHHHHHH
Confidence             567777652    235678889999999543221   1112334455555544322210   01134667777888887


Q ss_pred             hCCCCCCc-EEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhh-hheeeeccCCchhHhHHHHHHhh
Q 024452          191 ELPNDHQE-IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKI-LLILTFSVNSPMVCMRWLRILCL  265 (267)
Q Consensus       191 ~l~~~~~~-~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~-~~~~~~~~~~~~~~~~~~~~~~~  265 (267)
                      .+.....+ .++||||++++|++.++ .+++.|||||||+.|+++||+|++=+ .+++..  +.-..+..|+..+-.
T Consensus       144 ~l~~~~~~~~v~cH~Dl~~~N~l~t~-~~~l~LIDWEyAg~~D~~~DLA~~~~e~~~~~~--~~~~~~~~~~~~~~~  217 (269)
T COG0510         144 ALEEVPKDDLVPCHNDLNPGNLLLTD-KGGLFLIDWEYAGLNDPAFDLAALLSEYIFNHN--ELEDLYSAYLEKYGF  217 (269)
T ss_pred             HhhhcCCCceeeecCCCCccceEEcC-CCcEEEEecccCCCccHHHHHHHHHHHhccchh--HHHHHHHHHHHhCCc
Confidence            77766666 99999999999999986 36899999999999999999887222 122221  011256667666543

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=99.73  E-value=2.3e-17  Score=143.40  Aligned_cols=203  Identities=16%  Similarity=0.203  Sum_probs=113.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC
Q 024452           16 ELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ   95 (267)
Q Consensus        16 ~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~   95 (267)
                      .|.+.|.+.++.=      ....++++++||..|..|+++.      ++++||+|+.......++  +.|++.++.|++.
T Consensus         4 ~i~~~~~~~~~~~------~~i~~~~~v~GG~i~~a~~~~~------~~~~~FvK~~~~~~~~~f--~~Ea~gL~~L~~~   69 (288)
T PF03881_consen    4 AIEQQISEQLGAD------FKITSIEPVSGGDINEAYRLDT------DGGSYFVKVNSESGRDMF--EGEAEGLKALAEA   69 (288)
T ss_dssp             HHHHHHHHHHTS-----------EEEEE--SSSSEEEEEET------TS-EEEEEEEEGGGCCHH--HHHHHHHHHHCHT
T ss_pred             HHHHHHHHHhCCC------CceeeeEecCCCChhheEEEEC------CCccEEEEecChhhHHHH--HHHHHHHHHHHhc
Confidence            4566666665431      1356899999999999999983      358999999764333344  4899999999764


Q ss_pred             C--CCceEEEEEC--C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhcc-CCCCC---C--------CCchhH-HH
Q 024452           96 G--QGPRLLGRFG--D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHD-LKMPG---P--------RKALLW-DR  156 (267)
Q Consensus        96 g--l~P~v~~~~~--~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~-~~~~~---~--------~~~~~~-~~  156 (267)
                      +  .+|+|+....  +  .+|+||++....+.      .-..++|+.||+||+ .+.+.   .        ++++-| +.
T Consensus        70 ~~~~vP~vi~~G~~~~~~fLlle~l~~~~~~~------~~~~~lg~~LA~LH~~~~~~~FGf~~~~~~G~~~q~N~w~~~  143 (288)
T PF03881_consen   70 NPIRVPKVIAWGEYDDDAFLLLEFLEMGSPSP------PDWEELGRQLAALHQWSPAGKFGFPVDTYIGSLPQPNTWTDS  143 (288)
T ss_dssp             TTSBS--EEEEEE-SSCCEEEEE--------C------CHHHHHHHHHHHHHH-T--SSBB-SS-EEETTEEE----BS-
T ss_pred             CCCCCCeEEEEEeecCCceEEEEeecCCCCCc------hhHHHHHHHHHHHhhhcCCCCcCCCcCCcccCcCCCCCCCCC
Confidence            3  4799999863  2  29999998763322      236899999999999 33221   0        111211 34


Q ss_pred             HHHHHHHHhhccCcc---cccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchH
Q 024452          157 LRKWVSVAKSFCSAK---DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNML  233 (267)
Q Consensus       157 l~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~  233 (267)
                      |..|+... ++....   ..+......+++.++.+.+.+.....+++++||||+.||++++.+ +...|||-- |.+|++
T Consensus       144 W~~Ff~~~-RL~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~PsLlHGDLW~GN~~~~~~-g~p~l~DPa-~yygh~  220 (288)
T PF03881_consen  144 WEEFFAEQ-RLRPQLELAREKGGLDAELERLVERLPSLLPGREPKPSLLHGDLWSGNVGFDAD-GEPVLFDPA-CYYGHR  220 (288)
T ss_dssp             HHHHHHHH-CCHHHHHHHHHCTSS-CHHHHHHHHHHHCCTTS----EEE-SS-SGGGEEEETT-E-EEE-S----EEE-C
T ss_pred             HHHHHHHH-HHHHHHHHHHhhCCchhHHHHHHHHHHHHhcCCCCCceeeEcCccccceeecCC-CCceeeccc-cccCch
Confidence            44444321 111000   001111345566667777777555667899999999999999975 679999998 889999


Q ss_pred             hHHHHhhh
Q 024452          234 NFKRACTK  241 (267)
Q Consensus       234 ~fD~A~~~  241 (267)
                      ++|+|++.
T Consensus       221 E~DLam~~  228 (288)
T PF03881_consen  221 EVDLAMTR  228 (288)
T ss_dssp             HHHHHHHC
T ss_pred             Hhhhhhhh
Confidence            99999865

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=99.72  E-value=1e-16  Score=141.47  Aligned_cols=205  Identities=11%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             CceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCC-ceEEEEECC--------e---eEEE
Q 024452           45 GAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQG-PRLLGRFGD--------G---RVEE  112 (267)
Q Consensus        45 ~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~-P~v~~~~~~--------~---~v~e  112 (267)
                      .|..|.||+|.++      ++.+++|........+   .....++++|.+.|+. |.++....+        +   .+++
T Consensus        16 ~~~~~~v~~v~T~------~G~~~Lk~~~~~~~~l---~~~~~~~~~L~~~G~~~~~~~~~t~~G~~~~~~~~~~~~L~~   86 (309)
T TIGR02904        16 EQVTGKLFKVYTD------QGVFALKKLYADRNTI---ESFVSQIQVLSEKGFSRIVPVYPTKDGSYYLFHGHFLYYLMP   86 (309)
T ss_pred             ecccCcEEEEEeC------CCCEEEEEeccchHhH---HHHHHHHHHHHHcCCCcCCceeecCCCCeeeEECCEEEEEeC
Confidence            3447899999863      4689999876332111   2677888999999973 444433221        1   6899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCc-----hhHHH-HHHHHHH---HhhccCccc----cccc---
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-----LLWDR-LRKWVSV---AKSFCSAKD----AKEF---  176 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~-----~~~~~-l~~~~~~---~~~~~~~~~----~~~~---  176 (267)
                      |++|+.    ...+...+.++|+.||+||..........     ..++. ...|...   +.......+    ..++   
T Consensus        87 wi~G~~----~~~~~~~~~~~~~~LA~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~fe~~  162 (309)
T TIGR02904        87 WLDIER----NEERNYQHESMFQELALLHRKTVKTERVTEEELKKHYERTLSRWENIPEGLEEFIVEAEAKWYMSPFELQ  162 (309)
T ss_pred             Cccccc----ccCCHHHHHHHHHHHHHHHHhhhCCCcccHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            999943    22334568999999999999987421110     11111 1222211   111000000    0000   


Q ss_pred             -------chhhHHHHHHHHHHhC----CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhhe
Q 024452          177 -------CLYTLKDEISMLEKEL----PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLI  245 (267)
Q Consensus       177 -------~~~~l~~~~~~l~~~l----~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~  245 (267)
                             ..+.+...++.+.++.    .....+.++||||++++|+|++++ +.+.+||||+|+++++.+|+|..-.-++
T Consensus       163 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~lcHgD~~~~Nvl~~~~-~~~~iIDfd~~~~d~~~~DLa~~~~~~~  241 (309)
T TIGR02904       163 ACTYYHEVMQAAEFAQNKLEDWHEATKEKESWRTVLVHGKLSLSHFLYDET-RGGYFINFEKASFASPLTDLAAFFRRSF  241 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeCCCCcHHhEEEcCC-CCEEEEEhhhcccCCcHHHHHHHHHHHH
Confidence                   0123333333333321    123567899999999999999864 5789999999999999999874433344


Q ss_pred             eeeccCCchhHhHHHHHHh
Q 024452          246 LTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~  264 (267)
                      .....+ ......+++.|.
T Consensus       242 ~~~~~~-~~~~~~~l~~Y~  259 (309)
T TIGR02904       242 GTYPQP-IDEMFEWFYTYE  259 (309)
T ss_pred             hhCCCC-hHHHHHHHHHHH
Confidence            332222 233566777664

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PRK06148 hypothetical protein; Provisional

Probab=99.72  E-value=2e-16  Score=158.43  Aligned_cols=235  Identities=12%  Similarity=0.105  Sum_probs=148.5

Q ss_pred             ccccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHH
Q 024452            6 TELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDE   85 (267)
Q Consensus         6 ~~~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E   85 (267)
                      +.--|..+.+++.+++.++++- .        -++++| +|..|.||+|+..     ++..||+|++++... ....+.|
T Consensus         5 ~~~~p~~s~~~~~~~~~~~ygl-~--------~~~~~L-~s~~d~nf~v~~~-----~g~~yVLKi~~~~~~-~~~~~~q   68 (1013)
T PRK06148          5 SHPAPEFTTKDAEALLAQHFGI-S--------ATATPL-DGERDLNFRLTTD-----DGADYILKIVNPSEP-RVESDFQ   68 (1013)
T ss_pred             CCCCCCCCHHHHHHHHHHHcCC-c--------eEEeec-CCcCCceEEEEeC-----CCCeEEEEEcCCccc-hhHHHHH
Confidence            4456888999999999999763 2        256787 4567999999854     246899999976532 1122467


Q ss_pred             HHHHHHHHhC--CC-CceEEEEE----------CCe-----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCC
Q 024452           86 IRTFECMSSQ--GQ-GPRLLGRF----------GDG-----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPG  147 (267)
Q Consensus        86 ~~~~~~l~~~--gl-~P~v~~~~----------~~~-----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~  147 (267)
                      .+++.+|++.  |+ +|+++...          .+|     ++++|++|+++....-.++..++++|+.+++||.....+
T Consensus        69 ~~~L~hL~~~~~glpvP~~i~t~~G~~~~~v~~~~G~~~~vrLl~~l~G~~l~~~~~~t~~~~~~lG~~larlh~al~~F  148 (1013)
T PRK06148         69 TAALDHLAAVAPDLPVPRLIPSLSGASLASAQDPDGEPRLLRLLSWLPGTPLAEAAPRTEALLDNLGRALGRLDRALQGF  148 (1013)
T ss_pred             HHHHHHHHhhCCCCCcCeeeecCCCCeEEEeecCCCceEEEEEEeccCCCcHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            8899999987  76 58776431          122     579999999886522235678999999999999986433


Q ss_pred             CC----CchhHHH-HHHHHHHH-hhccCcccccccchhhHHHHHHHHHHhCC-C-CCCcEEEEccCCCCCCeeeeCCC--
Q 024452          148 PR----KALLWDR-LRKWVSVA-KSFCSAKDAKEFCLYTLKDEISMLEKELP-N-DHQEIGFCHNDLQYGNIMIDEET--  217 (267)
Q Consensus       148 ~~----~~~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~-~~~~~~l~H~Dl~~~Nilv~~~~--  217 (267)
                      ..    ....|.. -..|.... .....+     -....+.+.++.+.+.+. . ...|..+||||+++.||++++++  
T Consensus       149 ~~p~~~r~~~Wdl~~~~~l~~~l~~i~d~-----~~r~~l~~~~~~~~~~v~p~l~~Lp~~vIHgDln~~NiLv~~~~~~  223 (1013)
T PRK06148        149 MHPGALRDLDWDLRHAGRARDRLHFIDDP-----EDRALVERFLARFERNVAPRLAALPAQVIHNDANDYNILVDADDGE  223 (1013)
T ss_pred             CCCCcccccccccccchhhhhhhhhcCCH-----HHHHHHHHHHHHHHHHHHHHHhcCCcceECCCCCcccEEEcCCCCc
Confidence            21    1111110 00111111 111110     011233444444443211 1 35678899999999999999743  


Q ss_pred             CCEEEEeecccCcchHhHHHHhhh-hhheeeeccCCc-hhHhHHHHHHh
Q 024452          218 SSITIIVSFTFLQNMLNFKRACTK-ILLILTFSVNSP-MVCMRWLRILC  264 (267)
Q Consensus       218 ~~v~lIDwE~a~~~~~~fD~A~~~-~~~~~~~~~~~~-~~~~~~~~~~~  264 (267)
                      ...+||||++|.++++.||+|.+- |.++.   ...+ ...-.++++|+
T Consensus       224 ~isGiIDFgDa~~~~~v~DLAialay~~~~---~~~p~~~~~a~laGY~  269 (1013)
T PRK06148        224 RISGLIDFGDAVHAPRICEVAIAAAYAILD---HPDPIGAAAALVAGYH  269 (1013)
T ss_pred             ceEEEEECcccccccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHh
Confidence            235799999999999999976544 44432   1122 13345666665

>PRK10271 thiK thiamine kinase; Provisional

Probab=99.71  E-value=7.8e-17  Score=130.60  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=88.7

Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      ++.+|++|++++..     ....+++..+++||+.+..+. ..++++.+++|..++.....       ....+ ..+..+
T Consensus         1 llv~Wl~Ge~~~~~-----~~~~~La~~l~~LH~~p~~~~-~~~l~~~i~~Yw~~l~~~~~-------~~~wl-~~~~~~   66 (188)
T PRK10271          1 MAVDYLPGEVKSYL-----PDTNELAGLLYHLHQQPRFGW-RITLLPLLEQYWQQSDPARR-------TPFWL-RMLKRL   66 (188)
T ss_pred             CcccccCCCcCCCc-----cCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHhccccC-------CHHHH-HHHHHH
Confidence            35799999998754     236789999999999887433 35899999999887643211       11233 356666


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                      +......+.+.++||||++|+|+++.++  ++.+||||||+.|++.+|+|+
T Consensus        67 ~~~~~~~~l~~~p~H~D~~~~N~~~~~~--~~~lIDwe~a~~gDp~~DLa~  115 (188)
T PRK10271         67 RKAGEPRPLRLAPLHMDVHAGNLVHSAS--GLRLIDWEYAGDGDIALELAA  115 (188)
T ss_pred             HhcccCCCCCeeeecCCCCCccEEEECC--CEEEEeCCcccCCCHHHHHHH
Confidence            6666567788999999999999999863  489999999999999999887

>PRK06149 hypothetical protein; Provisional

Probab=99.70  E-value=4.1e-16  Score=155.99  Aligned_cols=235  Identities=11%  Similarity=0.110  Sum_probs=146.1

Q ss_pred             ccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHH
Q 024452            8 LLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIR   87 (267)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~   87 (267)
                      --|..+.+++.+++.++++- .        -++.++ +|..|.||+|++.      +++||+|++++.-.. .....|.+
T Consensus        13 ~~p~ls~~~~~~ll~~~ygl-~--------~~~~~L-~s~~d~nf~v~t~------~~~yVLKi~~~~~~~-~~l~~e~~   75 (972)
T PRK06149         13 PAPDVSEAQAERILAEHYGL-S--------GTLTEL-GSQQDRNFRVDSD------GGRFVLKICHAAYAA-VELEAQHA   75 (972)
T ss_pred             CCCCCCHHHHHHHHHHhcCC-c--------eEEEec-CCcCcceEEEEec------CCcEEEEeCCccCCh-HHHHHHHH
Confidence            34667889999999877652 1        256777 4667999999853      368999998754221 22357888


Q ss_pred             HHHHHHhC--CC-CceEEEEEC-----------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCC
Q 024452           88 TFECMSSQ--GQ-GPRLLGRFG-----------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK  150 (267)
Q Consensus        88 ~~~~l~~~--gl-~P~v~~~~~-----------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~  150 (267)
                      ++.+|++.  |+ +|+++-...           .+   ++++|++|.++....-.++..++++|+.+++||.....+...
T Consensus        76 ~l~hL~~~~~glpvp~pi~t~~G~~~~~~~~~g~~~~vrL~~~l~G~~~~~~~~~~~~~~~~lG~~lArlh~al~~f~hp  155 (972)
T PRK06149         76 ALRHLAEREPALRVPVVIPALDGEELLTLDVRGQGLRVRLLDYLPGQPLTRLGHLAPASVAGLGALCARVARALADFDHP  155 (972)
T ss_pred             HHHHHHhhCCCCCCceeeECCCCCeEEEEecCCceEEEEEEEecCCccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999998  76 477664211           11   689999998886532236678999999999999987644321


Q ss_pred             ----chhHHH--HHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC--CCCcEEEEccCCCCCCeeeeCCC-C---
Q 024452          151 ----ALLWDR--LRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN--DHQEIGFCHNDLQYGNIMIDEET-S---  218 (267)
Q Consensus       151 ----~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~--~~~~~~l~H~Dl~~~Nilv~~~~-~---  218 (267)
                          ...|..  .....+.+.......    -....+.+.++.+.+.+..  ...+..+||||++..||++++++ +   
T Consensus       156 ~~~r~~~Wdl~~~~~~~~~ll~~i~d~----~~r~~l~~~~~~~~~~l~~~~~~L~~g~IH~Dl~~~Nilv~~~~~~~~~  231 (972)
T PRK06149        156 GLDRTLQWDLRHAGPVVAHLLSHITDP----AQRARIAEATRDAARRLQPLAPALPLQAVHLDITDDNVVGSRDADGRWQ  231 (972)
T ss_pred             CCCCccccchhhhHHHHHHHHhhcCCH----HHHHHHHHHHHHHHHHhhhhhhhCcccccCCCCCcccEEEcCCCCCCcc
Confidence                011110  000001110000000    0112334444444433322  35688999999999999998642 1   


Q ss_pred             CEEEEeecccCcchHhHHHHhhhhhheeeeccCCchhHhHHHHHHh
Q 024452          219 SITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       219 ~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                      ..+||||++|.++++.||+|.+-..++..... .+.....|+++|.
T Consensus       232 v~giIDFgD~~~~~~i~DLAial~~~~~~~~~-dp~~~~~~l~GY~  276 (972)
T PRK06149        232 PDGVIDFGDLVRTWRVADLAVTCASLLHHAGG-DPFSILPAVRAYH  276 (972)
T ss_pred             eeEEEEcccchhhhHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHH
Confidence            24899999999999999966433333321111 2333466888874

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.69  E-value=3.7e-16  Score=128.72  Aligned_cols=201  Identities=12%  Similarity=0.195  Sum_probs=141.0

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC
Q 024452           16 ELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ   95 (267)
Q Consensus        16 ~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~   95 (267)
                      .+-+.+.+.++.       .+....++++||..|+-|+|...      ..+||+|.+......++  ..|+.-++.+++.
T Consensus         4 ~i~~qlse~~g~-------~~i~er~~v~gG~inea~~v~dg------~~~~FvK~n~~~~~~~f--~AEa~gL~~la~s   68 (286)
T COG3001           4 AISQQLSEQLGE-------GEIKEREEVSGGDINEAWRLRDG------TDPFFVKCNQREQLSMF--TAEADGLELLARS   68 (286)
T ss_pred             HHHHHHHHHhCc-------hhhhcccccCCccccceeEeecC------CcceEEEecchhhHHHH--HHHHHHHHHHHhc
Confidence            345566666654       24457889999999999999742      47999999754322233  3899999999998


Q ss_pred             C-C-CceEEEEECCe----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC------------CCchhH-HH
Q 024452           96 G-Q-GPRLLGRFGDG----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP------------RKALLW-DR  156 (267)
Q Consensus        96 g-l-~P~v~~~~~~~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~------------~~~~~~-~~  156 (267)
                      + + +|+|+..+...    .|++|+|=.+++.      .-..++|+.||+||+...+..            ..++.| ++
T Consensus        69 ~ti~VP~vi~~G~~~~~sylVle~L~~~~~d~------~~~~~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~  142 (286)
T COG3001          69 NTITVPKVIAVGASRDHSYLVLEYLPTGPLDA------HSAFILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRR  142 (286)
T ss_pred             CCccccceEEecCCCCeeEEEEeeccCCCCCc------hhHHHHHHHHHHHHhhcCccccCcccccccCCCCCCCCCcch
Confidence            7 4 69999987532    8999998656653      236799999999999864311            123433 23


Q ss_pred             HHHHHHHHh-----hccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          157 LRKWVSVAK-----SFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       157 l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      |..|+..-+     ++..+   +..++..+...++.+.+.+.+....+.++||||+.+|.++..+ + .+++|-- |.+|
T Consensus       143 Wa~FfaeqRig~qlqlar~---rg~~f~did~~~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~-G-Pv~fDPA-~y~G  216 (286)
T COG3001         143 WATFFAEQRIGWQLQLARE---RGLTFGDIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKD-G-PVIFDPA-CYWG  216 (286)
T ss_pred             HHHHHHHhhhhHHHHHHHH---hCCCccCHHHHHHHHHHHHhcCCCCcceeecccccccccccCC-C-Ceeeccc-cccC
Confidence            444433211     01101   1224556666667777777666667899999999999999864 4 8999987 7789


Q ss_pred             hHhHHHHhhhhh
Q 024452          232 MLNFKRACTKIL  243 (267)
Q Consensus       232 ~~~fD~A~~~~~  243 (267)
                      +|++|+|++++.
T Consensus       217 DrE~Dlam~elF  228 (286)
T COG3001         217 DRECDLAMLELF  228 (286)
T ss_pred             Ccccceehhhhh
Confidence            999999998874

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.61  E-value=2.2e-14  Score=111.52  Aligned_cols=143  Identities=23%  Similarity=0.340  Sum_probs=105.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC-CCCceEEEEECC----eeEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ-GQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~-gl~P~v~~~~~~----~~v~e~i  114 (267)
                      +.++..|..|.+|++...      +..+++|....... ..+...|..+++.++.. ...|+++.....    .++++|+
T Consensus         3 ~~~i~~g~~~~v~~~~~~------~~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK------DEDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEec------CCeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            466889999999999853      37899998765432 12235899999999887 457888877653    2899999


Q ss_pred             cCCCCCcc-cCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          115 HARTLSAA-DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       115 ~G~~l~~~-~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      +|..+... ......+..++++.++.+|....                                                
T Consensus        76 ~g~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~------------------------------------------------  107 (155)
T cd05120          76 EGETLDEVSEEEKEDIAEQLAELLAKLHQLPL------------------------------------------------  107 (155)
T ss_pred             CCeecccCCHHHHHHHHHHHHHHHHHHhCCCc------------------------------------------------
Confidence            99776532 01112345555556666665422                                                


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhh
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKIL  243 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~  243 (267)
                           .+++|+|++++||++++ .+.+.++||+.|.++++.+|.+++-+.
T Consensus       108 -----~~i~H~Dl~~~Nil~~~-~~~~~l~Df~~~~~~~~~~d~~~~~~~  151 (155)
T cd05120         108 -----LVLCHGDLHPGNILVDD-GKILGIIDWEYAGYGPPAFDLAAALLF  151 (155)
T ss_pred             -----eEEEecCCCcceEEEEC-CcEEEEEecccccCCChHHHHHHHHHH
Confidence                 68999999999999997 467999999999999999998875443

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG4857 Predicted kinase [General function prediction only]

Probab=99.41  E-value=5.8e-13  Score=112.65  Aligned_cols=217  Identities=15%  Similarity=0.099  Sum_probs=130.1

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEE-------EcCCCcccccCh-HHHHHHHHHHHhC--CCCceEEEEE
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVR-------IYGEGVEVFFNR-DDEIRTFECMSSQ--GQGPRLLGRF  105 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlR-------i~~~~~~~~~dr-~~E~~~~~~l~~~--gl~P~v~~~~  105 (267)
                      ..+++..|..|--|-+|.|+-..    .++..++|       .-+..+..-++| ..|+.++..=+++  |++|++|.++
T Consensus        31 s~ltvkEIGDGNlNyvF~V~~~~----~~ka~ivKQA~py~r~vGeswPL~l~Rs~iE~~aL~rq~~~aPh~VPeIyf~D  106 (408)
T COG4857          31 SHLTVKEIGDGNLNYVFIVEGKI----GGKAAIVKQALPYVRLVGESWPLPLKRSFIEYHALRRQNARAPHFVPEIYFFD  106 (408)
T ss_pred             cceEEEEecCCceeEEEEEecCC----CCeehhhhhhhhHHHhcCCcCCCcchHHHHHHHHHHHhhccCCCCcceeEeec
Confidence            66899999999999999997432    23455555       334444544555 4688888766655  6789999988


Q ss_pred             CCe--eEEEeecCCCCCc----ccCCChHHHHHHHHHHHh--hccCCCCCCCCchhHHHHHHHHHHHhhccC-------c
Q 024452          106 GDG--RVEEFIHARTLSA----ADIRDPKISELVAAKMRE--FHDLKMPGPRKALLWDRLRKWVSVAKSFCS-------A  170 (267)
Q Consensus       106 ~~~--~v~e~i~G~~l~~----~~l~~~~i~~~la~~La~--lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~  170 (267)
                      +.-  .+||++.-...-+    +.-.-|++...+|..|++  |........+ ..-...+..|.+  .++|.       .
T Consensus       107 e~mavivMEdls~~kilR~~LI~Gr~~P~~~~~igeFlarTLf~~sDl~m~~-k~kK~~vk~FtN--pELCDItE~LVFt  183 (408)
T COG4857         107 EIMAVIVMEDLSPHKILRRALIDGRILPNIVDDIGEFLARTLFRGSDLSMNT-KDKKADVKLFTN--PELCDITENLVFT  183 (408)
T ss_pred             chhhhhhHhhhhHHHHHHHHHhccccCccHHHHHHHHHHHHHHhccccccch-HhHHHHHHHhCC--chhhcchhceeec
Confidence            743  7788874322211    111125677788888776  2222211110 000011111110  01110       0


Q ss_pred             c-------------cccc-----cchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          171 K-------------DAKE-----FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       171 ~-------------~~~~-----~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      +             +.++     +.-+.+.-++.+|++.+.  .....+||||+|.|-|++++  ....+||-|||-|||
T Consensus       184 dPyfd~d~Nr~~~~~l~~fVe~L~~n~dlkvea~kLk~~F~--~~aetLiHGDLHsGSIfvte--~etkvIDPEFaFYGP  259 (408)
T COG4857         184 DPYFDADRNRHTIPQLDPFVEELRKNRDLKVEAQKLKHKFM--AYAETLIHGDLHSGSIFVTE--KETKVIDPEFAFYGP  259 (408)
T ss_pred             CccccccccccccccchHHHHHHhcCcchhhhHHHHHHHHH--HHhHHHhccccccCcEEeec--CcceeeCccccccCc
Confidence            0             0000     011234444555665543  44567999999999999985  478999999999999


Q ss_pred             HhHH-HHhhhhhheeeeccCCch-------hHhHHHHHH
Q 024452          233 LNFK-RACTKILLILTFSVNSPM-------VCMRWLRIL  263 (267)
Q Consensus       233 ~~fD-~A~~~~~~~~~~~~~~~~-------~~~~~~~~~  263 (267)
                      .+|| ...+..+-+|++|+.-+|       .++.||-.-
T Consensus       260 mafDiG~~iaNl~~~~~s~~g~~~~~~krd~~r~~L~e~  298 (408)
T COG4857         260 MAFDIGMLIANLWMSLFSQKGFEEDSGKRDEMRAYLLEC  298 (408)
T ss_pred             chhhHHHHHHHHHHHHHhhhchhhcccchHHHHHHHHHH
Confidence            9999 444555567888877776       345566543

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.30  E-value=5.7e-11  Score=97.78  Aligned_cols=133  Identities=15%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc------Ch-HHHHHHHHHHHhCCC-CceEEEEECC--eeE
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF------NR-DDEIRTFECMSSQGQ-GPRLLGRFGD--GRV  110 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~------dr-~~E~~~~~~l~~~gl-~P~v~~~~~~--~~v  110 (267)
                      |..|-.+.+|++...      +..+++|.......  ...      .+ .+|.+++..+...|+ .|.++....+  .++
T Consensus         2 ig~G~~~~vy~~~~~------~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv   75 (199)
T TIGR03724         2 IAKGAEAIIYLGDFL------GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIV   75 (199)
T ss_pred             CCCCceEEEEEeecC------CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEE
Confidence            466778999999742      46788887543210  001      11 368999999998885 6888887765  389


Q ss_pred             EEeecCCCCCcccCCCh-HHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDP-KISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~-~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++|++|.++........ .++.++++.|+.+|+.                                              
T Consensus        76 ~e~~~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~----------------------------------------------  109 (199)
T TIGR03724        76 MEYIEGKPLKDVIEEGNDELLREIGRLVGKLHKA----------------------------------------------  109 (199)
T ss_pred             EEEECCccHHHHHhhcHHHHHHHHHHHHHHHHHC----------------------------------------------
Confidence            99999987653110011 3344444444444431                                              


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                                .++|+|++|+||+++  ++.+.+|||+.|..+.+..|.+.
T Consensus       110 ----------gi~H~Dl~~~Nil~~--~~~~~liDfg~a~~~~~~~~~~~  147 (199)
T TIGR03724       110 ----------GIVHGDLTTSNIIVR--DDKLYLIDFGLGKYSDEIEDKAV  147 (199)
T ss_pred             ----------CeecCCCCcceEEEE--CCcEEEEECCCCcCCCcHHhhhc
Confidence                      379999999999998  36899999999999888887553

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.3e-10  Score=95.72  Aligned_cols=193  Identities=16%  Similarity=0.133  Sum_probs=127.5

Q ss_pred             EEEEEecCceee-eeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEECC----eeEE
Q 024452           38 LQVIPLKGAMTN-EVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFGD----GRVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N-~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~~----~~v~  111 (267)
                      .+..++..|.+. .+|++....     ...+++|+-..+...  .-+.|.+-+++++..|+ +|.|++...+    ++++
T Consensus        21 ~~w~~v~~geS~~~v~rl~a~~-----r~g~~~k~~~~~~~a--~L~~Ea~RlrWla~~~l~~P~V~~~~~~~~~~wLl~   93 (266)
T COG3231          21 RRWRRVTEGESGAGVFRLFADS-----RPGLYLKIASSGPAA--ELEGEAARLRWLAGQGLGCPRVLGLEDDADQAWLLM   93 (266)
T ss_pred             CccceeeccCCCCeEEEEeccC-----CCceEEEEecCcchh--hhhhHHHHHHHhcccCCCCCceEeeccCcchhHHhh
Confidence            345556656555 889987532     467788886544322  22489999999999998 5999998763    3889


Q ss_pred             EeecCCCCCccc--CCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhc---cCcc--ccc-ccchhhHHH
Q 024452          112 EFIHARTLSAAD--IRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSF---CSAK--DAK-EFCLYTLKD  183 (267)
Q Consensus       112 e~i~G~~l~~~~--l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~--~~~-~~~~~~l~~  183 (267)
                      .-++|.++....  +.....+..+|+.|+.||.+++..++   +-..+..+++.+...   ..-.  +.. ...-....+
T Consensus        94 salpG~~~s~~~~~~~p~r~v~~la~aLR~LH~l~~~aCP---Fd~rl~~rl~~a~~r~~a~~vdesdfd~e~qgr~~~E  170 (266)
T COG3231          94 SALPGEDASHPRYALDPKRAVPLLAEALRRLHELPVEACP---FDRRLARRLAKARARVRAGLVDESDFDEERQGRTAEE  170 (266)
T ss_pred             hhcCCCcccchhhcCCHHHHHHHHHHHHHHHhcCChhhCC---cchHHHHHHHHHHHHHhccCCChhhcChhhcCCCHHH
Confidence            999999887644  33345788999999999998764332   112333444433211   1000  000 001123444


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhh
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKI  242 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~  242 (267)
                      .++.|+... ....+.|+||||.=.=|+|+++. +--++||++..+++.|..|+|...+
T Consensus       171 l~d~L~~~r-p~~edLVv~HGDACLPN~i~d~~-rf~GfIDlGrlGVaDRh~DLala~~  227 (266)
T COG3231         171 LFDELEARR-PAVEDLVVTHGDACLPNFILDGW-RFSGFIDLGRLGVADRHQDLALATW  227 (266)
T ss_pred             HHHHHHhcC-CchhhceeecCcccCcceEecCC-ceEEeeecCcccchHHHHhHHHHHH
Confidence            555555433 34677999999999999999974 5568999999999999999554333

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=99.24  E-value=7.4e-11  Score=100.69  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=116.3

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHH---HHHHHHHhCCCCceEEEEEC--CeeEEEee-c
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEI---RTFECMSSQGQGPRLLGRFG--DGRVEEFI-H  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~---~~~~~l~~~gl~P~v~~~~~--~~~v~e~i-~  115 (267)
                      ++.+|.++.|+.|...     ++...++|+..+....    ..|.   .+++...-.|. .+++..++  +.+++|++ +
T Consensus         9 ~~~~g~~s~V~pv~~~-----dG~~avLKl~~p~~~~----~~E~~g~~~L~~w~G~Ga-Vrll~~d~~~~AlLLErl~~   78 (253)
T PF04655_consen    9 PPAHGSSSLVVPVRRA-----DGTPAVLKLAPPHAEA----EHEARGEAALRWWNGRGA-VRLLAADPERGALLLERLDP   78 (253)
T ss_pred             CCCCCcceEEEEEEcC-----CCCeEEEEecCCcccc----hhhhhHHhHhheeCCCCc-eeeeccccccchhhhhhccC
Confidence            4578999999999854     3689999998765421    1344   55776666664 58888874  33889999 6


Q ss_pred             CCCCCcccC--CChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhH-HHHHHHHHHhC
Q 024452          116 ARTLSAADI--RDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTL-KDEISMLEKEL  192 (267)
Q Consensus       116 G~~l~~~~l--~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~l  192 (267)
                      |.++..-..  .+.+-...++..+++||.......  |.-+..+.+|........... ... ....+ .......++.+
T Consensus        79 g~~L~~~~~~g~d~~a~~i~a~l~~~L~~~~~~~~--p~~l~~l~~~~~~l~~~~~~~-~~~-~~~~l~~~a~~~~~~Ll  154 (253)
T PF04655_consen   79 GRSLASLPREGDDDEATRIAAGLLRRLHRPAPEPL--PSGLPPLADWFARLFARARER-AGA-PPRRLVDAAAALARELL  154 (253)
T ss_pred             CCchhhcccccCchHHHHHHHHHHHHHhCCCCCCC--CccchhHHHHHHHHHHHhHhh-hcc-ccHHHHHHHHHHHHHHh
Confidence            777764321  245667889999999999754221  121233444544332221110 000 11223 33333333333


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                       ....+.+++|||+|++|||-.+ .+.-..||-. .-.|.++||.+-+
T Consensus       155 -~~~~~~~lLHGDLH~~NIL~~~-~~~WlaIDPk-gl~Gdp~yd~a~~  199 (253)
T PF04655_consen  155 -ASPGEEVLLHGDLHHGNILAAG-RRGWLAIDPK-GLVGDPAYDLAPL  199 (253)
T ss_pred             -cCCCcceeeccccchHhhhccC-CCCceEeCCc-ccccccccCHHHH
Confidence             4556779999999999999775 2568899998 6679999997763

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=99.23  E-value=4.6e-10  Score=102.47  Aligned_cols=217  Identities=13%  Similarity=0.136  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEEe--cCceeeeeEEEEeCCCC----CCCCceEEEEEcCCCc--------c---
Q 024452           15 EELKKVLQSVASDWGDVIDDSDALQVIPL--KGAMTNEVYQIAWPAKN----NGLARNVLVRIYGEGV--------E---   77 (267)
Q Consensus        15 ~~~~~l~~~~~p~w~~~~~~~~~~~i~~l--~~G~~N~vy~v~~~~~~----~~~~~~~vlRi~~~~~--------~---   77 (267)
                      +++.+-+++.+..=...   ++..++..|  ..|+...+.+|+....+    ..-..++++||...-.        .   
T Consensus        16 ~dve~~l~~~l~t~a~~---g~~~~~~~Igdg~GFmS~I~lV~~dW~~~~~~~~LP~k~vlKI~S~~~~~~~~~~~~~~~   92 (414)
T PF07914_consen   16 EDVEEALQEALGTKAKF---GENKKATNIGDGKGFMSRIALVEPDWTGEEEDENLPKKFVLKIPSQLALRALSENMKFEG   92 (414)
T ss_pred             HHHHHHHHHHhCCCcCc---CCCcceeeccCCcchheeEEEEEeeeccCccccCCCceEEEEeccHhhHHHHHHhhcccc
Confidence            66777777776431111   244567777  46889999999864431    1125799999985210        0   


Q ss_pred             -cccCh---------------HHHHHHHHHHHhC---CC-CceEEEEEC-------Ce-eEEEeecCCC-CCcccCCChH
Q 024452           78 -VFFNR---------------DDEIRTFECMSSQ---GQ-GPRLLGRFG-------DG-RVEEFIHART-LSAADIRDPK  128 (267)
Q Consensus        78 -~~~dr---------------~~E~~~~~~l~~~---gl-~P~v~~~~~-------~~-~v~e~i~G~~-l~~~~l~~~~  128 (267)
                       ..++-               -+|..+-+.+.+.   ++ .|++|+.-+       .| +++||+++.. ...-.--+++
T Consensus        93 ~~~~~~e~~~~~~~~~l~~~HNrEv~~Y~~~~k~~~~~l~~PKvY~~k~f~~en~~kG~IimE~ven~~~~~~~e~~~~e  172 (414)
T PF07914_consen   93 GKGFDEEKEWEEFEKFLREMHNREVNFYKIFEKFNHPNLPYPKVYFGKKFDEENKLKGFIIMEYVENVHSMDMYENLSVE  172 (414)
T ss_pred             ccccchhhHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCCCCceeEEEecCCCCCCCCEEEEeccCCceeecccCCCCHH
Confidence             00000               1466666676665   33 599998642       14 8899999853 3322222345


Q ss_pred             HHHHHHHHHHhhccCCCCCCC-------Cchh-HHH---------HHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          129 ISELVAAKMREFHDLKMPGPR-------KALL-WDR---------LRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       129 i~~~la~~La~lH~~~~~~~~-------~~~~-~~~---------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ...+++++||+||+.....+.       .+++ ...         +..++........     ....+.+.+.++.++..
T Consensus       173 ql~~iv~aLA~~~A~sl~ls~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~i~~~~~~  247 (414)
T PF07914_consen  173 QLLQIVRALAKFHALSLKLSEEEKKSISGPDFLEEMFGEFFSEEGMKKIFENLRKIFG-----FFSPEKLEELIEKFEHY  247 (414)
T ss_pred             HHHHHHHHHHHHHHhHccCCHHHhhhccCchHHHHHHHHHhchHHHHHHHHHHHhhcc-----ccChHHHHHHHHHHHHh
Confidence            678999999999998764211       1112 111         2222222211110     00123333333333322


Q ss_pred             C-------------CCCCCcEEEEccCCCCCCeeeeCCCC---C-EEEEeecccCcchHhHHHHh
Q 024452          192 L-------------PNDHQEIGFCHNDLQYGNIMIDEETS---S-ITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       192 l-------------~~~~~~~~l~H~Dl~~~Nilv~~~~~---~-v~lIDwE~a~~~~~~fD~A~  239 (267)
                      +             ...+.+.||||||+|+.|||++.+++   . ..||||..++.|.++.|++.
T Consensus       248 ~~~~~~~~~~~~i~~~lG~~~VL~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~vh~G~~~eDl~R  312 (414)
T PF07914_consen  248 LPDIKNFEKASNINKQLGIKPVLVHGDLWSSNILWDKDSDGKLKLKAIIDWQCVHRGSPAEDLAR  312 (414)
T ss_pred             cccHHhHHHHhhhHHhcCCCcceecCCccHHheeeecCCchhHHHHHHHHHHHhhcCchHHHHHH
Confidence            1             11356899999999999999997543   2 35999999999999999887

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.23  E-value=1.9e-10  Score=95.41  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-------ChHHHHHHHHHHHhCCC-CceEEEEECCe--
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-------NRDDEIRTFECMSSQGQ-GPRLLGRFGDG--  108 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-------dr~~E~~~~~~l~~~gl-~P~v~~~~~~~--  108 (267)
                      ..|..|....+|++...      +..+++|+..+...  ...       ...+|.+++..+...|+ .|.++....+.  
T Consensus         2 ~~l~~G~~~~vy~~~~~------~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~   75 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFL------GIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFI   75 (211)
T ss_pred             cccccCceEEEEEEeeC------CCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCE
Confidence            35678889999999742      46788887543221  001       12468888999988886 58887665432  


Q ss_pred             eEEEeecCCCCCcccCC----ChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          109 RVEEFIHARTLSAADIR----DPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~----~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      ++++|++|.++......    ...++.+++..|+.+|                                           
T Consensus        76 lv~e~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH-------------------------------------------  112 (211)
T PRK14879         76 IVMEYIEGEPLKDLINSNGMEELELSREIGRLVGKLH-------------------------------------------  112 (211)
T ss_pred             EEEEEeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence            89999999876421000    0011111111111111                                           


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                                   ...++|+|++|+|||++  ++.+.+|||+.|..+...+|.+.
T Consensus       113 -------------~~~i~H~Dl~p~Nil~~--~~~~~liDf~~a~~~~~~~~~~~  152 (211)
T PRK14879        113 -------------SAGIIHGDLTTSNMILS--GGKIYLIDFGLAEFSKDLEDRAV  152 (211)
T ss_pred             -------------hCCcccCCCCcccEEEE--CCCEEEEECCcccCCCcHHhhhc
Confidence                         12479999999999998  35799999999999888877543

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=99.19  E-value=4.4e-10  Score=98.35  Aligned_cols=195  Identities=14%  Similarity=0.125  Sum_probs=107.3

Q ss_pred             CceeeeeEEEEeCC----CCCCCCceEEEEEcCCCcc--cccC----hHHHHHHHHHHH----hC--------CCCceEE
Q 024452           45 GAMTNEVYQIAWPA----KNNGLARNVLVRIYGEGVE--VFFN----RDDEIRTFECMS----SQ--------GQGPRLL  102 (267)
Q Consensus        45 ~G~~N~vy~v~~~~----~~~~~~~~~vlRi~~~~~~--~~~d----r~~E~~~~~~l~----~~--------gl~P~v~  102 (267)
                      .|+...+|+|+...    .......++|+|.......  ....    -.+|+.+-+.+.    +.        ...|+.|
T Consensus         3 d~y~s~~~rv~v~~~~~~~~~~~~~s~ivK~~p~~~~~~~~~~~~~~f~~E~~fY~~~~p~l~~~~~~~~~~~~~~P~~~   82 (294)
T PF02958_consen    3 DNYLSDMYRVTVTYELKGDGKNEPLSLIVKSPPTNPSRREFLREMGSFRREIFFYRELLPELEELQKEAGDPFKFFPKCY   82 (294)
T ss_pred             CcceeEEEEEEEEEEEccCCCceEEEEEEEeCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccceeeceEE
Confidence            57788888887643    1122357899998752211  1111    146766554332    21        2468888


Q ss_pred             EEEC----CeeEEEeec--C-CCCCcccCCChHHHHHHHHHHHhhccCCCCCC-CCc-------------hhHH-----H
Q 024452          103 GRFG----DGRVEEFIH--A-RTLSAADIRDPKISELVAAKMREFHDLKMPGP-RKA-------------LLWD-----R  156 (267)
Q Consensus       103 ~~~~----~~~v~e~i~--G-~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-~~~-------------~~~~-----~  156 (267)
                      +...    .-+|+|-+.  | +......--+.+-+..+.+.||+||+...... ..+             ....     .
T Consensus        83 ~~~~~~~~~~lvlEDL~~~g~~~~~~~~~l~~~~~~~~l~~LA~fHA~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
T PF02958_consen   83 YADEDPGDEVLVLEDLSEKGYRMGDRRDGLDLEHAELVLKKLAKFHAASWALEEKDPELFEELSSGLFEEPFFREELEEW  162 (294)
T ss_pred             EeccCCCceeeehhhhhhcCCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhccccceeccchhhhhhHH
Confidence            8763    237888884  4 23333233345668899999999999863110 000             0000     1


Q ss_pred             HHHHHH----HHhhcc-Ccc-ccccc--chhhHH-HHHHHHHHhC-CCCCCcEEEEccCCCCCCeeeeCCCC----CEEE
Q 024452          157 LRKWVS----VAKSFC-SAK-DAKEF--CLYTLK-DEISMLEKEL-PNDHQEIGFCHNDLQYGNIMIDEETS----SITI  222 (267)
Q Consensus       157 l~~~~~----~~~~~~-~~~-~~~~~--~~~~l~-~~~~~l~~~l-~~~~~~~~l~H~Dl~~~Nilv~~~~~----~v~l  222 (267)
                      ...+..    ...+.. ... +....  .+..+. ...+.+.... .......|+||||+|.+|||+..++.    .+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nNilf~~~~~g~~~~~~l  242 (294)
T PF02958_consen  163 FEEFFEQGLKAFIESLDDEWPEYEEYSEKLEALLDKFFERMQELVDPSKEPFNVLCHGDFWTNNILFKYDDDGKPIDVVL  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHhccccCCceEEEcCccCHHhEeEcccccccccccee
Confidence            111111    110000 000 00000  011111 1222333333 23566789999999999999976422    5899


Q ss_pred             EeecccCcchHhHHHHh
Q 024452          223 IVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       223 IDwE~a~~~~~~fD~A~  239 (267)
                      |||..+++|++.+|++.
T Consensus       243 iDfQ~~~~g~p~~Dl~~  259 (294)
T PF02958_consen  243 IDFQLARYGSPAIDLAY  259 (294)
T ss_pred             eccccccCCCcHhHHHH
Confidence            99999999999999887

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=3.2e-10  Score=91.10  Aligned_cols=139  Identities=19%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC------h-HHHHHHHHHHHhCCC-CceEEEEECCe--e
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN------R-DDEIRTFECMSSQGQ-GPRLLGRFGDG--R  109 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d------r-~~E~~~~~~l~~~gl-~P~v~~~~~~~--~  109 (267)
                      ++..|..+.+|...+-      +..+++|.--+..  ...+|      | .+|+.++..+...|+ +|.+|.++++.  +
T Consensus         3 ~i~~GAEa~i~~~~~~------g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I   76 (204)
T COG3642           3 LIKQGAEAIIYLTDFL------GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLI   76 (204)
T ss_pred             hhhCCcceeEEeeecc------CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEE
Confidence            4567888888888652      2457777532221  01112      2 479999999999997 59999999865  8


Q ss_pred             EEEeecCCCCCcc-cCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          110 VEEFIHARTLSAA-DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       110 v~e~i~G~~l~~~-~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +||||+|..+... .-..+++++++|+.+++||.                                              
T Consensus        77 ~me~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~----------------------------------------------  110 (204)
T COG3642          77 VMEYIEGELLKDALEEARPDLLREVGRLVGKLHK----------------------------------------------  110 (204)
T ss_pred             EEEEeCChhHHHHHHhcchHHHHHHHHHHHHHHh----------------------------------------------
Confidence            9999999876521 00123444444444444443                                              


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhhe
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLI  245 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~  245 (267)
                                ..+||||+.+.||++..  +.+.+|||..+.++.-.=|.|. |+.+|
T Consensus       111 ----------~givHGDLTtsNiIl~~--~~i~~IDfGLg~~s~~~Ed~aV-Dl~Vl  154 (204)
T COG3642         111 ----------AGIVHGDLTTSNIILSG--GRIYFIDFGLGEFSDEVEDKAV-DLHVL  154 (204)
T ss_pred             ----------cCeecCCCccceEEEeC--CcEEEEECCcccccccHHhhhc-hHHHH
Confidence                      33899999999999984  4699999999987655555444 44443

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.10  E-value=1.2e-09  Score=91.77  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             HHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccCh-------HHHHH
Q 024452           18 KKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNR-------DDEIR   87 (267)
Q Consensus        18 ~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr-------~~E~~   87 (267)
                      .++..+++..        .--.+..+++|.-+.||.+..      +.+++++|++.+..   ..+..+       ++|++
T Consensus        22 ~~~~~~~l~~--------~y~~~~~l~~~~f~~v~l~~~------~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~   87 (232)
T PRK10359         22 KEIFDDFLSY--------NIKTIKVFRNIDDTKVSLIDT------DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIV   87 (232)
T ss_pred             HHHHHHHhhC--------ceEEEEEecCCCceEEEEEec------CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHH
Confidence            4555566532        333566778888899999753      24689999997542   222222       47888


Q ss_pred             HHHHHHhCCC-CceEEEEEC----------CeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHH
Q 024452           88 TFECMSSQGQ-GPRLLGRFG----------DGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDR  156 (267)
Q Consensus        88 ~~~~l~~~gl-~P~v~~~~~----------~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~  156 (267)
                      .+..+.+.|+ +|..+....          ..++|||++|.++...           .       ..      ...   .
T Consensus        88 ~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~-----------~-------~~------~~~---~  140 (232)
T PRK10359         88 QTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDM-----------P-------EI------SED---V  140 (232)
T ss_pred             HHHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHh-----------h-------hc------cHH---H
Confidence            8899988897 476665432          1279999999876321           0       00      000   0


Q ss_pred             HHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          157 LRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       157 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                          .                 ..+...+..+        +...++|||++|+|+|++++ + +.||||..+..
T Consensus       141 ----~-----------------~~i~~~l~~l--------H~~gi~H~Dikp~Nili~~~-g-i~liDfg~~~~  183 (232)
T PRK10359        141 ----K-----------------AKIKASIESL--------HQHGMVSGDPHKGNFIVSKN-G-LRIIDLSGKRC  183 (232)
T ss_pred             ----H-----------------HHHHHHHHHH--------HHcCCccCCCChHHEEEeCC-C-EEEEECCCccc
Confidence                0                 0111112222        23469999999999999974 4 99999876654

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.95  E-value=1.8e-08  Score=81.04  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=93.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc------ccccCh---HHHHHHHHHHHhCCC-CceEEEEECCe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV------EVFFNR---DDEIRTFECMSSQGQ-GPRLLGRFGDG  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~------~~~~dr---~~E~~~~~~l~~~gl-~P~v~~~~~~~  108 (267)
                      .+.++.+|....+++....      ++.+++|.-.+..      +..+.+   .+|+.++..+...|+ +|+++..+..+
T Consensus        11 ~l~likQGAEArv~~~~~~------Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~   84 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS------GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYG   84 (229)
T ss_pred             cceeeeccceeeEeeeccC------CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCC
Confidence            6788899999999998753      4788887533221      111222   478999988888997 69999988643


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        ++|||++|-.....-     +..         |....  . . +                          ..+.....
T Consensus        85 ~~i~ME~~~g~~~vk~~-----i~~---------~~~~~--~-~-d--------------------------~~~~~~~~  120 (229)
T KOG3087|consen   85 GQIYMEFIDGASTVKDF-----ILS---------TMEDE--S-E-D--------------------------EGLAELAR  120 (229)
T ss_pred             CeEEEEeccchhHHHHH-----HHH---------HccCc--c-c-c--------------------------hhHHHHHH
Confidence              899999883221100     000         00000  0 0 0                          00011111


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCE--EEEeecccCcchH----hHHHHhhhhhheeee
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSI--TIIVSFTFLQNML----NFKRACTKILLILTF  248 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v--~lIDwE~a~~~~~----~fD~A~~~~~~~~~~  248 (267)
                      .+.+.+ ..-+..-+|||||...|||+.+++.++  .+|||..+.++-.    +-|+-+++-.++++-
T Consensus       121 ~iG~~i-gklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~~EDKgVDLYVlErA~lsTh  187 (229)
T KOG3087|consen  121 RIGELI-GKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRLPEDKGVDLYVLERAVLSTH  187 (229)
T ss_pred             HHHHHH-HHhhhCCeecccccccceEEecCCCcCceEEEeecchhcccCcccccceeeeehHhHhccC
Confidence            111111 112445599999999999998765554  8999999887543    333334444444443

>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]

Probab=98.92  E-value=2.9e-09  Score=91.01  Aligned_cols=172  Identities=14%  Similarity=0.033  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhCCC-CceEEEEEC-Ce-eEEEeecCCCCC-cccCCChHHHHHHHHHHHhhccCCCCCC---------CC
Q 024452           84 DEIRTFECMSSQGQ-GPRLLGRFG-DG-RVEEFIHARTLS-AADIRDPKISELVAAKMREFHDLKMPGP---------RK  150 (267)
Q Consensus        84 ~E~~~~~~l~~~gl-~P~v~~~~~-~~-~v~e~i~G~~l~-~~~l~~~~i~~~la~~La~lH~~~~~~~---------~~  150 (267)
                      .=+++...|...|+ +|++++.+- .| .+.|-+--++.- ...-...+.....+..|+.+|....|..         ..
T Consensus        69 ~Fvai~~lL~~~Gv~vPqIla~Dld~GfllLedLG~e~~l~~~g~~~~ery~~a~~ll~~~h~~~~~~q~~~~~g~~~~l  148 (351)
T COG3178          69 PFVAIAGLLAGQGVRVPQILAADLDQGFLLLEDLGRETFLQALGEPIAERYAAADALLAAAHGALVPLQKAVREGSTHVL  148 (351)
T ss_pred             HHHHHHHHHhcCCcCccHHhhhchhcCchhHhhcCcHHHHHhcCCCchhHHHHHHHHHHHHhcCcchhhcccCCCCCCcC
Confidence            45677889999997 699999874 45 555655333221 1111112345577889999999876521         11


Q ss_pred             ch-----hH---HHHHHHH-HHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCC---C
Q 024452          151 AL-----LW---DRLRKWV-SVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEET---S  218 (267)
Q Consensus       151 ~~-----~~---~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~---~  218 (267)
                      |.     +.   .-..+|+ ..........    -.....+...+.|...+  ...+.|+||+|+|+.|+|+..+.   +
T Consensus       149 p~fDr~am~~E~sLf~dWylpr~~g~~l~~----~~r~~~~aiwd~Lid~~--~~~~~vlvhRDfh~~NLmw~~~~~g~~  222 (351)
T COG3178         149 PPFDRAAMRREASLFVDWYLPRHLGRPLTD----AERQAWEAIWDGLIDSL--LAQPKVLVHRDFHSRNLMWTADRAGAD  222 (351)
T ss_pred             CcccHHHHHHHHHhhHHhhhHHHhCCCCCH----HHHHHHHHHHHHHHHHH--hcCCceeeeccccCccceecCCccCCC
Confidence            11     11   1123444 2111110000    01233444445554433  37889999999999999998642   3


Q ss_pred             CEEEEeecccCcchHhHHHHhhhhhheeeeccCCchhHhHHHHHHh
Q 024452          219 SITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       219 ~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                      ++++|||.+|.+||.+||.||+-.=.+-+.+++.   .-+|+.-||
T Consensus       223 rvGvlDFQDA~iGP~aYDvasL~~DArvt~~pe~---~~~~l~rY~  265 (351)
T COG3178         223 RVGVLDFQDALIGPIAYDVASLLRDARVTWSPER---ELALLDRYW  265 (351)
T ss_pred             CCceeehhhhhcCcchhhHHHHHhhccccCCHHH---HHHHHHHHH
Confidence            7999999999999999999985443343333333   446666665

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.91  E-value=2e-08  Score=85.48  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             CceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-------ccc----c--Ch-HHHHHHHHHHHhCCC-CceEEEEEC--C
Q 024452           45 GAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-------EVF----F--NR-DDEIRTFECMSSQGQ-GPRLLGRFG--D  107 (267)
Q Consensus        45 ~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-------~~~----~--dr-~~E~~~~~~l~~~gl-~P~v~~~~~--~  107 (267)
                      .|-.|++|+|...      +..++||.+..+.       ..+    .  .+ .+|++++..|...|+ +|+++....  .
T Consensus        42 ~~g~gtv~~v~~~------~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         42 AKGRGTTWFVQTP------GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             CCCCccEEEEEeC------CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5668999999863      4789999885421       000    1  11 469999999999997 588887632  1


Q ss_pred             ------eeEEEeecC-CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhh
Q 024452          108 ------GRVEEFIHA-RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT  180 (267)
Q Consensus       108 ------~~v~e~i~G-~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
                            .+|+++++| .++..           +   +..   ...  .  ...      |.                  .
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~-----------~---l~~---~~l--~--~~~------~~------------------~  150 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVA-----------L---LQE---APL--S--EEQ------WQ------------------A  150 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHH-----------H---Hhc---CCC--C--HHH------HH------------------H
Confidence                  178999997 33321           1   110   000  0  010      10                  1


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      +...+..+        +..+++|+|++|+|||++++ +.+.||||+.|....
T Consensus       151 i~~~l~~l--------H~~GI~HrDlkp~NILv~~~-~~v~LIDfg~~~~~~  193 (239)
T PRK01723        151 IGQLIARF--------HDAGVYHADLNAHNILLDPD-GKFWLIDFDRGELRT  193 (239)
T ss_pred             HHHHHHHH--------HHCCCCCCCCCchhEEEcCC-CCEEEEECCCcccCC
Confidence            11122222        23458999999999999874 579999999998754

>TIGR02905 spore_yutH spore coat protein YutH

Probab=98.88  E-value=4.3e-08  Score=86.70  Aligned_cols=193  Identities=11%  Similarity=-0.033  Sum_probs=108.6

Q ss_pred             eeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC--CceEEEEECC-------e---eEEEeecCC
Q 024452           50 EVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ--GPRLLGRFGD-------G---RVEEFIHAR  117 (267)
Q Consensus        50 ~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl--~P~v~~~~~~-------~---~v~e~i~G~  117 (267)
                      .+..|.+      +++.+++|........-  ......++++|+++|+  +|+++....+       |   .+++|.+|+
T Consensus        20 ~~~~~~t------~~g~y~Lk~~e~~~~~~--l~f~~~~~~~L~~~G~~~v~~~i~tk~G~~~~~~~g~~y~L~~w~~~~   91 (313)
T TIGR02905        20 RYEAFRA------NNQAYLIVPVDGLEEEE--LAELMAMSDYLQQAGDETVLELVKTKFGQSSALIDGVSYYLFKAPEFN   91 (313)
T ss_pred             ceeeEEe------CCceEEEEEecCCCHHH--HHHHHHHHHHHHHcCCCcccceeecCCCCEeEEECCEEEEEEeCCCcc
Confidence            4556554      35789999884333211  1367788999999997  4777654321       2   667887665


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCC----Cc---hhHHHHHHHHHHHhhc-------cCccccccc-------
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPR----KA---LLWDRLRKWVSVAKSF-------CSAKDAKEF-------  176 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~----~~---~~~~~l~~~~~~~~~~-------~~~~~~~~~-------  176 (267)
                      ....         ..+|+.||+||........    ..   ...+.+.+..+++...       ....+.+..       
T Consensus        92 ~~~~---------~~~~~~LA~lH~as~~f~~~~~~~~~~~~~~~~~~k~~~el~~~~~~~~~~~~~s~Fd~~fl~~~d~  162 (313)
T TIGR02905        92 ERRG---------VDLGRELATFHKRGRQYPRPIWKKSRIGQWKELWAKRLDQLEDWWQSLLAQGPQTLFDEQFLETFPY  162 (313)
T ss_pred             cchh---------HHHHHHHHHHHHhcCCCCCCccccccccccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHhHH
Confidence            5221         2899999999999764211    01   1112222222222111       110011111       


Q ss_pred             chhhHHHHHHHHHH-hCC---CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhhhhe-eeeccC
Q 024452          177 CLYTLKDEISMLEK-ELP---NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKILLI-LTFSVN  251 (267)
Q Consensus       177 ~~~~l~~~~~~l~~-~l~---~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~~~~-~~~~~~  251 (267)
                      -+...+..++.+.+ .+.   ......++||||+..+|+| .  ++...+|+||++ ++++..|+|-+-.-++ -....+
T Consensus       163 ~~~~a~~ai~~l~~s~y~~~~~~~~~~~lCH~d~~~hn~l-~--~~~~~~i~~d~~-~D~~~~DL~~firk~~~k~~~~~  238 (313)
T TIGR02905       163 YLGLTENAIQYAADTELDDEPGLADSGTICHERFGETTWL-E--RGGLIKPPTEWV-YDHPARDLAEWIRERYMGEIRQN  238 (313)
T ss_pred             HHHHHHHHHHHHHHccchhhhhccccCccccCccCccccc-c--CCCeEecccccc-cccchhHHHHHHHHHHHHhcccc
Confidence            12233334444443 111   1234669999999999988 3  356888999954 8888999777544433 222111


Q ss_pred             CchhHhHHHHHHh
Q 024452          252 SPMVCMRWLRILC  264 (267)
Q Consensus       252 ~~~~~~~~~~~~~  264 (267)
                      - ..++.|+..|.
T Consensus       239 ~-~~~~~~l~~Y~  250 (313)
T TIGR02905       239 Q-RAIASFLQEYE  250 (313)
T ss_pred             H-HHHHHHHHHhh
Confidence            2 26788888775

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YutH, are found only in the family Bacillaceae from among the endospore-forming members of the Firmicutes branch of the Bacteria.

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.86  E-value=4.9e-08  Score=80.30  Aligned_cols=104  Identities=17%  Similarity=0.262  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhCCC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHH
Q 024452           84 DEIRTFECMSSQGQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVS  162 (267)
Q Consensus        84 ~E~~~~~~l~~~gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~  162 (267)
                      +|++.++.+.+.|+ +|+++....+.++||||.|..+....+.+                ...  .  .   +.....  
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~~~~~lvME~Ig~~~~~~~~Lkd----------------~~~--~--~---~~~~~i--  129 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKD----------------AKL--N--D---EEMKNA--  129 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEecCCEEEEEEcCCCCccchhhhc----------------ccc--C--H---HHHHHH--
Confidence            79999999999996 69999987777999999875332211111                000  0  0   011111  


Q ss_pred             HHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHH
Q 024452          163 VAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFK  236 (267)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD  236 (267)
                                        +.+.+..+...+    ....++||||.+.|||+++  +.+.||||.-|-.  ++.+.+
T Consensus       130 ------------------~~~i~~~l~~l~----H~~glVHGDLs~~NIL~~~--~~v~iIDF~qav~~~hp~a~~  181 (197)
T cd05146         130 ------------------YYQVLSMMKQLY----KECNLVHADLSEYNMLWHD--GKVWFIDVSQSVEPTHPHGLE  181 (197)
T ss_pred             ------------------HHHHHHHHHHHH----HhCCeecCCCCHHHEEEEC--CcEEEEECCCceeCCCCCHHH
Confidence                              111222222221    2346999999999999984  5799999998854  444444

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>smart00090 RIO RIO-like kinase

Probab=98.86  E-value=9.9e-08  Score=81.09  Aligned_cols=140  Identities=20%  Similarity=0.275  Sum_probs=86.9

Q ss_pred             EEecCceeeeeEEEE-eCCCCCCCCceEEEEEcCCCcccc-------------------------cChHHHHHHHHHHHh
Q 024452           41 IPLKGAMTNEVYQIA-WPAKNNGLARNVLVRIYGEGVEVF-------------------------FNRDDEIRTFECMSS   94 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~-~~~~~~~~~~~~vlRi~~~~~~~~-------------------------~dr~~E~~~~~~l~~   94 (267)
                      ++|..|....+|++. ...    ++..+++|+........                         ..-+.|++.++.+..
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~----~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       34 GCISTGKEANVYHALDFDG----SGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             CeeccCcceeEEEEEecCC----CCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            467888889999996 222    35789999875432100                         001479999999988


Q ss_pred             CCC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccc
Q 024452           95 QGQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDA  173 (267)
Q Consensus        95 ~gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  173 (267)
                      .++ .|+++......+|+||++|..+....+.+                .    .  ... .....+..           
T Consensus       110 ~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~----------------~----~--~~~-~~~~~i~~-----------  155 (237)
T smart00090      110 AGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKD----------------V----E--PEE-EEEFELYD-----------  155 (237)
T ss_pred             cCCCCCeeeEecCceEEEEEecCCccccccccc----------------C----C--cch-HHHHHHHH-----------
Confidence            776 58888766566999999997765321100                0    0  000 01111111           


Q ss_pred             cccchhhHHHHHHHHHHhCCCCCCcEE-EEccCCCCCCeeeeCCCCCEEEEeecccCc-chHh
Q 024452          174 KEFCLYTLKDEISMLEKELPNDHQEIG-FCHNDLQYGNIMIDEETSSITIIVSFTFLQ-NMLN  234 (267)
Q Consensus       174 ~~~~~~~l~~~~~~l~~~l~~~~~~~~-l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~-~~~~  234 (267)
                            .+...+..+        .... ++|+|++|+||+++  ++.+.+|||..|.. +.+.
T Consensus       156 ------qi~~~l~~L--------H~~g~iiH~Dikp~NIli~--~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      156 ------DILEEMRKL--------YKEGELVHGDLSEYNILVH--DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             ------HHHHHHHHH--------HhcCCEEeCCCChhhEEEE--CCCEEEEEChhhhccCCcc
Confidence                  112222222        2233 89999999999998  35799999999984 4444

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.85  E-value=2.1e-08  Score=82.34  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---------------------------hHHHHHHHHHHHh
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---------------------------RDDEIRTFECMSS   94 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---------------------------r~~E~~~~~~l~~   94 (267)
                      .|..|-...||+....     ++..+++|+..++.....+                           ...|++.+..+..
T Consensus         4 ~ig~G~~~~Vy~a~~~-----~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   78 (190)
T cd05147           4 CISTGKEANVYHATTA-----NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVT   78 (190)
T ss_pred             ccccccceEEEEEECC-----CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4677878999999753     3589999988654211111                           0248899999988


Q ss_pred             CCC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccc
Q 024452           95 QGQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDA  173 (267)
Q Consensus        95 ~gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  173 (267)
                      .|+ .|.++......+||||++|..+....+                ....      .+ .+.+..+..           
T Consensus        79 ~~v~~p~~~~~~~~~iVmE~i~g~~l~~~~~----------------~~~~------~~-~~~~~~i~~-----------  124 (190)
T cd05147          79 AGIPCPEPILLKSHVLVMEFIGDDGWAAPRL----------------KDAP------LS-ESKARELYL-----------  124 (190)
T ss_pred             CCCCCCcEEEecCCEEEEEEeCCCCCcchhh----------------hcCC------CC-HHHHHHHHH-----------
Confidence            885 577665554569999999954331100                0000      01 011111111           


Q ss_pred             cccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          174 KEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       174 ~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .+...+..+-       ....++|+|++|+|||+++  +.+.||||..|.
T Consensus       125 ------qi~~~L~~l~-------H~~giiHrDlkP~NIli~~--~~v~LiDFG~a~  165 (190)
T cd05147         125 ------QVIQIMRILY-------QDCRLVHADLSEYNLLYHD--GKLYIIDVSQSV  165 (190)
T ss_pred             ------HHHHHHHHHH-------HhCCcccCCCCHHHEEEEC--CcEEEEEccccc
Confidence                  1112222221       1235999999999999984  579999999987

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.85  E-value=4.2e-08  Score=80.44  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc---------------------------ChHHHHHHHHHHH
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF---------------------------NRDDEIRTFECMS   93 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~---------------------------dr~~E~~~~~~l~   93 (267)
                      .+|..|-...||++...     ++..+++|+..++.....                           ....|+..+..+.
T Consensus         3 ~~ig~G~~~~Vy~a~~~-----~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   77 (190)
T cd05145           3 GCISTGKEANVYHARTG-----DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLY   77 (190)
T ss_pred             ceeecCCCcEEEEEEcC-----CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35778888999999753     358999999876521100                           0136788888888


Q ss_pred             hCCC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccc
Q 024452           94 SQGQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKD  172 (267)
Q Consensus        94 ~~gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  172 (267)
                      ..|+ .|.++......++|||++|..+....         +    ..   ...      + .+....+..          
T Consensus        78 ~~~i~~p~~~~~~~~~lVmE~~~g~~~~~~~---------l----~~---~~~------~-~~~~~~i~~----------  124 (190)
T cd05145          78 EAGVPVPEPILLKKNVLVMEFIGDDGSPAPR---------L----KD---VPL------E-EEEAEELYE----------  124 (190)
T ss_pred             hCCCCCceEEEecCCEEEEEEecCCCchhhh---------h----hh---ccC------C-HHHHHHHHH----------
Confidence            8886 58888766556999999997432110         0    00   000      0 011111111          


Q ss_pred             ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHH
Q 024452          173 AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFK  236 (267)
Q Consensus       173 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD  236 (267)
                             .+...+..+-       ....++|+|++|+|||++  ++.+.||||..|..  ++.+|+
T Consensus       125 -------~l~~~l~~lH-------~~~givHrDlkP~NIll~--~~~~~liDFG~a~~~~~~~~~~  174 (190)
T cd05145         125 -------QVVEQMRRLY-------QEAGLVHGDLSEYNILYH--DGKPYIIDVSQAVELDHPNALE  174 (190)
T ss_pred             -------HHHHHHHHHH-------HhCCEecCCCChhhEEEE--CCCEEEEEcccceecCCCCHHH
Confidence                   1112222221       114699999999999998  36899999999976  555554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.85  E-value=1.8e-08  Score=95.54  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=84.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---ccc-----ccCh-HHHHHHHHHHHhCCCC-ceEEEEECC--
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEV-----FFNR-DDEIRTFECMSSQGQG-PRLLGRFGD--  107 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~-----~~dr-~~E~~~~~~l~~~gl~-P~v~~~~~~--  107 (267)
                      ...|..|-...||+.....      ..+++|.....   .+.     ...+ .+|+++++.+...++. |.++...++  
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~------~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLG------RDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             cceeccCCcEEEEEEeecC------ccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            3556788889999987532      33333322111   000     0111 4789999999888864 666666543  


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                      .+++||++|.++...-.....++.++++.|+.+|                                              
T Consensus       412 ~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH----------------------------------------------  445 (535)
T PRK09605        412 TIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLH----------------------------------------------  445 (535)
T ss_pred             EEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence            3899999998764310000111222222222222                                              


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                                ...++|+|++|+|||++  ++.+.||||+.|......+|.|..
T Consensus       446 ----------~~giiHrDlkp~NILl~--~~~~~liDFGla~~~~~~~d~a~~  486 (535)
T PRK09605        446 ----------KAGIVHGDLTTSNFIVR--DDRLYLIDFGLGKYSDLIEDKAVD  486 (535)
T ss_pred             ----------hCCCccCCCChHHEEEE--CCcEEEEeCcccccCCchHhhhhh
Confidence                      12489999999999995  357999999999999988886663

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=98.82  E-value=8.4e-09  Score=85.11  Aligned_cols=66  Identities=15%  Similarity=0.000  Sum_probs=47.5

Q ss_pred             CcEEEEccCCCCCCeeeeCCCC----CEEEEeecccCcchHhHHHHhhhhhheeeecc-CCchhHhHHHHHHhh
Q 024452          197 QEIGFCHNDLQYGNIMIDEETS----SITIIVSFTFLQNMLNFKRACTKILLILTFSV-NSPMVCMRWLRILCL  265 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~----~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~  265 (267)
                      ...++||||++++|+|++.++.    .+.+|||+.|++|++++|++.+=+.   ..+. ........+++.|.-
T Consensus       118 ~~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~~Dl~~~l~~---~~~~~~r~~~~~~ll~~Y~~  188 (196)
T smart00587      118 EFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAEDLHYFLLT---SLSVEIRREHFDELLKFYYE  188 (196)
T ss_pred             CceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHH
Confidence            5689999999999999985322    5899999999999999998874332   1121 122335567777653

subfamily of choline kinases

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.78  E-value=1.1e-07  Score=77.35  Aligned_cols=133  Identities=23%  Similarity=0.318  Sum_probs=81.1

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-------------------------hHHHHHHHHHHHhCC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-------------------------RDDEIRTFECMSSQG   96 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-------------------------r~~E~~~~~~l~~~g   96 (267)
                      +|..|-...+|++...     ++..+++|++.+......+                         ...|...+..+...|
T Consensus         4 ~lg~G~~g~Vy~a~~~-----~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~   78 (187)
T cd05119           4 PIGTGKEADVYLALDG-----DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAG   78 (187)
T ss_pred             ccccccceeEEEEECC-----CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcC
Confidence            4677888999999743     2578999987653211100                         035677777777777


Q ss_pred             C-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccc
Q 024452           97 Q-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKE  175 (267)
Q Consensus        97 l-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  175 (267)
                      + +|+++......++++|++|.......+.+             ...         .  +......              
T Consensus        79 ~~~~~~~~~~~~~lv~e~~~g~~~~~~~l~~-------------~~~---------~--~~~~~~~--------------  120 (187)
T cd05119          79 VPVPKPIDLNRHVLVMEFIGGDGIPAPRLKD-------------VRL---------L--EDPEELY--------------  120 (187)
T ss_pred             CCCCceEecCCCEEEEEEeCCCCccChhhhh-------------hhh---------c--ccHHHHH--------------
Confidence            4 78888877667999999996643211100             000         0  0011111              


Q ss_pred             cchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          176 FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       176 ~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .+.+..+...    .....++|+|++|+||+++  ++.+.+|||+.|.
T Consensus       121 ------~~~~~~l~~l----h~~~~ivH~Dl~p~Nili~--~~~~~liDfg~a~  162 (187)
T cd05119         121 ------DQILELMRKL----YREAGLVHGDLSEYNILVD--DGKVYIIDVPQAV  162 (187)
T ss_pred             ------HHHHHHHHHH----hhccCcCcCCCChhhEEEE--CCcEEEEECcccc
Confidence                  1111222211    1124689999999999999  3689999999885

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.77  E-value=5.7e-08  Score=82.64  Aligned_cols=130  Identities=22%  Similarity=0.274  Sum_probs=89.4

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--------------------cCh---HHHHHHHHHHHhCCC-
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--------------------FNR---DDEIRTFECMSSQGQ-   97 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--------------------~dr---~~E~~~~~~l~~~gl-   97 (267)
                      +|.-|=...+|.+..+     .+..+++|++.-+...+                    +.|   ++|+++|..|...|. 
T Consensus        98 ~IGvGKEsdVY~~~~~-----~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          98 KIGVGKESDVYVAIDP-----KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             ccccCccceEEEEECC-----CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            4555667888988754     36899999886543111                    122   579999999999975 


Q ss_pred             CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccc
Q 024452           98 GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFC  177 (267)
Q Consensus        98 ~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  177 (267)
                      .|+++.......||++|+|..+..-.+ +                     .  .++-+                      
T Consensus       173 VP~P~~~nRHaVvMe~ieG~eL~~~r~-~---------------------~--en~~~----------------------  206 (304)
T COG0478         173 VPKPIAWNRHAVVMEYIEGVELYRLRL-D---------------------V--ENPDE----------------------  206 (304)
T ss_pred             CCCccccccceeeeehcccceeecccC-c---------------------c--cCHHH----------------------
Confidence            799999998999999999977764221 1                     0  01000                      


Q ss_pred             hhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          178 LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       178 ~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        .+...++.++..+     ..+++||||..-|||++++ +.+.+|||-=|-.
T Consensus       207 --il~~il~~~~~~~-----~~GiVHGDlSefNIlV~~d-g~~~vIDwPQ~v~  251 (304)
T COG0478         207 --ILDKILEEVRKAY-----RRGIVHGDLSEFNILVTED-GDIVVIDWPQAVP  251 (304)
T ss_pred             --HHHHHHHHHHHHH-----HcCccccCCchheEEEecC-CCEEEEeCccccc
Confidence              1112223333321     3569999999999999985 6899999987754

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.77  E-value=8.9e-08  Score=78.32  Aligned_cols=110  Identities=21%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhCCC-CceEEEEECCeeEEEeec--CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHH
Q 024452           83 DDEIRTFECMSSQGQ-GPRLLGRFGDGRVEEFIH--ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRK  159 (267)
Q Consensus        83 ~~E~~~~~~l~~~gl-~P~v~~~~~~~~v~e~i~--G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~  159 (267)
                      ++|+++|..+.+.|+ +|+++.+.++-+|||||+  |.++..-.  +                .... .  ..    .. 
T Consensus        56 ~~E~~~L~~l~~~Gv~vP~p~~~~~~~ivME~I~~~G~~~~~l~--~----------------~~~~-~--~~----~~-  109 (188)
T PF01163_consen   56 KKEFRNLKRLYEAGVPVPKPYDYNRNVIVMEYIGEDGVPLPRLK--D----------------VDLS-P--EE----PK-  109 (188)
T ss_dssp             HHHHHHHHHCCCTT-SS--EEEEETTEEEEE--EETTEEGGCHH--H----------------CGGG-G--ST----HH-
T ss_pred             HHHHHHHHHHHHCCccCCcEEEEeCCEEEEEecCCCccchhhHH--h----------------cccc-c--hh----HH-
Confidence            469999999999996 899999988889999999  76554210  0                0000 0  00    00 


Q ss_pred             HHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHHH
Q 024452          160 WVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFKR  237 (267)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD~  237 (267)
                                         ..+.+.++.+...+    ....++|||+.+.|||+++  +++.+|||+-|..  ++.+.+.
T Consensus       110 -------------------~~~~~il~~~~~~~----~~~givHGDLs~~NIlv~~--~~~~iIDf~qav~~~~p~a~~~  164 (188)
T PF01163_consen  110 -------------------ELLEEILEEIIKML----HKAGIVHGDLSEYNILVDD--GKVYIIDFGQAVDSSHPNAEEL  164 (188)
T ss_dssp             -------------------HHHHHHHHHHHHHH----HCTTEEESS-STTSEEEET--TCEEE--GTTEEETTSTTHHHH
T ss_pred             -------------------HHHHHHHHHHHHHH----HhcCceecCCChhhEEeec--ceEEEEecCcceecCCccHHHH
Confidence                               01111222222222    1235999999999999996  3899999998754  5666665


Q ss_pred             Hhhhhh
Q 024452          238 ACTKIL  243 (267)
Q Consensus       238 A~~~~~  243 (267)
                      .--|+.
T Consensus       165 l~RDi~  170 (188)
T PF01163_consen  165 LRRDIE  170 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.72  E-value=3.2e-07  Score=75.52  Aligned_cols=129  Identities=20%  Similarity=0.229  Sum_probs=81.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-----------------------cChHHHHHHHHHHHhCC-
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-----------------------FNRDDEIRTFECMSSQG-   96 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-----------------------~dr~~E~~~~~~l~~~g-   96 (267)
                      .+|..|-...+|++...     ++..+.+|+...+...+                       .....|+.++..+...+ 
T Consensus        21 ~~i~~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          21 NQIGVGKESDVYLALDP-----DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             CccccCcceEEEEEEcC-----CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            55788888999999753     25789998754322000                       01246788888887776 


Q ss_pred             CCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccccccc
Q 024452           97 QGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEF  176 (267)
Q Consensus        97 l~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  176 (267)
                      ..|+++......++++|++|.++....                  ..       ..    ...+..+             
T Consensus        96 ~v~~~~~~~~~~lv~e~~~g~~L~~~~------------------~~-------~~----~~~~~~~-------------  133 (198)
T cd05144          96 PVPKPIDWNRHAVVMEYIDGVELYRVR------------------VL-------ED----PEEVLDE-------------  133 (198)
T ss_pred             CCCceeecCCceEEEEEeCCcchhhcc------------------cc-------cc----HHHHHHH-------------
Confidence            468888765566999999997654210                  00       00    0011111             


Q ss_pred             chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          177 CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       177 ~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          +...+..+-        ...++|+|++|+||++++ ++.+.||||..|.
T Consensus       134 ----i~~~l~~lh--------~~gi~H~Dl~p~Nill~~-~~~~~liDfg~~~  173 (198)
T cd05144         134 ----ILEEIVKAY--------KHGIIHGDLSEFNILVDD-DEKIYIIDWPQMV  173 (198)
T ss_pred             ----HHHHHHHHH--------HCCCCcCCCCcccEEEcC-CCcEEEEECCccc
Confidence                111111121        145999999999999987 4689999999984

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.68  E-value=1.3e-07  Score=87.37  Aligned_cols=164  Identities=17%  Similarity=0.217  Sum_probs=97.6

Q ss_pred             cCCCChHHHHHHHHHhCC-CCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--------
Q 024452            9 LPSSSPEELKKVLQSVAS-DWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--------   79 (267)
Q Consensus         9 ~~~~~~~~~~~l~~~~~p-~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--------   79 (267)
                      .|..+.+.+++.+.+-+. .+..+.   ..++-.|+..|-..+||+.++.+     +..++||+..++....        
T Consensus        93 v~p~~~~~~~~~l~~elg~~~~~~F---~~fd~~plasaSigQVh~A~l~~-----G~~VaVKv~rp~i~~~i~~Dl~~l  164 (437)
T TIGR01982        93 VPPFDFKVARKVIEAALGGPLEELF---AEFEEKPLAAASIAQVHRARLVD-----GKEVAVKVLRPGIEKTIAADIALL  164 (437)
T ss_pred             CCCCCHHHHHHHHHHHhCcCHHHHH---hhCCCcceeeeehhheEEEEecC-----CCEEEEEeeCCCcHHHHHHHHHHH
Confidence            455666778888877664 233222   22344689888899999998752     5899999987763111        


Q ss_pred             ---------------------------------cChHHHHHHHHHHHhC-----CC-CceEEEEEC--CeeEEEeecCCC
Q 024452           80 ---------------------------------FNRDDEIRTFECMSSQ-----GQ-GPRLLGRFG--DGRVEEFIHART  118 (267)
Q Consensus        80 ---------------------------------~dr~~E~~~~~~l~~~-----gl-~P~v~~~~~--~~~v~e~i~G~~  118 (267)
                                                       +|..+|++.+..+++.     ++ .|+++....  ..++|||++|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~  244 (437)
T TIGR01982       165 YRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIP  244 (437)
T ss_pred             HHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcc
Confidence                                             1223455555555542     32 588876433  238999999988


Q ss_pred             CCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCc
Q 024452          119 LSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQE  198 (267)
Q Consensus       119 l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~  198 (267)
                      +...       . ..       .....    ..   ..+...   .                ....+..+        ..
T Consensus       245 L~~~-------~-~~-------~~~~~----~~---~~ia~~---~----------------~~~~l~ql--------~~  275 (437)
T TIGR01982       245 LSDI-------A-AL-------DEAGL----DR---KALAEN---L----------------ARSFLNQV--------LR  275 (437)
T ss_pred             cccH-------H-HH-------HhcCC----CH---HHHHHH---H----------------HHHHHHHH--------Hh
Confidence            8641       0 00       00000    00   001000   0                00001111        12


Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .+++|+|+||+||+++++ +.+.+|||..++.
T Consensus       276 ~g~~H~D~hPgNilv~~~-g~i~liDfG~~~~  306 (437)
T TIGR01982       276 DGFFHADLHPGNIFVLKD-GKIIALDFGIVGR  306 (437)
T ss_pred             CCceeCCCCcccEEECCC-CcEEEEeCCCeeE
Confidence            458999999999999874 6899999999875

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=98.67  E-value=2.5e-07  Score=76.15  Aligned_cols=164  Identities=17%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             CCceEEEEEcCCCcccccChHHHHHHHHHHHhCC--CCceEEEEEC--Ce---eEEEeecCCCCCcccCCChHHHHHHHH
Q 024452           63 LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQG--QGPRLLGRFG--DG---RVEEFIHARTLSAADIRDPKISELVAA  135 (267)
Q Consensus        63 ~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~g--l~P~v~~~~~--~~---~v~e~i~G~~l~~~~l~~~~i~~~la~  135 (267)
                      +.++++||++......++  +-|.+.++.+.+.+  ++|+++...+  +|   +|||+|+=+.+..       -+..+|+
T Consensus        34 DaG~~FvK~nr~~~~~mf--eGE~~sLeAi~sT~tv~vprpikvid~p~Ggs~lime~idf~~lr~-------~~a~lG~  104 (313)
T KOG3021|consen   34 DAGKVFVKVNRSIARDMF--EGELASLEAIQSTETVLVPRPIKVIDLPGGGSSLIMEHIDFQGLRS-------DAAKLGS  104 (313)
T ss_pred             CCccEEEEeccccchHHH--hhHHHHHHHHHhcCceecCCceeeEecCCCceeeeeehhhcccchh-------HHHHHHH
Confidence            568999999765433333  37889999998876  4799887753  33   8999998554543       3678999


Q ss_pred             HHHhhccCC-------------CC---------C----C--------CCc---hhHHHHHHHHHHHhhccCccc--cccc
Q 024452          136 KMREFHDLK-------------MP---------G----P--------RKA---LLWDRLRKWVSVAKSFCSAKD--AKEF  176 (267)
Q Consensus       136 ~La~lH~~~-------------~~---------~----~--------~~~---~~~~~l~~~~~~~~~~~~~~~--~~~~  176 (267)
                      .||.||...             +.         +    .        ..|   +.-++|..|+... ++....+  .+..
T Consensus       105 qlAdmHl~n~kl~e~r~~~~~tv~rgge~~e~~~v~~FGF~v~tccG~lpQvNdW~edW~eFf~rh-Rlq~Qldl~~~~~  183 (313)
T KOG3021|consen  105 QLADMHLKNEKLAEARRTEAGTVGRGGEEGEQIGVENFGFHVVTCCGRLPQVNDWQEDWEEFFARH-RLQPQLDLLEKTY  183 (313)
T ss_pred             HHHHHhhhhHHHHHHHHHhccccccCcccccccchhccceeeeeecccCcccccchhhHHHHHHHH-hhhHHHHHHHHhh
Confidence            999999221             10         0    0        001   1123344443321 1211110  0111


Q ss_pred             -chhhHHHHHHHHH----HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          177 -CLYTLKDEISMLE----KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       177 -~~~~l~~~~~~l~----~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                       + ..+.+....|.    ..+....--+++.|||+|.||+-.|.. +..+|.|-- +.||..+|+.+.
T Consensus       184 ~D-re~~el~~~L~~kia~Lf~~~eI~PaLlHGDLW~GNva~D~~-~ePiIfDPa-sfYgh~Efefgi  248 (313)
T KOG3021|consen  184 GD-REAFELWSILQTKIADLFKCLEILPALLHGDLWSGNVAEDGA-GEPIIFDPA-SFYGHSEFEFGI  248 (313)
T ss_pred             cc-HHHHHHHHHHHHhhHHHhccceeehhhhccccccCcccccCC-CCceEeCch-hhcCCcHHHHHH
Confidence             1 11222222222    222233456789999999999887753 568888876 668999999654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.65  E-value=2.5e-07  Score=83.27  Aligned_cols=133  Identities=20%  Similarity=0.214  Sum_probs=83.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----cc-ccChHHHHHHHHHHHhCCCCceEEEEECCeeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e  112 (267)
                      -...|..|....||++.....   .+..+.+|......     .. ...-.+|+++++.+...++.|.++......+++|
T Consensus        22 ~~~~IG~G~fg~Vy~a~~~~~---~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~LVmE   98 (365)
T PRK09188         22 ETAVLKRDVFSTVERGYFAGD---PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGLVRG   98 (365)
T ss_pred             EccEEeecCcEEEEEEEEcCC---CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEEEEE
Confidence            345567888899999975321   13445677643221     10 1112589999999998888888887654559999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..        .          +    +..   .     ..|..+                 +.+.+..+    
T Consensus        99 ~~~G~~L~~--------~----------~----~~~---~-----~~~~~~-----------------i~~aL~~l----  127 (365)
T PRK09188         99 WTEGVPLHL--------A----------R----PHG---D-----PAWFRS-----------------AHRALRDL----  127 (365)
T ss_pred             ccCCCCHHH--------h----------C----ccc---h-----HHHHHH-----------------HHHHHHHH----
Confidence            999966531        0          0    000   0     112211                 11222222    


Q ss_pred             CCCCCcEEEEccCC-CCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDL-QYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl-~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                          +...++|+|+ +|.|||++.+ +.+.|+||..|..
T Consensus       128 ----H~~gIiHrDL~KP~NILv~~~-~~ikLiDFGlA~~  161 (365)
T PRK09188        128 ----HRAGITHNDLAKPQNWLMGPD-GEAAVIDFQLASV  161 (365)
T ss_pred             ----HHCCCeeCCCCCcceEEEcCC-CCEEEEECcccee
Confidence                2236899999 8999999763 6799999999874

>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase

Probab=98.56  E-value=3.2e-07  Score=85.91  Aligned_cols=176  Identities=16%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC--CceEEEEE----CCe---
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ--GPRLLGRF----GDG---  108 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl--~P~v~~~~----~~~---  108 (267)
                      ..+..+++..+|++..+         +.++++|+|..-. .-+|  =|+++.++|.+.|+  .|.+++..    ++|   
T Consensus       168 ~~~r~l~~EQSNtSi~~---------g~~~ilKlyRrl~-~G~n--Pe~E~~r~Lte~gf~~vP~llG~v~~~~~~g~~~  235 (528)
T TIGR02457       168 PEVRLLSAEQSNSSLVV---------GDRVVLKLYRKVE-PGIN--PEIEMGRYLTAAGYANIPPLLGSVERVGGDQAPH  235 (528)
T ss_pred             CceeecCCCcCceEEEE---------CCEEEEEEecccC-CCCC--cchHHHHHHHhCCCccCCcccEEEEEEcCCCCEE
Confidence            35677788889988888         3789999997532 1233  47788888988886  48777653    222   


Q ss_pred             ---eEEEeecCCC------CCc-----cc---------------CCC-hHHHHHHHHHHHhhccCCCC------CCCCch
Q 024452          109 ---RVEEFIHART------LSA-----AD---------------IRD-PKISELVAAKMREFHDLKMP------GPRKAL  152 (267)
Q Consensus       109 ---~v~e~i~G~~------l~~-----~~---------------l~~-~~i~~~la~~La~lH~~~~~------~~~~~~  152 (267)
                         ++++||++..      ++.     +.               +.. .+.++.||+..|.||..-..      +.+++-
T Consensus       236 tla~lq~fV~nqgDaW~~tl~~l~r~~e~~~~~~~~~~~~~~~~~~~~~~~a~~LG~rtAemH~aLA~~~~~~aF~pep~  315 (528)
T TIGR02457       236 TLGLLQGYVQNQGDAWRWTLGHLKRYIEEQLSPCANGALAPTLIGAGYLEFAGLLGRRLAELHLALAAGGEDPAFAPEPI  315 (528)
T ss_pred             eeehHhhhhCCCccHHHHHHHHHHHHHHhhhccccccccChhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence               6688987642      100     00               000 23478899999999986431      112221


Q ss_pred             hHHHHHHHHHHHh-------h-ccCcc----cccccchhhHHHHHHHHHHhCCC-----CCCcEEEEccCCCCCCeeeeC
Q 024452          153 LWDRLRKWVSVAK-------S-FCSAK----DAKEFCLYTLKDEISMLEKELPN-----DHQEIGFCHNDLQYGNIMIDE  215 (267)
Q Consensus       153 ~~~~l~~~~~~~~-------~-~~~~~----~~~~~~~~~l~~~~~~l~~~l~~-----~~~~~~l~H~Dl~~~Nilv~~  215 (267)
                      -....+.|+..+.       . +....    +...-..+.+...-+.+...+..     ......=||||+|.||+|+.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~a~~~L~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~k~RiHGD~HLgqvL~t~  395 (528)
T TIGR02457       316 STLYQRSWYQDMRAQAERALQLLAQSRDGLPAAARALADRLLAQRKELAAHLRPLVKREIDGLKIRIHGDFHLGQVLVVQ  395 (528)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEeEecCcchhcEEEeC
Confidence            1122233332221       1 10000    00000112222222233222211     122233499999999999986


Q ss_pred             CCCCEEEEeecc
Q 024452          216 ETSSITIIVSFT  227 (267)
Q Consensus       216 ~~~~v~lIDwE~  227 (267)
                      +  ...|||||-
T Consensus       396 ~--d~~IiDFEG  405 (528)
T TIGR02457       396 D--DAVLIDFEG  405 (528)
T ss_pred             C--CeEEEcCCC
Confidence            3  467999995

Three pathways for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium may favor trehalose, physiological concentrations of trehalose may be much greater than that of maltose and TreS may act largely in its degradation. This model describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.54  E-value=3.4e-06  Score=70.28  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-------ccC---hHH
Q 024452           15 EELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-------FFN---RDD   84 (267)
Q Consensus        15 ~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-------~~d---r~~   84 (267)
                      ++-.++...++..        +--.+..+.+.--|.|.++..      ++++|++|.+.+....       ++-   ..+
T Consensus        19 ~~y~~l~~~i~~~--------~~~~~kv~k~~~r~~ValIei------~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~   84 (229)
T PF06176_consen   19 EKYLELGEKILDN--------NYKIIKVFKNTKRNYVALIEI------DGKKYILKEPREENRRPERRFKSFFKGSEYSR   84 (229)
T ss_pred             hHHHHHHHHHHhC--------CceEEEeecCCCccEEEEEEE------CCcEEEEeccchhhhhHHHHHHHHhccHHHHH
Confidence            3445555555432        222344555555667777765      3689999998765311       110   123


Q ss_pred             HHHHHHHHHhCCCC-c-eEEEEEC--------Ce-eEEEeecCCCCCcc-cCCChHHHHHHHHHHHhhccCCCCCCCCch
Q 024452           85 EIRTFECMSSQGQG-P-RLLGRFG--------DG-RVEEFIHARTLSAA-DIRDPKISELVAAKMREFHDLKMPGPRKAL  152 (267)
Q Consensus        85 E~~~~~~l~~~gl~-P-~v~~~~~--------~~-~v~e~i~G~~l~~~-~l~~~~i~~~la~~La~lH~~~~~~~~~~~  152 (267)
                      ++.....+.+.|+. | .++....        .. +++|||||..++.. ++.                         ..
T Consensus        85 l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~-------------------------e~  139 (229)
T PF06176_consen   85 LINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIEDID-------------------------ED  139 (229)
T ss_pred             HHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEecCeecccchhcC-------------------------HH
Confidence            44455666677863 3 2222221        11 78999999988642 110                         00


Q ss_pred             hHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          153 LWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..                        +.+.+.+.++        +..++.|||+||||+++.+  +++.+||+.....
T Consensus       140 ~~------------------------~ki~~~ikql--------H~~G~~HGD~hpgNFlv~~--~~i~iID~~~k~~  183 (229)
T PF06176_consen  140 LA------------------------EKIVEAIKQL--------HKHGFYHGDPHPGNFLVSN--NGIRIIDTQGKRM  183 (229)
T ss_pred             HH------------------------HHHHHHHHHH--------HHcCCccCCCCcCcEEEEC--CcEEEEECccccc
Confidence            00                        1122222222        2246899999999999995  4699999987754

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.54  E-value=7.4e-07  Score=73.93  Aligned_cols=130  Identities=18%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC--h-HHHHHHHHHHHhCCCCceEEEEECCeeEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN--R-DDEIRTFECMSSQGQGPRLLGRFGDGRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d--r-~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~  113 (267)
                      ....+..|.=.++|.+..      .+.+++.|-.....-  ..+.  + .+|+++++.|....-.|+++.......+++|
T Consensus         6 ~~~~l~~~~f~~v~~~~~------~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmey   79 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG------GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSY   79 (218)
T ss_pred             cceeecCCCcceEEEeec------CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEee
Confidence            345566666688997753      246776665433321  1111  1 4799999999877667999887555589999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      |+|.++...                      .+..   .    . .+..+                 +...++.+     
T Consensus        80 I~G~~L~~~----------------------~~~~---~----~-~~~~q-----------------i~~~L~~l-----  107 (218)
T PRK12274         80 LAGAAMYQR----------------------PPRG---D----L-AYFRA-----------------ARRLLQQL-----  107 (218)
T ss_pred             ecCccHHhh----------------------hhhh---h----H-HHHHH-----------------HHHHHHHH-----
Confidence            998765310                      0000   0    0 01111                 11112222     


Q ss_pred             CCCCcEEEEccCC-CCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDL-QYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl-~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         +..+++|+|+ +|+|||++++ +.+.||||..|..
T Consensus       108 ---H~~GIvHrDL~kp~NILv~~~-g~i~LIDFG~A~~  141 (218)
T PRK12274        108 ---HRCGVAHNDLAKEANWLVQED-GSPAVIDFQLAVR  141 (218)
T ss_pred             ---HHCcCccCCCCCcceEEEcCC-CCEEEEECCCcee
Confidence               2346999999 6999999864 6799999999975

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.54  E-value=5e-07  Score=75.09  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=40.1

Q ss_pred             CcEEEEccCCCCCCeeeeCCC--CCEEEEeecccCcchHhHHHHhhhhhheeeeccCCchhHhHHHH
Q 024452          197 QEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFLQNMLNFKRACTKILLILTFSVNSPMVCMRWLR  261 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~~~~~~fD~A~~~~~~~~~~~~~~~~~~~~~~~  261 (267)
                      +..+++|+|++++|||+++++  ..+.+||||.+..........+-|+.-+.............|.+
T Consensus       135 H~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~~~~~~~~~dL~~L~rs~~~~~~~~~d~~~  201 (206)
T PF06293_consen  135 HDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRPSSRRWRAKDLARLLRSLLRSGWSERDRQR  201 (206)
T ss_pred             HHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCCCChHHHHHhHHHHHHhccccCCCHHHHHH
Confidence            445699999999999999752  15899999999886633333333433333322233333444444

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.54  E-value=1.9e-07  Score=87.27  Aligned_cols=164  Identities=15%  Similarity=0.207  Sum_probs=103.8

Q ss_pred             cCCCChHHHHHHHHHhCC-CCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-------
Q 024452            9 LPSSSPEELKKVLQSVAS-DWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-------   80 (267)
Q Consensus         9 ~~~~~~~~~~~l~~~~~p-~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-------   80 (267)
                      .|+.+-+.+.+++.+.+. .|..+.   +.++-.|+.++--.+||+..+.+     ++.++||+..++....+       
T Consensus       101 vpp~~~~~~~~iie~eLG~~iee~F---~eF~~~PiAsASIaQVH~A~L~s-----G~~VAVKVqrPgi~~~i~~DL~il  172 (517)
T COG0661         101 VPPFPFEEAERIIEEELGRPIEELF---SEFEPEPIASASIAQVHRAVLKS-----GEEVAVKVQRPGIRERIEADLKLL  172 (517)
T ss_pred             CCCCCHHHHHHHHHHHhCCCHHHHH---HHcCCCchhhhhHhhheeEEecC-----CCEEEEEecCCChHHHHHHHHHHH
Confidence            577777888888888875 455433   23455788777788999998863     58999999988742211       


Q ss_pred             ----------------------------------ChHHHHHHHHHHHhC-----C-CCceEEEEECCe--eEEEeecCCC
Q 024452           81 ----------------------------------NRDDEIRTFECMSSQ-----G-QGPRLLGRFGDG--RVEEFIHART  118 (267)
Q Consensus        81 ----------------------------------dr~~E~~~~~~l~~~-----g-l~P~v~~~~~~~--~v~e~i~G~~  118 (267)
                                                        |..+|+..+..++++     . ..|+||+-..+.  ++||||+|-.
T Consensus       173 ~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~  252 (517)
T COG0661         173 RRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIK  252 (517)
T ss_pred             HHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEe
Confidence                                              233466666666653     2 268888754333  7899999988


Q ss_pred             CCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCc
Q 024452          119 LSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQE  198 (267)
Q Consensus       119 l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~  198 (267)
                      ++.-..     .          .+..      .+. +.+..-                   -....++++        ..
T Consensus       253 i~d~~~-----l----------~~~g------~d~-k~ia~~-------------------~~~~f~~q~--------~~  283 (517)
T COG0661         253 ISDIAA-----L----------KSAG------IDR-KELAEL-------------------LVRAFLRQL--------LR  283 (517)
T ss_pred             cccHHH-----H----------HhcC------CCH-HHHHHH-------------------HHHHHHHHH--------Hh
Confidence            875210     0          0000      010 001000                   001111111        22


Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .+|.|+|+|||||+++.+ +.+.++||...+.
T Consensus       284 dgffHaDpHpGNi~v~~~-g~i~~lDfGi~g~  314 (517)
T COG0661         284 DGFFHADPHPGNILVRSD-GRIVLLDFGIVGR  314 (517)
T ss_pred             cCccccCCCccceEEecC-CcEEEEcCcceec
Confidence            459999999999999985 7899999998876

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.53  E-value=3.5e-07  Score=86.05  Aligned_cols=105  Identities=13%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             cCCCChHHHHHHHHHhCC-CCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--------
Q 024452            9 LPSSSPEELKKVLQSVAS-DWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--------   79 (267)
Q Consensus         9 ~~~~~~~~~~~l~~~~~p-~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--------   79 (267)
                      .|..+.+.+++.+.+-+. .|..+.   +.++..|+..|-..+||+....+    ++..++||+-.++....        
T Consensus        95 vpp~~~~~~~~~ie~elG~~~~~~F---~~fd~~PlasaSiaQVh~A~l~~----~G~~VAVKV~rP~i~~~I~~Dl~~l  167 (537)
T PRK04750         95 VPPFDGALARAIIEKALGGPVEEWF---DDFDIKPLASASIAQVHFARLKD----NGREVVVKVLRPDILPVIDADLALM  167 (537)
T ss_pred             CCCCCHHHHHHHHHHHhCCCHHHHH---HhcChhhhcCCCccEEEEEEECC----CCCEEEEEEeCcchHHHHHHHHHHH
Confidence            466677888888887763 344332   23556899999999999998753    25899999987663110        


Q ss_pred             ---------------------------------cChHHHHHHHHHHHhC-----C-CCceEEEEEC--CeeEEEeecCCC
Q 024452           80 ---------------------------------FNRDDEIRTFECMSSQ-----G-QGPRLLGRFG--DGRVEEFIHART  118 (267)
Q Consensus        80 ---------------------------------~dr~~E~~~~~~l~~~-----g-l~P~v~~~~~--~~~v~e~i~G~~  118 (267)
                                                       +|..+|.+.+..+++.     . ..|++|+-..  .-++|||++|.+
T Consensus       168 ~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~  247 (537)
T PRK04750        168 YRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIP  247 (537)
T ss_pred             HHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCcc
Confidence                                             2333455555555542     1 2588887533  238999999988


Q ss_pred             CC
Q 024452          119 LS  120 (267)
Q Consensus       119 l~  120 (267)
                      ++
T Consensus       248 l~  249 (537)
T PRK04750        248 VS  249 (537)
T ss_pred             HH
Confidence            75

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.40  E-value=6.4e-06  Score=71.19  Aligned_cols=47  Identities=11%  Similarity=0.036  Sum_probs=34.0

Q ss_pred             CcEEEEccCCCCCCeeeeCC------CCCEEEEeecccCc------chHhHHHHhhhhh
Q 024452          197 QEIGFCHNDLQYGNIMIDEE------TSSITIIVSFTFLQ------NMLNFKRACTKIL  243 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~------~~~v~lIDwE~a~~------~~~~fD~A~~~~~  243 (267)
                      +..+++|+|++++|||++.+      +..+.+||+|.+..      ..+.-|.+.+.+.
T Consensus       155 H~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~~~~~~~~~r~~dL~~L~~s  213 (268)
T PRK15123        155 HAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQIRARVPRRWRDKDLAGLYFS  213 (268)
T ss_pred             HHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccccCCCChHHHHHHHHHHHHH
Confidence            45669999999999999841      24689999998843      2445666665443

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.35  E-value=3.2e-06  Score=68.32  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeecC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIHA  116 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~G  116 (267)
                      |.+|..+.+|++....    .+..+++|++......  .....+|++.++.+...++ ++++.....    .++++|++|
T Consensus         1 l~~g~~~~v~~~~~~~----~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-~~~~~~~~~~~~~~~~~e~~~~   75 (215)
T cd00180           1 LGEGGFGTVYLARDKK----TGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNI-VKLYGVFEDENHLYLVMEYCEG   75 (215)
T ss_pred             CCcCCceEEEEEEecC----CCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCe-eeEeeeeecCCeEEEEEecCCC
Confidence            3567889999998643    3589999998765431  1112478888888866333 444444432    288999998


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..              .+...+   .  .  .+ ......+..                 .+...+..+.+      
T Consensus        76 ~~l~~--------------~~~~~~---~--~--~~-~~~~~~~~~-----------------~l~~~l~~lh~------  110 (215)
T cd00180          76 GSLKD--------------LLKENE---G--K--LS-EDEILRILL-----------------QILEGLEYLHS------  110 (215)
T ss_pred             CcHHH--------------HHHhcc---C--C--CC-HHHHHHHHH-----------------HHHHHHHHHHh------
Confidence            54432              111111   0  0  01 111111221                 12222233322      


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                        ..++|+|++++||++++.++.+.|+||+.+....
T Consensus       111 --~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~  144 (215)
T cd00180         111 --NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT  144 (215)
T ss_pred             --CCeeccCCCHhhEEEeCCCCcEEEecCCceEEcc
Confidence              2699999999999999723679999999887543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=98.34  E-value=3.4e-06  Score=75.55  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e  112 (267)
                      .+..|..|....||++....    ++..|++|+....... . ....+|+++++.+..-++. +++..+.+ +   +++|
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRP----TGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVV-KCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             hhhhccCCCCeEEEEEEECC----CCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcc-eeeeEeccCCeEEEEEe
Confidence            34567888889999997543    3578999987443211 1 1124688888777644443 34444432 2   7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+.......                           ...+..+..                 .+...++.|-+  
T Consensus       153 ~~~~~~L~~~~~~~---------------------------~~~~~~i~~-----------------qi~~aL~~LH~--  186 (353)
T PLN00034        153 FMDGGSLEGTHIAD---------------------------EQFLADVAR-----------------QILSGIAYLHR--  186 (353)
T ss_pred             cCCCCcccccccCC---------------------------HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            99987653211000                           001111111                 12223333322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|+++.|||++++ +.+.|+||..+.
T Consensus       187 ------~~ivHrDlkp~NIll~~~-~~~kL~DfG~~~  216 (353)
T PLN00034        187 ------RHIVHRDIKPSNLLINSA-KNVKIADFGVSR  216 (353)
T ss_pred             ------CCEeecCCCHHHEEEcCC-CCEEEcccccce
Confidence                  248999999999999874 689999998764

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.33  E-value=1.8e-06  Score=73.15  Aligned_cols=136  Identities=18%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccCh---HHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNR---DDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr---~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      +..|..|....||++....    ++..+++|+..........+   ..|+.+++.+....+ ++++....  +.  ++++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-~~~~~~~~~~~~~~~v~~   78 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKK----NGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNI-VQILDVFQDDNYLYIVME   78 (260)
T ss_dssp             EEEEEEESSEEEEEEEETT----TTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTB-CHEEEEEEESSEEEEEEE
T ss_pred             eEEEEeCCCEEEEEEEECC----CCeEEEEEEeccccccccccchhhhhhhcccccccccc-cccccccccccccccccc
Confidence            5677888889999998654    35789999986553221111   248888888843333 45555543  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      +++|.++..       ...          .    .. ..+ ...+..+..                 .+.+.+..|.+. 
T Consensus        79 ~~~~~~L~~-------~l~----------~----~~-~~~-~~~~~~~~~-----------------qi~~~L~~Lh~~-  117 (260)
T PF00069_consen   79 YCPGGSLQD-------YLQ----------K----NK-PLS-EEEILKIAY-----------------QILEALAYLHSK-  117 (260)
T ss_dssp             EETTEBHHH-------HHH----------H----HS-SBB-HHHHHHHHH-----------------HHHHHHHHHHHT-
T ss_pred             ccccccccc-------ccc----------c----cc-ccc-ccccccccc-----------------cccccccccccc-
Confidence            999864431       111          0    00 001 111221211                 122233344321 


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             .++|+|++|.||++++ ++.+.|+||+.+.
T Consensus       118 -------~i~H~dikp~NIl~~~-~~~~~l~Dfg~~~  146 (260)
T PF00069_consen  118 -------GIVHRDIKPENILLDE-NGEVKLIDFGSSV  146 (260)
T ss_dssp             -------TEEESSBSGGGEEEST-TSEEEESSGTTTE
T ss_pred             -------cccccccccccccccc-ccccccccccccc
Confidence                   5899999999999996 4689999999885

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.28  E-value=2.8e-05  Score=65.69  Aligned_cols=154  Identities=22%  Similarity=0.256  Sum_probs=96.2

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-----------------Ch--------HHHHHHHHHHHhCC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-----------------NR--------DDEIRTFECMSSQG   96 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-----------------dr--------~~E~~~~~~l~~~g   96 (267)
                      +|+.|=...||+....     ++..+.+|+|...+..+-                 ++        .+|+..|+.+.+.|
T Consensus        55 ~istGKEA~Vy~a~~~-----~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAG  129 (268)
T COG1718          55 CISTGKEANVYLAETG-----DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAG  129 (268)
T ss_pred             eecCCcceEEEeeccC-----CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6788889999997532     357888999865432111                 21        35888999999999


Q ss_pred             C-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccc
Q 024452           97 Q-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKE  175 (267)
Q Consensus        97 l-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  175 (267)
                      + +|+++...++-+|||||.........|.+.                    +..+.   .....               
T Consensus       130 VrvP~Pi~~~~nVLvMEfIg~~g~pAP~LkDv--------------------~~e~~---e~~~~---------------  171 (268)
T COG1718         130 VRVPEPIAFRNNVLVMEFIGDDGLPAPRLKDV--------------------PLELE---EAEGL---------------  171 (268)
T ss_pred             CCCCCceeecCCeEEEEeccCCCCCCCCcccC--------------------CcCch---hHHHH---------------
Confidence            7 699999887779999997653322233221                    00110   01111               


Q ss_pred             cchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHHHHhhhhh-heeeec
Q 024452          176 FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFKRACTKIL-LILTFS  249 (267)
Q Consensus       176 ~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD~A~~~~~-~~~~~~  249 (267)
                           ++..++.++..+    ....++||||..-|||+.+  +.++||||-=|-.  +|-+++..--|+- |..||.
T Consensus       172 -----~~~~v~~~~~l~----~~a~LVHgDLSEyNiL~~~--~~p~iID~~QaV~~~hp~a~e~L~RDv~Ni~~fF~  237 (268)
T COG1718         172 -----YEDVVEYMRRLY----KEAGLVHGDLSEYNILVHD--GEPYIIDVSQAVTIDHPNAFEFLERDVRNIARFFR  237 (268)
T ss_pred             -----HHHHHHHHHHHH----HhcCcccccchhhheEEEC--CeEEEEECccccccCCCchHHHHHHHHHHHHHHHH
Confidence                 112222233222    1234999999999999993  5899999998754  6666664433332 344444

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=98.27  E-value=3.6e-06  Score=77.13  Aligned_cols=139  Identities=13%  Similarity=0.094  Sum_probs=87.5

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      +.-.+.+|..|.-.+||.++-.+    .+.-|.+|+-.+..    ........|..+|.. ++.....++|+.+.+.   
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~----Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~-~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKD----TGEIYAMKILKKSEMLKKNQVEHVRAERDILAE-VDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             cchhheeeccccceeEEEEEEcc----CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh-cCCCcEEEEEEEecCCCee
Confidence            34457888999999999998543    36788899876532    001112356666655 4445667888888654   


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHH-HHHhhccCcccccccchhhHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWV-SVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       +||||+||..+.              ..|.+.-.          +-+.+.+++ ..                 +.-.++
T Consensus       217 YLiMEylPGGD~m--------------TLL~~~~~----------L~e~~arfYiaE-----------------~vlAI~  255 (550)
T KOG0605|consen  217 YLIMEYLPGGDMM--------------TLLMRKDT----------LTEDWARFYIAE-----------------TVLAIE  255 (550)
T ss_pred             EEEEEecCCccHH--------------HHHHhcCc----------CchHHHHHHHHH-----------------HHHHHH
Confidence             899999985432              12211111          112233222 11                 111122


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+        +..+++|+|++|.|+|+|.. |-+.|=||..|.
T Consensus       256 ~i--------H~~gyIHRDIKPdNlLiD~~-GHiKLSDFGLs~  289 (550)
T KOG0605|consen  256 SI--------HQLGYIHRDIKPDNLLIDAK-GHIKLSDFGLST  289 (550)
T ss_pred             HH--------HHcCcccccCChhheeecCC-CCEeeccccccc
Confidence            22        44669999999999999985 679999999995

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.22  E-value=8e-06  Score=72.21  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=78.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      +..|..|....||++....    .+..+.+|+.....    ........|..++..+......+.++..+.  +.  +|+
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKG----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             EEEEeeccCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            5667778889999998543    35689999875421    111111356666666654444555555543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..              .+.+   ..    . .. ......|..                 .+...+..+-+ 
T Consensus        81 E~~~~g~L~~--------------~~~~---~~----~-~~-~~~~~~~~~-----------------qi~~al~~lH~-  119 (324)
T cd05587          81 EYVNGGDLMY--------------HIQQ---VG----K-FK-EPHAVFYAA-----------------EIAIGLFFLHS-  119 (324)
T ss_pred             cCCCCCcHHH--------------HHHH---cC----C-CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9998865421              0100   00    0 00 011111221                 12223333322 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       120 -------~~ivH~dlkp~Nill~~~-~~~kL~Dfg~~~  149 (324)
T cd05587         120 -------KGIIYRDLKLDNVMLDAE-GHIKIADFGMCK  149 (324)
T ss_pred             -------CCeEecCCCHHHeEEcCC-CCEEEeecCcce
Confidence                   359999999999999874 689999999764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.21  E-value=1.5e-05  Score=68.71  Aligned_cols=141  Identities=11%  Similarity=0.105  Sum_probs=81.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE-----CC----eeE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF-----GD----GRV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-----~~----~~v  110 (267)
                      +..|..|..+.+|++....    .+..+.+|+........-+..+|..+++.+.++.-.+++++.+     ++    .++
T Consensus        23 ~~~lg~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv   98 (286)
T cd06638          23 IETIGKGTYGKVFKVLNKK----NGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLV   98 (286)
T ss_pred             eeeeccCCCcEEEEEEECC----CCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEE
Confidence            4567788888999997543    3578889986542211111246888888887665555566543     12    188


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       ...+....   . . ....+..+..                 .+...+..+- 
T Consensus        99 ~e~~~~~~L~~-------~l-------~~~~~~~~---~-~-~~~~~~~~~~-----------------~i~~~l~~lH-  141 (286)
T cd06638          99 LELCNGGSVTD-------LV-------KGFLKRGE---R-M-EEPIIAYILH-----------------EALMGLQHLH-  141 (286)
T ss_pred             EeecCCCCHHH-------HH-------HHhhccCc---c-c-cHHHHHHHHH-----------------HHHHHHHHHH-
Confidence            99999876642       11       11111100   0 0 0111111211                 1122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       142 -------~~~i~H~dlkp~nili~~~-~~~kl~dfg~~~  172 (286)
T cd06638         142 -------VNKTIHRDVKGNNILLTTE-GGVKLVDFGVSA  172 (286)
T ss_pred             -------hCCccccCCCHHhEEECCC-CCEEEccCCcee
Confidence                   1248999999999999874 679999999774

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PRK09902 hypothetical protein; Provisional

Probab=98.18  E-value=2.9e-05  Score=64.45  Aligned_cols=50  Identities=8%  Similarity=-0.049  Sum_probs=38.6

Q ss_pred             CcEEEEccCCCCCCeeeeCCCC-CEEEEeecccCcchHhHHHHhhhhhhee
Q 024452          197 QEIGFCHNDLQYGNIMIDEETS-SITIIVSFTFLQNMLNFKRACTKILLIL  246 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~-~v~lIDwE~a~~~~~~fD~A~~~~~~~~  246 (267)
                      +..+++|+|+.+.||+++.+++ .+.+||||-+.......-.+.-|+.-+.
T Consensus       145 H~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~~l~~~~~~~~Dl~~l~  195 (216)
T PRK09902        145 HSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLE  195 (216)
T ss_pred             HHCCCcCCCCCHhheeecCCCCeeEEEEEhhccchhhhhhhhhHhHHHHHH
Confidence            4556999999999999985432 3999999999887766666666766555

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=98.17  E-value=1.1e-05  Score=72.74  Aligned_cols=137  Identities=16%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v  110 (267)
                      .+..|..|....||++....    .+..+.+|+.....    .......+|+.+++.+....+. +++..+. ++   +|
T Consensus         5 ~~~~lG~G~~g~V~~a~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv-~~~~~~~~~~~~~lv   79 (376)
T cd05598           5 KIKTIGIGAFGEVCLVRKVD----TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVV-KLYYSFQDKDNLYFV   79 (376)
T ss_pred             EEEEEEeCCCeEEEEEEECC----CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcc-eEEEEEEcCCEEEEE
Confidence            46778888889999998543    35789999875321    0011123677787777554443 4454443 22   78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       .       +.+   ..    ..+  ......|..+                 +...++.+-+
T Consensus        80 ~E~~~~g~L~~-------~-------i~~---~~----~~~--~~~~~~~~~q-----------------i~~al~~lH~  119 (376)
T cd05598          80 MDYIPGGDMMS-------L-------LIR---LG----IFE--EDLARFYIAE-----------------LTCAIESVHK  119 (376)
T ss_pred             EeCCCCCcHHH-------H-------HHh---cC----CCC--HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865532       1       111   00    000  0112222221                 2222233322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       120 --------~~ivHrDlkp~Nill~~~-~~ikL~DFG~a~  149 (376)
T cd05598         120 --------MGFIHRDIKPDNILIDRD-GHIKLTDFGLCT  149 (376)
T ss_pred             --------CCeEeCCCCHHHEEECCC-CCEEEEeCCCCc
Confidence                    348999999999999874 689999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.16  E-value=1.5e-05  Score=74.65  Aligned_cols=165  Identities=16%  Similarity=0.241  Sum_probs=97.3

Q ss_pred             cCCCChHHHHHHHHHhCCC-CCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-------
Q 024452            9 LPSSSPEELKKVLQSVASD-WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-------   80 (267)
Q Consensus         9 ~~~~~~~~~~~l~~~~~p~-w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-------   80 (267)
                      .|.+..+++.+++++-++. ..++.   +.++=+||...--..||+..+.+     +.+++||+..++.+..+       
T Consensus       137 ~Pp~~~ee~~~i~e~ElG~~ie~if---~~f~~~piaaASlaQVhrA~L~~-----G~~VaVKVQ~P~l~~~~~~Dl~~~  208 (538)
T KOG1235|consen  137 APPFPWEEAFKIFEEELGAPIEDIF---SEFDEEPIAAASLAQVHRARLKN-----GEDVAVKVQHPGLEKLIMLDLRNL  208 (538)
T ss_pred             CCCCCHHHHHHHHHHHhCCCHHHHH---HhcCcchhhhcchhheEEEEecC-----CCEEEEEecCcChHHHHHHHHHHH
Confidence            5778889999999888754 11111   22344566554457899998763     68999999988743221       


Q ss_pred             -------------------------------ChHHHHHHH----HHHHhCC-----CCceEEEEECCe--eEEEeecCCC
Q 024452           81 -------------------------------NRDDEIRTF----ECMSSQG-----QGPRLLGRFGDG--RVEEFIHART  118 (267)
Q Consensus        81 -------------------------------dr~~E~~~~----~~l~~~g-----l~P~v~~~~~~~--~v~e~i~G~~  118 (267)
                                                     |--.|++..    +.+++..     ..|+||+....-  ++|||++|..
T Consensus       209 ~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~  288 (538)
T KOG1235|consen  209 RLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIK  288 (538)
T ss_pred             HHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCcc
Confidence                                           111233333    2333333     269999876433  7899999988


Q ss_pred             CCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCc
Q 024452          119 LSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQE  198 (267)
Q Consensus       119 l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~  198 (267)
                      ++.-+     ..+          +...    .+.         +                 ......+.+.+++    ..
T Consensus       289 i~Dl~-----~i~----------~~gi----~~~---------~-----------------i~~~l~~~~~~qI----f~  319 (538)
T KOG1235|consen  289 INDLD-----AID----------KRGI----SPH---------D-----------------ILNKLVEAYLEQI----FK  319 (538)
T ss_pred             CCCHH-----HHH----------HcCC----CHH---------H-----------------HHHHHHHHHHHHH----Hh
Confidence            87520     000          0000    000         0                 0011111222221    23


Q ss_pred             EEEEccCCCCCCeeeeCC---CCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEE---TSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~---~~~v~lIDwE~a~~  230 (267)
                      .+|.|+|+|||||+++++   +..+++.|+...+.
T Consensus       320 ~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  320 TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             cCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            449999999999999942   45799999988775

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.12  E-value=1.4e-05  Score=70.58  Aligned_cols=134  Identities=15%  Similarity=0.094  Sum_probs=77.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~i  114 (267)
                      |..|....||++....    .+..+.+|+.....   .... ....|..++..+..+...++++..+.+ +   +|+||+
T Consensus         3 lG~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~   78 (321)
T cd05591           3 LGKGSFGKVMLAELKG----TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYV   78 (321)
T ss_pred             cccCCCeEEEEEEECC----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCC
Confidence            5667778999997543    35788999875431   1111 113566666666566555666666542 2   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..          .+    .+-..        .. ......+..                 .+...+..|-     
T Consensus        79 ~~~~L~~----------~l----~~~~~--------~~-~~~~~~~~~-----------------qi~~aL~~LH-----  113 (321)
T cd05591          79 NGGDLMF----------QI----QRSRK--------FD-EPRSRFYAA-----------------EVTLALMFLH-----  113 (321)
T ss_pred             CCCcHHH----------HH----HHcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            9865421          01    00000        00 011111211                 1222333332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       114 ---~~~ivHrDikp~Nill~~~-~~~kL~Dfg~~~  144 (321)
T cd05591         114 ---RHGVIYRDLKLDNILLDAE-GHCKLADFGMCK  144 (321)
T ss_pred             ---HCCeeccCCCHHHeEECCC-CCEEEeecccce
Confidence               2248999999999999874 689999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=98.12  E-value=1.6e-05  Score=70.44  Aligned_cols=137  Identities=16%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -+..|..|....||++....    .+..+++|+......    .......|..++..+....+ ++++..+.+  .  +|
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-v~~~~~~~~~~~~~lv   79 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKD----TGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWL-VKLLYAFQDDEYLYLA   79 (333)
T ss_pred             EEEEEeecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCC-ccEEEEEEcCCEEEEE
Confidence            46677888889999998643    357888998754211    11112357777776653333 445544432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       .   ...   .  .. ......+..+                 +...+..|- 
T Consensus        80 ~e~~~g~~L~~-------~l-------~---~~~---~--l~-~~~~~~~~~q-----------------i~~~l~~lH-  118 (333)
T cd05600          80 MEYVPGGDFRT-------LL-------N---NLG---V--LS-EDHARFYMAE-----------------MFEAVDALH-  118 (333)
T ss_pred             EeCCCCCCHHH-------HH-------H---HcC---C--CC-HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99999876532       11       0   000   0  00 1112222221                 122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       119 -------~~~ivH~dlkp~Nil~~~~-~~~kL~Dfg~a~  149 (333)
T cd05600         119 -------ELGYIHRDLKPENFLIDAS-GHIKLTDFGLSK  149 (333)
T ss_pred             -------HCCccccCCCHHHEEECCC-CCEEEEeCcCCc
Confidence                   1248999999999999874 689999999775

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=98.10  E-value=1.5e-05  Score=71.50  Aligned_cols=137  Identities=11%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      .+..|..|....||++....    .+..+.+|+.....   ..... ...|..++..+.... .++++..+.+    .+|
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-iv~~~~~~~~~~~~~lv   79 (360)
T cd05627           5 SLKVIGRGAFGEVRLVQKKD----TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAW-VVKMFYSFQDKRNLYLI   79 (360)
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCEEEEE
Confidence            46777888889999998643    35788899864321   11111 135666666553322 3445554432    288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+   ..    . . .......|..++                 ...++.+- 
T Consensus        80 ~E~~~gg~L~~--------------~l~~---~~----~-l-~~~~~~~~~~qi-----------------~~~L~~lH-  118 (360)
T cd05627          80 MEFLPGGDMMT--------------LLMK---KD----T-L-SEEATQFYIAET-----------------VLAIDAIH-  118 (360)
T ss_pred             EeCCCCccHHH--------------HHHh---cC----C-C-CHHHHHHHHHHH-----------------HHHHHHHH-
Confidence            99999865532              1110   00    0 0 011122232221                 12223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       119 -------~~givHrDLkp~NIli~~~-~~vkL~DfG~~~  149 (360)
T cd05627         119 -------QLGFIHRDIKPDNLLLDAK-GHVKLSDFGLCT  149 (360)
T ss_pred             -------HCCeEccCCCHHHEEECCC-CCEEEeeccCCc
Confidence                   2358999999999999874 689999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.08  E-value=2.5e-05  Score=65.94  Aligned_cols=142  Identities=18%  Similarity=0.135  Sum_probs=79.2

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~i  114 (267)
                      ..+..|..+.+|++......+.....+++|.......  .......|+..++.+...++ .+++....+ +   ++++|+
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~i~e~~   83 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNI-VKLLGVCTEEEPLMIVMEYM   83 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCch-heEEEEEcCCCeeEEEEecc
Confidence            4567777889999986532111236788888765432  11122468888888844344 445544432 2   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++...       ...          ...  .. . ....+..+..                 .+...+..+.     
T Consensus        84 ~~~~l~~~-------~~~----------~~~--~~-~-~~~~~~~~~~-----------------ql~~~l~~lh-----  120 (258)
T smart00219       84 EGGDLLDY-------LRK----------NRP--KE-L-SLSDLLSFAL-----------------QIARGMEYLE-----  120 (258)
T ss_pred             CCCCHHHH-------HHh----------hhh--cc-C-CHHHHHHHHH-----------------HHHHHHHHHh-----
Confidence            98655321       100          000  00 0 0011111211                 1122222221     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         ...++|+|++|+||+++++ +.+.++||+.+..
T Consensus       121 ---~~~~~h~dl~~~nil~~~~-~~~~l~dfg~~~~  152 (258)
T smart00219      121 ---SKNFIHRDLAARNCLVGEN-LVVKISDFGLSRD  152 (258)
T ss_pred             ---cCCeeecccccceEEEccC-CeEEEcccCCcee
Confidence               2258999999999999874 6799999998853

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=98.08  E-value=3.1e-05  Score=65.93  Aligned_cols=140  Identities=16%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-C---eeEE
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-D---GRVE  111 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~---~~v~  111 (267)
                      .++ ...+..|....+|++....     +..+++|.........-+-.+|+.+++.+...++. +++..+. +   .+++
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~-----~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~   80 (261)
T cd05068           7 SIQLLRKLGAGQFGEVWEGLWNN-----TTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLI-QLYAVCTLEEPIYIVT   80 (261)
T ss_pred             heeeEEEecccCCccEEEEEecC-----CeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCcc-ceeEEEecCCCeeeee
Confidence            344 4666777788999987432     36788998754432111123677777777644443 3444433 2   2789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...       .   ..  .. ... ...+..+..                 .+...+..+.  
T Consensus        81 e~~~~~~L~~-------~~~-------~---~~--~~-~~~-~~~~~~~~~-----------------~i~~~l~~lH--  120 (261)
T cd05068          81 ELMKYGSLLE-------YLQ-------G---GA--GR-ALK-LPQLIDMAA-----------------QVASGMAYLE--  120 (261)
T ss_pred             ecccCCcHHH-------HHh-------c---cC--CC-CCC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9988765532       110       0   00  00 011 111222211                 1122222332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       121 ------~~~i~H~dl~p~Nil~~~~-~~~~l~dfg~~~  151 (261)
T cd05068         121 ------AQNYIHRDLAARNVLVGEN-NICKVADFGLAR  151 (261)
T ss_pred             ------hCCeeeccCCcceEEEcCC-CCEEECCcceEE
Confidence                  2248999999999999974 679999998764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=98.08  E-value=1.8e-05  Score=71.18  Aligned_cols=137  Identities=12%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .+..|..|..+.||++....    .+..+.+|+.....   .... ....|..++..+.... .++.+..+.+  .  +|
T Consensus         5 ~~~~LG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~-iv~~~~~~~~~~~~~lv   79 (363)
T cd05628           5 SLKVIGRGAFGEVRLVQKKD----TGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLW-VVKMFYSFQDKLNLYLI   79 (363)
T ss_pred             EeEEEEeCCCEEEEEEEECC----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCC-cceEEEEEecCCeEEEE
Confidence            45677888889999997543    35789999875321   0111 1135666666654322 3445554432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..          .    +.   ...    . .. ......+..+                 +...++.+- 
T Consensus        80 ~E~~~gg~L~~----------~----l~---~~~----~-l~-~~~~~~~~~q-----------------i~~aL~~lH-  118 (363)
T cd05628          80 MEFLPGGDMMT----------L----LM---KKD----T-LT-EEETQFYIAE-----------------TVLAIDSIH-  118 (363)
T ss_pred             EcCCCCCcHHH----------H----HH---hcC----C-CC-HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99999865431          0    11   000    0 00 1112222221                 112223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       119 -------~~givHrDlKp~NILi~~~-~~vkL~DFGla~  149 (363)
T cd05628         119 -------QLGFIHRDIKPDNLLLDSK-GHVKLSDFGLCT  149 (363)
T ss_pred             -------hCCeEecCCCHHHeEECCC-CCEEEeeccCcc
Confidence                   2358999999999999874 689999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.07  E-value=2e-05  Score=69.79  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ...|..|..+.||++....    .+..|.+|+.....    ........|..++..+......+.++..+.  +.  +|+
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           5 LMVLGKGSFGKVMLAERKG----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             EEEEEecCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            4567888889999998543    35789999875421    111111346666666655555566665543  22  789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..              .+.+...        .. ......+..                 .+...+..+-  
T Consensus        81 Ey~~~g~L~~--------------~i~~~~~--------l~-~~~~~~i~~-----------------qi~~al~~lH--  118 (323)
T cd05615          81 EYVNGGDLMY--------------HIQQVGK--------FK-EPQAVFYAA-----------------EISVGLFFLH--  118 (323)
T ss_pred             cCCCCCcHHH--------------HHHHcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9999865521              0111000        00 011111211                 1222233332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++.+ +.+.|+||..|.
T Consensus       119 ------~~~ivHrDikp~Nill~~~-~~ikL~Dfg~~~  149 (323)
T cd05615         119 ------RRGIIYRDLKLDNVMLDSE-GHIKIADFGMCK  149 (323)
T ss_pred             ------HCCeeccCCCHHHeEECCC-CCEEEecccccc
Confidence                  2358999999999999974 689999998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.07  E-value=3.6e-05  Score=66.71  Aligned_cols=137  Identities=18%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i  114 (267)
                      +..+..|....+|++....    .+..+++|........ ..+..+|+.+++.+...+ .++++..+. ++   ++++|+
T Consensus        17 ~~~lg~g~~g~vy~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKE----TGALAAAKVIETKSEEELEDYMVEIEILATCNHPY-IVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hheecCCCCeEEEEEEECC----CCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCc-EeeeEEEEEeCCeEEEEEecC
Confidence            4567778888999998643    3578888887544321 111235666666665333 344444432 22   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..       +..          +...+    .. ......+..+                 +...+..+.     
T Consensus        92 ~~~~l~~-------~~~----------~~~~~----l~-~~~~~~~~~q-----------------l~~~l~~lH-----  127 (292)
T cd06644          92 PGGAVDA-------IML----------ELDRG----LT-EPQIQVICRQ-----------------MLEALQYLH-----  127 (292)
T ss_pred             CCCcHHH-------HHH----------hhcCC----CC-HHHHHHHHHH-----------------HHHHHHHHh-----
Confidence            9876531       000          00000    00 0111112211                 112222222     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||+++. ++.+.|+||..+.
T Consensus       128 ---~~~i~H~dlkp~Nili~~-~~~~kl~dfg~~~  158 (292)
T cd06644         128 ---SMKIIHRDLKAGNVLLTL-DGDIKLADFGVSA  158 (292)
T ss_pred             ---cCCeeecCCCcceEEEcC-CCCEEEccCccce
Confidence               235899999999999986 4689999998764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.07  E-value=1.2e-05  Score=71.14  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~  113 (267)
                      .|..|....||++....    ++..+.+|+.....    ........|..++..+..+...++++..+.+  .  +|+||
T Consensus         2 ~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey   77 (320)
T cd05590           2 VLGKGSFGKVMLARLKE----SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEF   77 (320)
T ss_pred             eeeeCCCeEEEEEEEcC----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcC
Confidence            35667788999998543    35788899765321    1111112466666555555445556655432  2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..              .+.+-+.        .. ......+..                 .+...+..+-    
T Consensus        78 ~~~g~L~~--------------~i~~~~~--------l~-~~~~~~~~~-----------------ql~~~L~~lH----  113 (320)
T cd05590          78 VNGGDLMF--------------HIQKSRR--------FD-EARARFYAA-----------------EITSALMFLH----  113 (320)
T ss_pred             CCCchHHH--------------HHHHcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH----
Confidence            99865421              1111000        00 011111111                 1222233332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       114 ----~~~ivH~dlkp~NIli~~~-~~~kL~DfG~~~  144 (320)
T cd05590         114 ----DKGIIYRDLKLDNVLLDHE-GHCKLADFGMCK  144 (320)
T ss_pred             ----HCCeEeCCCCHHHeEECCC-CcEEEeeCCCCe
Confidence                2348999999999999874 689999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.04  E-value=4.5e-05  Score=65.00  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--C--------ee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--------GR  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--------~~  109 (267)
                      ...+..|....+|++....    .+..+++|+.........+-.+|..+++.+..+.-.+++++.+.  .        .+
T Consensus        11 ~~~l~~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~l   86 (275)
T cd06608          11 VEVIGEGTYGKVYKARHKK----TGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWL   86 (275)
T ss_pred             eeeecCCCCeEEEEEEECC----CCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEE
Confidence            5666777778999998643    35788899876543221122478888888866665566666541  1        27


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|++|.++..           +   +.+......    ... ......+..                 .+...+..+.
T Consensus        87 v~e~~~~~~L~~-----------~---~~~~~~~~~----~~~-~~~~~~~~~-----------------ql~~al~~lH  130 (275)
T cd06608          87 VMELCGGGSVTD-----------L---VKGLRKKGK----RLK-EEWIAYILR-----------------ETLRGLAYLH  130 (275)
T ss_pred             EEEcCCCCcHHH-----------H---HHHHhhcCC----CCC-HHHHHHHHH-----------------HHHHHHHHHh
Confidence            899998865531           1   111110000    000 011111111                 1222223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       131 --------~~~i~H~~l~p~ni~~~~~-~~~~l~d~~~~~  161 (275)
T cd06608         131 --------ENKVIHRDIKGQNILLTKN-AEVKLVDFGVSA  161 (275)
T ss_pred             --------cCCcccCCCCHHHEEEccC-CeEEECCCccce
Confidence                    2358999999999999874 679999998764

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.04  E-value=2.4e-05  Score=66.11  Aligned_cols=135  Identities=19%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      .|..|....+|+++...    ++..+.+|....... ... .-.+|.++++.+..-++ +++++.+.+    .+++||++
T Consensus         2 ~lg~g~~g~vy~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~~   76 (252)
T cd05084           2 RIGRGNFGEVFSGRLRA----DNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNI-VRLIGVCTQKQPIYIVMELVQ   76 (252)
T ss_pred             ccCcccCccEEEEEEec----CCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCc-ceEEEEEcCCCCeEEEEeecc
Confidence            35666678999987643    357888997654321 111 12467777777754343 445555432    28899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       .       +   +....   . .. ......+..                 .+.+.+..+.      
T Consensus        77 ~~~L~~-------~-------~---~~~~~---~-~~-~~~~~~~~~-----------------qi~~~L~~lH------  111 (252)
T cd05084          77 GGDFLT-------F-------L---RTEGP---R-LK-VKELIQMVE-----------------NAAAGMEYLE------  111 (252)
T ss_pred             CCcHHH-------H-------H---HhCCC---C-CC-HHHHHHHHH-----------------HHHHHHHHHH------
Confidence            865531       0       1   11000   0 01 111111221                 1222223332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       112 --~~~i~H~dl~p~nil~~~~-~~~kl~dfg~~~  142 (252)
T cd05084         112 --SKHCIHRDLAARNCLVTEK-NVLKISDFGMSR  142 (252)
T ss_pred             --hCCccccccchheEEEcCC-CcEEECccccCc
Confidence              2248999999999999874 679999998765

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.04  E-value=4.4e-05  Score=67.60  Aligned_cols=140  Identities=11%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----cccc-ChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG-DG---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v  110 (267)
                      +..|..|..+.||++..... ...+..+.+|+.....    .... ....|..+++.+..+....+++..+. ++   ++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTG-HDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLI   83 (332)
T ss_pred             EEEEeecCCEEEEEEEEccc-CCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEE
Confidence            56677788889999874321 1135778889875321    0111 11367778877766544455555543 22   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+..          .+    .+   ..   .  . ....+..+..+                 +...+..|- 
T Consensus        84 ~e~~~~g~L~~----------~l----~~---~~---~--~-~~~~~~~~~~q-----------------i~~~l~~lH-  122 (332)
T cd05614          84 LDYVSGGEMFT----------HL----YQ---RD---N--F-SEDEVRFYSGE-----------------IILALEHLH-  122 (332)
T ss_pred             EeCCCCCcHHH----------HH----HH---cC---C--C-CHHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99998865421          01    00   00   0  0 01122222221                 222233332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++++ +.+.|+||..+.
T Consensus       123 -------~~~ivHrDlkp~Nili~~~-~~~kl~DfG~~~  153 (332)
T cd05614         123 -------KLGIVYRDIKLENILLDSE-GHVVLTDFGLSK  153 (332)
T ss_pred             -------HCCcEecCCCHHHeEECCC-CCEEEeeCcCCc
Confidence                   2348999999999999874 689999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=98.04  E-value=2.2e-05  Score=69.45  Aligned_cols=138  Identities=16%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -...|..|....||++....    .+..+++|+......   .... ...|..+++.+. +...++++..+.+  .  +|
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~-~~~i~~~~~~~~~~~~~~lv   79 (330)
T cd05601           5 VKSLVGRGHFGEVQVVREKA----TGDIYAMKVMKKSVLLAQETVSFFEEERDILSISN-SPWIPQLQYAFQDKDNLYLV   79 (330)
T ss_pred             EEEEEEeccCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCC-CCCCcceeeEEecCCeEEEE
Confidence            35667788888999997543    357888998754211   0111 134555555443 2333455554432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.+.   ..+.   +  ...+..+..+                 +...++.+- 
T Consensus        80 ~e~~~~~~L~~--------------~l~~~---~~~l---~--~~~~~~~~~q-----------------i~~aL~~lH-  119 (330)
T cd05601          80 MEYQPGGDLLS--------------LLNRY---EDQF---D--EDMAQFYLAE-----------------LVLAIHSVH-  119 (330)
T ss_pred             ECCCCCCCHHH--------------HHHHh---cCCC---C--HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99998865531              11110   0000   0  1112222211                 222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       120 -------~~~i~H~Dlkp~NIll~~~-~~~kL~Dfg~a~  150 (330)
T cd05601         120 -------QMGYVHRDIKPENVLIDRT-GHIKLADFGSAA  150 (330)
T ss_pred             -------HCCeEcccCchHheEECCC-CCEEeccCCCCe
Confidence                   2348999999999999874 789999999774

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=98.04  E-value=2e-05  Score=69.74  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---c-cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---E-VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      |..|....||++....    .+..+++|+.....   . .......|..+++.+..-.+ +++++.+.  +.  +|+||+
T Consensus         3 lG~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-~~~~~~~~~~~~~~lv~E~~   77 (323)
T cd05595           3 LGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL-TALKYAFQTHDRLCFVMEYA   77 (323)
T ss_pred             eeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC-cceeeEEecCCEEEEEEeCC
Confidence            5667778999997543    35788999875421   1 11111256666666644333 34444433  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..              .+.   ... +    .. ......+..                 .+...+..|-     
T Consensus        78 ~~~~L~~--------------~l~---~~~-~----~~-~~~~~~~~~-----------------qi~~aL~~LH-----  112 (323)
T cd05595          78 NGGELFF--------------HLS---RER-V----FT-EERARFYGA-----------------EIVSALEYLH-----  112 (323)
T ss_pred             CCCcHHH--------------HHH---HcC-C----CC-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            9865521              010   000 0    00 111222221                 1222333332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.|||++++ +.+.|+||..|.
T Consensus       113 ---~~~ivH~Dlkp~NIll~~~-~~~kL~Dfg~~~  143 (323)
T cd05595         113 ---SRDVVYRDIKLENLMLDKD-GHIKITDFGLCK  143 (323)
T ss_pred             ---HCCeEecCCCHHHEEEcCC-CCEEecccHHhc
Confidence               1259999999999999874 689999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.04  E-value=6.5e-05  Score=65.54  Aligned_cols=137  Identities=12%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccCh-HHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNR-DDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      ..+..+..|..+.+|++....    .+..+++|..........++ .+|..+++.+...++. +++....+  .  ++++
T Consensus        22 ~~~~~lg~g~~g~vy~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          22 TRYEKIGQGASGTVFTAIDVA----TGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIV-NFLDSFLVGDELFVVME   96 (296)
T ss_pred             EEEEEEecCCCeEEEEEEEcC----CCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCcee-eeeeeEecCceEEEEEE
Confidence            456677888888999986432    35788888764332111111 3577777776544443 34544332  2  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..       ..       .   ....      . .........                 .+...+..+-+  
T Consensus        97 ~~~~~~L~~-------~~-------~---~~~l------~-~~~~~~i~~-----------------~l~~al~~LH~--  133 (296)
T cd06655          97 YLAGGSLTD-------VV-------T---ETCM------D-EAQIAAVCR-----------------ECLQALEFLHA--  133 (296)
T ss_pred             ecCCCcHHH-------HH-------H---hcCC------C-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            998866532       01       0   0000      0 011111111                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++. ++.+.|+||+.+.
T Consensus       134 ------~~i~H~dL~p~Nili~~-~~~~kl~dfg~~~  163 (296)
T cd06655         134 ------NQVIHRDIKSDNVLLGM-DGSVKLTDFGFCA  163 (296)
T ss_pred             ------CCcccCCCCHHHEEECC-CCCEEEccCccch
Confidence                  24789999999999987 4689999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.03  E-value=3.6e-05  Score=65.54  Aligned_cols=137  Identities=16%  Similarity=0.185  Sum_probs=77.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC---eeEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~i~G  116 (267)
                      ...|..|....+|++....     ...+++|...........-.+|+.+++.+...++.| +++....   .++++|++|
T Consensus        11 ~~~ig~g~~~~v~~~~~~~-----~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~-~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05069          11 DVKLGQGCFGEVWMGTWNG-----TTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVP-LYAVVSEEPIYIVTEFMGK   84 (260)
T ss_pred             eeeecCcCCCeEEEEEEcC-----CceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeee-EEEEEcCCCcEEEEEcCCC
Confidence            3456777778999997532     356888876543221111146888888887656555 3444332   288999887


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..              .+.   ....  . ... ......+..                 .+...+..+-       
T Consensus        85 ~~L~~--------------~~~---~~~~--~-~~~-~~~~~~~~~-----------------~l~~al~~lH-------  119 (260)
T cd05069          85 GSLLD--------------FLK---EGDG--K-YLK-LPQLVDMAA-----------------QIADGMAYIE-------  119 (260)
T ss_pred             CCHHH--------------HHh---hCCC--C-CCC-HHHHHHHHH-----------------HHHHHHHHHH-------
Confidence            65432              111   1000  0 011 111111211                 1222333332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ...++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       120 -~~~i~H~dl~~~Nill~~~-~~~~l~dfg~~~  150 (260)
T cd05069         120 -RMNYIHRDLRAANILVGDN-LVCKIADFGLAR  150 (260)
T ss_pred             -hCCEeecccCcceEEEcCC-CeEEECCCccce
Confidence             2248999999999999874 678999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=98.03  E-value=1.3e-05  Score=71.87  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      .+..|..|....||++....    .+..+++|+.....    .......+|..+++.+... ..++++..+.++    +|
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~-~iv~~~~~~~~~~~~~lv   79 (364)
T cd05599           5 SIKVIGRGAFGEVRLVQKKD----TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNP-WVVKLYYSFQDENYLYLI   79 (364)
T ss_pred             EEEEEEecCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCC-CCcceEEEEEcCCeEEEE
Confidence            45677888889999998543    35788999875321    1111113677787777532 334455554322    78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+   +...    . .. ......+..+                 +...++.+- 
T Consensus        80 ~E~~~~g~L~~--------------~l---~~~~----~-l~-~~~~~~~~~q-----------------i~~aL~~lH-  118 (364)
T cd05599          80 MEYLPGGDMMT--------------LL---MKKD----T-FT-EEETRFYIAE-----------------TILAIDSIH-  118 (364)
T ss_pred             ECCCCCcHHHH--------------HH---HHcC----C-CC-HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99998765431              11   1100    0 00 1112222221                 222233332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       119 -------~~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~~~  149 (364)
T cd05599         119 -------KLGYIHRDIKPDNLLLDAK-GHIKLSDFGLCT  149 (364)
T ss_pred             -------HCCeEeccCCHHHeEECCC-CCEEEeecccce
Confidence                   1348999999999999874 689999999875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=98.02  E-value=3.1e-05  Score=68.67  Aligned_cols=134  Identities=17%  Similarity=0.192  Sum_probs=78.2

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i  114 (267)
                      |..|....||++....    .+..+.+|+.....   ....+ ...|..+++.+..+...++++..+.+  .  +|+||+
T Consensus         3 lG~G~~g~V~~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~   78 (329)
T cd05588           3 IGRGSYAKVLLVELKK----TRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFV   78 (329)
T ss_pred             EeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCC
Confidence            5667778999998643    35788899875421   11111 23677777777666555666666532  2  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..              .+.+-+.  .     +  ......+..                 .+...+..+.     
T Consensus        79 ~~g~L~~--------------~~~~~~~--l-----~--~~~~~~~~~-----------------qi~~~l~~lH-----  113 (329)
T cd05588          79 SGGDLMF--------------HMQRQRK--L-----P--EEHARFYSA-----------------EISLALNFLH-----  113 (329)
T ss_pred             CCCCHHH--------------HHHHcCC--C-----C--HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            9865421              0100000  0     0  011111221                 1222333332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       114 ---~~~ivH~dlkp~Nili~~~-~~~kL~Dfg~~~  144 (329)
T cd05588         114 ---ERGIIYRDLKLDNVLLDAE-GHIKLTDYGMCK  144 (329)
T ss_pred             ---HCCeEecCCCHHHeEECCC-CCEEECcCcccc
Confidence               2359999999999999874 689999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=98.02  E-value=3.1e-05  Score=68.26  Aligned_cols=137  Identities=14%  Similarity=0.140  Sum_probs=75.8

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEee
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFI  114 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i  114 (267)
                      .|..|....||++..... ...+..+.+|+.......   ......|.++++.+..-++. +++..+. ++   +|+||+
T Consensus         3 ~lg~G~~g~Vy~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           3 VLGQGSFGKVFLVRKITG-PDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIV-KLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             eeeeCCCEEEEEEEEecc-CCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcc-cEEEEEEcCCEEEEEEcCC
Confidence            466677789999864211 113578889987542211   11113577777777544444 3444443 22   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..              .+   +.. .     .-....+..|..+                 +...+..|-+    
T Consensus        81 ~~~~L~~--------------~l---~~~-~-----~l~~~~~~~~~~q-----------------i~~~l~~lH~----  116 (318)
T cd05582          81 RGGDLFT--------------RL---SKE-V-----MFTEEDVKFYLAE-----------------LALALDHLHS----  116 (318)
T ss_pred             CCCcHHH--------------HH---HHc-C-----CCCHHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            8754421              11   110 0     0011122223221                 2222333321    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       117 ----~~i~H~dlkp~Nil~~~~-~~~kL~Dfg~~~  146 (318)
T cd05582         117 ----LGIIYRDLKPENILLDEE-GHIKLTDFGLSK  146 (318)
T ss_pred             ----CCEecCCCCHHHeEECCC-CcEEEeeccCCc
Confidence                348999999999999874 689999998764

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.02  E-value=1.9e-05  Score=69.70  Aligned_cols=134  Identities=18%  Similarity=0.104  Sum_probs=75.5

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i  114 (267)
                      |..|....||++....    .+..+.+|+......    .......|..++..+..+...++++..+.+  .  +|+||+
T Consensus         3 lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   78 (316)
T cd05620           3 LGKGSFGKVLLAELKG----KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFL   78 (316)
T ss_pred             eeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCC
Confidence            5667778999998643    357888998754210    011112455555544445455666665532  2  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..          .    +.   ..    .. .. ......+..                 .+...++.+-+    
T Consensus        79 ~~g~L~~----------~----i~---~~----~~-~~-~~~~~~~~~-----------------qi~~~l~~lH~----  114 (316)
T cd05620          79 NGGDLMF----------H----IQ---DK----GR-FD-LYRATFYAA-----------------EIVCGLQFLHS----  114 (316)
T ss_pred             CCCcHHH----------H----HH---Hc----CC-CC-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            8865421          0    10   00    00 01 011111211                 12223333322    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       115 ----~~ivHrDlkp~Nil~~~~-~~~kl~Dfg~~~  144 (316)
T cd05620         115 ----KGIIYRDLKLDNVMLDRD-GHIKIADFGMCK  144 (316)
T ss_pred             ----CCeEecCCCHHHeEECCC-CCEEeCccCCCe
Confidence                359999999999999874 689999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=98.00  E-value=2.9e-05  Score=68.88  Aligned_cols=133  Identities=18%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      |..|....||++....    .+..+++|+.....    .......+|..+++.+..-.+ ++++..+.  +.  +|+||+
T Consensus         3 lG~G~~g~Vy~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~Ey~   77 (328)
T cd05593           3 LGKGTFGKVILVREKA----SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFL-TSLKYSFQTKDRLCFVMEYV   77 (328)
T ss_pred             eeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC-cceEEEEEcCCEEEEEEeCC
Confidence            5667788999997543    35788999875431    111112356666666644333 33444432  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..          .+       +...    . .. ......+..                 .+...+..|-+    
T Consensus        78 ~~g~L~~----------~l-------~~~~----~-l~-~~~~~~~~~-----------------qi~~aL~~LH~----  113 (328)
T cd05593          78 NGGELFF----------HL-------SRER----V-FS-EDRTRFYGA-----------------EIVSALDYLHS----  113 (328)
T ss_pred             CCCCHHH----------HH-------HhcC----C-CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8865521          00       0000    0 00 111222221                 12223333321    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       114 ----~~ivHrDikp~NIll~~~-~~~kL~DfG~~~  143 (328)
T cd05593         114 ----GKIVYRDLKLENLMLDKD-GHIKITDFGLCK  143 (328)
T ss_pred             ----CCeEecccCHHHeEECCC-CcEEEecCcCCc
Confidence                248999999999999874 689999999775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=97.99  E-value=1.9e-05  Score=69.66  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---c-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---V-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      |..|....||++....    .+..+.+|+......   . ......|..++..+..+...++++..+..+    +|+||+
T Consensus         3 lG~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~   78 (316)
T cd05592           3 LGKGSFGKVMLAELKG----TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYL   78 (316)
T ss_pred             eeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCC
Confidence            5677788999998643    356788897654211   0 001123444444444444445566554322    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..              .+..-+.  .      . ......|..+                 +...+..|-+    
T Consensus        79 ~gg~L~~--------------~~~~~~~--~------~-~~~~~~~~~q-----------------i~~al~~LH~----  114 (316)
T cd05592          79 NGGDLMF--------------HIQSSGR--F------D-EARARFYAAE-----------------IICGLQFLHK----  114 (316)
T ss_pred             CCCcHHH--------------HHHHcCC--C------C-HHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            9865531              0111010  0      0 0112222211                 2222333322    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       115 ----~~ivH~dlkp~Nill~~~-~~~kL~Dfg~a~  144 (316)
T cd05592         115 ----KGIIYRDLKLDNVLLDKD-GHIKIADFGMCK  144 (316)
T ss_pred             ----CCEEeCCCCHHHeEECCC-CCEEEccCcCCe
Confidence                358999999999999874 689999999775

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=97.99  E-value=2.6e-05  Score=68.06  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=77.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEEC-C---eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFG-D---GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~---~~v~e  112 (267)
                      ..+..|..|..+.+|++....    .+..+++|........... ...|..+++.+...++.+ +++.+. +   .+|++
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~-~~~~~~~~~~~~lv~e   96 (297)
T cd06656          22 TRFEKIGQGASGTVYTAIDIA----TGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVN-YLDSYLVGDELWVVME   96 (297)
T ss_pred             eeeeeeccCCCeEEEEEEECC----CCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEee-EEEEEecCCEEEEeec
Confidence            456667888889999997432    3578899977543211111 135666666654444433 444332 2   28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..       .   ....      . ...+..+..                 .+...+..|.+  
T Consensus        97 ~~~~~~L~~-------~~-------~---~~~~------~-~~~~~~~~~-----------------~l~~~L~~LH~--  133 (297)
T cd06656          97 YLAGGSLTD-------VV-------T---ETCM------D-EGQIAAVCR-----------------ECLQALDFLHS--  133 (297)
T ss_pred             ccCCCCHHH-------HH-------H---hCCC------C-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            999876532       00       0   0000      0 011111111                 12223333322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|+|||++. ++.+.++||+.+.
T Consensus       134 ------~~i~H~dL~p~Nili~~-~~~~~l~Dfg~~~  163 (297)
T cd06656         134 ------NQVIHRDIKSDNILLGM-DGSVKLTDFGFCA  163 (297)
T ss_pred             ------CCcccCCCCHHHEEECC-CCCEEECcCccce
Confidence                  24899999999999987 4689999998664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.99  E-value=3.7e-05  Score=69.45  Aligned_cols=137  Identities=17%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      .+..|..|....||++....    .+..+.+|+.....   ..... ..+|..+++.+... ..+++++.+.+.    +|
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp-~iv~~~~~~~~~~~~~lv   79 (377)
T cd05629           5 TVKVIGKGAFGEVRLVQKKD----TGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSP-WVVSLYYSFQDAQYLYLI   79 (377)
T ss_pred             EeEEEeecCCEEEEEEEECC----CCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCC-CcceEEEEEEcCCeeEEE
Confidence            45677778889999997543    35788898764321   11111 13577777665433 335566555432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+...  .     +  ......|..+                 +...++.|- 
T Consensus        80 ~E~~~gg~L~~--------------~l~~~~~--~-----~--~~~~~~~~~q-----------------l~~aL~~LH-  118 (377)
T cd05629          80 MEFLPGGDLMT--------------MLIKYDT--F-----S--EDVTRFYMAE-----------------CVLAIEAVH-  118 (377)
T ss_pred             EeCCCCCcHHH--------------HHHhcCC--C-----C--HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99998866531              1111000  0     0  1112222221                 122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       119 -------~~givHrDlkp~NIll~~~-~~~kl~DfGla~  149 (377)
T cd05629         119 -------KLGFIHRDIKPDNILIDRG-GHIKLSDFGLST  149 (377)
T ss_pred             -------hCCeeccCCCHHHEEECCC-CCEEEeeccccc
Confidence                   2359999999999999874 689999999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=97.99  E-value=1.8e-05  Score=69.82  Aligned_cols=134  Identities=17%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      |..|.-..||++....    .+..+.+|+.....   ....+ ...|..++..+..+...+++++.+.+.    +|+||+
T Consensus         3 lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   78 (318)
T cd05570           3 LGKGSFGKVLLAELKG----TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYV   78 (318)
T ss_pred             eeeCCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCC
Confidence            5566678999998643    35788899875321   11111 135677777776665566777765422    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..              .+.+-+  ..     +  ......+..                 .+...+..|.     
T Consensus        79 ~~~~L~~--------------~~~~~~--~l-----~--~~~~~~~~~-----------------qi~~~l~~LH-----  113 (318)
T cd05570          79 NGGDLMF--------------HIQRSG--RF-----D--EPRARFYAA-----------------EIVLGLQFLH-----  113 (318)
T ss_pred             CCCCHHH--------------HHHHcC--CC-----C--HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8865521              000000  00     0  111111211                 1222333332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       114 ---~~~ivH~dlkp~Nill~~~-~~~kl~Dfg~~~  144 (318)
T cd05570         114 ---ERGIIYRDLKLDNVLLDSE-GHIKIADFGMCK  144 (318)
T ss_pred             ---hCCeEccCCCHHHeEECCC-CcEEecccCCCe
Confidence               2348999999999999874 689999999764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=97.98  E-value=4e-05  Score=67.75  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=76.8

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----ccccChHHHHHHHHHHHhCCCCceEEEEE-CCe---eEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EVFFNRDDEIRTFECMSSQGQGPRLLGRF-GDG---RVE  111 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~~~---~v~  111 (267)
                      ..|..|....+|++..... ...+..+.+|+.....     ........|..+++.+..-++.+ ++..+ .++   +++
T Consensus         2 ~~lg~G~~g~V~~~~~~~~-~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~-~~~~~~~~~~~~lv~   79 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTG-ADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVD-LIYAFQTGGKLYLIL   79 (323)
T ss_pred             ceeeecCCeEEEEEEEccc-CCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhc-eeeEEecCCeEEEEE
Confidence            4566777889999975321 1135778888864321     11111136788888876545544 33333 222   789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+..              .+.   ....    ..  ......+..                 .+...+..|-+ 
T Consensus        80 e~~~~~~L~~--------------~~~---~~~~----~~--~~~~~~~~~-----------------qi~~~l~~lH~-  118 (323)
T cd05584          80 EYLSGGELFM--------------HLE---REGI----FM--EDTACFYLS-----------------EISLALEHLHQ-  118 (323)
T ss_pred             eCCCCchHHH--------------HHH---HcCC----CC--HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9998765421              111   1000    00  011111111                 12223333322 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++++ +.+.|+||..+.
T Consensus       119 -------~~ivH~dlkp~Nil~~~~-~~~kl~Dfg~~~  148 (323)
T cd05584         119 -------QGIIYRDLKPENILLDAQ-GHVKLTDFGLCK  148 (323)
T ss_pred             -------CCeecCCCCHHHeEECCC-CCEEEeeCcCCe
Confidence                   348999999999999874 689999998764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=97.98  E-value=4.7e-05  Score=67.57  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEEC-Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG-DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....   ..... ...|..++..+....+ +.+++.+. ++   +|
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-~~~~~~~~~~~~~~lv   79 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKN----TGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWI-TNLHYAFQDENNLYLV   79 (331)
T ss_pred             EEEEEEecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC-CceEEEEecCCeEEEE
Confidence            35667788889999998643    35789999865311   00000 1256666665543333 44555443 22   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.+.+. ..     +  ......|..+                 +...++.+- 
T Consensus        80 ~e~~~g~~L~~--------------~l~~~~~-~~-----~--~~~~~~~~~q-----------------i~~~l~~lH-  119 (331)
T cd05597          80 MDYYVGGDLLT--------------LLSKFED-RL-----P--EDMARFYLAE-----------------MVLAIDSVH-  119 (331)
T ss_pred             EecCCCCcHHH--------------HHHHhcC-CC-----C--HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99998866532              1111111 00     0  1112222221                 222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|
T Consensus       120 -------~~~ivH~dlkp~Nill~~~-~~~kl~Dfg~~  149 (331)
T cd05597         120 -------QLGYVHRDIKPDNVLLDKN-GHIRLADFGSC  149 (331)
T ss_pred             -------hCCeEECCCCHHHEEECCC-CCEEEEECCce
Confidence                   2348999999999999874 68999999876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=97.98  E-value=3.1e-05  Score=69.22  Aligned_cols=138  Identities=16%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccCh-HHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFNR-DDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      +..|..|-...||.+...+    ....+.+|+-.+..-   .-+.| ..|.+|+..+ ++-+-|.+|+.++.    +++|
T Consensus        82 lk~LG~GdiG~VyL~~l~~----t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~l-DHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   82 LKRLGCGDIGTVYLVELRG----TNCLFAMKVMDKESLASRKKLKRAQTEREILSLL-DHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHcCCCCceeEEEEEecC----CCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhc-CCCccchhhheeeccceeEEEE
Confidence            3456788899999998754    246778888655321   11112 3455565444 55678999999863    3899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||.+|..+..-        +         |+  +|..   -+-+...+|+..                .+.-.+++|   
T Consensus       157 eyCpGGdL~~L--------r---------qk--Qp~~---~fse~~aRFYaA----------------Evl~ALEYL---  195 (459)
T KOG0610|consen  157 EYCPGGDLHSL--------R---------QK--QPGK---RFSESAARFYAA----------------EVLLALEYL---  195 (459)
T ss_pred             ecCCCccHHHH--------H---------hh--CCCC---ccchhhHHHHHH----------------HHHHHHHHH---
Confidence            99999776531        1         11  1111   111223333321                111223333   


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           +-.+++-+||+|.|||+.++ |-++|.|||.+-
T Consensus       196 -----HmlGivYRDLKPENILvred-GHIMLsDFDLS~  227 (459)
T KOG0610|consen  196 -----HMLGIVYRDLKPENILVRED-GHIMLSDFDLSL  227 (459)
T ss_pred             -----HhhceeeccCCcceeEEecC-CcEEeeeccccc
Confidence                 23569999999999999985 679999999885

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=97.97  E-value=8.3e-05  Score=64.81  Aligned_cols=137  Identities=13%  Similarity=0.070  Sum_probs=77.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e  112 (267)
                      ..+..+..|..+.+|++....    .+..+.+|......... ....+|+.+++.+...++.+ +++.+.  .  .+|++
T Consensus        23 ~~~~~lg~g~~~~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~-~~~~~~~~~~~~lv~e   97 (296)
T cd06654          23 TRFEKIGQGASGTVYTAMDVA----TGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN-YLDSYLVGDELWVVME   97 (296)
T ss_pred             eeEEEecCCCCeEEEEEEECC----CCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEee-EEEEEEeCCEEEEeec
Confidence            345667888889999997432    35778888764332111 11136777777665444433 333332  2  28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..          +...      .. ...+..+..                 .+...+..+.   
T Consensus        98 ~~~~~~L~~-------~~----------~~~~------~~-~~~~~~i~~-----------------ql~~aL~~LH---  133 (296)
T cd06654          98 YLAGGSLTD-------VV----------TETC------MD-EGQIAAVCR-----------------ECLQALEFLH---  133 (296)
T ss_pred             ccCCCCHHH-------HH----------HhcC------CC-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            999866532       11          0000      01 011111111                 1222233332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       134 -----~~gi~H~dLkp~Nill~~~-~~~kl~dfg~~~  164 (296)
T cd06654         134 -----SNQVIHRDIKSDNILLGMD-GSVKLTDFGFCA  164 (296)
T ss_pred             -----HCCcccCCCCHHHEEEcCC-CCEEECccccch
Confidence                 1248999999999999874 689999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=97.97  E-value=5e-05  Score=65.77  Aligned_cols=139  Identities=16%  Similarity=0.027  Sum_probs=77.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-c--c-ccChHHHHHHHHHHHhCCCCceEEEEEC-C-e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-E--V-FFNRDDEIRTFECMSSQGQGPRLLGRFG-D-G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~--~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~-~--~v  110 (267)
                      .+..|..|....||++....    ++..+.+|...... .  . .....+|..+++.+....+.+ .+..+. + .  ++
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~-~~~~~~~~~~~~lv   78 (285)
T cd05631           4 HYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVS-LAYAYETKDALCLV   78 (285)
T ss_pred             EEEEEecCCCEEEEEEEEec----CCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEE-EEEEEccCCeEEEE
Confidence            45667888889999997543    35788899765321 1  1 011135777777775544433 333332 2 2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+...       ..          ....  .. .. ......+..                 .+...+..+- 
T Consensus        79 ~e~~~~g~L~~~-------~~----------~~~~--~~-~~-~~~~~~~~~-----------------qi~~~l~~lH-  119 (285)
T cd05631          79 LTIMNGGDLKFH-------IY----------NMGN--PG-FD-EQRAIFYAA-----------------ELCCGLEDLQ-  119 (285)
T ss_pred             EEecCCCcHHHH-------HH----------hhCC--CC-CC-HHHHHHHHH-----------------HHHHHHHHHH-
Confidence            999998665310       00          0000  00 00 011111211                 1122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++++ +.+.|+||..+.
T Consensus       120 -------~~~iiH~dikp~Nill~~~-~~~kl~Dfg~~~  150 (285)
T cd05631         120 -------RERIVYRDLKPENILLDDR-GHIRISDLGLAV  150 (285)
T ss_pred             -------hCCEEeCCCCHHHEEECCC-CCEEEeeCCCcE
Confidence                   2358999999999999874 679999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=97.97  E-value=1.6e-05  Score=70.82  Aligned_cols=138  Identities=15%  Similarity=0.147  Sum_probs=78.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v  110 (267)
                      -...|..|....||++....    .+..+.+|+.....    ........|..++..+....+. +++....  +  .+|
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~-~~~~~~~~~~~~~lv   79 (350)
T cd05573           5 VIKVIGRGAFGEVWLVRDKD----TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIV-KLYYSFQDEEHLYLV   79 (350)
T ss_pred             EEEEEEeCCcEEEEEEEECC----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCcc-chhhheecCCeEEEE
Confidence            35667778889999998643    35789999875321    1011113566777666543333 3333332  2  288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..              .+.+-+..       +  ......+..                 .+...+..|..
T Consensus        80 ~e~~~~~~L~~--------------~l~~~~~l-------~--~~~~~~i~~-----------------qi~~aL~~LH~  119 (350)
T cd05573          80 MEYMPGGDLMN--------------LLIRKDVF-------P--EETARFYIA-----------------ELVLALDSVHK  119 (350)
T ss_pred             EcCCCCCCHHH--------------HHHHcCCC-------C--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865431              11110000       0  011111221                 12222333322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||+.+..
T Consensus       120 --------~giiH~Dlkp~NIll~~~-~~~kL~Dfg~~~~  150 (350)
T cd05573         120 --------LGFIHRDIKPDNILIDAD-GHIKLADFGLCKK  150 (350)
T ss_pred             --------CCeeccCCCHHHeEECCC-CCEEeecCCCCcc
Confidence                    459999999999999874 6899999998864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=97.97  E-value=5.1e-05  Score=67.02  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      +..|..|....||++....    .+..+.+|+.......    ......|..++..+..+...+.++..+.  +.  +|+
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKG----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             EEEEeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            5567777788999997543    3578889987543210    0001234455544444444455555543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..          .+    .+...  .      . ......+..                 .+...+..|-  
T Consensus        81 E~~~~g~L~~----------~~----~~~~~--~------~-~~~~~~~~~-----------------qi~~aL~~LH--  118 (323)
T cd05616          81 EYVNGGDLMY----------QI----QQVGR--F------K-EPHAVFYAA-----------------EIAIGLFFLH--  118 (323)
T ss_pred             cCCCCCCHHH----------HH----HHcCC--C------C-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9998865421          01    00000  0      0 011111211                 1222233332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.|||++++ +.+.|+||..|.
T Consensus       119 ------~~~ivHrDlkp~Nill~~~-~~~kL~DfG~~~  149 (323)
T cd05616         119 ------SKGIIYRDLKLDNVMLDSE-GHIKIADFGMCK  149 (323)
T ss_pred             ------HCCEEecCCCHHHeEECCC-CcEEEccCCCce
Confidence                  1259999999999999874 689999999774

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=97.96  E-value=7.8e-05  Score=63.06  Aligned_cols=146  Identities=11%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEE--CC----eeE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRF--GD----GRV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~--~~----~~v  110 (267)
                      ...+..|....+|++....    .+..+++|......  ..... ...|+++++.+...++. +++...  .+    .++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKS----DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIV-RYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             eeeeccCCCeEEEEeeecC----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccc-eeeeeeecCCCCEEEEE
Confidence            3556777788999997543    35678888764321  11111 13566777666554443 333322  22    167


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++...              +.+....   ... .. ......+..                 .+...+..+-.
T Consensus        80 ~e~~~~~~L~~~--------------l~~~~~~---~~~-l~-~~~~~~~~~-----------------~i~~~l~~lH~  123 (265)
T cd08217          80 MEYCEGGDLAQL--------------IQKCKKE---RKY-IE-EEFIWRILT-----------------QLLLALYECHN  123 (265)
T ss_pred             ehhccCCCHHHH--------------HHHHhhc---ccC-CC-HHHHHHHHH-----------------HHHHHHHHHhc
Confidence            899888765321              1111000   000 01 111111211                 12222222211


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         .......++|+|++|+||++++ ++.+.++||+.+..
T Consensus       124 ---~~~~~~~i~h~dl~p~nili~~-~~~~kl~d~g~~~~  159 (265)
T cd08217         124 ---RSDPGNTVLHRDLKPANIFLDA-NNNVKLGDFGLAKI  159 (265)
T ss_pred             ---CccccCcceecCCCHHHEEEec-CCCEEEeccccccc
Confidence               0122677999999999999997 47899999997764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=97.96  E-value=6.2e-05  Score=64.23  Aligned_cols=137  Identities=15%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      .+.+..|..+.+|++....     ...+.+|+..........-.+|.++++.+..-++ .++++...+.   ++++|++|
T Consensus        11 ~~~lg~g~~~~v~~~~~~~-----~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i-~~~~~~~~~~~~~lv~e~~~~   84 (262)
T cd05071          11 EVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-VQLYAVVSEEPIYIVTEYMSK   84 (262)
T ss_pred             eeecCCCCCCcEEEEEecC-----CceEEEEecccCccCHHHHHHHHHHHHhCCCCCc-ceEEEEECCCCcEEEEEcCCC
Confidence            4456777778999997532     3568889876432111111468888887764443 3344444322   88999988


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ...          ...  .. .. ..+....+..                 .+...+..+.       
T Consensus        85 ~~L~~-------~~~----------~~~--~~-~~-~~~~~~~~~~-----------------~l~~aL~~lH-------  119 (262)
T cd05071          85 GSLLD-------FLK----------GEM--GK-YL-RLPQLVDMAA-----------------QIASGMAYVE-------  119 (262)
T ss_pred             CcHHH-------HHh----------hcc--cc-CC-CHHHHHHHHH-----------------HHHHHHHHHH-------
Confidence            76532       110          000  00 00 1112222221                 1222223332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ...++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       120 -~~~i~H~dl~p~Nill~~~-~~~~L~dfg~~~  150 (262)
T cd05071         120 -RMNYVHRDLRAANILVGEN-LVCKVADFGLAR  150 (262)
T ss_pred             -HCCccccccCcccEEEcCC-CcEEeccCCcee
Confidence             2348999999999999874 678999998875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=97.95  E-value=5.5e-05  Score=68.34  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=77.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      .+..|..|....||++....    .+..+++|+.....    ........|..+++.+....+ +++++.+.+ .   +|
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~i-v~~~~~~~~~~~~~lv  121 (370)
T cd05596          47 VIKVIGRGAFGEVQLVRHKS----SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWI-VQLHYAFQDDKYLYMV  121 (370)
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCc-ceEEEEEecCCEEEEE
Confidence            45567778888999997543    35788999864321    000011356777776654444 344444432 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       ..          +....     +.  .....+..                 .+...++.|-+
T Consensus       122 ~Ey~~gg~L~~-------~l----------~~~~l-----~~--~~~~~~~~-----------------qi~~aL~~LH~  160 (370)
T cd05596         122 MEYMPGGDLVN-------LM----------SNYDI-----PE--KWARFYTA-----------------EVVLALDAIHS  160 (370)
T ss_pred             EcCCCCCcHHH-------HH----------HhcCC-----CH--HHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865532       11          11111     10  11111111                 12223333322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       161 --------~~ivHrDLkp~NILl~~~-~~~kL~DfG~~~  190 (370)
T cd05596         161 --------MGFIHRDVKPDNMLLDKS-GHLKLADFGTCM  190 (370)
T ss_pred             --------CCeeccCCCHHHEEEcCC-CCEEEEecccee
Confidence                    348999999999999874 789999998764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=97.95  E-value=5.7e-05  Score=66.77  Aligned_cols=134  Identities=17%  Similarity=0.108  Sum_probs=74.7

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---c-cccChHHHHHHHHHHHhCCCCceEEEEEC-C-e--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---E-VFFNRDDEIRTFECMSSQGQGPRLLGRFG-D-G--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~-~--~v~e~  113 (267)
                      .|..|....||++....    .+..+.+|+.....   . ......+|..+++.+..-.+. ++++.+. + .  +|+||
T Consensus         2 ~lG~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~-~~~~~~~~~~~~~lv~e~   76 (323)
T cd05571           2 LLGKGTFGKVILVREKA----TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLT-ALKYSFQTHDRLCFVMEY   76 (323)
T ss_pred             eeeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCC-CEEEEEEcCCEEEEEEeC
Confidence            35667788999997543    35788999875321   0 111113566667666543433 3443332 2 2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..          .    +.   ... +    . ....+..+..                 .+...++.+-    
T Consensus        77 ~~~~~L~~----------~----l~---~~~-~----~-~~~~~~~~~~-----------------qi~~~L~~lH----  112 (323)
T cd05571          77 ANGGELFF----------H----LS---RER-V----F-SEDRARFYGA-----------------EIVSALGYLH----  112 (323)
T ss_pred             CCCCcHHH----------H----HH---HcC-C----C-CHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            98865421          0    10   000 0    0 0111221211                 1222333332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       113 ----~~~ivHrDlkp~NIll~~~-~~~kl~DfG~a~  143 (323)
T cd05571         113 ----SCDVVYRDLKLENLMLDKD-GHIKITDFGLCK  143 (323)
T ss_pred             ----hCCeEeCCCCHHHEEECCC-CCEEEeeCCCCc
Confidence                2358999999999999874 679999999775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.94  E-value=0.00013  Score=63.10  Aligned_cols=142  Identities=13%  Similarity=0.104  Sum_probs=78.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--C-------ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D-------GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~-------~~  109 (267)
                      ....+..|..+.+|++....    ++..+.+|...........-.+|+.+++.+.++.-.++++..+.  +       .+
T Consensus        26 ~~~~l~~g~~~~vy~~~~~~----~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~l  101 (291)
T cd06639          26 IIETIGKGTYGKVYKVTNKK----DGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWL  101 (291)
T ss_pred             EEEEeecCCCeEEEEEEECC----CCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEE
Confidence            44566777788999997542    35788888875432111112367777777755543445554431  1       17


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|++|.++..           +.+   .+...   ... .. ...+..+..                 .+...++.+-
T Consensus       102 v~ey~~~~sL~~-----------~~~---~~~~~---~~~-~~-~~~~~~~~~-----------------qi~~al~~lH  145 (291)
T cd06639         102 VLELCNGGSVTE-----------LVK---GLLIC---GQR-LD-EAMISYILY-----------------GALLGLQHLH  145 (291)
T ss_pred             EEEECCCCcHHH-----------HHH---Hhhhc---CCC-CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999876542           100   00000   000 00 111111111                 1122222332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|+||+++.+ +.+.|+||..+.
T Consensus       146 --------~~~ivH~dlkp~nili~~~-~~~kl~dfg~~~  176 (291)
T cd06639         146 --------NNRIIHRDVKGNNILLTTE-GGVKLVDFGVSA  176 (291)
T ss_pred             --------hCCeeccCCCHHHEEEcCC-CCEEEeecccch
Confidence                    2358999999999999874 679999998764

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=97.94  E-value=3.5e-05  Score=68.37  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      .|..|....||++....    .+..+.+|+.....   ..... ...|..++..+.++...++++..+.  +.  +|+||
T Consensus         2 ~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~   77 (329)
T cd05618           2 VIGRGSYAKVLLVRLKK----TERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEY   77 (329)
T ss_pred             eeeeCCCeEEEEEEECC----CCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeC
Confidence            35667789999998643    35788888875421   11111 1356666665555544455665543  22  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..              .+.+-+.  .     +  ......+..                 .+...+..+.+   
T Consensus        78 ~~~~~L~~--------------~~~~~~~--l-----~--~~~~~~i~~-----------------qi~~~l~~lH~---  114 (329)
T cd05618          78 VNGGDLMF--------------HMQRQRK--L-----P--EEHARFYSA-----------------EISLALNYLHE---  114 (329)
T ss_pred             CCCCCHHH--------------HHHHcCC--C-----C--HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            99865521              0110000  0     0  011111221                 12223333332   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       115 -----~~ivH~Dikp~Nili~~~-~~~kL~DfG~~~  144 (329)
T cd05618         115 -----RGIIYRDLKLDNVLLDSE-GHIKLTDYGMCK  144 (329)
T ss_pred             -----CCeeeCCCCHHHEEECCC-CCEEEeeCCccc
Confidence                 248999999999999874 689999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=97.94  E-value=5.9e-05  Score=64.29  Aligned_cols=137  Identities=20%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEeecC
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFIHA  116 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i~G  116 (267)
                      ..+..|....+|++....    .+..+++|+...+.....+..+|+++++.+...++.+ +++... ++   ++++|++|
T Consensus        12 ~~ig~g~~~~v~~~~~~~----~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~lv~e~~~~   86 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ-LLGVCTREPPFYIITEFMTY   86 (263)
T ss_pred             eecCCcccceEEEEEEec----CCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhh-eEEEEcCCCCcEEEEEeCCC
Confidence            445777778999987543    3578889987644322112246888888775544443 344432 22   78999987


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..              .+..-+.     .. .. ...+..+..                 .+.+.+..|.       
T Consensus        87 ~~L~~--------------~~~~~~~-----~~-l~-~~~~~~~~~-----------------ql~~~l~~lH-------  121 (263)
T cd05052          87 GNLLD--------------YLRECNR-----QE-VN-AVVLLYMAT-----------------QISSAMEYLE-------  121 (263)
T ss_pred             CcHHH--------------HHHhCCC-----CC-CC-HHHHHHHHH-----------------HHHHHHHHHH-------
Confidence            66542              0111000     00 00 011111111                 1222223332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       122 -~~~i~H~dlkp~nil~~~~-~~~kl~df~~~~  152 (263)
T cd05052         122 -KKNFIHRDLAARNCLVGEN-HLVKVADFGLSR  152 (263)
T ss_pred             -hCCEeecccCcceEEEcCC-CcEEeCCCcccc
Confidence             2348999999999999874 679999999764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=97.93  E-value=6.2e-05  Score=68.07  Aligned_cols=136  Identities=13%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--c--cccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--E--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      .+..|..|....||++....    .+..+.+|+.....  .  .......|..+++.+....+ .+++..+.+ .   +|
T Consensus        47 ~~~~lG~G~fg~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~i-v~~~~~~~~~~~~~lv  121 (370)
T cd05621          47 VVKVIGRGAFGEVQLVRHKS----SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV-VQLFCAFQDDKYLYMV  121 (370)
T ss_pred             EEEEEEecCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCE-eeEEEEEEcCCEEEEE
Confidence            45667888889999998643    35788888864311  0  00001246666655543333 334444332 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       ..       .. +  ..     +.  .....+..                 .+...++.+- 
T Consensus       122 ~Ey~~gg~L~~-------~l-------~~-~--~~-----~~--~~~~~~~~-----------------qil~aL~~LH-  159 (370)
T cd05621         122 MEYMPGGDLVN-------LM-------SN-Y--DV-----PE--KWAKFYTA-----------------EVVLALDAIH-  159 (370)
T ss_pred             EcCCCCCcHHH-------HH-------Hh-c--CC-----CH--HHHHHHHH-----------------HHHHHHHHHH-
Confidence            99999866632       11       00 1  11     00  11111211                 1222233332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       160 -------~~~IvHrDLKp~NILl~~~-~~~kL~DFG~a~  190 (370)
T cd05621         160 -------SMGLIHRDVKPDNMLLDKH-GHLKLADFGTCM  190 (370)
T ss_pred             -------HCCeEecCCCHHHEEECCC-CCEEEEecccce
Confidence                   2359999999999999874 789999998775

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=97.93  E-value=5.8e-05  Score=63.13  Aligned_cols=138  Identities=15%  Similarity=0.164  Sum_probs=79.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      ...+..|-...+|++....    ++..+++|....... ...+..+|++.++.+... -.++++..+.  +.  ++++|+
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~-~i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKR----TGKEVAIKVIKLESKEKKEKIINEIQILKKCKHP-NIVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             eeeeccCCceEEEEEEECC----CCcEEEEEEecccchhHHHHHHHHHHHHHhCCCC-CEeEEEEEEecCCeEEEEEecC
Confidence            4567777788999998643    357899998765432 112224677777777632 3344555442  22  789999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .+ +.  .    ... ...+..+..                 .+...+..+.     
T Consensus        80 ~~~~L~~-------~~-------~~-~~--~----~~~-~~~~~~i~~-----------------~i~~~l~~lh-----  115 (253)
T cd05122          80 SGGSLKD-------LL-------KS-TN--Q----TLT-ESQIAYVCK-----------------ELLKGLEYLH-----  115 (253)
T ss_pred             CCCcHHH-------HH-------hh-cC--C----CCC-HHHHHHHHH-----------------HHHHHHHHhh-----
Confidence            8876542       11       00 00  0    000 111111111                 1112222222     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         ...++|+|++|.||++++ ++.+.|+||+.+..
T Consensus       116 ---~~~i~h~dl~p~ni~i~~-~~~~~l~d~~~~~~  147 (253)
T cd05122         116 ---SNGIIHRDIKAANILLTS-DGEVKLIDFGLSAQ  147 (253)
T ss_pred             ---cCCEecCCCCHHHEEEcc-CCeEEEeecccccc
Confidence               145899999999999997 46899999998754

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=97.93  E-value=4.8e-05  Score=65.78  Aligned_cols=140  Identities=11%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cc-cChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VF-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      ...|..|..+.+|++..... ..++..+.+|.......    .. .....|.+++..+..+...++++..+..+    +|
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   83 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGG-HDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLI   83 (288)
T ss_pred             EEEeccCCCceEEEEEEecc-ccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEE
Confidence            45677888889999874321 11356788887643211    11 11246888888887665445555444322    78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++...          +       +..    .. .. ...+..|..+                 +.+.+..+. 
T Consensus        84 ~e~~~~~~L~~~----------~-------~~~----~~-~~-~~~~~~~~~q-----------------l~~~l~~lH-  122 (288)
T cd05583          84 LDYVNGGELFTH----------L-------YQR----EH-FT-ESEVRVYIAE-----------------IVLALDHLH-  122 (288)
T ss_pred             EecCCCCcHHHH----------H-------hhc----CC-cC-HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            999987654210          0       000    00 00 1112222221                 222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       123 -------~~~~~H~dl~p~nil~~~~-~~~~l~dfg~~~  153 (288)
T cd05583         123 -------QLGIIYRDIKLENILLDSE-GHVVLTDFGLSK  153 (288)
T ss_pred             -------HCCeeccCCCHHHeEECCC-CCEEEEECcccc
Confidence                   2348999999999999874 679999998654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=97.92  E-value=3.3e-05  Score=68.16  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~  113 (267)
                      .|..|....||++....    .+..+.+|+.....    ........|..++..+..+...+++++.+.+  .  +|+||
T Consensus         2 ~lG~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey   77 (316)
T cd05619           2 MLGKGSFGKVFLAELKG----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEY   77 (316)
T ss_pred             eeeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeC
Confidence            35667778999998643    35788899765421    1111113466666555455545556665532  2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+.+-+..        . ......+..                 .+...+..|-+   
T Consensus        78 ~~~g~L~~--------------~l~~~~~~--------~-~~~~~~~~~-----------------qi~~al~~LH~---  114 (316)
T cd05619          78 LNGGDLMF--------------HIQSCHKF--------D-LPRATFYAA-----------------EIICGLQFLHS---  114 (316)
T ss_pred             CCCCcHHH--------------HHHHcCCC--------C-HHHHHHHHH-----------------HHHHHHHHHHh---
Confidence            99866531              11110110        0 011111211                 12222333322   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       115 -----~~ivHrdikp~Nil~~~~-~~~kl~Dfg~~~  144 (316)
T cd05619         115 -----KGIVYRDLKLDNILLDTD-GHIKIADFGMCK  144 (316)
T ss_pred             -----CCeEeCCCCHHHEEECCC-CCEEEccCCcce
Confidence                 258999999999999874 679999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=97.92  E-value=7.4e-05  Score=66.06  Aligned_cols=30  Identities=23%  Similarity=0.233  Sum_probs=26.0

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       115 ~~ivHrDikp~NIll~~~-~~~kL~Dfg~~~  144 (325)
T cd05594         115 KNVVYRDLKLENLMLDKD-GHIKITDFGLCK  144 (325)
T ss_pred             CCEEecCCCCCeEEECCC-CCEEEecCCCCe
Confidence            359999999999999874 689999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=97.92  E-value=3.9e-05  Score=68.03  Aligned_cols=137  Identities=12%  Similarity=0.051  Sum_probs=79.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -...|..|....||++....    .+..+.+|+.....    ...-...+|..+++.+..-++ .+++..+.  +.  ++
T Consensus        22 ~~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         22 MGETLGTGSFGRVRIAKHKG----TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFI-VNMMCSFQDENRVYFL   96 (329)
T ss_pred             EEEEEEecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC-CcEEEEEEcCCEEEEE
Confidence            45667778888999998643    35788899875321    111111367777777754333 34555443  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+   .    ...+  ......+..                 .+...+..|.+
T Consensus        97 ~e~~~~~~L~~--------------~l~~---~----~~~~--~~~~~~~~~-----------------qi~~aL~~LH~  136 (329)
T PTZ00263         97 LEFVVGGELFT--------------HLRK---A----GRFP--NDVAKFYHA-----------------ELVLAFEYLHS  136 (329)
T ss_pred             EcCCCCChHHH--------------HHHH---c----CCCC--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865531              1111   0    0001  011111211                 12223333332


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       137 --------~~ivH~dlkp~NIll~~~-~~~kl~Dfg~~~  166 (329)
T PTZ00263        137 --------KDIIYRDLKPENLLLDNK-GHVKVTDFGFAK  166 (329)
T ss_pred             --------CCeeecCCCHHHEEECCC-CCEEEeeccCce
Confidence                    248999999999999874 689999999875

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=97.91  E-value=6e-05  Score=66.27  Aligned_cols=133  Identities=17%  Similarity=0.094  Sum_probs=73.3

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ..|..+.||++....    .+..+.+|+.....   .. ......|..+++.+...++.+ ++..+.  +.  +|++|++
T Consensus         2 g~G~~g~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e~~~   76 (312)
T cd05585           2 GKGSFGKVMQVRKRD----TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVP-LKFSFQSPEKLYLVLAFIN   76 (312)
T ss_pred             CcCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEec-eeeEEecCCeEEEEEcCCC
Confidence            456678999997543    35678888764321   11 111135777777775444444 333332  22  8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+..              .+.+   .    .. .. ......+..                 .+...+..+-+     
T Consensus        77 ~g~L~~--------------~l~~---~----~~-~~-~~~~~~~~~-----------------qi~~~l~~lH~-----  111 (312)
T cd05585          77 GGELFH--------------HLQR---E----GR-FD-LSRARFYTA-----------------ELLCALENLHK-----  111 (312)
T ss_pred             CCcHHH--------------HHHh---c----CC-CC-HHHHHHHHH-----------------HHHHHHHHHHh-----
Confidence            865531              0110   0    00 00 011111211                 12223333322     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       112 ---~~i~HrDlkp~Nili~~~-~~~kl~Dfg~~~~  142 (312)
T cd05585         112 ---FNVIYRDLKPENILLDYQ-GHIALCDFGLCKL  142 (312)
T ss_pred             ---CCeEeCCCCHHHeEECCC-CcEEEEECccccc
Confidence               348999999999999874 6899999997753

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=97.90  E-value=6.2e-05  Score=65.01  Aligned_cols=136  Identities=13%  Similarity=0.027  Sum_probs=73.5

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i~  115 (267)
                      ..|..+.||++....    .+..+.+|.......    .+.....|..+++.+....+ .++...+. +.   ++++|++
T Consensus         2 g~G~~g~Vy~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i-~~~~~~~~~~~~~~lv~e~~~   76 (280)
T cd05608           2 GKGGFGEVSACQMRA----TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFI-VSLAYAFQTKTDLCLVMTIMN   76 (280)
T ss_pred             CCCCceeEEEEEEcc----CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcE-eeeeEEEcCCCeEEEEEeCCC
Confidence            456678999997543    357888887643211    11111357777777744333 33444332 22   8899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...       ..       ....  . ... .. ......+..                 .+...++.+-      
T Consensus        77 ~g~L~~~-------~~-------~~~~--~-~~~-l~-~~~~~~~~~-----------------qi~~~l~~lH------  114 (280)
T cd05608          77 GGDLRYH-------IY-------NVDE--E-NPG-FP-EPRACFYTA-----------------QIISGLEHLH------  114 (280)
T ss_pred             CCCHHHH-------HH-------hccc--c-CCC-CC-HHHHHHHHH-----------------HHHHHHHHHH------
Confidence            8766421       00       0000  0 000 00 111111221                 1222233332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||++++ ++.+.|+||..+.
T Consensus       115 --~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~  145 (280)
T cd05608         115 --QRRIIYRDLKPENVLLDN-DGNVRISDLGLAV  145 (280)
T ss_pred             --HCCcccCCCCHHHEEECC-CCCEEEeeCccce
Confidence              135899999999999987 4679999998774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=1.4e-05  Score=70.03  Aligned_cols=90  Identities=23%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhCCC-CceEEEEECCeeEEEeecCCCCCcc-cCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 024452           83 DDEIRTFECMSSQGQ-GPRLLGRFGDGRVEEFIHARTLSAA-DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKW  160 (267)
Q Consensus        83 ~~E~~~~~~l~~~gl-~P~v~~~~~~~~v~e~i~G~~l~~~-~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~  160 (267)
                      .+|++.++.|.++|+ +|+++.+.....||+.|+|-++..- .+.++                       +.++..+   
T Consensus       158 ~kEfafmkaL~e~gfpVPkpiD~~RH~Vvmelv~g~Pl~~v~~v~d~-----------------------~~ly~~l---  211 (465)
T KOG2268|consen  158 TKEFAFMKALYERGFPVPKPIDHNRHCVVMELVDGYPLRQVRHVEDP-----------------------PTLYDDL---  211 (465)
T ss_pred             HHHHHHHHHHHHcCCCCCCcccccceeeHHHhhcccceeeeeecCCh-----------------------HHHHHHH---
Confidence            479999999999997 5999999988899999999887641 12221                       2222211   


Q ss_pred             HHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          161 VSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                                           ...+-+|.        ..+++||||+--|||+.++ +.+++|||--+
T Consensus       212 ---------------------m~~Iv~la--------~~GlIHgDFNEFNimv~dd-~~i~vIDFPQm  249 (465)
T KOG2268|consen  212 ---------------------MGLIVRLA--------NHGLIHGDFNEFNIMVKDD-DKIVVIDFPQM  249 (465)
T ss_pred             ---------------------HHHHHHHH--------HcCceecccchheeEEecC-CCEEEeechHh
Confidence                                 11112222        2359999999999999974 67999999755

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=97.89  E-value=0.00017  Score=62.44  Aligned_cols=142  Identities=13%  Similarity=0.062  Sum_probs=80.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEE--C-C---ee
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRF--G-D---GR  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~-~---~~  109 (267)
                      -.+..+..|....+|++....    .+..+++|....... . .....+|+++++.+...++.+ +++.+  . .   .+
T Consensus         4 ~~~~~lg~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~-~~~~~~~~~~~~~~l   78 (287)
T cd06621           4 VELSRLGEGAGGSVTKCRLKN----TGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVK-YYGAFLDESSSSIGI   78 (287)
T ss_pred             EEEEEeccCCceEEEEEEECC----CCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeee-eeeEEEccCCCeEEE
Confidence            356778888888999998643    357888888754321 1 111246888887776545444 33332  2 2   27


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++||++|.++..       .   +.+...  +...      .. ...+..+..                 .+...+..+.
T Consensus        79 v~e~~~~~~L~~-------~---l~~~~~--~~~~------l~-~~~~~~i~~-----------------~i~~~L~~lH  122 (287)
T cd06621          79 AMEYCEGGSLDS-------I---YKKVKK--RGGR------IG-EKVLGKIAE-----------------SVLKGLSYLH  122 (287)
T ss_pred             EEEecCCCCHHH-------H---HHHHHh--cCCC------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999876532       1   111110  0000      00 011111111                 1222223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++++||+++++ +.+.++||..+.
T Consensus       123 --------~~~i~H~dl~~~nil~~~~-~~~~l~dfg~~~  153 (287)
T cd06621         123 --------SRKIIHRDIKPSNILLTRK-GQVKLCDFGVSG  153 (287)
T ss_pred             --------HCCcccCCCCHHHEEEecC-CeEEEeeccccc
Confidence                    2358999999999999874 679999998765

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=97.89  E-value=8.6e-05  Score=64.83  Aligned_cols=137  Identities=15%  Similarity=0.116  Sum_probs=77.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      .+..|..|....||++....    .+..+++|+......  ......+|+.+++.+...++. +++....  +.  +|++
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           9 KLEKLGEGSYATVYKGKSKV----NGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIV-LLHDIIHTKETLTLVFE   83 (303)
T ss_pred             EeeeEEecCCEEEEEEEECC----CCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcC-eEEEEEecCCeEEEEEE
Confidence            46677888888999998643    357889998653321  111224688888877654443 3444433  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.-.           ..    +.+ |....       ..+.+..+..+                 +...++.+-+  
T Consensus        84 ~~~~~l~-----------~~----~~~-~~~~~-------~~~~~~~~~~q-----------------i~~al~~lH~--  121 (303)
T cd07869          84 YVHTDLC-----------QY----MDK-HPGGL-------HPENVKLFLFQ-----------------LLRGLSYIHQ--  121 (303)
T ss_pred             CCCcCHH-----------HH----HHh-CCCCC-------CHHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9875211           00    100 11000       01112222211                 2222233322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       122 ------~~ivH~dlkp~Nill~~~-~~~kl~Dfg~~~  151 (303)
T cd07869         122 ------RYILHRDLKPQNLLISDT-GELKLADFGLAR  151 (303)
T ss_pred             ------CCeecCCCCHHHEEECCC-CCEEECCCCcce
Confidence                  248999999999999874 679999998763

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=97.89  E-value=0.00012  Score=63.39  Aligned_cols=137  Identities=15%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ...|..|....+|++....    .+..+++|......   ....+ ..+|+++++.+. +.-.++++....++    +++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKG----SGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIR-HPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             EEEeecCCCeEEEEEEEcC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCC-CCCccceeeEEEcCCeEEEEE
Confidence            4566777788999998643    35788898764321   01111 135777777776 33334555554322    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..              .+.+-..        .. ......+..                 .+.+.+..+-  
T Consensus        81 e~~~~~~L~~--------------~~~~~~~--------l~-~~~~~~~~~-----------------qil~~l~~lH--  118 (290)
T cd05580          81 EYVPGGELFS--------------HLRKSGR--------FP-EPVARFYAA-----------------QVVLALEYLH--  118 (290)
T ss_pred             ecCCCCCHHH--------------HHHHcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9998865431              0111000        00 011111211                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ...++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       119 ------~~~i~H~dl~p~nili~~~-~~~kl~dfg~~~~  150 (290)
T cd05580         119 ------SLDIVYRDLKPENLLLDSD-GYIKITDFGFAKR  150 (290)
T ss_pred             ------HCCEecCCCCHHHEEECCC-CCEEEeeCCCccc
Confidence                  1358999999999999874 6799999998754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=97.88  E-value=7.7e-05  Score=65.92  Aligned_cols=136  Identities=16%  Similarity=0.092  Sum_probs=76.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhC--CCCceEEEEECC--e--e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQ--GQGPRLLGRFGD--G--R  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~--gl~P~v~~~~~~--~--~  109 (267)
                      +..|..|....||++....    .+..+++|+.....   .... ....|..++..++..  .-..++++.+.+  .  +
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l   79 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKK----TGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF   79 (324)
T ss_pred             EEEEeecCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence            4567778888999997543    35789999875321   1111 113455555555432  223455555432  2  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..                 .++....      . ......|..+                 +...+..+-
T Consensus        80 v~E~~~~~~L~~-----------------~~~~~~l------~-~~~~~~~~~q-----------------i~~al~~lH  118 (324)
T cd05589          80 VMEYAAGGDLMM-----------------HIHTDVF------S-EPRAVFYAAC-----------------VVLGLQYLH  118 (324)
T ss_pred             EEcCCCCCcHHH-----------------HhhcCCC------C-HHHHHHHHHH-----------------HHHHHHHHH
Confidence            899998865421                 0111000      0 0111122211                 222223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.||+++++ +.+.|+||..|.
T Consensus       119 ~--------~~ivHrdlkp~Nill~~~-~~~kL~Dfg~~~  149 (324)
T cd05589         119 E--------NKIVYRDLKLDNLLLDTE-GFVKIADFGLCK  149 (324)
T ss_pred             h--------CCeEecCCCHHHeEECCC-CcEEeCcccCCc
Confidence            1        348999999999999874 689999999765

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=97.88  E-value=4.3e-05  Score=67.39  Aligned_cols=29  Identities=17%  Similarity=0.175  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       116 ~ivH~Dlkp~NIll~~~-~~~kl~Dfg~~~  144 (321)
T cd05603         116 NIIYRDLKPENILLDSQ-GHVVLTDFGLCK  144 (321)
T ss_pred             CeEeccCCHHHeEECCC-CCEEEccCCCCc
Confidence            48999999999999874 689999999765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.88  E-value=0.00012  Score=64.90  Aligned_cols=139  Identities=16%  Similarity=0.136  Sum_probs=79.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG-DG---RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~  111 (267)
                      -.+..|..|....||++....    .+..+.+|+...... .... -.+|+++++.+..-++. ++++... ++   +++
T Consensus         8 ~~~~~lg~G~~g~V~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~   82 (331)
T cd06649           8 ERISELGAGNGGVVTKVQHKP----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIV-GFYGAFYSDGEISICM   82 (331)
T ss_pred             eEEEeecCCCCEEEEEEEECC----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCC-eEEEEEEECCEEEEEe
Confidence            356777888888999998643    356777887654321 1111 14688888777544443 3444432 22   889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ..       .+   ..    ..+  ...+..+..                 .+...+..+-  
T Consensus        83 e~~~~~~L~~-------~l-------~~---~~----~~~--~~~~~~~~~-----------------~i~~~l~~lH--  120 (331)
T cd06649          83 EHMDGGSLDQ-------VL-------KE---AK----RIP--EEILGKVSI-----------------AVLRGLAYLR--  120 (331)
T ss_pred             ecCCCCcHHH-------HH-------HH---cC----CCC--HHHHHHHHH-----------------HHHHHHHHHh--
Confidence            9999866532       11       00   00    000  011111111                 1122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ....++|+|++|.|||++++ +.+.|+||..+.
T Consensus       121 -----~~~~ivH~dlkp~Nil~~~~-~~~kl~Dfg~~~  152 (331)
T cd06649         121 -----EKHQIMHRDVKPSNILVNSR-GEIKLCDFGVSG  152 (331)
T ss_pred             -----hcCCEEcCCCChhhEEEcCC-CcEEEccCcccc
Confidence                 11248999999999999874 679999998764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.87  E-value=9.1e-05  Score=62.85  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=77.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ...|..|....+|++....     ...+++|..........+..+|+.+++.+.... .++++....+    .++++|++
T Consensus        11 ~~~ig~g~~~~v~~~~~~~-----~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNG-----TTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDK-LVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             eeeeccCcceEEEEEEEcC-----CceEEEEEecCCccCHHHHHHHHHHHhhCCCCC-EeeeeeeeecCCceEEEEeccC
Confidence            3556777788999987532     367888887654321112246777777776433 3445554432    28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...       .          +...  .. ... ......+..                 .+...+..+.      
T Consensus        85 ~~~L~~~-------i----------~~~~--~~-~~~-~~~~~~~~~-----------------~i~~al~~lh------  120 (261)
T cd05034          85 KGSLLDF-------L----------KSGE--GK-KLR-LPQLVDMAA-----------------QIAEGMAYLE------  120 (261)
T ss_pred             CCCHHHH-------H----------hccc--cC-CCC-HHHHHHHHH-----------------HHHHHHHHHH------
Confidence            8765321       1          1100  00 011 111222221                 1222233332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++++ +.+.++||+.+.
T Consensus       121 --~~~i~h~di~p~nili~~~-~~~~l~d~g~~~  151 (261)
T cd05034         121 --SRNYIHRDLAARNILVGEN-LVCKIADFGLAR  151 (261)
T ss_pred             --hCCcccCCcchheEEEcCC-CCEEECccccce
Confidence              1248999999999999874 689999998764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=97.87  E-value=0.00018  Score=62.24  Aligned_cols=140  Identities=16%  Similarity=0.002  Sum_probs=78.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEEC-Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG-DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~--~v~  111 (267)
                      ....|..|..+.+|++....    .+..+.+|......   .. .....+|+++++.+....+.+-...... +.  +++
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~   79 (285)
T cd05632           4 QYRVLGKGGFGEVCACQVRA----TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVL   79 (285)
T ss_pred             EEEEEecCCCeEEEEEEECC----CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEE
Confidence            34567777788999987543    35788889875431   01 1111368888888866555543323222 22  789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+...       .          +....  .  .-.......+..+                 +...+..+-  
T Consensus        80 e~~~~~~L~~~-------~----------~~~~~--~--~~~~~~~~~~~~q-----------------l~~~l~~lH--  119 (285)
T cd05632          80 TIMNGGDLKFH-------I----------YNMGN--P--GFEEERALFYAAE-----------------ILCGLEDLH--  119 (285)
T ss_pred             EeccCccHHHH-------H----------HHhcC--C--CCCHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            99987655310       0          00000  0  0011112222211                 122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++ +.+.|+||..+.
T Consensus       120 ------~~~iiH~dikp~Nili~~~-~~~kl~Dfg~~~  150 (285)
T cd05632         120 ------RENTVYRDLKPENILLDDY-GHIRISDLGLAV  150 (285)
T ss_pred             ------hCCeeecCCCHHHEEECCC-CCEEEecCCcce
Confidence                  2248999999999999874 679999999773

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.87  E-value=4.9e-05  Score=66.09  Aligned_cols=137  Identities=14%  Similarity=0.036  Sum_probs=76.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .+..|..|....+|++....    .+..+++|+......   ... ...+|..+++.+..-++. +++....+  .  ++
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv-~~~~~~~~~~~~~lv   79 (291)
T cd05612           5 RIKTVGTGTFGRVHLVRDRI----SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFII-RLFWTEHDQRFLYML   79 (291)
T ss_pred             eeeeeecCCCeEEEEEEEcC----CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHh-hhHhhhccCCeEEEE
Confidence            35667788889999998543    357888998643210   011 113677777777543332 23333322  1  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.+-.  ..     +  ......+..                 .+...+..+-+
T Consensus        80 ~e~~~~~~L~~--------------~~~~~~--~~-----~--~~~~~~~~~-----------------qi~~~l~~lH~  119 (291)
T cd05612          80 MEYVPGGELFS--------------YLRNSG--RF-----S--NSTGLFYAS-----------------EIVCALEYLHS  119 (291)
T ss_pred             EeCCCCCCHHH--------------HHHHcC--CC-----C--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865431              011000  00     0  011111211                 12222233321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       120 --------~~i~H~dlkp~NIli~~~-~~~kl~Dfg~~~  149 (291)
T cd05612         120 --------KEIVYRDLKPENILLDKE-GHIKLTDFGFAK  149 (291)
T ss_pred             --------CCeeecCCCHHHeEECCC-CCEEEEecCcch
Confidence                    348999999999999874 689999998765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=97.87  E-value=8e-05  Score=64.25  Aligned_cols=136  Identities=12%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      +..|..|..+.+|++....    .+..+.+|+.....  .... ...+|+.+++.+...++.+ ++..+.  +.  +|+|
T Consensus         6 ~~~lg~g~~~~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e   80 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKE----TKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVE-LKEAFRRRGKLYLVFE   80 (287)
T ss_pred             EEEecccCCEEEEEEEECC----CCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccc-hhhhEecCCEEEEEEe
Confidence            4567778888999998643    35778888775432  1111 1146888888776555443 232222  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..           +       +....  .  .. ...+..+..+                 +...+..+-   
T Consensus        81 ~~~~~~l~~-----------~-------~~~~~--~--~~-~~~~~~~~~q-----------------i~~~L~~lH---  117 (287)
T cd07848          81 YVEKNMLEL-----------L-------EEMPN--G--VP-PEKVRSYIYQ-----------------LIKAIHWCH---  117 (287)
T ss_pred             cCCCCHHHH-----------H-------HhcCC--C--CC-HHHHHHHHHH-----------------HHHHHHHHH---
Confidence            998743210           0       01000  0  00 1112222221                 222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       118 -----~~~i~H~dlkp~Nill~~~-~~~kl~Dfg~~~  148 (287)
T cd07848         118 -----KNDIVHRDIKPENLLISHN-DVLKLCDFGFAR  148 (287)
T ss_pred             -----HCCeecCCCCHHHEEEcCC-CcEEEeeccCcc
Confidence                 1248999999999999874 689999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=97.86  E-value=9.3e-05  Score=62.87  Aligned_cols=138  Identities=15%  Similarity=0.171  Sum_probs=78.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      -+..+..|..+.+|++....     +..+++|..............|..+++.+...++.+ +++...+    .++++|+
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~-----~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072          10 LVKKLGAGQFGEVWMGYYNN-----STKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVR-LYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             EeeecCCcCCceEEEEEecC-----CceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeee-EEEEEcCCCCcEEEEecC
Confidence            36667778788999987532     467888876543211111236888888776544433 4443332    2889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..          +...  ... . .......|..+                 +...++.|-+    
T Consensus        84 ~~~~L~~-------~l----------~~~~--~~~-~-~~~~~~~~~~~-----------------l~~~l~~LH~----  121 (261)
T cd05072          84 AKGSLLD-------FL----------KSDE--GGK-V-LLPKLIDFSAQ-----------------IAEGMAYIER----  121 (261)
T ss_pred             CCCcHHH-------HH----------HHhc--CCC-C-CHHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            8765532       01          1100  000 0 11122222221                 2222333321    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++++ +.+.+.||+.+.
T Consensus       122 ----~~i~H~dl~p~nili~~~-~~~~l~dfg~~~  151 (261)
T cd05072         122 ----KNYIHRDLRAANVLVSES-LMCKIADFGLAR  151 (261)
T ss_pred             ----CCeeccccchhhEEecCC-CcEEECCCccce
Confidence                248999999999999974 678999998875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=97.86  E-value=0.00012  Score=67.54  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             CcEEEE-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc------ccccChHHHHHHHHHHHhCCCCceEEEEECCe
Q 024452           36 DALQVI-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV------EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG  108 (267)
Q Consensus        36 ~~~~i~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~------~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~  108 (267)
                      .++.+- .+..|--.+||+.+-..    .+..|.+|+..+.-      ..++  ..|-.+|..|+.+--.-++|.++.|.
T Consensus        73 ~DF~Fg~~lGeGSYStV~~A~~~~----t~keYAiKVl~K~~Iike~KvkYV--~~Ek~~l~~L~~hPgivkLy~TFQD~  146 (604)
T KOG0592|consen   73 NDFKFGKILGEGSYSTVVLAREKA----TGKEYAIKVLDKRYIIKEKKVKYV--TREKEALTQLSGHPGIVKLYFTFQDE  146 (604)
T ss_pred             hhcchhheeccccceeEEEeeecC----CCceeeHhhhhHHHHHhhcccchh--hHHHHHHHHhhCCCCeEEEEEEeecc
Confidence            455544 44788889999997543    35788888775421      1233  37888999998664456788887643


Q ss_pred             ----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          109 ----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       109 ----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                          .|.+|.++..+              ...+.++-+          +-+...+|+.                ..+...
T Consensus       147 ~sLYFvLe~A~nGdl--------------l~~i~K~Gs----------fde~caR~YA----------------AeIldA  186 (604)
T KOG0592|consen  147 ESLYFVLEYAPNGDL--------------LDLIKKYGS----------FDETCARFYA----------------AEILDA  186 (604)
T ss_pred             cceEEEEEecCCCcH--------------HHHHHHhCc----------chHHHHHHHH----------------HHHHHH
Confidence                78899886332              222222211          1123333432                112233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.|        +..+++|+|++|.|||++.+ +.+.|-||..|..
T Consensus       187 leyl--------H~~GIIHRDlKPENILLd~d-mhikITDFGsAK~  223 (604)
T KOG0592|consen  187 LEYL--------HSNGIIHRDLKPENILLDKD-GHIKITDFGSAKI  223 (604)
T ss_pred             HHHH--------HhcCceeccCChhheeEcCC-CcEEEeecccccc
Confidence            3433        45679999999999999985 7899999998865

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=97.85  E-value=9.3e-05  Score=62.68  Aligned_cols=137  Identities=15%  Similarity=0.116  Sum_probs=77.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ...+..|....+|++...      +..+++|.............+|..+++.+...++. ++++...  +.  ++++|.+
T Consensus        11 ~~~ig~g~~g~v~~~~~~------~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039          11 GATIGKGEFGDVMLGDYR------GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLV-QLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             eeeeecCCCceEEEEEec------CcEEEEEEeccchhHHHHHHHHHHHHHhcCCccee-eeEEEEcCCCCeEEEEEecC
Confidence            445677777899998742      47888998755432111114678888777654443 3344332  22  8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       ..       .+-..     .  .-.......+..+                 +...+..+.      
T Consensus        84 ~~~L~~-------~~-------~~~~~-----~--~~~~~~~~~~~~q-----------------i~~~l~~lh------  119 (256)
T cd05039          84 KGSLVD-------YL-------RSRGR-----A--VITLAQQLGFALD-----------------VCEGMEYLE------  119 (256)
T ss_pred             CCcHHH-------HH-------HhcCC-----C--CCCHHHHHHHHHH-----------------HHHHHHHHH------
Confidence            765532       11       00000     0  0011112222211                 122222332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        ...++|+|++|+||+++++ +.+.|+||+.+..
T Consensus       120 --~~~i~H~di~p~Nili~~~-~~~~l~d~g~~~~  151 (256)
T cd05039         120 --EKNFVHRDLAARNVLVSED-LVAKVSDFGLAKE  151 (256)
T ss_pred             --hCCccchhcccceEEEeCC-CCEEEcccccccc
Confidence              2358999999999999874 6789999997764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.85  E-value=0.0001  Score=63.57  Aligned_cols=142  Identities=14%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEE-C---Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRF-G---DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~-~---~~--~v  110 (267)
                      .+..|..|....+|.+.........+..+.+|........ . ..-.+|+++++.+...++.+ +++.. .   ..  ++
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~~lv   86 (284)
T cd05079           8 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVK-YKGICTEDGGNGIKLI   86 (284)
T ss_pred             hceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeee-eeeEEecCCCCceEEE
Confidence            4566777878899998743111113578888986543211 1 11246788887775544444 33332 2   12  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++...       .       .   +...+    .+ +.....+..                 .+...+..+- 
T Consensus        87 ~e~~~g~~L~~~-------l-------~---~~~~~----~~-~~~~~~i~~-----------------~i~~aL~~lH-  126 (284)
T cd05079          87 MEFLPSGSLKEY-------L-------P---RNKNK----IN-LKQQLKYAV-----------------QICKGMDYLG-  126 (284)
T ss_pred             EEccCCCCHHHH-------H-------H---hccCC----CC-HHHHHHHHH-----------------HHHHHHHHHH-
Confidence            999998776421       1       0   00000    01 111111211                 1122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++++ +.+.|.||+.+.
T Consensus       127 -------~~gi~H~dlkp~Nil~~~~-~~~~l~dfg~~~  157 (284)
T cd05079         127 -------SRQYVHRDLAARNVLVESE-HQVKIGDFGLTK  157 (284)
T ss_pred             -------HCCeeecccchheEEEcCC-CCEEECCCcccc
Confidence                   2359999999999999874 679999999764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=97.85  E-value=9.2e-05  Score=63.23  Aligned_cols=139  Identities=13%  Similarity=0.066  Sum_probs=77.5

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEeec
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFIH  115 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i~  115 (267)
                      ..+..|....+|++....    ++..+.+|........ .....+|+.+++.++..++. ++++.+..  .  ++++|++
T Consensus        14 ~~lg~g~~g~v~~~~~~~----~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~e~~~   88 (268)
T cd06624          14 VVLGKGTYGIVYAARDLS----TQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIV-QYLGSDSENGFFKIFMEQVP   88 (268)
T ss_pred             EEEecCCceEEEEeEecC----CCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCee-eeeeeeccCCEEEEEEecCC
Confidence            456677778999997542    3567888876543211 11224677887777654444 34544432  2  7899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...       ..      .+.+.    ..   .....+..+..                 .+...+..+-      
T Consensus        89 ~~~L~~~-------l~------~~~~~----~~---~~~~~~~~~~~-----------------qi~~al~~lH------  125 (268)
T cd06624          89 GGSLSAL-------LR------SKWGP----LK---DNEQTIIFYTK-----------------QILEGLKYLH------  125 (268)
T ss_pred             CCCHHHH-------HH------Hhccc----CC---CcHHHHHHHHH-----------------HHHHHHHHHH------
Confidence            8766421       10      00000    00   00111111111                 1222223332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++.+.+.+.|.||+.+.
T Consensus       126 --~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~  157 (268)
T cd06624         126 --DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSK  157 (268)
T ss_pred             --HCCEeecCCCHHHEEEcCCCCeEEEecchhhe
Confidence              13489999999999998644679999998764

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.85  E-value=0.00023  Score=60.56  Aligned_cols=139  Identities=14%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-C--eeEEEee
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-D--GRVEEFI  114 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~--~~v~e~i  114 (267)
                      .-...+..|..+.+|++....     +..+++|....+....-.-.+|+.+++.+...++.+- +.... .  .++++|+
T Consensus         9 ~~~~~lg~g~~~~vy~~~~~~-----~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~-~~~~~~~~~~~v~e~~   82 (260)
T cd05073           9 KLEKKLGAGQFGEVWMATYNK-----HTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL-HAVVTKEPIYIITEFM   82 (260)
T ss_pred             eEEeEecCccceEEEEEEecC-----CccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceE-EEEEcCCCeEEEEEeC
Confidence            345666777788999997532     4678888765442211112368888887765454432 33322 2  2789998


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       .       +.   ...  ...  ........|..                 .+...+..+-     
T Consensus        83 ~~~~L~~-------~-------~~---~~~--~~~--~~~~~~~~~~~-----------------~l~~aL~~lH-----  119 (260)
T cd05073          83 AKGSLLD-------F-------LK---SDE--GSK--QPLPKLIDFSA-----------------QIAEGMAFIE-----  119 (260)
T ss_pred             CCCcHHH-------H-------HH---hCC--ccc--cCHHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8765531       0       10   000  000  01111222221                 1222223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||++++ ++.+.|+||+.+.
T Consensus       120 ---~~~i~H~dl~p~ni~i~~-~~~~~l~d~~~~~  150 (260)
T cd05073         120 ---QRNYIHRDLRAANILVSA-SLVCKIADFGLAR  150 (260)
T ss_pred             ---hCCccccccCcceEEEcC-CCcEEECCCccee
Confidence               124899999999999987 4678999998654

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=97.84  E-value=0.00013  Score=66.07  Aligned_cols=137  Identities=14%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~  109 (267)
                      ..+..|..|..+.||++....    .+..+.+|+.....    ........|..+++.+....+ ++++..+.+ .   +
T Consensus        46 ~i~~~lG~G~fg~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~i-v~~~~~~~~~~~~~l  120 (371)
T cd05622          46 EVVKVIGRGAFGEVQLVRHKS----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV-VQLFYAFQDDRYLYM  120 (371)
T ss_pred             EEEEEEeecCCeEEEEEEECC----CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC-CeEEEEEEcCCEEEE
Confidence            346667778888999998643    35788888864311    000001246666665543333 445554432 2   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..       ..       ..   ...     +.  .....+..                 .+...++.|-
T Consensus       121 v~Ey~~gg~L~~-------~~-------~~---~~~-----~~--~~~~~~~~-----------------qi~~aL~~LH  159 (371)
T cd05622         121 VMEYMPGGDLVN-------LM-------SN---YDV-----PE--KWARFYTA-----------------EVVLALDAIH  159 (371)
T ss_pred             EEcCCCCCcHHH-------HH-------Hh---cCC-----CH--HHHHHHHH-----------------HHHHHHHHHH
Confidence            899999866531       11       10   011     00  11111111                 1222233332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       160 --------~~~ivHrDLkp~NIll~~~-~~ikL~DfG~a~  190 (371)
T cd05622         160 --------SMGFIHRDVKPDNMLLDKS-GHLKLADFGTCM  190 (371)
T ss_pred             --------HCCEEeCCCCHHHEEECCC-CCEEEEeCCcee
Confidence                    2359999999999999874 689999998764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=97.84  E-value=0.00015  Score=61.45  Aligned_cols=139  Identities=16%  Similarity=0.133  Sum_probs=79.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      ....+..|....+|++....    .+..+++|++...... .....+|+.+++.+..-++.+ .++...  +.  ++++|
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~-~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIA----TGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVA-YFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             EEEEecCCCceEEEEeEecC----CCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhc-eEEEEEeCCEEEEEEeC
Confidence            35567788888999997543    2467889987543222 111246777777775555544 444332  22  78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..-       ...        +.  .+    .+ ...+..+..                 .+...+..|.    
T Consensus        82 ~~~~~l~~~-------~~~--------~~--~~----l~-~~~~~~~~~-----------------ql~~~l~~lh----  118 (262)
T cd06613          82 CGGGSLQDI-------YQV--------TR--GP----LS-ELQIAYVCR-----------------ETLKGLAYLH----  118 (262)
T ss_pred             CCCCcHHHH-------HHh--------hc--cC----CC-HHHHHHHHH-----------------HHHHHHHHHH----
Confidence            998776421       100        00  00    01 111111211                 1122223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                          ...++|+|++|.||+++.+ +.+.|.||..+..
T Consensus       119 ----~~~i~h~dl~p~ni~i~~~-~~~~l~d~g~~~~  150 (262)
T cd06613         119 ----ETGKIHRDIKGANILLTED-GDVKLADFGVSAQ  150 (262)
T ss_pred             ----hCCceecCCChhhEEECCC-CCEEECccccchh
Confidence                2248999999999999974 6799999987653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=97.84  E-value=0.00011  Score=62.04  Aligned_cols=146  Identities=20%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeecC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIHA  116 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~G  116 (267)
                      |..|.-..+|++...... ..+..+.+|+.......  .....+|+..+..+. +.-.++++....+    .++++|.+|
T Consensus         3 ig~g~~g~v~~~~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           3 LGEGAFGEVYKGKLKGKD-GKTTEVAVKTLKEDASEEERKDFLKEARVMKKLG-HPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             cccCCceEEEEEEEecCC-CCCceEEeEeeccccchhHHHHHHHHHHHHhhcC-CCChheeeeeecCCCceEEEEEeccC
Confidence            555666789999764310 12578888887654321  111246777777776 3333445554432    288999988


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++...              +..............-.......+..+                 +...+..+-       
T Consensus        81 ~~L~~~--------------l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------l~~al~~lH-------  122 (262)
T cd00192          81 GDLLDY--------------LRKSRPVFPSPEKSTLSLKDLLSFAIQ-----------------IAKGMEYLA-------  122 (262)
T ss_pred             CcHHHH--------------HhhccccccccccccCCHHHHHHHHHH-----------------HHHHHHHHH-------
Confidence            776431              000000000000000011112222211                 222223332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                       ...++|+|++|.||+++++ +.+.++||+.+..
T Consensus       123 -~~~i~H~di~p~nili~~~-~~~~l~dfg~~~~  154 (262)
T cd00192         123 -SKKFVHRDLAARNCLVGED-LVVKISDFGLSRD  154 (262)
T ss_pred             -cCCcccCccCcceEEECCC-CcEEEcccccccc
Confidence             2458999999999999974 7899999988864

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.83  E-value=0.00014  Score=61.64  Aligned_cols=136  Identities=18%  Similarity=0.121  Sum_probs=78.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      +..|..|..+.+|++....     +..+.+|..........+-.+|+.+++.+..-++.+ +++.+..    .++++|.+
T Consensus         9 ~~~lg~G~~~~vy~~~~~~-----~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~iv~e~~~   82 (256)
T cd05114           9 MKELGSGQFGVVHLGKWRA-----QIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQ-LYGVCTQQKPLYIVTEFME   82 (256)
T ss_pred             eeEecCCcCceEEEEEecc-----CceEEEEecccCCccHHHHHHHHHHHHHCCCCCcee-EEEEEccCCCEEEEEEcCC
Confidence            4567778788999997542     357888876543211112246888888876544443 4444432    28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       .          +|....  .  .+ ......+..                 .+...++.+.      
T Consensus        83 ~~~L~~-------~----------~~~~~~--~--~~-~~~~~~~~~-----------------~i~~~l~~lH------  117 (256)
T cd05114          83 NGCLLN-------Y----------LRQRQG--K--LS-KDMLLSMCQ-----------------DVCEGMEYLE------  117 (256)
T ss_pred             CCcHHH-------H----------HHhCcc--C--CC-HHHHHHHHH-----------------HHHHHHHHHH------
Confidence            876531       0          111100  0  01 111111211                 1222233332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       118 --~~~i~H~dl~p~ni~i~~~-~~~kl~d~g~~~  148 (256)
T cd05114         118 --RNSFIHRDLAARNCLVSST-GVVKVSDFGMTR  148 (256)
T ss_pred             --HCCccccccCcceEEEcCC-CeEEECCCCCcc
Confidence              2348999999999999864 678999999775

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.82  E-value=0.00014  Score=68.18  Aligned_cols=141  Identities=11%  Similarity=0.046  Sum_probs=75.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      ...+..|....+|++.....   .+..+++|........... ..+|+.+++.+..-+ .++++..+.  +.  +|+||+
T Consensus        72 ~~~lg~G~~g~vy~a~~~~~---~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpn-iv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         72 TTLVGRNPTTAAFVATRGSD---PKEKVVAKFVMLNDERQAAYARSELHCLAACDHFG-IVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             EEEEEeCCCcEEEEEEEcCC---CCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEEECCEEEEEEECC
Confidence            34456666778999874321   1467777765332211111 135777776664433 344555543  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++...       ..   ..+    ....+.    . ......+..                 .+...++.+-     
T Consensus       148 ~gg~L~~~-------l~---~~~----~~~~~l----~-~~~~~~i~~-----------------qi~~aL~~lH-----  186 (478)
T PTZ00267        148 SGGDLNKQ-------IK---QRL----KEHLPF----Q-EYEVGLLFY-----------------QIVLALDEVH-----  186 (478)
T ss_pred             CCCCHHHH-------HH---HHH----hccCCC----C-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            98876421       10   000    000000    0 011111111                 1112222222     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.|||++++ +.+.|+||+.|.
T Consensus       187 ---~~~ivHrDlkp~NIll~~~-~~~kL~DFgla~  217 (478)
T PTZ00267        187 ---SRKMMHRDLKSANIFLMPT-GIIKLGDFGFSK  217 (478)
T ss_pred             ---hCCEEECCcCHHhEEECCC-CcEEEEeCcCce
Confidence               2359999999999999974 689999999875

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=0.0001  Score=69.35  Aligned_cols=138  Identities=16%  Similarity=0.167  Sum_probs=79.7

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccCh------HHHHHHHHHHHhCCCCceEEEEECC--
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNR------DDEIRTFECMSSQGQGPRLLGRFGD--  107 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr------~~E~~~~~~l~~~gl~P~v~~~~~~--  107 (267)
                      -.+.|..|.-|.-.+|.+|.-.+    ...-|.+|-..+..  .+.|      +.|..+|..+ .....-++|+.+.+  
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvD----T~~lYAmKTLrKaD--Vl~rnQvaHVKAERDILAEA-Dn~WVVrLyySFQDkd  702 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVD----TRALYAMKTLRKAD--VLMRNQVAHVKAERDILAEA-DNEWVVRLYYSFQDKD  702 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecc----hhhHHHHhhhHHHH--HHhhhhhhhhhhhhhhHhhc-CCcceEEEEEEeccCC
Confidence            45678888777777777775321    12334444332211  1111      2455555433 23467888988754  


Q ss_pred             e--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 G--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 ~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                      .  .||+||+|..+-              .+|-++-          -+-+.+.+|+-.  +              +-=.+
T Consensus       703 nLYFVMdYIPGGDmM--------------SLLIrmg----------IFeE~LARFYIA--E--------------ltcAi  742 (1034)
T KOG0608|consen  703 NLYFVMDYIPGGDMM--------------SLLIRMG----------IFEEDLARFYIA--E--------------LTCAI  742 (1034)
T ss_pred             ceEEEEeccCCccHH--------------HHHHHhc----------cCHHHHHHHHHH--H--------------HHHHH
Confidence            2  899999985432              1111111          122345554311  1              11111


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.        -+..+|||+|++|+|||+|.+ |-+.|-||..|.
T Consensus       743 es--------VHkmGFIHRDiKPDNILIDrd-GHIKLTDFGLCT  777 (1034)
T KOG0608|consen  743 ES--------VHKMGFIHRDIKPDNILIDRD-GHIKLTDFGLCT  777 (1034)
T ss_pred             HH--------HHhccceecccCccceEEccC-Cceeeeeccccc
Confidence            22        355789999999999999985 679999999985

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=97.81  E-value=0.00016  Score=63.23  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=45.1

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCc--eEEEEEcCCCc-ccc-cChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLAR--NVLVRIYGEGV-EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~--~~vlRi~~~~~-~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e  112 (267)
                      ..|..|....+|++....    ++.  .+.+|...... ... ....+|+.++..+.++.-.+++++.+.. +   +++|
T Consensus        13 ~~lg~G~~g~V~~a~~~~----~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e   88 (303)
T cd05088          13 DVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIE   88 (303)
T ss_pred             eeecCCCCceEEEEEEcc----CCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEE
Confidence            456777778999997532    123  33444433221 111 1123688888888666555677776643 2   8899


Q ss_pred             eecCCCC
Q 024452          113 FIHARTL  119 (267)
Q Consensus       113 ~i~G~~l  119 (267)
                      |++|.++
T Consensus        89 ~~~~~~L   95 (303)
T cd05088          89 YAPHGNL   95 (303)
T ss_pred             eCCCCcH
Confidence            9998654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=97.81  E-value=0.00012  Score=61.60  Aligned_cols=134  Identities=18%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i~  115 (267)
                      .|..|..+.+|++...     ++..+++|+.......  .....+|.++++.+..-++.+ ++....  +  .+++||++
T Consensus         2 ~ig~g~~g~vy~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~lv~e~~~   75 (250)
T cd05085           2 LLGKGNFGEVFKGTLK-----DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVK-LIGVCTQRQPIYIVMELVP   75 (250)
T ss_pred             ccCCCCCceEEEEEec-----CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCe-EEEEEecCCccEEEEECCC
Confidence            3556667899999743     2578899987654321  111236777777775444433 444432  2  28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...              +.   ....    ... ...+..+..+                 +...+..+.      
T Consensus        76 ~~~L~~~--------------~~---~~~~----~~~-~~~~~~~~~~-----------------i~~~l~~lH------  110 (250)
T cd05085          76 GGDFLSF--------------LR---KKKD----ELK-TKQLVKFALD-----------------AAAGMAYLE------  110 (250)
T ss_pred             CCcHHHH--------------HH---hcCC----CCC-HHHHHHHHHH-----------------HHHHHHHHH------
Confidence            8654320              00   0000    001 1111112111                 112222222      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       111 --~~~~~H~dl~p~nili~~~-~~~~l~d~g~~~  141 (250)
T cd05085         111 --SKNCIHRDLAARNCLVGEN-NVLKISDFGMSR  141 (250)
T ss_pred             --hCCeeecccChheEEEcCC-CeEEECCCccce
Confidence              2348999999999999874 678999998764

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.81  E-value=0.00025  Score=61.03  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~  113 (267)
                      ++.+..|..+.+|++....    .+..+.+|+...+.. .. ....+|..+++.+..-.+ .++++.+  .+.  +++||
T Consensus         6 ~~~lg~g~~~~v~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLL----TRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYI-IGFYGAFFVENRISICTEF   80 (279)
T ss_pred             eeeeccCCCeEEEEEEEcC----CCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCe-eeEEEEEEECCEEEEEEec
Confidence            4567788888999997532    357888888654321 11 011256666666643233 3344433  222  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+...                  .  ..     +.  ..+..+..                 .+...+..+-    
T Consensus        81 ~~~~~l~~~------------------~--~~-----~~--~~~~~~~~-----------------qi~~~l~~lH----  112 (279)
T cd06619          81 MDGGSLDVY------------------R--KI-----PE--HVLGRIAV-----------------AVVKGLTYLW----  112 (279)
T ss_pred             CCCCChHHh------------------h--cC-----CH--HHHHHHHH-----------------HHHHHHHHHH----
Confidence            998765310                  0  00     00  01111111                 1222223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       113 ----~~~i~H~dlkp~Nill~~~-~~~~l~dfg~~~  143 (279)
T cd06619         113 ----SLKILHRDVKPSNMLVNTR-GQVKLCDFGVST  143 (279)
T ss_pred             ----HCCEeeCCCCHHHEEECCC-CCEEEeeCCcce
Confidence                2358999999999999874 789999999774

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.81  E-value=0.00011  Score=63.35  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEE--CC--e--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRF--GD--G--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~--~--~v~  111 (267)
                      -+..+..|-.+.+|++.........+..+.+|.......... .-.+|+++++.+...++.+ .++..  .+  .  +++
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~-~~~~~~~~~~~~~~lv~   86 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVK-YKGVCYSAGRRNLRLVM   86 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeE-EEEEEccCCCCceEEEE
Confidence            355677777889999874311111356888998754432211 1247888888776544443 33332  22  1  789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++...       .          +....   . . .......+..                 .+...+..|-  
T Consensus        87 e~~~~~~L~~~-------l----------~~~~~---~-l-~~~~~~~~~~-----------------~l~~aL~~LH--  125 (284)
T cd05081          87 EYLPYGSLRDY-------L----------QKHRE---R-L-DHRKLLLYAS-----------------QICKGMEYLG--  125 (284)
T ss_pred             EecCCCCHHHH-------H----------HhcCc---C-C-CHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            99998766421       0          01000   0 0 0111111211                 1222233332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       126 ------~~~i~H~dlkp~nili~~~-~~~~l~dfg~~~  156 (284)
T cd05081         126 ------SKRYVHRDLATRNILVESE-NRVKIGDFGLTK  156 (284)
T ss_pred             ------HCCceeccCCHhhEEECCC-CeEEECCCcccc
Confidence                  1248999999999999874 678999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.80  E-value=0.00014  Score=62.06  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=75.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~  113 (267)
                      ...+..|..+.+|++..... +.....+.+|.......  ...+-.+|..+++.+...++. +.++... ++   +++||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~-~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~e~   86 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLP-GKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNII-HLEGVVTKSKPVMIVTEY   86 (267)
T ss_pred             eeeecccCCCceEEEEEecC-CCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcc-eEEEEEecCCccEEEEEc
Confidence            35567777789999875321 11234677887644321  111124677777776544443 3444443 22   78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .   ....    ... ...+..+..+                 +...+..+-    
T Consensus        87 ~~~~~L~~-------~~-------~---~~~~----~~~-~~~~~~i~~~-----------------i~~~l~~lH----  123 (267)
T cd05066          87 MENGSLDA-------FL-------R---KHDG----QFT-VIQLVGMLRG-----------------IASGMKYLS----  123 (267)
T ss_pred             CCCCCHHH-------HH-------H---hcCC----CCC-HHHHHHHHHH-----------------HHHHHHHHH----
Confidence            99875532       11       0   0000    011 1111112111                 122223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++++ +.+.++||+.+.
T Consensus       124 ----~~~i~h~dlkp~nili~~~-~~~~l~dfg~~~  154 (267)
T cd05066         124 ----DMGYVHRDLAARNILVNSN-LVCKVSDFGLSR  154 (267)
T ss_pred             ----HCCEeehhhchhcEEECCC-CeEEeCCCCccc
Confidence                2348999999999999874 678999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.80  E-value=0.00017  Score=61.24  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=76.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc------cccChHHHHHHHHHHHhCCCCceEEEEECC--e--e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE------VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--R  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~------~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~  109 (267)
                      -..+..|....+|.+....    .+..+.+|.......      ......+|+++++.+...++ .++++...+  .  +
T Consensus         7 ~~~lg~g~~~~vy~~~~~~----~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~   81 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVD----TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERI-VQYYGCLRDDETLSI   81 (263)
T ss_pred             cceecCCCceEEEEEEEcC----CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCe-eeeEEEEccCCeEEE
Confidence            3456777778899997532    357888887643211      01112457777777654444 345554432  1  7


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|++|.++...       ..       +. . ..     +  ......+..                 .+...+..+.
T Consensus        82 v~e~~~~~~l~~~-------~~-------~~-~-~~-----~--~~~~~~~~~-----------------~l~~~l~~lH  121 (263)
T cd06625          82 FMEYMPGGSVKDQ-------LK-------AY-G-AL-----T--ETVTRKYTR-----------------QILEGVEYLH  121 (263)
T ss_pred             EEEECCCCcHHHH-------HH-------Hh-C-CC-----C--HHHHHHHHH-----------------HHHHHHHHHH
Confidence            8999988765320       11       00 0 00     0  011111211                 1222233332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       122 --------~~~i~H~dl~p~nilv~~~-~~~~l~dfg~~~  152 (263)
T cd06625         122 --------SNMIVHRDIKGANILRDSA-GNVKLGDFGASK  152 (263)
T ss_pred             --------hCCeecCCCCHHHEEEcCC-CCEEEeecccce
Confidence                    2358999999999999874 689999999774

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=97.78  E-value=9.8e-05  Score=63.49  Aligned_cols=135  Identities=12%  Similarity=0.094  Sum_probs=76.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      .+..+..|..+.+|++....    .+..+++|+..... .. .....+|+.+++.+...++ +++++...  +.  +++|
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNR----TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV-TKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             hhhhcccCCCeEEEEEEEcc----CCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCE-eeEEEEEEECCEEEEEEe
Confidence            34567777788999997432    35788899875332 11 1122357777666643333 44554433  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..       .   ....      . ...+..+..                 .+...++.+.   
T Consensus        83 ~~~~~~L~~-------~i-------~---~~~l------~-~~~~~~~~~-----------------~l~~~l~~lh---  118 (277)
T cd06640          83 YLGGGSALD-------LL-------R---AGPF------D-EFQIATMLK-----------------EILKGLDYLH---  118 (277)
T ss_pred             cCCCCcHHH-------HH-------h---cCCC------C-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            999877532       01       0   0000      0 011111111                 1122223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                           ...++|+|++|+||+++. ++.+.++||..+
T Consensus       119 -----~~~ivH~dl~p~Nil~~~-~~~~~l~dfg~~  148 (277)
T cd06640         119 -----SEKKIHRDIKAANVLLSE-QGDVKLADFGVA  148 (277)
T ss_pred             -----hCCccCcCCChhhEEEcC-CCCEEEcccccc
Confidence                 235889999999999987 467999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.77  E-value=0.00018  Score=64.87  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--C--e-eEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--D--G-RVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~-~v~e~i~  115 (267)
                      .|..|-...+|+....+     +..+.||........ ..+-.+|+.++..+....+.. +++++.  +  - +|+||++
T Consensus        82 ~ig~Ggfg~VYkG~l~~-----~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~-LlGyC~e~~~~~~LVYEym~  155 (361)
T KOG1187|consen   82 LIGEGGFGTVYKGVLSD-----GTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVK-LLGYCLEGGEHRLLVYEYMP  155 (361)
T ss_pred             ceecCCCeEEEEEEECC-----CCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCccc-EEEEEecCCceEEEEEEccC
Confidence            35556679999988753     367888865543321 111237888888887444444 566653  2  2 8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      ..++..                 .||.....    +     + .|...+. +.          -.....+++|-+     
T Consensus       156 nGsL~d-----------------~L~~~~~~----~-----L-~W~~R~k-Ia----------~g~A~gL~yLH~-----  192 (361)
T KOG1187|consen  156 NGSLED-----------------HLHGKKGE----P-----L-DWETRLK-IA----------LGAARGLAYLHE-----  192 (361)
T ss_pred             CCCHHH-----------------HhCCCCCC----C-----C-CHHHHHH-HH----------HHHHHHHHHHcc-----
Confidence            655542                 23332211    1     1 2332221 10          012233444432     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      ..++.++|+|+++.|||+|++ -...|-||..|..++
T Consensus       193 ~~~~~iiHrDiKssNILLD~~-~~aKlsDFGLa~~~~  228 (361)
T KOG1187|consen  193 GCPPPIIHRDIKSSNILLDED-FNAKLSDFGLAKLGP  228 (361)
T ss_pred             CCCCCEecCCCCHHHeeECCC-CCEEccCccCcccCC
Confidence            344579999999999999974 678999998775554

>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]

Probab=97.77  E-value=3.1e-05  Score=63.44  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=78.8

Q ss_pred             CC-CceEEEEECCeeEEEeecCCCCCcc---cCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcc
Q 024452           96 GQ-GPRLLGRFGDGRVEEFIHARTLSAA---DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAK  171 (267)
Q Consensus        96 gl-~P~v~~~~~~~~v~e~i~G~~l~~~---~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  171 (267)
                      |. +.+|+..+.+.+++|+..|......   .=+|..-.+-++++++++|+-.+++++   -...+.+|+..+-+.....
T Consensus        64 G~Gaarvla~d~~alLlEra~~~rsl~~l~~~G~Dd~aTrIac~a~~rlh~Prp~ppp---~L~pL~~wf~sLf~~a~~d  140 (274)
T COG3570          64 GIGAARVLAQDDNALLLERAGGERSLDVLVRDGNDDAATRIACEALARLHAPRPSPPP---ELLPLERWFESLFRKARQD  140 (274)
T ss_pred             cCCcchhhccCccHHHHHhccccchHHHHHHhCCchHHHHHHHHHHHHhhCCCCCCCc---ccccHHHHHHHHHHHHhhc
Confidence            54 3678887666689999988654321   112334566788899999997443222   1223556665442211100


Q ss_pred             cccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          172 DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       172 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                             ..+.-+...+.+.+-..+...++.|||+|.+|||-.+ ...-.+||-- .-+|.++||.|.
T Consensus       141 -------~~i~v~aA~~A~~LL~~p~di~pLHGDlHH~Nild~~-~rGWlvIDPk-gl~Gdrg~D~AN  199 (274)
T COG3570         141 -------GSIYVEAARAAQTLLDTPRDIRPLHGDLHHGNILDGD-RRGWLVIDPK-GLIGDRGFDYAN  199 (274)
T ss_pred             -------CCcchhHHHHHHHHhcCccccccCcccccccccccCC-cCceEEEccc-cccCccccchHh
Confidence                   0111111112222224577889999999999999543 2357799976 456999999775

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=97.77  E-value=0.00012  Score=65.50  Aligned_cols=138  Identities=15%  Similarity=0.094  Sum_probs=78.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      -+..|..|....||++.....   ....+.+|......   .... ...+|..+++.+..-++. ++++.+.+ +   ++
T Consensus        34 ~~~~ig~G~~g~Vy~a~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv-~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         34 FIRTLGTGSFGRVILATYKNE---DFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCV-NLYGSFKDESYLYLV  109 (340)
T ss_pred             EEEEEeecCCeEEEEEEEECC---CCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCc-ceEEEEEeCCEEEEE
Confidence            467778888899999975321   23578888764321   1111 113677888777544443 45554432 2   78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       ..       .   ...    . .. ......+..                 .+...+..+. 
T Consensus       110 ~Ey~~~g~L~~-------~i-------~---~~~----~-~~-~~~~~~~~~-----------------qi~~aL~~LH-  148 (340)
T PTZ00426        110 LEFVIGGEFFT-------FL-------R---RNK----R-FP-NDVGCFYAA-----------------QIVLIFEYLQ-  148 (340)
T ss_pred             EeCCCCCcHHH-------HH-------H---HcC----C-CC-HHHHHHHHH-----------------HHHHHHHHHH-
Confidence            99998865531       01       0   000    0 00 011111211                 1222333332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|+|||+++ ++.+.|+||..|.
T Consensus       149 -------~~~ivHrDLkp~NILl~~-~~~ikL~DFG~a~  179 (340)
T PTZ00426        149 -------SLNIVYRDLKPENLLLDK-DGFIKMTDFGFAK  179 (340)
T ss_pred             -------HCCeEccCCCHHHEEECC-CCCEEEecCCCCe
Confidence                   235999999999999987 4689999999875

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=97.76  E-value=0.00016  Score=63.94  Aligned_cols=29  Identities=21%  Similarity=0.150  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       116 ~ivHrDlkp~Nili~~~-~~~kl~Dfg~a~  144 (330)
T cd05586         116 DIVYRDLKPENILLDAT-GHIALCDFGLSK  144 (330)
T ss_pred             CeEeccCCHHHeEECCC-CCEEEecCCcCc
Confidence            49999999999999874 689999999775

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=97.76  E-value=0.00013  Score=61.19  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEE-C---Ce--eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRF-G---DG--RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~-~---~~--~v  110 (267)
                      .+.+..|-...+|++....    .+..+++|+......  ...+ -.+|+.+++.+...++.+ ++... .   +.  ++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~lv   79 (260)
T cd06606           5 GELLGRGSFGSVYLALDKD----TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVR-YYGSERDEEKNTLNIF   79 (260)
T ss_pred             eeEeeecCceEEEEEEECC----CCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEee-EEEEEecCCCCeEEEE
Confidence            3556777788999997643    357888888754331  1111 146777777777544443 33332 2   22  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..              .+.+..    +    .+ ......+..                 .+...+..+.+
T Consensus        80 ~e~~~~~~L~~--------------~~~~~~----~----~~-~~~~~~~~~-----------------~l~~~l~~lh~  119 (260)
T cd06606          80 LEYVSGGSLSS--------------LLKKFG----K----LP-EPVIRKYTR-----------------QILEGLAYLHS  119 (260)
T ss_pred             EEecCCCcHHH--------------HHHHcC----C----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            89988765431              111110    0    01 011111211                 11222233321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.||++++ ++.+.|+||..+..
T Consensus       120 --------~~~~h~dl~p~ni~i~~-~~~~~l~d~~~~~~  150 (260)
T cd06606         120 --------NGIVHRDIKGANILVDS-DGVVKLADFGCAKR  150 (260)
T ss_pred             --------CCccccCCCHHHEEEcC-CCCEEEcccccEEe
Confidence                    35899999999999997 47899999987754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=97.75  E-value=0.00016  Score=62.68  Aligned_cols=138  Identities=12%  Similarity=0.070  Sum_probs=77.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      ..+..|..|....||++....    .+..+.+|....... . .....+|.++++.+...++ .+++....+  .  +++
T Consensus         8 ~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~   82 (288)
T cd07871           8 VKLDKLGEGTYATVFKGRSKL----TENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANI-VTLHDIIHTERCLTLVF   82 (288)
T ss_pred             eEeeEEecCCCEEEEEEEECC----CCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCE-eeEEEEEcCCCeEEEEE
Confidence            346777888889999997543    357888887643221 1 1112378888887754443 345544432  2  788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++| .+..              .+.   ...   .  .........+..                 .+...+..|-  
T Consensus        83 e~~~~-~l~~--------------~l~---~~~---~--~~~~~~~~~~~~-----------------qi~~aL~~LH--  120 (288)
T cd07871          83 EYLDS-DLKQ--------------YLD---NCG---N--LMSMHNVKIFMF-----------------QLLRGLSYCH--  120 (288)
T ss_pred             eCCCc-CHHH--------------HHH---hcC---C--CCCHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            98876 2211              010   000   0  000111222221                 1222233332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.|||++++ +.+.|+||..|.
T Consensus       121 ------~~~ivH~dlkp~Nil~~~~-~~~kl~DfG~~~  151 (288)
T cd07871         121 ------KRKILHRDLKPQNLLINEK-GELKLADFGLAR  151 (288)
T ss_pred             ------hCCcccCCCCHHHEEECCC-CCEEECcCccee
Confidence                  2358999999999999874 689999998764

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=97.75  E-value=0.00027  Score=59.43  Aligned_cols=141  Identities=12%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--c-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      ...+..|....+|++....    ++..+++|.......  . ......|.++++.+..-++ .+++....  +.  ++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~-~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           5 IKQIGKGSFGKVYLVRRKS----DGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNI-IKYYESFEEKGKLCIVME   79 (258)
T ss_pred             EeeeccCCCeEEEEEEEcC----CCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCCh-hheEEEEecCCEEEEEEE
Confidence            3556677778999998643    357888888754321  1 1112367777777763333 33343332  22  7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.+.+.   .... .. ...+..+..                 .+...+..+.+  
T Consensus        80 ~~~~~~L~~--------------~l~~~~~---~~~~-~~-~~~~~~i~~-----------------~i~~~l~~lh~--  121 (258)
T cd08215          80 YADGGDLSQ--------------KIKKQKK---EGKP-FP-EEQILDWFV-----------------QLCLALKYLHS--  121 (258)
T ss_pred             ecCCCcHHH--------------HHHHhhc---cCCC-cC-HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            998876532              1111000   0000 00 111111211                 12222233322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ..++|+|++++||++++ ++.+.|+||+.+..
T Consensus       122 ------~~~~H~dl~~~nil~~~-~~~~~l~d~~~~~~  152 (258)
T cd08215         122 ------RKILHRDIKPQNIFLTS-NGLVKLGDFGISKV  152 (258)
T ss_pred             ------CCEecccCChHHeEEcC-CCcEEECCccceee
Confidence                  26899999999999997 46899999988754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=97.74  E-value=0.00031  Score=59.79  Aligned_cols=141  Identities=14%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~  111 (267)
                      .+.+..|..+.+|++....    ++..+++|......    ....+..+|+.+++.+..-++. ++++.+  .+.  +++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~v~   81 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLL----DRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVI-KYLDSFIEDNELNIVL   81 (267)
T ss_pred             eeeeccCCCeeEEEEEEeC----CCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCccee-eeeeeEEECCeEEEEE
Confidence            4456777788999998543    35788888653211    1111224677777777544433 334332  222  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...    .+..       ... .-....+..+..                 .+...+..+.  
T Consensus        82 e~~~~~~L~~-------~~~----~~~~-------~~~-~~~~~~~~~~~~-----------------~i~~~l~~LH--  123 (267)
T cd08228          82 ELADAGDLSQ-------MIK----YFKK-------QKR-LIPERTVWKYFV-----------------QLCSAVEHMH--  123 (267)
T ss_pred             EecCCCcHHH-------HHH----Hhhh-------ccC-CCCHHHHHHHHH-----------------HHHHHHHHHh--
Confidence            9998765431       111    0000       000 000111111211                 1122222222  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ...++|+|++|.||+++.+ +.+.++||+.+..
T Consensus       124 ------~~~i~H~dl~~~nil~~~~-~~~~l~d~g~~~~  155 (267)
T cd08228         124 ------SRRVMHRDIKPANVFITAT-GVVKLGDLGLGRF  155 (267)
T ss_pred             ------hCCeeCCCCCHHHEEEcCC-CCEEECcccccee
Confidence                  2358999999999999874 6799999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=97.74  E-value=0.0002  Score=61.52  Aligned_cols=143  Identities=20%  Similarity=0.196  Sum_probs=74.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEECC---eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e  112 (267)
                      -.++.|..|....+|+++....+......+.+|+....... .. .-.+|..+++.+.... .+++++.+..   .++++
T Consensus        10 ~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~l~~~   88 (279)
T cd05109          10 KKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPY-VCRLLGICLTSTVQLVTQ   88 (279)
T ss_pred             eeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCC-CceEEEEEcCCCcEEEEE
Confidence            34667788888999999754211000124778876543211 11 1124555555443322 3445555432   27888


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..          +...  .  ... ......|..+                 +...+..+.   
T Consensus        89 ~~~~g~l~~-------~l----------~~~~--~--~~~-~~~~~~~~~q-----------------i~~~L~~lH---  126 (279)
T cd05109          89 LMPYGCLLD-------YV----------RENK--D--RIG-SQDLLNWCVQ-----------------IAKGMSYLE---  126 (279)
T ss_pred             cCCCCCHHH-------HH----------hhcc--C--CCC-HHHHHHHHHH-----------------HHHHHHHHH---
Confidence            888755421       01          1100  0  011 1112222211                 222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|+||+++++ +.+.|+||..+.
T Consensus       127 -----~~~iiH~dlkp~Nil~~~~-~~~kL~dfG~~~  157 (279)
T cd05109         127 -----EVRLVHRDLAARNVLVKSP-NHVKITDFGLAR  157 (279)
T ss_pred             -----HCCeeccccccceEEEcCC-CcEEECCCCcee
Confidence                 2348999999999999864 679999998764

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=97.74  E-value=0.00017  Score=61.85  Aligned_cols=135  Identities=12%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHh--CCCCceEEEEECCe----eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSS--QGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~--~gl~P~v~~~~~~~----~v~e  112 (267)
                      ..+..|..+.+|++....    .+..+++|....... ... .-.+|..+++.+..  +.-..++++.+.++    ++++
T Consensus         7 ~~l~~g~~g~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e   82 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVP----TGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME   82 (277)
T ss_pred             hheeccCCceEEEEEEcC----CCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence            456677788999987542    357889998654321 111 12467777777763  22223344443322    7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.. +  ..      . ......+..                 .+...+..+.   
T Consensus        83 ~~~~~~L~~--------------~~~~-~--~l------~-~~~~~~i~~-----------------~i~~~l~~lh---  118 (277)
T cd06917          83 YAEGGSVRT--------------LMKA-G--PI------A-EKYISVIIR-----------------EVLVALKYIH---  118 (277)
T ss_pred             cCCCCcHHH--------------HHHc-c--CC------C-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            998865521              0100 0  00      0 111111111                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|+.|.||++++ .+.+.++||+.+.
T Consensus       119 -----~~~i~H~dl~p~ni~i~~-~~~~~l~dfg~~~  149 (277)
T cd06917         119 -----KVGVIHRDIKAANILVTN-TGNVKLCDFGVAA  149 (277)
T ss_pred             -----hCCcccCCcCHHHEEEcC-CCCEEEccCCcee
Confidence                 235899999999999997 4689999998664

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=97.74  E-value=0.00041  Score=60.80  Aligned_cols=138  Identities=14%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---cc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ...+..|..+.+|++....    .+..+++|........   .. ....|+++++.+...++ +++++...++    +++
T Consensus         6 ~~~ig~g~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKG----TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFL-PTLYASFQTETYLCLVM   80 (316)
T ss_pred             eeeecCCccEEEEEEEEcC----CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCc-hhheeeeecCCEEEEEE
Confidence            4567778788999998643    3578999987543211   11 11357777777764343 4445554322    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++...              +.   ..  +....+.  .....+..                 .+...+..+-  
T Consensus        81 e~~~~~~L~~~--------------~~---~~--~~~~l~~--~~~~~~~~-----------------qi~~~l~~lH--  120 (316)
T cd05574          81 DYCPGGELFRL--------------LQ---RQ--PGKCLSE--EVARFYAA-----------------EVLLALEYLH--  120 (316)
T ss_pred             EecCCCCHHHH--------------HH---hC--CCCccCH--HHHHHHHH-----------------HHHHHHHHHH--
Confidence            99998765320              10   00  0000000  11111211                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       121 ------~~~i~H~dlkp~Nili~~~-~~~~l~dfg~~~  151 (316)
T cd05574         121 ------LLGIVYRDLKPENILLHES-GHIMLSDFDLSK  151 (316)
T ss_pred             ------HCCeeccCCChHHeEEcCC-CCEEEeecchhh
Confidence                  1348999999999999874 689999999875

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=97.74  E-value=0.00024  Score=61.22  Aligned_cols=136  Identities=17%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ..|..|....+|++....    .+..+.+|........ .....+|+++++.+...++. +++..+.  +.  ++++|++
T Consensus        11 ~~lg~g~~g~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii-~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643          11 GELGDGAFGKVYKAQNKE----TGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIV-KLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             hhcccCCCeEEEEEEECC----CCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCee-eEEEEEeeCCEEEEEEEecC
Confidence            346677788999997543    2466777776543221 11223677777777544443 3444332  22  8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+...       .          ++...+.     .......+..+                 +...+..|-+     
T Consensus        86 ~~~l~~~-------~----------~~~~~~l-----~~~~~~~~~~q-----------------i~~~L~~LH~-----  121 (282)
T cd06643          86 GGAVDAV-------M----------LELERPL-----TEPQIRVVCKQ-----------------TLEALNYLHE-----  121 (282)
T ss_pred             CCcHHHH-------H----------HhcCCCC-----CHHHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8665320       0          1101100     01112222211                 1222233321     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.||+++.+ +.+.++||..+.
T Consensus       122 ---~~i~H~dlkp~nili~~~-~~~kl~dfg~~~  151 (282)
T cd06643         122 ---NKIIHRDLKAGNILFTLD-GDIKLADFGVSA  151 (282)
T ss_pred             ---CCeeecCCCcccEEEccC-CCEEEccccccc
Confidence               258999999999999874 689999998774

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=97.73  E-value=4.5e-05  Score=67.20  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc--ChHHHHHHHHHHHhCCCCceEEEEEC-Ce----eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF--NRDDEIRTFECMSSQGQGPRLLGRFG-DG----RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~--dr~~E~~~~~~l~~~gl~P~v~~~~~-~~----~v  110 (267)
                      -++..|..|....||+|....    .+.-|.+|.-.-..+..+  ...+|+++++.. +.-..-.-|+.+. ++    ++
T Consensus        82 e~~~~lG~G~gG~V~kv~Hk~----t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~-~spyIV~~ygaF~~~~~~isI~  156 (364)
T KOG0581|consen   82 ERLGVLGSGNGGTVYKVRHKP----TGKIYALKVILLNIDPALQKQILRELEILRSC-QSPYIVGFYGAFYSNGEEISIC  156 (364)
T ss_pred             hhhhhcccCCCcEEEEEEEcC----CCeEEEEEeecccCCHHHHHHHHHHHHHHhhC-CCCCeeeEeEEEEeCCceEEee
Confidence            356777899999999998764    246666775422221111  113677766655 3322233344332 22    77


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      |||++|..+..       +...+++         .     +.  ..+.+..                 ..+.+-+.+|. 
T Consensus       157 mEYMDgGSLd~-------~~k~~g~---------i-----~E--~~L~~ia-----------------~~VL~GL~YLh-  195 (364)
T KOG0581|consen  157 MEYMDGGSLDD-------ILKRVGR---------I-----PE--PVLGKIA-----------------RAVLRGLSYLH-  195 (364)
T ss_pred             hhhcCCCCHHH-------HHhhcCC---------C-----CH--HHHHHHH-----------------HHHHHHHHHHh-
Confidence            99999977752       2221110         1     10  0111111                 11222233343 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ....++|+|++|.|||++. .|+|.|-||.-++.
T Consensus       196 ------~~~~IIHRDIKPsNlLvNs-kGeVKicDFGVS~~  228 (364)
T KOG0581|consen  196 ------EERKIIHRDIKPSNLLVNS-KGEVKICDFGVSGI  228 (364)
T ss_pred             ------hccCeeeccCCHHHeeecc-CCCEEeccccccHH
Confidence                  2255999999999999997 58999999997764

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=97.73  E-value=0.00025  Score=62.30  Aligned_cols=142  Identities=17%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECC---eeEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~  113 (267)
                      .+..|..|....||++............+.+|....... .. .....|..+++.+...++. ++++....   ..+++|
T Consensus        11 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~~~g~~~~~~~~~v~e~   89 (316)
T cd05108          11 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC-RLLGICLTSTVQLITQL   89 (316)
T ss_pred             eeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCC-eEEEEEcCCCceeeeec
Confidence            456677787889999975321111123578888654321 11 1113566777766544443 45555432   277888


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      +++..+..       .          ++....    ... ...+..|..                 .+...++.|-    
T Consensus        90 ~~~g~l~~-------~----------l~~~~~----~~~-~~~~~~~~~-----------------qi~~~L~~LH----  126 (316)
T cd05108          90 MPFGCLLD-------Y----------VREHKD----NIG-SQYLLNWCV-----------------QIAKGMNYLE----  126 (316)
T ss_pred             CCCCCHHH-------H----------HHhccc----cCC-HHHHHHHHH-----------------HHHHHHHHHH----
Confidence            87654421       0          111000    001 111112221                 1222233332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       127 ----~~~iiH~dlkp~Nill~~~-~~~kl~DfG~a~  157 (316)
T cd05108         127 ----ERRLVHRDLAARNVLVKTP-QHVKITDFGLAK  157 (316)
T ss_pred             ----hcCeeccccchhheEecCC-CcEEEccccccc
Confidence                2348999999999999874 679999998875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.73  E-value=0.00017  Score=60.81  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=77.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ....+..|....+|++....    .+..+++|......  .... .-..|+.+++.+..-++. +++....  +.  +|+
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~-~~~~~~~~~~~~~lv~   78 (256)
T cd08220           4 KIRVVGRGAFGIVHLCRRKA----DQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNII-EYYENFLEDKALMIVM   78 (256)
T ss_pred             EEEEecccCceEEEEEEEcC----CCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchh-heeeeEecCCEEEEEE
Confidence            35667778788999987543    35788888764321  1111 113577777777543333 3444332  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...       +.+.     .  .-....+..+..                 .+.+.+..+.  
T Consensus        79 e~~~~~~L~~-------~~~-------~~~~-----~--~~~~~~~~~~~~-----------------~i~~~l~~lh--  118 (256)
T cd08220          79 EYAPGGTLAE-------YIQ-------KRCN-----S--LLDEDTILHFFV-----------------QILLALHHVH--  118 (256)
T ss_pred             ecCCCCCHHH-------HHH-------Hhcc-----c--CCCHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9999876532       111       0000     0  000111111211                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++++.+.+.||+.+.
T Consensus       119 ------~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~  150 (256)
T cd08220         119 ------TKLILHRDLKTQNILLDKHKMVVKIGDFGISK  150 (256)
T ss_pred             ------hCCeecCCCCHHHEEEcCCCCEEEEccCCCce
Confidence                  23589999999999998654457899999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=97.73  E-value=0.00029  Score=61.69  Aligned_cols=138  Identities=14%  Similarity=0.124  Sum_probs=77.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e  112 (267)
                      ....|..|....+|++....    .+..+.+|....... .... ..+|+++++.+..-++ .++++.+. ++   +++|
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRP----SGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYI-VGFYGAFYSDGEISICME   79 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcC----CCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCC-CeEEEEEeeCCEEEEEee
Confidence            35566777778999997543    246677777654321 1111 2368888877754343 34444432 22   8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ...       +-.  ..     +.  .....+..                 .+.+.+..|.+  
T Consensus        80 y~~~~~L~~-------~l~-------~~~--~~-----~~--~~~~~~~~-----------------~i~~~l~~lH~--  117 (308)
T cd06615          80 HMDGGSLDQ-------VLK-------KAG--RI-----PE--NILGKISI-----------------AVLRGLTYLRE--  117 (308)
T ss_pred             ccCCCcHHH-------HHH-------hcC--CC-----CH--HHHHHHHH-----------------HHHHHHHHHHh--
Confidence            999876632       110       000  00     10  11111211                 12223333332  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|+||+++++ +.+.++||..+.
T Consensus       118 -----~~~i~H~dl~p~nil~~~~-~~~~l~dfg~~~  148 (308)
T cd06615         118 -----KHKIMHRDVKPSNILVNSR-GEIKLCDFGVSG  148 (308)
T ss_pred             -----hCCEEECCCChHHEEEecC-CcEEEccCCCcc
Confidence                 1248999999999999874 679999998664

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=97.73  E-value=0.00016  Score=64.08  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~  113 (267)
                      .|..|..+.||++....    .+..+.+|+.....   ....+ ...|..+++.+..+...+.++..+.+  .  +|+||
T Consensus         2 ~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~   77 (327)
T cd05617           2 VIGRGSYAKVLLVRLKK----NDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEY   77 (327)
T ss_pred             eeeeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeC
Confidence            35677788999998643    35778888875421   11111 13566777666665555566665432  2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..              .+.+  ....     +  ......+..                 .+...+..+-+   
T Consensus        78 ~~~~~L~~--------------~~~~--~~~l-----~--~~~~~~~~~-----------------qi~~al~~lH~---  114 (327)
T cd05617          78 VNGGDLMF--------------HMQR--QRKL-----P--EEHARFYAA-----------------EICIALNFLHE---  114 (327)
T ss_pred             CCCCcHHH--------------HHHH--cCCC-----C--HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            99866531              0000  0000     0  111112221                 12223333322   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       115 -----~~ivHrDlkp~Nili~~~-~~~kl~Dfg~~~  144 (327)
T cd05617         115 -----RGIIYRDLKLDNVLLDAD-GHIKLTDYGMCK  144 (327)
T ss_pred             -----CCeeccCCCHHHEEEeCC-CCEEEeccccce
Confidence                 358999999999999874 679999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=97.72  E-value=0.0003  Score=60.75  Aligned_cols=29  Identities=24%  Similarity=0.148  Sum_probs=25.1

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++++ +.+.++||..+.
T Consensus       117 ~ivH~dikp~Nil~~~~-~~~~l~dfg~~~  145 (279)
T cd05633         117 FVVYRDLKPANILLDEH-GHVRISDLGLAC  145 (279)
T ss_pred             CcCCCCCCHHHEEECCC-CCEEEccCCcce
Confidence            38999999999999874 689999999773

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=97.72  E-value=0.00024  Score=61.29  Aligned_cols=137  Identities=14%  Similarity=0.125  Sum_probs=76.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i~  115 (267)
                      ...+..|....+|++....    .+..+++|..............|+..++.+...++. +.+..+  .+.  ++++|++
T Consensus        24 ~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~lv~e~~~   98 (286)
T cd06614          24 LEKIGEGASGEVYKATDRA----TGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIV-DYYDSYLVGDELWVVMEYMD   98 (286)
T ss_pred             hHhccCCCCeEEEEEEEcc----CCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCee-EEEEEEEECCEEEEEEeccC
Confidence            3456777778899998643    357889998754432111123677777777554433 333332  222  8899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       ....        |...      .+. .....+.                 ..+...+..+.      
T Consensus        99 ~~~L~~-------~l~~--------~~~~------l~~-~~~~~i~-----------------~~i~~~L~~lH------  133 (286)
T cd06614          99 GGSLTD-------IITQ--------NFVR------MNE-PQIAYVC-----------------REVLQGLEYLH------  133 (286)
T ss_pred             CCcHHH-------HHHH--------hccC------CCH-HHHHHHH-----------------HHHHHHHHHHH------
Confidence            866642       1110        1100      010 0011111                 11122222332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       134 --~~gi~H~dl~p~ni~i~~~-~~~~l~d~~~~~  164 (286)
T cd06614         134 --SQNVIHRDIKSDNILLSKD-GSVKLADFGFAA  164 (286)
T ss_pred             --hCCeeeCCCChhhEEEcCC-CCEEECccchhh
Confidence              1458999999999999974 689999998664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=97.72  E-value=0.00018  Score=65.18  Aligned_cols=138  Identities=15%  Similarity=0.101  Sum_probs=79.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccc-cChHHHHHHHHHHHhCCCCceEEEEECC--e--e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD--G--R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~  109 (267)
                      ..+..|..|..+.||++....    .+..|.+|+.....   ... .....|..+++.+.... .+++++.+.+  .  +
T Consensus         4 ~~~~~LG~G~~g~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~-iv~l~~~~~~~~~~~l   78 (381)
T cd05626           4 VKIKTLGIGAFGEVCLACKVD----THALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEW-VVKLYYSFQDKDNLYF   78 (381)
T ss_pred             eEEEEEeecCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCC-eeeeEEEEecCCEEEE
Confidence            357778888899999997543    35788999864321   111 11135777776664333 3445555432  2  7


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..              .+.+...  .     +  ......|..+                 +...++.+-
T Consensus        79 v~E~~~gg~L~~--------------~l~~~~~--~-----~--e~~~~~~~~q-----------------i~~aL~~LH  118 (381)
T cd05626          79 VMDYIPGGDMMS--------------LLIRMEV--F-----P--EVLARFYIAE-----------------LTLAIESVH  118 (381)
T ss_pred             EEecCCCCcHHH--------------HHHhcCC--C-----C--HHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999865421              1111000  0     1  0112222221                 222223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.|||++. ++.+.|+||..|.
T Consensus       119 --------~~givHrDlKp~Nili~~-~~~~kL~DFGl~~  149 (381)
T cd05626         119 --------KMGFIHRDIKPDNILIDL-DGHIKLTDFGLCT  149 (381)
T ss_pred             --------hCCeeecCCcHHHEEECC-CCCEEEeeCcCCc
Confidence                    235899999999999987 4689999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=97.72  E-value=0.00027  Score=64.00  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=79.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~  109 (267)
                      ..+..|..|....||++....    .+..+.+|+.....    .......+|..+++.+....+ .+++..+.+  .  +
T Consensus         4 ~~~~~LG~G~~g~Vy~a~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~i-v~~~~~~~~~~~~~l   78 (382)
T cd05625           4 VKIKTLGIGAFGEVCLARKVD----TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWV-VRLYYSFQDKDNLYF   78 (382)
T ss_pred             EEEEEEEeCCCEEEEEEEECC----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcC-CeEEEEEEeCCEEEE
Confidence            357778888889999997543    35778888765321    011112357777776644333 445554432  2  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..              .+.+   ...    .+  ......|..+                 +...++.+-
T Consensus        79 v~E~~~gg~L~~--------------~l~~---~~~----~~--e~~~~~~~~q-----------------i~~al~~lH  118 (382)
T cd05625          79 VMDYIPGGDMMS--------------LLIR---MGI----FP--EDLARFYIAE-----------------LTCAVESVH  118 (382)
T ss_pred             EEeCCCCCcHHH--------------HHHh---cCC----CC--HHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999865421              1111   000    00  1112222222                 122223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       119 --------~~~ivHrDlKp~NILl~~~-g~~kL~DFGla~  149 (382)
T cd05625         119 --------KMGFIHRDIKPDNILIDRD-GHIKLTDFGLCT  149 (382)
T ss_pred             --------hCCeecCCCCHHHEEECCC-CCEEEeECCCCc
Confidence                    1248999999999999874 689999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=97.72  E-value=0.00026  Score=62.78  Aligned_cols=81  Identities=19%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce---eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG---RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~---~v~  111 (267)
                      ...|..|..+.||++...... ...+..+.+|+......  ......+|+.++..+.++.-..++++.+.  ++   +++
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~   91 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIV   91 (338)
T ss_pred             eeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEE
Confidence            456788888999998642100 11245688887654321  11112468888888855543345555432  22   789


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|++|..+.
T Consensus        92 ey~~~g~L~  100 (338)
T cd05102          92 EFCKYGNLS  100 (338)
T ss_pred             ecCCCCcHH
Confidence            999987764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=97.72  E-value=0.00014  Score=61.50  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecCC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHAR  117 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G~  117 (267)
                      |..|..+.+|++..... ++....+.+|....... ... +..+|..+++.+...++. ++++...+.   +++||.+|.
T Consensus         3 ig~g~~~~v~~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05040           3 LGDGSFGVVRRGEWSTS-GGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLI-RLYGVVLTHPLMMVTELAPLG   80 (257)
T ss_pred             CCccCcccEEeeeEecC-CCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCcc-ceeEEEcCCeEEEEEEecCCC
Confidence            56677889999976431 11223578888765433 212 124677887777654443 333333222   788998877


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCC
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQ  197 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  197 (267)
                      ++...       ..          ....  .  .-....+..+..+                 +.+.+..+-        
T Consensus        81 ~L~~~-------l~----------~~~~--~--~~~~~~~~~~~~q-----------------i~~~L~~lH--------  114 (257)
T cd05040          81 SLLDR-------LR----------KDAL--G--HFLISTLCDYAVQ-----------------IANGMRYLE--------  114 (257)
T ss_pred             cHHHH-------HH----------hccc--c--cCcHHHHHHHHHH-----------------HHHHHHHHH--------
Confidence            65321       11          0000  0  0011112222211                 122223332        


Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       115 ~~~i~H~di~p~nil~~~~-~~~kl~dfg~~~  145 (257)
T cd05040         115 SKRFIHRDLAARNILLASD-DKVKIGDFGLMR  145 (257)
T ss_pred             hCCccccccCcccEEEecC-CEEEeccccccc
Confidence            1358999999999999974 679999998664

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=97.71  E-value=4.9e-05  Score=64.99  Aligned_cols=138  Identities=16%  Similarity=0.089  Sum_probs=77.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      ...|..|..+.+|++....    ++..+.+|+.....    ........|.++++.+..+.-.++++..+.+  .  +++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           6 GKIIGEGSFSTVVLAKEKE----TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             eeeecCCCceEEEEEEEcC----CCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            4567777788999998643    35788899875421    1011123567777777623222333333322  2  788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|.+|.++..              .+.+-+.        .. ......+..+                 +...+..|.  
T Consensus        82 e~~~~~~L~~--------------~l~~~~~--------l~-~~~~~~i~~q-----------------l~~~l~~Lh--  119 (280)
T cd05581          82 EYAPNGELLQ--------------YIRKYGS--------LD-EKCTRFYAAE-----------------ILLALEYLH--  119 (280)
T ss_pred             cCCCCCcHHH--------------HHHHcCC--------CC-HHHHHHHHHH-----------------HHHHHHHHH--
Confidence            9988765531              1111110        00 1112222221                 122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ...++|+|++|.||+++++ +.+.++||+.+..
T Consensus       120 ------~~~~~H~dl~~~ni~i~~~-~~~~l~df~~~~~  151 (280)
T cd05581         120 ------SKGIIHRDLKPENILLDKD-MHIKITDFGTAKV  151 (280)
T ss_pred             ------HCCeeecCCCHHHeEECCC-CCEEecCCccccc
Confidence                  1349999999999999874 6899999998763

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=97.71  E-value=6.7e-05  Score=63.65  Aligned_cols=138  Identities=14%  Similarity=0.121  Sum_probs=78.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--c-ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--E-VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -...+..|....+|++....    .+..+.+|+.....  . ... ...+|+++++.+..-++.+ ++....  +.  ++
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~lv   78 (258)
T cd05578           4 LLRVIGKGAFGKVCIVQKRD----TKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVN-LWYSFQDEENMYLV   78 (258)
T ss_pred             EEEEeccCCCceEEEEEEcc----CCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHH-HHHhhcCCCeEEEE
Confidence            35567777788999997542    35788999875421  1 111 1246777777775444433 333222  22  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..          .+    .+-+    +.    . ...+..|..+                 +.+.+..+..
T Consensus        79 ~e~~~~~~L~~----------~l----~~~~----~l----~-~~~~~~~~~~-----------------i~~~l~~lh~  118 (258)
T cd05578          79 VDLLLGGDLRY----------HL----SQKV----KF----S-EEQVKFWICE-----------------IVLALEYLHS  118 (258)
T ss_pred             EeCCCCCCHHH----------HH----HhcC----Cc----C-HHHHHHHHHH-----------------HHHHHHHHHh
Confidence            99999876532          01    0000    00    0 1112222221                 2223333332


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.||+++++ +.+.++||+.+..
T Consensus       119 --------~~i~h~dl~~~nil~~~~-~~~~l~d~~~~~~  149 (258)
T cd05578         119 --------KGIIHRDIKPDNILLDEQ-GHVHITDFNIATK  149 (258)
T ss_pred             --------CCeeccCCCHHHeEEcCC-CCEEEeecccccc
Confidence                    248999999999999874 6899999987754

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=97.71  E-value=0.00026  Score=61.97  Aligned_cols=138  Identities=12%  Similarity=0.071  Sum_probs=77.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ..+..|..|..+.||++....    .+..+++|.......  ......+|+.+++.+...++. +++....  +.  +++
T Consensus         9 ~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~   83 (309)
T cd07872           9 IKLEKLGEGTYATVFKGRSKL----TENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIV-TLHDIVHTDKSLTLVF   83 (309)
T ss_pred             EEEEEecccCCEEEEEEEecC----CCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcc-eEEEEEeeCCeEEEEE
Confidence            456778888889999997542    346788887643221  111224688888777654443 3444432  22  789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++| .+.              ..+.+-+.       ... ......+..                 .+...+..+-  
T Consensus        84 e~~~~-~l~--------------~~~~~~~~-------~~~-~~~~~~~~~-----------------qi~~aL~~lH--  121 (309)
T cd07872          84 EYLDK-DLK--------------QYMDDCGN-------IMS-MHNVKIFLY-----------------QILRGLAYCH--  121 (309)
T ss_pred             eCCCC-CHH--------------HHHHhcCC-------CCC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            98864 111              01111000       001 111221211                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++ +.+.|+||..+.
T Consensus       122 ------~~~ivH~dlkp~Nill~~~-~~~kl~Dfg~~~  152 (309)
T cd07872         122 ------RRKVLHRDLKPQNLLINER-GELKLADFGLAR  152 (309)
T ss_pred             ------HCCeecCCCCHHHEEECCC-CCEEECccccce
Confidence                  2358999999999999874 689999999774

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=97.70  E-value=0.00023  Score=60.45  Aligned_cols=136  Identities=13%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---c-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---V-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      .++..|....+|++....    .+..+++|.......   . ..+...|..++.....+.-.++++..+..+    +++|
T Consensus         2 ~~l~~g~~~~v~~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   77 (260)
T cd05611           2 KPISKGAFGSVYLAKKRS----TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVME   77 (260)
T ss_pred             ccCCcCCCeeEEEEEecC----CCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEe
Confidence            356777788999997532    357888998754211   1 111123333333222333345566555422    8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..       .+.   . +     -.......+..+                 +...+..+..  
T Consensus        78 ~~~~~~L~~-------~l-------~~~---~-~-----~~~~~~~~i~~q-----------------i~~aL~~lH~--  115 (260)
T cd05611          78 YLNGGDCAS-------LI-------KTL---G-G-----LPEDWAKQYIAE-----------------VVLGVEDLHQ--  115 (260)
T ss_pred             ccCCCCHHH-------HH-------HHc---C-C-----CCHHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            999877642       11       000   0 0     001112222211                 2222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       116 ------~~i~H~dl~p~nil~~~~-~~~~l~dfg~~~  145 (260)
T cd05611         116 ------RGIIHRDIKPENLLIDQT-GHLKLTDFGLSR  145 (260)
T ss_pred             ------CCeecCCCCHHHeEECCC-CcEEEeecccce
Confidence                  248999999999999874 679999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.70  E-value=0.00011  Score=62.04  Aligned_cols=140  Identities=11%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e  112 (267)
                      ...+..|....+|++....    ++..+++|......   .......+|+++++.++..++.+ +++... ++   +++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~-~~~~~~~~~~~~lv~e   79 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKS----DSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVT-FFASFQENGRLFIVME   79 (257)
T ss_pred             EEEecCCCcceEEEEEEcC----CCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhh-hhheeccCCeEEEEEe
Confidence            4556777788999998653    35778888764321   11111136888887776544433 344332 22   8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++...              +.+-+..     .  -.......|..+                 +.+.+..+.   
T Consensus        80 ~~~~~~L~~~--------------~~~~~~~-----~--~~~~~~~~~~~~-----------------l~~~l~~lh---  118 (257)
T cd08225          80 YCDGGDLMKR--------------INRQRGV-----L--FSEDQILSWFVQ-----------------ISLGLKHIH---  118 (257)
T ss_pred             cCCCCcHHHH--------------HHhccCC-----C--CCHHHHHHHHHH-----------------HHHHHHHHH---
Confidence            9987665321              1111110     0  011112222221                 122223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ...++|+|++|.||++++++..+.++||..+..
T Consensus       119 -----~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (257)
T cd08225         119 -----DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQ  151 (257)
T ss_pred             -----HCCcccccCCHHHEEEcCCCCeEEecccccchh
Confidence                 224899999999999987534568999987753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=97.70  E-value=0.00038  Score=59.84  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=76.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEECC-e---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~  111 (267)
                      -+..|..|..+.+|++....    .+..+++|......  ... ....+|+.+++.+.. .-.+++++...+ .   +|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           4 KIEKIGEGTYGVVYKGRNKK----TGQIVAMKKIRLESEEEGVPSTAIREISLLKELQH-PNIVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             EeeEecccCceEEEEEEECC----CCcEEEEEEeccccccCCchHHHHHHHHHHHhcCC-CCEeeeEEEEeeCCeEEEEE
Confidence            34567788889999997543    35788888764321  111 112467888777753 223445544432 1   788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++| .+..              .+.+...    ... . ....+..+..+                 +...+..|.  
T Consensus        79 e~~~~-~l~~--------------~~~~~~~----~~~-~-~~~~~~~~~~q-----------------i~~~L~~lH--  118 (285)
T cd07861          79 EFLSM-DLKK--------------YLDSLPK----GQY-M-DAELVKSYLYQ-----------------ILQGILFCH--  118 (285)
T ss_pred             ecCCC-CHHH--------------HHhcCCC----CCc-C-CHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            88875 2210              1111110    000 0 01112222221                 222333332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++++ +.+.|.||..+.
T Consensus       119 ------~~~i~H~dl~p~nil~~~~-~~~~l~dfg~~~  149 (285)
T cd07861         119 ------SRRVLHRDLKPQNLLIDNK-GVIKLADFGLAR  149 (285)
T ss_pred             ------hCCeeecCCCHHHEEEcCC-CcEEECccccee
Confidence                  1248999999999999874 689999998664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=97.70  E-value=0.0002  Score=61.68  Aligned_cols=134  Identities=12%  Similarity=0.035  Sum_probs=72.7

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ..|..+.||++....    .+..|.+|........    ......|.++++.+...++. +++..+.+    .+++||++
T Consensus         2 g~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~-~~~~~~~~~~~~~lv~e~~~   76 (277)
T cd05607           2 GKGGFGEVCAVQVKN----TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIV-NLAYAFESKTHLCLVMSLMN   76 (277)
T ss_pred             CCCCceEEEEEEEcc----CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEE-EEEEEEecCCeEEEEEecCC
Confidence            345567899997543    3578888876432110    00112477888777543333 34433332    28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...       .          +....    ..-....+..+..                 .+...++.+-      
T Consensus        77 g~~L~~~-------~----------~~~~~----~~~~~~~~~~~~~-----------------qi~~al~~lH------  112 (277)
T cd05607          77 GGDLKYH-------I----------YNVGE----RGLEMERVIHYSA-----------------QITCGILHLH------  112 (277)
T ss_pred             CCCHHHH-------H----------Hhccc----cCCCHHHHHHHHH-----------------HHHHHHHHHH------
Confidence            8765310       0          00000    0000111111111                 1222223332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       113 --~~~ivH~dikp~Nili~~~-~~~~l~Dfg~~~  143 (277)
T cd05607         113 --SMDIVYRDMKPENVLLDDQ-GNCRLSDLGLAV  143 (277)
T ss_pred             --HCCEEEccCChHhEEEcCC-CCEEEeeceeee
Confidence              2348999999999999874 679999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.69  E-value=0.00032  Score=59.55  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      +..|..|....+|++...     ++..+.+|..........+..+|..+++.+...++ .+++....+.   ++++|++|
T Consensus        11 ~~~ig~G~~g~v~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05067          11 VKKLGAGQFGEVWMGYYN-----GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRL-VRLYAVVTQEPIYIITEYMEN   84 (260)
T ss_pred             eeeeccCccceEEeeecC-----CCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCe-eeEEEEEccCCcEEEEEcCCC
Confidence            456677878899999743     24789999765433222222478888887764433 3344444322   78898887


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ..          +...  ... .. ......+..                 .+...++.|-       
T Consensus        85 ~~L~~-------~~----------~~~~--~~~-~~-~~~~~~i~~-----------------~i~~al~~LH-------  119 (260)
T cd05067          85 GSLVD-------FL----------KTPE--GIK-LT-INKLIDMAA-----------------QIAEGMAFIE-------  119 (260)
T ss_pred             CCHHH-------HH----------HhcC--CCC-CC-HHHHHHHHH-----------------HHHHHHHHHh-------
Confidence            65531       00          0100  000 01 111111111                 1122223331       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       120 -~~~i~H~dl~p~ni~i~~~-~~~~l~dfg~~~  150 (260)
T cd05067         120 -RKNYIHRDLRAANILVSET-LCCKIADFGLAR  150 (260)
T ss_pred             -cCCeecccccHHhEEEcCC-CCEEEccCccee
Confidence             2348999999999999874 679999998774

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.68  E-value=0.00027  Score=72.13  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=97.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC--CceEEEEE----------C
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ--GPRLLGRF----------G  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl--~P~v~~~~----------~  106 (267)
                      .+..+++-.+|++..+.    +  .+.++++|+++.-.. -+|  =|+++.++|.+.|.  .|.+++..          .
T Consensus       148 ~~r~l~~EQSNTSvi~g----d--~~~~~ilKlfRrl~~-G~N--PdvE~~r~Lteag~~~vP~llG~ve~~~~~~~~~~  218 (1224)
T PRK14705        148 SVKVLSGEQSNTSVIVD----D--GDSAAIVKFFRVLSA-GKN--PEVELGAALTAAGTSEVPATLGWVTGEWDGPASNA  218 (1224)
T ss_pred             CccccccccCceEEEEC----C--CCccEEEEEeeecCC-CCC--ccHHHHHHHhhCCCccCCCccEEEEEeeccccccc
Confidence            34556777788888882    1  124999999975321 233  37788888888876  47776642          1


Q ss_pred             -------C---eeEEEeecCCCC----CcccCC----ChHHHHHHHHHHHhhccCCCCCCCCc----hhHHHHHHHHHHH
Q 024452          107 -------D---GRVEEFIHARTL----SAADIR----DPKISELVAAKMREFHDLKMPGPRKA----LLWDRLRKWVSVA  164 (267)
Q Consensus       107 -------~---~~v~e~i~G~~l----~~~~l~----~~~i~~~la~~La~lH~~~~~~~~~~----~~~~~l~~~~~~~  164 (267)
                             .   +++++||++..=    +-..+.    -...++.||+..|.||.........+    ......+.|...+
T Consensus       219 ~~~~~~~~~tLa~lq~fv~n~gDgW~~tl~~l~r~~~f~~~a~~LG~rtAemH~aLA~~~~~~~f~~~~~~~~~~~~~rL  298 (1224)
T PRK14705        219 GATARAVTGELAVAHEFLAGGLDAWRLAVDAAASGKDFTAEARALGAATATVHRRLAETLGTHDGQEQGPDIAAGVARRV  298 (1224)
T ss_pred             CCccccCceeHHHHHHhhcCCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHHHHH
Confidence                   0   256778875321    000110    02347789999999999743211111    1111134454443


Q ss_pred             hhccCccccccc-chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCC----CCEEEEeecc
Q 024452          165 KSFCSAKDAKEF-CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEET----SSITIIVSFT  227 (267)
Q Consensus       165 ~~~~~~~~~~~~-~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~----~~v~lIDwE~  227 (267)
                      .+.......... ..+.+.+.++.|...   ......=||||+|.|.||+.+++    +...|||||-
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~RIHGD~HLGQVL~t~~D~~~~~~~~IIDFEG  363 (1224)
T PRK14705        299 RGSWAEAGPAVGPYDHALDELLSALDGR---NAGQLQRIHGDLHLGQILQVPGAEGQPERWAILDFEG  363 (1224)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHhcc---CccceEEEecccccccEEEecCCCCccCCEEEEecCC
Confidence            322110000000 112333333333322   22567789999999999997532    3589999995

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=97.68  E-value=0.00032  Score=59.16  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=76.9

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeecC
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIHA  116 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~G  116 (267)
                      ..+..|....+|++....    .+..+++|....... ..+..+|+++++.+...++. ++++.+.+    .++++|++|
T Consensus         9 ~~i~~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i~-~~~~~~~~~~~~~l~~e~~~~   82 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKE----TGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYIV-KYYGSYFKNTDLWIVMEYCGA   82 (256)
T ss_pred             hhhcCCCCeEEEEEEEcC----CCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcEe-eeeeeeecCCcEEEEEecCCC
Confidence            345667778999997643    247888998754322 22234788888887443433 34544322    278999888


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ...          ....   . .+ ...+..+..                 .+...+..+..      
T Consensus        83 ~~L~~-------~l~----------~~~~---~-l~-~~~~~~~~~-----------------~l~~~l~~lh~------  117 (256)
T cd06612          83 GSVSD-------IMK----------ITNK---T-LT-EEEIAAILY-----------------QTLKGLEYLHS------  117 (256)
T ss_pred             CcHHH-------HHH----------hCcc---C-CC-HHHHHHHHH-----------------HHHHHHHHHHH------
Confidence            66532       110          0000   0 00 111111211                 12222233321      


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ..++|+|++|+||+++++ +.+.|.||..+.
T Consensus       118 --~~i~H~dl~~~ni~~~~~-~~~~l~dfg~~~  147 (256)
T cd06612         118 --NKKIHRDIKAGNILLNEE-GQAKLADFGVSG  147 (256)
T ss_pred             --CCcccCCCCcceEEECCC-CcEEEcccccch
Confidence              247999999999999874 679999998665

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.67  E-value=0.00087  Score=66.92  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccCh-HHHHHHHHHHHhCCCCceEEEEEC-C-e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFNR-DDEIRTFECMSSQGQGPRLLGRFG-D-G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~-~-~--~v  110 (267)
                      -+..|..|..+.||++....    .+..+.+|.......   ....+ .+|+.+++.+...++.+ ++.... + .  ++
T Consensus         6 Ii~~LGkGgfG~VYlA~d~~----tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVk-l~~v~~d~~~lyLV   80 (932)
T PRK13184          6 IIRLIGKGGMGEVYLAYDPV----CSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVP-VYSICSDGDPVYYT   80 (932)
T ss_pred             EEEEEecCCCEEEEEEEECC----CCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCe-EEEEEeeCCEEEEE
Confidence            35667778889999997543    357888987654321   11111 36777777776545443 444433 2 2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccC-CCCCC-CCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDL-KMPGP-RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~-~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      ++|++|.++..       +.       ...... ..+.. ........+..+.                 ..+...++.+
T Consensus        81 MEY~eGGSL~~-------lL-------~s~~~~~~l~e~~~~~lsv~~iL~I~-----------------~QIa~AL~yL  129 (932)
T PRK13184         81 MPYIEGYTLKS-------LL-------KSVWQKESLSKELAEKTSVGAFLSIF-----------------HKICATIEYV  129 (932)
T ss_pred             EEcCCCCCHHH-------HH-------HHhhhccccchhhhcccCHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876642       11       111110 00000 0000001111111                 1122222333


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -        ...++|+|++|.||+++.+ +.+.++||..|.
T Consensus       130 H--------s~GIIHRDLKPeNILLd~d-g~vKLiDFGLAk  161 (932)
T PRK13184        130 H--------SKGVLHRDLKPDNILLGLF-GEVVILDWGAAI  161 (932)
T ss_pred             H--------HCCccccCCchheEEEcCC-CCEEEEecCcce
Confidence            2        2358999999999999874 679999999775

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=97.67  E-value=0.00023  Score=63.22  Aligned_cols=138  Identities=13%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e  112 (267)
                      ..+.|..|....||++....    .+..+.+|+...... .. ....+|+++++.+...++.+ +++.+. ++   ++++
T Consensus         9 ~~~~lg~g~~g~V~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e   83 (333)
T cd06650           9 KISELGAGNGGVVFKVSHKP----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVG-FYGAFYSDGEISICME   83 (333)
T ss_pred             eeccccCCCCEEEEEEEECC----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccc-eeEEEEECCEEEEEEe
Confidence            35566778788999997543    346677776543321 11 11247888888886544443 444432 22   8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..       .+ +. ..     +  ...+..+..                 .+...+..+-.  
T Consensus        84 ~~~~~~L~~-------~l-------~~-~~-~~-----~--~~~~~~~~~-----------------~l~~~l~~lH~--  121 (333)
T cd06650          84 HMDGGSLDQ-------VL-------KK-AG-RI-----P--EQILGKVSI-----------------AVIKGLTYLRE--  121 (333)
T ss_pred             cCCCCcHHH-------HH-------HH-cC-CC-----C--HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            999866532       11       00 00 00     0  011111111                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|+|||++++ +.+.|+||..+.
T Consensus       122 -----~~~ivH~dlkp~Nili~~~-~~~kL~Dfg~~~  152 (333)
T cd06650         122 -----KHKIMHRDVKPSNILVNSR-GEIKLCDFGVSG  152 (333)
T ss_pred             -----cCCEEecCCChhhEEEcCC-CCEEEeeCCcch
Confidence                 1248999999999999874 679999998764

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=97.67  E-value=0.00027  Score=61.13  Aligned_cols=80  Identities=13%  Similarity=0.069  Sum_probs=46.1

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      ...+..|..+.+|++...... ...+..+.+|.......... +..+|.++++.+...++ +++++.+..+    ++++|
T Consensus        10 ~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~   88 (288)
T cd05093          10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHI-VKFYGVCVEGDPLIMVFEY   88 (288)
T ss_pred             ccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCc-ceEEEEEecCCccEEEEEc
Confidence            444567778899999742211 11234577777654332211 22468888887754444 4455544322    88999


Q ss_pred             ecCCCCC
Q 024452          114 IHARTLS  120 (267)
Q Consensus       114 i~G~~l~  120 (267)
                      ++|.++.
T Consensus        89 ~~~~~L~   95 (288)
T cd05093          89 MKHGDLN   95 (288)
T ss_pred             CCCCCHH
Confidence            9887663

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=97.67  E-value=0.00033  Score=59.19  Aligned_cols=140  Identities=14%  Similarity=0.038  Sum_probs=77.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..+..|..+.+|.+....    ++..+++|.....   .....+..+|+++++.+...++ .+++..+.  +.  +++
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-~~~~~~~~~~~~~~~~~   78 (256)
T cd08221           4 PIRVLGKGAFGEATLYRRTE----DDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNI-IAYYNHFMDDNTLLIEM   78 (256)
T ss_pred             EeeEecccCCceEEEEEEcC----CCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCe-eEEEeEEecCCeEEEEE
Confidence            45667778778888887543    3578888865422   1111122478888887754343 33444433  22  779


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..              .+.+   ..  ... .. ...+..+..                 .+...+..+.  
T Consensus        79 e~~~~~~L~~--------------~~~~---~~--~~~-~~-~~~~~~~~~-----------------~l~~~l~~lh--  118 (256)
T cd08221          79 EYANGGTLYD--------------KIVR---QK--GQL-FE-EEMVLWYLF-----------------QIVSAVSYIH--  118 (256)
T ss_pred             EecCCCcHHH--------------HHHh---cc--ccC-CC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9998765531              1111   00  000 01 111111211                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ...++|+|++|+||+++++ +.+.|.||+.+..
T Consensus       119 ------~~~i~h~dl~p~ni~~~~~-~~~kl~d~~~~~~  150 (256)
T cd08221         119 ------KAGILHRDIKTLNIFLTKA-GLIKLGDFGISKI  150 (256)
T ss_pred             ------hCCccccCCChHhEEEeCC-CCEEECcCcceEE
Confidence                  2248999999999999974 6799999997753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=97.66  E-value=0.0011  Score=56.75  Aligned_cols=131  Identities=17%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeecCCC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIHART  118 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~G~~  118 (267)
                      +..|..+.+|++....    .+..+++|+.....  ..  ..|......+.++.-.++++..+.  +.  +|+||++|.+
T Consensus        24 lg~g~~g~v~~~~~~~----~~~~~~~k~~~~~~--~~--~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~   95 (267)
T PHA03390         24 LIDGKFGKVSVLKHKP----TQKLFVQKIIKAKN--FN--AIEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGD   95 (267)
T ss_pred             ecCCCceEEEEEEEcC----CCcEEEEEEEehhh--cc--hhhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCc
Confidence            6788889999997543    35789999875431  11  124444444444444456665543  22  8899999865


Q ss_pred             CCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCc
Q 024452          119 LSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQE  198 (267)
Q Consensus       119 l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~  198 (267)
                      +..          .+       +... +     -....+..+..+                 +...+..+-+        
T Consensus        96 L~~----------~l-------~~~~-~-----l~~~~~~~~~~q-----------------i~~~l~~lH~--------  127 (267)
T PHA03390         96 LFD----------LL-------KKEG-K-----LSEAEVKKIIRQ-----------------LVEALNDLHK--------  127 (267)
T ss_pred             HHH----------HH-------HhcC-C-----CCHHHHHHHHHH-----------------HHHHHHHHHh--------
Confidence            532          01       0000 0     001122222221                 1222233321        


Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|++|.||+++.+++.+.++||+.+.
T Consensus       128 ~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390        128 HNIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             CCeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence            2389999999999999753379999998663

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.66  E-value=0.00045  Score=59.34  Aligned_cols=136  Identities=12%  Similarity=0.080  Sum_probs=74.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cccc-ChHHHHHHHHHHHhCCCCceEEEEEC-C---eeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG-D---GRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~-~---~~v~e  112 (267)
                      .+..|..|..+.+|++....    .+..+.+|+..... .... +-.+|+.+++.+...++. ++++... +   .+|+|
T Consensus         8 ~~~~ig~G~~~~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           8 KLEKIGKGSFGEVFKGIDNR----TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT-KYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hheeEeecCCeEEEEEEECC----CCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEe-EEEEEEEeCCeEEEEEE
Confidence            34567778788999986432    35788899865322 1111 113566666666443333 3343332 2   28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..          +...      .+ ......+..                 .+...+..+    
T Consensus        83 ~~~~~~l~~-------~i----------~~~~------~~-~~~~~~~~~-----------------~l~~~l~~l----  117 (277)
T cd06641          83 YLGGGSALD-------LL----------EPGP------LD-ETQIATILR-----------------EILKGLDYL----  117 (277)
T ss_pred             eCCCCcHHH-------HH----------hcCC------CC-HHHHHHHHH-----------------HHHHHHHHH----
Confidence            998865532       01          0100      01 111111111                 111222222    


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          +...++|+|++|+||+++.+ +.+.++||+.+.
T Consensus       118 ----h~~~i~h~dl~p~Ni~i~~~-~~~~l~dfg~~~  149 (277)
T cd06641         118 ----HSEKKIHRDIKAANVLLSEH-GEVKLADFGVAG  149 (277)
T ss_pred             ----ccCCeecCCCCHHhEEECCC-CCEEEeecccce
Confidence                22468999999999999874 679999998663

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=97.65  E-value=0.00043  Score=58.63  Aligned_cols=135  Identities=16%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEE-E-CC---eeEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGR-F-GD---GRVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~-~-~~---~~v~e~i  114 (267)
                      ...+..|..+.+|++...      +..+++|....... ..+-.+|+.+++.+...++.+ .++. . .+   .+++||+
T Consensus        11 ~~~lg~g~~~~v~~~~~~------~~~~~~k~~~~~~~-~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082          11 LQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDAT-AQAFLAEASVMTQLRHSNLVQ-LLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             eeeecccCCCeEEEEEEc------CCcEEEEEeCCCch-HHHHHHHHHHHHhCCCCCeee-EEEEEEcCCCceEEEEECC
Confidence            455666767899998743      46788888754321 111236888888775544444 3332 2 22   2789999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++...              +   +....  .  .-.......+..                 .+...+..+-     
T Consensus        83 ~~~~L~~~--------------~---~~~~~--~--~~~~~~~~~~~~-----------------~i~~~l~~lH-----  119 (256)
T cd05082          83 AKGSLVDY--------------L---RSRGR--S--VLGGDCLLKFSL-----------------DVCEAMEYLE-----  119 (256)
T ss_pred             CCCcHHHH--------------H---HhcCC--C--CCCHHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            88655321              0   01000  0  000111111211                 1122222332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       120 ---~~~i~H~dlkp~nil~~~~-~~~kl~dfg~~~  150 (256)
T cd05082         120 ---ANNFVHRDLAARNVLVSED-NVAKVSDFGLTK  150 (256)
T ss_pred             ---hCCEeccccchheEEEcCC-CcEEecCCccce
Confidence               2348999999999999874 689999998765

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.65  E-value=0.00044  Score=59.53  Aligned_cols=140  Identities=15%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC----Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG----DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~~--~v  110 (267)
                      .+..|..|..+.||.+.........+..+.+|.......  ......+|+++++.+...++. ++++...    .+  ++
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIV-KYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEe-eEEEEEecCCCceEEEE
Confidence            456677777888988653211112356788898754321  111113688888877544443 3444321    12  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ..          +....      . ......+..                 .+...++.+- 
T Consensus        87 ~e~~~~~~l~~-------~~----------~~~~l------~-~~~~~~i~~-----------------~l~~~l~~lH-  124 (283)
T cd05080          87 MEYVPLGSLRD-------YL----------PKHKL------N-LAQLLLFAQ-----------------QICEGMAYLH-  124 (283)
T ss_pred             ecCCCCCCHHH-------HH----------HHcCC------C-HHHHHHHHH-----------------HHHHHHHHHH-
Confidence            89988776532       11          00000      0 111222221                 1222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++++ +.+.+.||+.+.
T Consensus       125 -------~~~i~H~dlkp~Nili~~~-~~~~l~dfg~~~  155 (283)
T cd05080         125 -------SQHYIHRDLAARNVLLDND-RLVKIGDFGLAK  155 (283)
T ss_pred             -------HCCeeccccChheEEEcCC-CcEEEeeccccc
Confidence                   2259999999999999874 678999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=97.65  E-value=0.00023  Score=60.51  Aligned_cols=133  Identities=13%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i~  115 (267)
                      ..|..+.+|++....    .+..+++|+......   ... ...+|..+++.+..-++ ++++....++    ++++|.+
T Consensus         2 g~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~~   76 (262)
T cd05572           2 GVGGFGRVELVKVKS----KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFI-VKLYRTFKDKKYIYMLMEYCL   76 (262)
T ss_pred             CCCCceEEEEEEECC----CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCE-eeeeeeEEcCCccEEEEecCC
Confidence            445567899998643    357899998754321   111 11356677766643333 3344443322    8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...              +.+-..  .      . ...+..+..                 .+...+..+-      
T Consensus        77 ~~~L~~~--------------l~~~~~--l------~-~~~~~~~~~-----------------~i~~~l~~lH------  110 (262)
T cd05572          77 GGELWTI--------------LRDRGL--F------D-EYTARFYIA-----------------CVVLAFEYLH------  110 (262)
T ss_pred             CCcHHHH--------------HhhcCC--C------C-HHHHHHHHH-----------------HHHHHHHHHh------
Confidence            7655321              000000  0      0 011111211                 1222222332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        ...++|+|+++.||+++++ +.+.++||+.+..
T Consensus       111 --~~~~~h~dl~~~nilv~~~-~~~~l~df~~~~~  142 (262)
T cd05572         111 --NRGIIYRDLKPENLLLDSN-GYVKLVDFGFAKK  142 (262)
T ss_pred             --hCCcccCCCCHHHEEEcCC-CCEEEeeCCcccc
Confidence              2458999999999999874 6899999998764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=97.65  E-value=0.00045  Score=58.63  Aligned_cols=137  Identities=16%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC---eeEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~i~G  116 (267)
                      +..+..|..+.+|++....     +..+++|..........+-.+|+.+++.+...++.+ ++.....   .++++|++|
T Consensus        11 ~~~ig~g~~~~v~~~~~~~-----~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~-~~~~~~~~~~~lv~e~~~~   84 (260)
T cd05070          11 IKKLGNGQFGEVWMGTWNG-----NTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQ-LYAVVSEEPIYIVTEYMSK   84 (260)
T ss_pred             hheeccccCceEEEEEecC-----CceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEE-EEeEECCCCcEEEEEecCC
Confidence            4556777778999997532     467888887653221112247888888876555433 3333332   288999987


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++...       .          +...  ... .. ......+..                 .+...+..|-+      
T Consensus        85 ~~L~~~-------~----------~~~~--~~~-~~-~~~~~~~~~-----------------~l~~al~~lH~------  120 (260)
T cd05070          85 GSLLDF-------L----------KDGE--GRA-LK-LPNLVDMAA-----------------QVAAGMAYIER------  120 (260)
T ss_pred             CcHHHH-------H----------HhcC--CCC-CC-HHHHHHHHH-----------------HHHHHHHHHHH------
Confidence            655320       0          0100  000 01 111222221                 12223333322      


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ..++|+|++|.||++++ ++.+.++||+.+.
T Consensus       121 --~~i~H~di~p~Nili~~-~~~~~l~dfg~~~  150 (260)
T cd05070         121 --MNYIHRDLRSANILVGD-GLVCKIADFGLAR  150 (260)
T ss_pred             --CCcccCCCccceEEEeC-CceEEeCCceeee
Confidence              24899999999999987 4678899999874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=97.64  E-value=0.00025  Score=60.93  Aligned_cols=137  Identities=16%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      ...|..|..+.+|++....    .+..+++|......  ... .+..+|+.+++.+.... .++++....+  .  +|++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           5 LGRIGEGAHGIVFKAKDRE----TGETVALKKVALRRLEGGIPNQALREIKALQACQHPY-VVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             EeecccCCCcEEEEEEECC----CCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCC-CcceeeEEecCCeeEEEec
Confidence            3556778888999997543    35788888875432  111 12246777777776323 3445554432  2  7889


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |+ |.++...              +   +....+    .. ......+..                 .+...+..+..  
T Consensus        80 ~~-~~~L~~~--------------~---~~~~~~----~~-~~~~~~~~~-----------------~i~~~l~~lH~--  117 (286)
T cd07832          80 YM-PSDLSEV--------------L---RDEERP----LP-EAQVKSYMR-----------------MLLKGVAYMHA--  117 (286)
T ss_pred             cc-CCCHHHH--------------H---HhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            88 7555320              0   000000    00 111222221                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ..++|+|++|.||++++ .+.+.++||+.+..
T Consensus       118 ------~~i~H~dl~p~ni~~~~-~~~~~l~dfg~~~~  148 (286)
T cd07832         118 ------NGIMHRDLKPANLLISA-DGVLKIADFGLARL  148 (286)
T ss_pred             ------CCeecCCcCHHHEEEcC-CCcEEEeeeeeccc
Confidence                  24899999999999997 46799999987653

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=97.64  E-value=0.00052  Score=59.36  Aligned_cols=139  Identities=14%  Similarity=0.036  Sum_probs=77.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-c--c-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-E--V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~--~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      .+..|..|..+.||++....    .+..+.+|+..... .  . ...-.+|+.+++.+....+.+ .+..+.  +.  ++
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~lv   78 (285)
T cd05605           4 HYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVS-LAYAYETKDALCLV   78 (285)
T ss_pred             EEEEEecCCCeEEEEEEEcC----CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEee-eeeeecCCCeEEEE
Confidence            34567778789999997542    35778888765321 1  0 011135788888775544433 343333  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+...       .       .+......     +  ......+..                 .+...+..+-+
T Consensus        79 ~e~~~~~~L~~~-------~-------~~~~~~~~-----~--~~~~~~~~~-----------------qi~~~l~~lH~  120 (285)
T cd05605          79 LTLMNGGDLKFH-------I-------YNMGNPGF-----D--EERAVFYAA-----------------EITCGLEDLHR  120 (285)
T ss_pred             EeccCCCcHHHH-------H-------HhcCcCCC-----C--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            999998665310       0       00000000     0  111111111                 12222333322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       121 --------~~ivH~dlkp~Nil~~~~-~~~~l~Dfg~~~  150 (285)
T cd05605         121 --------ERIVYRDLKPENILLDDY-GHIRISDLGLAV  150 (285)
T ss_pred             --------CCcEecCCCHHHEEECCC-CCEEEeeCCCce
Confidence                    248999999999999874 679999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.00041  Score=62.02  Aligned_cols=140  Identities=18%  Similarity=0.244  Sum_probs=88.0

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---------------------------hHHHHHHHHHHHhC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---------------------------RDDEIRTFECMSSQ   95 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---------------------------r~~E~~~~~~l~~~   95 (267)
                      |+.|=...||.++..     ++..+.+|||....-.|-|                           .+.|.+-++.+.+.
T Consensus       152 iSTGKEANVYHat~~-----dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  152 ISTGKEANVYHATEE-----DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             cccCccceeEeeecC-----CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            456777889998643     3577899998543211222                           14588889999999


Q ss_pred             CC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccccc
Q 024452           96 GQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAK  174 (267)
Q Consensus        96 gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  174 (267)
                      |+ +|+++..-..-+||+||.+.-.....|.+.++.                       ...++.++.++          
T Consensus       227 GIP~PePIlLk~hVLVM~FlGrdgw~aPkLKd~~ls-----------------------~~ka~~~Y~~~----------  273 (520)
T KOG2270|consen  227 GIPCPEPILLKNHVLVMEFLGRDGWAAPKLKDASLS-----------------------TSKARELYQQC----------  273 (520)
T ss_pred             CCCCCCceeeecceEeeeeccCCCCcCcccccccCC-----------------------hHHHHHHHHHH----------
Confidence            97 599998877779999997544444444442110                       01122222221          


Q ss_pred             ccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHH
Q 024452          175 EFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFK  236 (267)
Q Consensus       175 ~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD  236 (267)
                             ...+..|.       ....|+|+||.--|+|+.+  |.+.+||---+--  +|-++|
T Consensus       274 -------v~~MR~lY-------~~c~LVHADLSEfN~Lyhd--G~lyiIDVSQSVE~DHP~ald  321 (520)
T KOG2270|consen  274 -------VRIMRRLY-------QKCRLVHADLSEFNLLYHD--GKLYIIDVSQSVEHDHPHALD  321 (520)
T ss_pred             -------HHHHHHHH-------HHhceeccchhhhhheEEC--CEEEEEEccccccCCChhHHH
Confidence                   11222232       2245999999999999994  6899999765532  555555

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=97.63  E-value=0.00061  Score=59.32  Aligned_cols=138  Identities=13%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ..+..|..|..+.+|++....    .+..+++|.......  ......+|+.+++.+...++. +++....  +.  +++
T Consensus         9 ~~~~~lg~g~~g~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~-~~~~~~~~~~~~~lv~   83 (301)
T cd07873           9 IKLDKLGEGTYATVYKGRSKL----TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIV-TLHDIIHTEKSLTLVF   83 (301)
T ss_pred             EEeeEeccCcCEEEEEEEEcC----CCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcc-eEEEEEecCCeEEEEE
Confidence            346677888889999997543    346788887643221  111224688888877654443 3444443  22  788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++| ++.              ..+   +.....    .. ...+..+..                 .+...++.+-  
T Consensus        84 e~~~~-~l~--------------~~l---~~~~~~----~~-~~~~~~~~~-----------------qi~~aL~~lH--  121 (301)
T cd07873          84 EYLDK-DLK--------------QYL---DDCGNS----IN-MHNVKLFLF-----------------QLLRGLNYCH--  121 (301)
T ss_pred             ecccc-CHH--------------HHH---HhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            88775 111              001   111000    01 111222221                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++ +.+.|+||..+.
T Consensus       122 ------~~~i~H~dlkp~Nil~~~~-~~~kl~dfg~~~  152 (301)
T cd07873         122 ------RRKVLHRDLKPQNLLINER-GELKLADFGLAR  152 (301)
T ss_pred             ------hCCeeCCCCCHHHEEECCC-CcEEECcCcchh
Confidence                  2358999999999999874 689999998764

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=97.63  E-value=0.0003  Score=68.01  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++-++|+||+..|||+..+ +..+|-||.-|+-
T Consensus       164 ~pPiIHRDLKiENvLls~~-g~~KLCDFGSatt  195 (738)
T KOG1989|consen  164 KPPIIHRDLKIENVLLSAD-GNYKLCDFGSATT  195 (738)
T ss_pred             CCccchhhhhhhheEEcCC-CCEEeCccccccc
Confidence            3459999999999999974 6899999998875

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=97.63  E-value=0.00043  Score=58.34  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=75.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEEC-C-e--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFG-D-G--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~-~--~v~e  112 (267)
                      ...+..|....+|++....    ++..+++|......   ........|+.+++.+...++.+ .+..+. + .  +++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~lv~e   79 (256)
T cd08529           5 LNKIGKGSFGVVFKVVRKA----DKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIR-YYESFLDKGKLNIVME   79 (256)
T ss_pred             eEEecCCCCeEEEEEEEcC----CCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeeh-heeeeccCCEEEEEEE
Confidence            3456777778999998643    35788888764321   11111135667676665434333 333332 2 2  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ...          ...  ... .. ...+..+..                 .+...+..+.   
T Consensus        80 ~~~~~~L~~-------~l~----------~~~--~~~-~~-~~~~~~i~~-----------------~l~~al~~lH---  118 (256)
T cd08529          80 YAENGDLHK-------LLK----------MQR--GRP-LP-EDQVWRFFI-----------------QILLGLAHLH---  118 (256)
T ss_pred             eCCCCcHHH-------HHH----------Hhc--CCC-CC-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            999876532       111          100  000 01 011111111                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       119 -----~~~i~h~dl~~~nili~~~-~~~~l~df~~~~  149 (256)
T cd08529         119 -----SKKILHRDIKSLNLFLDAY-DNVKIGDLGVAK  149 (256)
T ss_pred             -----HCCcccCCCCcceEEEeCC-CCEEEcccccce
Confidence                 2369999999999999974 689999998654

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=97.62  E-value=0.00019  Score=63.40  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       116 giiHrDlkp~Nili~~~-~~~kl~DfG~a~  144 (325)
T cd05602         116 NIVYRDLKPENILLDSQ-GHIVLTDFGLCK  144 (325)
T ss_pred             CeEecCCCHHHeEECCC-CCEEEccCCCCc
Confidence            59999999999999874 689999998764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=97.62  E-value=0.00038  Score=61.73  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--c-ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--E-VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....  . ... ....|..++..+... ..+.++..+.  +.  +|
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~-~i~~~~~~~~~~~~~~lv   79 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKN----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQ-WITTLHYAFQDENNLYLV   79 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECC----CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCC-CEeeEEEEEecCCEEEEE
Confidence            45677888889999998653    35778888864311  0 000 012344444433222 2233444432  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       .       +.+... ..     +  ......|..+                 +...++.+-+
T Consensus        80 ~ey~~~g~L~~-------~-------l~~~~~-~l-----~--~~~~~~~~~q-----------------i~~al~~lH~  120 (332)
T cd05623          80 MDYYVGGDLLT-------L-------LSKFED-RL-----P--EDMARFYLAE-----------------MVIAIDSVHQ  120 (332)
T ss_pred             EeccCCCcHHH-------H-------HHHhcC-CC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99998865532       1       111100 00     0  1112222221                 2222233321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                              ..++|+|++|.||+++.+ +.+.|+||..|
T Consensus       121 --------~~iiHrDlkp~Nili~~~-~~~kL~DfG~a  149 (332)
T cd05623         121 --------LHYVHRDIKPDNILMDMN-GHIRLADFGSC  149 (332)
T ss_pred             --------CCeEecCCCHHHEEECCC-CCEEEeecchh
Confidence                    348999999999999864 68999999976

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=97.62  E-value=0.00025  Score=60.96  Aligned_cols=134  Identities=13%  Similarity=0.031  Sum_probs=72.7

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---c-ccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---V-FFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i~  115 (267)
                      ..|.-+.+|++....    .+..+.+|+......   . ...-..|..+++.++ +...++.+..+. .+   +|++|++
T Consensus         2 g~g~~g~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~lv~e~~~   76 (277)
T cd05577           2 GKGGFGEVCACQVKA----TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVS-SRFIVSLAYAFETKDDLCLVMTLMN   76 (277)
T ss_pred             CCCCceeEEEEEEcC----CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCC-CCCEeeeeeEEecCCeEEEEEecCC
Confidence            456667899987543    357888898754211   0 111135777777775 333333444432 22   8899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...       .       .   ....  .  .-....+..+..+                 +...+..+..     
T Consensus        77 ~~~L~~~-------l-------~---~~~~--~--~~~~~~~~~~~~q-----------------l~~~l~~lH~-----  113 (277)
T cd05577          77 GGDLKYH-------I-------Y---NVGE--P--GFPEARAIFYAAQ-----------------IICGLEHLHQ-----  113 (277)
T ss_pred             CCcHHHH-------H-------H---HcCc--C--CCCHHHHHHHHHH-----------------HHHHHHHHHh-----
Confidence            8665320       1       0   0000  0  0001111112211                 1222233321     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|+||+++++ +.+.++||..+.
T Consensus       114 ---~~i~H~di~p~Nil~~~~-~~~~l~dfg~~~  143 (277)
T cd05577         114 ---RRIVYRDLKPENVLLDDH-GNVRISDLGLAV  143 (277)
T ss_pred             ---CCcccCCCCHHHEEECCC-CCEEEccCcchh
Confidence               248999999999999874 689999998663

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=97.61  E-value=0.00055  Score=59.05  Aligned_cols=159  Identities=14%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             HHHHHHhC-CCCCCCCCCC----CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc--c-ChHHHHHH
Q 024452           18 KKVLQSVA-SDWGDVIDDS----DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF--F-NRDDEIRT   88 (267)
Q Consensus        18 ~~l~~~~~-p~w~~~~~~~----~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~--~-dr~~E~~~   88 (267)
                      .+.+++.+ ..|...++.+    +.-.+.-+..|-=..|..|....    .+.-|.+|+-....- .+  + -..+|..+
T Consensus        22 l~~~~~~~~~~~~~~~~~~~~l~dfe~~~tlGtGSFGrV~LVr~k~----~g~yYAmKvL~k~~vVklKQveH~~nEk~v   97 (355)
T KOG0616|consen   22 LDKAREDFPKKWANTPQNPYSLQDFERLKTLGTGSFGRVHLVREKH----SGNYYAMKVLDKQKVVKLKQVEHTHNEKRV   97 (355)
T ss_pred             HHHHHHhhhhhhcCCCCCCcchhhhhheeeeccCccceEEEEEEcc----CCceeehhhcCHHHHHHHHHHHHHhhHHHH
Confidence            33333334 4577544321    11245556677778899988643    357788888765420 00  0 01256677


Q ss_pred             HHHHHhCCCCceEEEEECCe----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHH
Q 024452           89 FECMSSQGQGPRLLGRFGDG----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVA  164 (267)
Q Consensus        89 ~~~l~~~gl~P~v~~~~~~~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~  164 (267)
                      ++.+. +-..-++++.+.++    +|++|++|..+-.              .|++-++.+          +...+|+.. 
T Consensus        98 L~~v~-~PFlv~l~~t~~d~~~lymvmeyv~GGElFS--------------~Lrk~~rF~----------e~~arFYAA-  151 (355)
T KOG0616|consen   98 LKAVS-HPFLVKLYGTFKDNSNLYMVMEYVPGGELFS--------------YLRKSGRFS----------EPHARFYAA-  151 (355)
T ss_pred             Hhhcc-CceeEEEEEeeccCCeEEEEEeccCCccHHH--------------HHHhcCCCC----------chhHHHHHH-
Confidence            76665 43445566666543    8999999865532              111211111          123344431 


Q ss_pred             hhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          165 KSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                                     .+.-.++.|        +...++++|++|.|||++.+ |-+.|+||.||..
T Consensus       152 ---------------eivlAleyl--------H~~~iiYRDLKPENiLlD~~-G~iKitDFGFAK~  193 (355)
T KOG0616|consen  152 ---------------EIVLALEYL--------HSLDIIYRDLKPENLLLDQN-GHIKITDFGFAKR  193 (355)
T ss_pred             ---------------HHHHHHHHH--------HhcCeeeccCChHHeeeccC-CcEEEEeccceEE
Confidence                           112233343        23448999999999999984 7899999999864

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=97.61  E-value=0.00025  Score=59.85  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc------cccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE------VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~------~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      ..|..|....+|++....    ++..+++|.......      .......|+++++.+...++ .+.++...+  .  ++
T Consensus         6 ~~ig~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-~~~~~~~~~~~~~~lv   80 (258)
T cd06632           6 ELLGSGSFGSVYEGLNLD----DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI-VQYLGTEREEDNLYIF   80 (258)
T ss_pred             ceeeecCCceEEEEEEcC----CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCc-hheeeeEecCCeEEEE
Confidence            346667678999987542    357888887643211      11112367777776654443 334444432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       .       +.+.+.        .. ...+..+..                 .+...+..+.+
T Consensus        81 ~e~~~~~~L~~-------~-------~~~~~~--------~~-~~~~~~~~~-----------------~i~~~l~~lH~  120 (258)
T cd06632          81 LELVPGGSLAK-------L-------LKKYGS--------FP-EPVIRLYTR-----------------QILLGLEYLHD  120 (258)
T ss_pred             EEecCCCcHHH-------H-------HHhcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865532       1       111100        00 111111221                 12222233321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+||+++++ +.+.|+||..+.
T Consensus       121 --------~~i~H~dl~~~ni~~~~~-~~~kl~d~~~~~  150 (258)
T cd06632         121 --------RNTVHRDIKGANILVDTN-GVVKLADFGMAK  150 (258)
T ss_pred             --------CCcccCCCCHHHEEECCC-CCEEEccCccce
Confidence                    248999999999999874 689999998664

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=97.61  E-value=0.00048  Score=59.53  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccC-hHHHHHHHHHHHhCCCCceEEEEEC-Ce---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFN-RDDEIRTFECMSSQGQGPRLLGRFG-DG---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v  110 (267)
                      ...+..|..+.+|.+..... ...+..+.+|+......    .... ...|+++++.+..+...+.++..+. ++   ++
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~-~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSG-HDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLI   83 (290)
T ss_pred             eeeeccCCcceEEEEEeccC-CCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEE
Confidence            35567777889999875311 11357888998754221    0111 1367888888876655555555543 22   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ..       .+   . .+     -....+..+..                 .+...+..+-+
T Consensus        84 ~e~~~~~~L~~-------~l-------~~---~-~~-----l~~~~~~~~~~-----------------qi~~al~~lH~  123 (290)
T cd05613          84 LDYINGGELFT-------HL-------SQ---R-ER-----FKEQEVQIYSG-----------------EIVLALEHLHK  123 (290)
T ss_pred             EecCCCCcHHH-------HH-------HH---c-CC-----CCHHHHHHHHH-----------------HHHHHHHHHHh
Confidence            99999865431       01       00   0 00     00111222211                 12222333321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       124 --------~~i~H~dl~p~nil~~~~-~~~kl~dfg~~~  153 (290)
T cd05613         124 --------LGIIYRDIKLENILLDSN-GHVVLTDFGLSK  153 (290)
T ss_pred             --------CCeeccCCCHHHeEECCC-CCEEEeeCccce
Confidence                    348999999999999874 689999998653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=97.61  E-value=0.00023  Score=62.93  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=25.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       116 givH~Dlkp~NIll~~~-~~~kL~DfG~~~  144 (325)
T cd05604         116 NIVYRDLKPENILLDSQ-GHVVLTDFGLCK  144 (325)
T ss_pred             CeeecCCCHHHeEECCC-CCEEEeecCCcc
Confidence            59999999999999874 689999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=97.61  E-value=0.00038  Score=59.47  Aligned_cols=140  Identities=14%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeecC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIHA  116 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~G  116 (267)
                      |..|....||++....  +.....+++|........  .....+|..+++.+...++ +++++.+.+    .+++||++|
T Consensus         3 lg~G~~g~Vy~~~~~~--~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           3 IGNGWFGKVILGEVNS--GYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNL-LQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             ccccCCceEEEEEEcC--CCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCE-eeEEEEEcCCCCcEEEEECCCC
Confidence            5667678899987532  112456788876443211  1122357777777754443 345555432    288999987


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      ..+..       ..          +.........+. ...+..+..+                 +...++.+-       
T Consensus        80 g~L~~-------~l----------~~~~~~~~~~~~-~~~~~~~~~q-----------------i~~al~~lH-------  117 (269)
T cd05087          80 GDLKG-------YL----------RSCRKAELMTPD-PTTLQRMACE-----------------IALGLLHLH-------  117 (269)
T ss_pred             CcHHH-------HH----------HHhhhccccccc-HHHHHHHHHH-----------------HHHHHHHHH-------
Confidence            65532       01          000000000000 1111112111                 122223332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ...++|+|++|.||++++ ++.+.++||..+.
T Consensus       118 -~~~i~H~dlkp~nil~~~-~~~~kL~dfg~~~  148 (269)
T cd05087         118 -KNNFIHSDLALRNCLLTA-DLTVKIGDYGLSH  148 (269)
T ss_pred             -HCCEeccccCcceEEEcC-CCcEEECCccccc
Confidence             234999999999999987 4679999998763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.61  E-value=0.00017  Score=62.00  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=76.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      .+..|..|....+|++....    .+..+++|.+......  . ..-..|.++++.+..-++. ++++.+.+    .+++
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~   79 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKE----TGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLV-NLIEVFRRKKRLYLVF   79 (286)
T ss_pred             EeeeeccCCCeEEEEEEECC----CCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchh-hHHHhcccCCeEEEEE
Confidence            34667778788999998643    3578999987543211  1 1113677777777544433 33333322    2889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..           +.      +. .  ..  .. ...+..+..                 .+...+..|.+ 
T Consensus        80 e~~~~~~l~~-----------~~------~~-~--~~--~~-~~~~~~~~~-----------------~i~~~l~~LH~-  118 (286)
T cd07846          80 EFVDHTVLDD-----------LE------KY-P--NG--LD-ESRVRKYLF-----------------QILRGIEFCHS-  118 (286)
T ss_pred             ecCCccHHHH-----------HH------hc-c--CC--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9998744321           00      00 0  00  00 111111111                 12222333321 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       119 -------~~i~h~~l~p~ni~~~~~-~~~~l~dfg~~~  148 (286)
T cd07846         119 -------HNIIHRDIKPENILVSQS-GVVKLCDFGFAR  148 (286)
T ss_pred             -------CCccccCCCHHHEEECCC-CcEEEEeeeeee
Confidence                   348999999999999874 689999998664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=97.61  E-value=0.00093  Score=57.83  Aligned_cols=139  Identities=13%  Similarity=-0.055  Sum_probs=76.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEECC---eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD---GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e  112 (267)
                      ...|..|..+.+|++....    .+..+.+|.......   .... ...|+.+++.+....+.+-......+   .++++
T Consensus         5 ~~~ig~G~~g~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             eEEeecCCCeEEEEEEEcC----CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            4557777788999987643    357888887643211   0011 12577777777554444332222222   28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ...          ....  .. .. ......+..+                 +...+..+-   
T Consensus        81 ~~~g~~L~~-------~l~----------~~~~--~~-l~-~~~~~~~~~q-----------------i~~~l~~lH---  119 (285)
T cd05630          81 LMNGGDLKF-------HIY----------HMGE--AG-FE-EGRAVFYAAE-----------------ICCGLEDLH---  119 (285)
T ss_pred             ecCCCcHHH-------HHH----------Hhcc--cC-CC-HHHHHHHHHH-----------------HHHHHHHHH---
Confidence            999866632       010          0000  00 00 0111112211                 122222332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       120 -----~~~iiH~dikp~Nil~~~~-~~~~l~Dfg~~~  150 (285)
T cd05630         120 -----QERIVYRDLKPENILLDDH-GHIRISDLGLAV  150 (285)
T ss_pred             -----hCCEEeCCCCHHHEEECCC-CCEEEeecccee
Confidence                 2358999999999999874 679999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=97.60  E-value=0.00036  Score=60.93  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---cc-ChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FF-NRDDEIRTFECMSSQGQGPRLLGRFG-DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~-dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v  110 (267)
                      .+..+..|.-..+|++....    .+..+++|........   .. ...+|..+++.+..-++ +++++.+. +.   ++
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-~~~~~~~~~~~~~~lv   79 (305)
T cd05609           5 TIKLISNGAYGAVYLVRHKE----TRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFV-VSMFCSFETKRHLCMV   79 (305)
T ss_pred             EeeEeecCCCeeEEEEEECC----CCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCe-eeeEEEEecCCEEEEE
Confidence            35667777778999987543    3578889876543211   11 11256666666644333 44555543 22   78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       .       +..-+  ..       .......+..+                 +...+..+..
T Consensus        80 ~e~~~g~~L~~-------~-------l~~~~--~~-------~~~~~~~~~~~-----------------i~~~l~~lH~  119 (305)
T cd05609          80 MEYVEGGDCAT-------L-------LKNIG--AL-------PVDMARMYFAE-----------------TVLALEYLHN  119 (305)
T ss_pred             EecCCCCcHHH-------H-------HHHcC--CC-------CHHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999855432       1       11100  00       11112222211                 1122233321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+||++++ .+.+.++||..+.
T Consensus       120 --------~~i~H~dl~p~NIll~~-~~~~~l~dfg~~~  149 (305)
T cd05609         120 --------YGIVHRDLKPDNLLITS-MGHIKLTDFGLSK  149 (305)
T ss_pred             --------CCccccCCchHHEEECC-CCCEEEeeCCCcc
Confidence                    24899999999999987 4689999999764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=97.60  E-value=0.00034  Score=59.12  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEE--CCe---eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRF--GDG---RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~~---~v~  111 (267)
                      ++.+..|....+|++....    .+..+++|.......  ... ....|.++++.+...++.+ ++...  .++   +++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~lv~   79 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRT----DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVA-YRESWEGEDGLLYIVM   79 (257)
T ss_pred             EEEecCCCCeEEEEEEEcC----CCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeee-eeeeecCCCCEEEEEe
Confidence            4556778788999998543    346788887643211  111 1135666666665444333 23322  222   688


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...          ...  ..  +-.......+..+                 +...+..+-  
T Consensus        80 e~~~~~~l~~-------~l~----------~~~--~~--~l~~~~~~~~~~~-----------------l~~~l~~lH--  119 (257)
T cd08223          80 GFCEGGDLYH-------KLK----------EQK--GK--LLPENQVVEWFVQ-----------------IAMALQYLH--  119 (257)
T ss_pred             cccCCCcHHH-------HHH----------Hhc--CC--CCCHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            9988765431       111          000  00  0011112112211                 122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       120 ------~~~i~H~di~p~nil~~~~-~~~~l~df~~~~  150 (257)
T cd08223         120 ------EKHILHRDLKTQNVFLTRT-NIIKVGDLGIAR  150 (257)
T ss_pred             ------hCCeeccCCCchhEEEecC-CcEEEecccceE
Confidence                  2358999999999999874 679999999774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=97.60  E-value=0.00034  Score=59.53  Aligned_cols=136  Identities=17%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-------cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--e
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-------VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--R  109 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-------~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~  109 (267)
                      ..|..|..+.+|++....    .+..+.+|.......       ....-.+|+.+++.+...++. ++++...  +.  +
T Consensus         6 ~~lg~g~~~~v~~~~~~~----~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~~   80 (268)
T cd06630           6 QQLGTGAFSSCYQARDVK----TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII-RMLGATCEDSHFNL   80 (268)
T ss_pred             ceecCcCceEEEEEEEcC----CCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCcee-hhhceeccCCeEEE
Confidence            446778888999987432    357888887643221       011114677777777654443 3344332  22  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|.+|.++..       .       +.+.   . +.    . ......|..+                 +...+..|.
T Consensus        81 v~e~~~~~~L~~-------~-------l~~~---~-~~----~-~~~~~~~~~q-----------------l~~al~~LH  120 (268)
T cd06630          81 FVEWMAGGSVSH-------L-------LSKY---G-AF----K-EAVIINYTEQ-----------------LLRGLSYLH  120 (268)
T ss_pred             EEeccCCCcHHH-------H-------HHHh---C-CC----C-HHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999866532       1       1110   0 00    0 1112222221                 222223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.||+++.++..+.|+||..+.
T Consensus       121 --------~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630         121 --------ENQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             --------hCCeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence                    23589999999999998654468999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.59  E-value=0.00027  Score=60.57  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC------eeEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD------GRVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~------~~v~  111 (267)
                      +..+..|..+.+|++.......+.+..+++|........  ..+-.+|+..++.+...++ +++++.+..      .+++
T Consensus         9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i-~~~~~~~~~~~~~~~~lv~   87 (284)
T cd05038           9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENI-VKYKGVCEKPGGRSLRLIM   87 (284)
T ss_pred             heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCCh-heEEeeeecCCCCceEEEE
Confidence            355677778999999864211123578889987654321  1122467777777644333 344444321      2789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ..          +....    ... ......+..                 .+...+..|.  
T Consensus        88 e~~~~~~l~~-------~l----------~~~~~----~~~-~~~~~~~~~-----------------~l~~aL~~lH--  126 (284)
T cd05038          88 EYLPSGSLRD-------YL----------QRHRD----QIN-LKRLLLFSS-----------------QICKGMDYLG--  126 (284)
T ss_pred             ecCCCCCHHH-------HH----------HhCcc----ccC-HHHHHHHHH-----------------HHHHHHHHHH--
Confidence            9998766532       11          11000    000 011111111                 1222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ...++|+|++|.||+++.+ +.+.+.||+.+..
T Consensus       127 ------~~~i~H~dl~p~nil~~~~-~~~~l~dfg~~~~  158 (284)
T cd05038         127 ------SQRYIHRDLAARNILVESE-DLVKISDFGLAKV  158 (284)
T ss_pred             ------hCCeecCCCCHHhEEEcCC-CCEEEcccccccc
Confidence                  2358999999999999874 6899999987754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=97.59  E-value=0.00048  Score=59.17  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      +..+..|..+.+|++....    ++..+++|.+.....  .... ..+|+.+++.+....+. +++..+.  ..  +++|
T Consensus         6 ~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~-~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           6 LSKIGEGSYGVVFKCRNRE----TGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLV-NLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             eeeecccCCeEEEEEEECC----CCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEe-eeeeEEeeCCEEEEEEe
Confidence            4556778788999997543    357888887643221  1111 13688888777643333 2333332  22  7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..           +   +.   .   +..  .. ......+..                 .+...+..|.+  
T Consensus        81 ~~~~~~l~~-----------~---~~---~---~~~--~~-~~~~~~~~~-----------------ql~~~l~~LH~--  118 (286)
T cd07847          81 YCDHTVLNE-----------L---EK---N---PRG--VP-EHLIKKIIW-----------------QTLQAVNFCHK--  118 (286)
T ss_pred             ccCccHHHH-----------H---Hh---C---CCC--CC-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            988743321           1   00   0   000  00 111222221                 12222333322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       119 ------~~i~H~dl~p~nil~~~~-~~~~l~dfg~~~  148 (286)
T cd07847         119 ------HNCIHRDVKPENILITKQ-GQIKLCDFGFAR  148 (286)
T ss_pred             ------CCceecCCChhhEEEcCC-CcEEECccccce
Confidence                  347999999999999874 679999998775

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=97.59  E-value=0.00096  Score=56.01  Aligned_cols=137  Identities=13%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      ...+..|....+|++....    .+..+++|.+.....  ... ...+|++++..+...++.+ ++....  +.  ++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~v~e   79 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLE----TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVK-YIGSIETSDSLYIILE   79 (254)
T ss_pred             eeEEcccCCeEEEEEEEcC----CCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccE-EEEEEEeCCEEEEEEe
Confidence            4567788889999987543    357899998765432  111 1246777777775545443 443332  22  7889


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.+.+..        . ......+..                 .+...+..+-   
T Consensus        80 ~~~~~~L~~--------------~~~~~~~l--------~-~~~~~~~~~-----------------~i~~~l~~lH---  116 (254)
T cd06627          80 YAENGSLRQ--------------IIKKFGPF--------P-ESLVAVYVY-----------------QVLQGLAYLH---  116 (254)
T ss_pred             cCCCCcHHH--------------HHHhccCC--------C-HHHHHHHHH-----------------HHHHHHHHHh---
Confidence            998864431              11111100        0 111111111                 1111222221   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ...++|+|++|+||++++ ++.+.|.||+.+..
T Consensus       117 -----~~~i~H~dl~p~ni~i~~-~~~~~l~d~~~~~~  148 (254)
T cd06627         117 -----EQGVIHRDIKAANILTTK-DGVVKLADFGVATK  148 (254)
T ss_pred             -----hCCcccCCCCHHHEEECC-CCCEEEecccccee
Confidence                 234899999999999987 46899999997763

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=97.59  E-value=0.00065  Score=57.87  Aligned_cols=140  Identities=15%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ...|..|..+.+|++..... +.....+.+|........  ..+-.+|..+++.+...++ .++++...+    .++++|
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~-~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~iv~e~   86 (266)
T cd05033           9 EKVIGGGEFGEVCRGRLKLP-GKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNI-IRLEGVVTKSRPVMIITEY   86 (266)
T ss_pred             eeEecCCccceEEEEEEccC-CCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCc-ceEeEEEecCCceEEEEEc
Confidence            45567777789999876431 112356778876543211  1111357777766654333 334544332    278999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      .+|.++...       ..       + +..      ... ...+..+..+                 +...+..|.+   
T Consensus        87 ~~~~~L~~~-------~~-------~-~~~------~~~-~~~~~~~~~~-----------------l~~~l~~Lh~---  124 (266)
T cd05033          87 MENGSLDKF-------LR-------E-NDG------KFT-VGQLVGMLRG-----------------IASGMKYLSE---  124 (266)
T ss_pred             CCCCCHHHH-------HH-------h-ccC------CCC-HHHHHHHHHH-----------------HHHHHHHHHh---
Confidence            988765321       10       0 100      001 1122222211                 2222233322   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++++ +.+.++||+.+.
T Consensus       125 -----~~i~H~di~p~nili~~~-~~~~l~dfg~~~  154 (266)
T cd05033         125 -----MNYVHRDLAARNILVNSN-LVCKVSDFGLSR  154 (266)
T ss_pred             -----CCcccCCCCcceEEEcCC-CCEEECccchhh
Confidence                 348999999999999874 679999998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=97.59  E-value=0.00071  Score=57.58  Aligned_cols=136  Identities=14%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----cccc-ChHHHHHHHHHHHhCCCCceEEEEECC----e-
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----G-  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~-  108 (267)
                      .+.+..|....+|.+....    .+..+.+|......     .... ...+|+++++.+...++. +.++...+    . 
T Consensus         7 ~~~l~~g~~g~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~~   81 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDAD----TGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIV-QYYGCLRDPMERTL   81 (265)
T ss_pred             eeEEecCCceEEEEEEEcC----CCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCee-eEEeEeccCCCceE
Confidence            4455667678999987542    35788888653211     1111 124578888877554443 34444321    1 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       ++++|++|.++..              .+.+...        .+ ......+..                 .+...++.
T Consensus        82 ~~v~e~~~~~~L~~--------------~l~~~~~--------~~-~~~~~~~~~-----------------~l~~~l~~  121 (265)
T cd06652          82 SIFMEHMPGGSIKD--------------QLKSYGA--------LT-ENVTRKYTR-----------------QILEGVSY  121 (265)
T ss_pred             EEEEEecCCCcHHH--------------HHHHcCC--------CC-HHHHHHHHH-----------------HHHHHHHH
Confidence             6789988766531              0110000        00 011111211                 12222333


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +-+        ..++|+|++|.||++++ ++.+.|+||..+.
T Consensus       122 lH~--------~~i~H~dl~p~nil~~~-~~~~~l~Dfg~~~  154 (265)
T cd06652         122 LHS--------NMIVHRDIKGANILRDS-VGNVKLGDFGASK  154 (265)
T ss_pred             HHh--------CCEecCCCCHHHEEecC-CCCEEECcCcccc
Confidence            321        23899999999999987 4689999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=97.58  E-value=0.00033  Score=61.81  Aligned_cols=29  Identities=17%  Similarity=0.175  Sum_probs=25.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       116 givH~dikp~NIll~~~-~~~kl~Dfg~~~  144 (323)
T cd05575         116 NIIYRDLKPENILLDSQ-GHVVLTDFGLCK  144 (323)
T ss_pred             CeEeCCCCHHHeEECCC-CcEEEeccCCCc
Confidence            49999999999999874 689999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=97.58  E-value=0.00052  Score=58.15  Aligned_cols=136  Identities=16%  Similarity=0.074  Sum_probs=74.5

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC---eeEEEeecCC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEFIHAR  117 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~i~G~  117 (267)
                      |..|..+.+|++.....+ +....+++|........  .....+|..+++.+..-++. ++++....   .++++|++|.
T Consensus         3 ig~G~~g~v~~~~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05060           3 LGHGNFGSVVKGVYLMKS-GKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIV-RLIGVCKGEPLMLVMELAPLG   80 (257)
T ss_pred             cCccCceeEEEeEeeccC-CCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCee-eEEEEEcCCceEEEEEeCCCC
Confidence            556777899988653221 12367888887544321  11123677777777544433 34444432   2788998876


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCC
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQ  197 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  197 (267)
                      ++..       .       +.+-+    +    . .......+..+                 +...+..|.        
T Consensus        81 ~L~~-------~-------l~~~~----~----~-~~~~~~~~~~q-----------------i~~~l~~lh--------  112 (257)
T cd05060          81 PLLK-------Y-------LKKRR----E----I-PVSDLKELAHQ-----------------VAMGMAYLE--------  112 (257)
T ss_pred             cHHH-------H-------HHhCC----C----C-CHHHHHHHHHH-----------------HHHHHHHHh--------
Confidence            5431       1       11111    0    0 01112222211                 222223332        


Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ...++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       113 ~~~i~H~di~p~nili~~~-~~~kl~df~~~~  143 (257)
T cd05060         113 SKHFVHRDLAARNVLLVNR-HQAKISDFGMSR  143 (257)
T ss_pred             hcCeeccCcccceEEEcCC-CcEEeccccccc
Confidence            2348999999999999874 679999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=97.57  E-value=0.00046  Score=59.78  Aligned_cols=80  Identities=15%  Similarity=0.097  Sum_probs=44.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      ...+..|..+.+|++....... .+...+.+|......... ....+|+++++.+...+ ..++++...++    ++++|
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   88 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH-IVKFYGVCGDGDPLIMVFEY   88 (291)
T ss_pred             eeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCC-cceEEEEEccCCceEEEEec
Confidence            3556777788999987432110 123446677654432111 11236777777665433 34455554422    88999


Q ss_pred             ecCCCCC
Q 024452          114 IHARTLS  120 (267)
Q Consensus       114 i~G~~l~  120 (267)
                      ++|.++.
T Consensus        89 ~~~~~L~   95 (291)
T cd05094          89 MKHGDLN   95 (291)
T ss_pred             CCCCcHH
Confidence            9988664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=97.57  E-value=0.00047  Score=59.64  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~  111 (267)
                      ....+..|....+|++...... ......+.+|.......  ......+|+.+++.+.++.-..+.++.+. ++   +++
T Consensus        16 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~   95 (293)
T cd05053          16 LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVV   95 (293)
T ss_pred             EeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEE
Confidence            3566777878899998753211 01235678887654321  11112367777777754433334555443 22   789


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|.+|.++.
T Consensus        96 e~~~~~~L~  104 (293)
T cd05053          96 EYAAHGNLR  104 (293)
T ss_pred             EeCCCCcHH
Confidence            999887653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=97.56  E-value=0.00044  Score=58.98  Aligned_cols=138  Identities=14%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-------C---eeE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-------D---GRV  110 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-------~---~~v  110 (267)
                      ..+..|....+|++....    .+..+++|+.............|..+++.+..+.-..+.++.+.       +   .++
T Consensus        12 ~~lg~g~~g~vy~~~~~~----~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv   87 (272)
T cd06637          12 ELVGNGTYGQVYKGRHVK----TGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLV   87 (272)
T ss_pred             HheeecCCeEEEEEEEcC----CCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEE
Confidence            346667778999987543    35788888875432221222467788877755433334444321       1   167


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       .. +.    ....+  ......+..                 .+...+..|-+
T Consensus        88 ~e~~~~~~L~~-------~l-------~~-~~----~~~l~--~~~~~~~~~-----------------qi~~~l~~LH~  129 (272)
T cd06637          88 MEFCGAGSVTD-------LI-------KN-TK----GNTLK--EEWIAYICR-----------------EILRGLSHLHQ  129 (272)
T ss_pred             EEcCCCCcHHH-------HH-------Hh-cc----CCCCC--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            88887765532       01       00 00    00000  111111111                 12222233322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|+++.||+++++ +.+.|+||..+.
T Consensus       130 --------~~ivh~dl~~~nili~~~-~~~~l~Dfg~~~  159 (272)
T cd06637         130 --------HKVIHRDIKGQNVLLTEN-AEVKLVDFGVSA  159 (272)
T ss_pred             --------CCCccCCCCHHHEEECCC-CCEEEccCCCce
Confidence                    248999999999999974 679999999874

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=97.56  E-value=0.00064  Score=58.79  Aligned_cols=143  Identities=17%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEEC---C-----
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFG---D-----  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~---~-----  107 (267)
                      ....|..|....+|++....    ++..+++|........   .....+|+.+++.+.++...++++....   .     
T Consensus         5 ~~~~lg~g~~g~vy~~~~~~----~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           5 KLEKIGEGTYGKVYKARDKN----TGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             EeeEecccCCeEEEEEEECC----CCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            34566777788999998543    3578999976433211   1122468888888876543444554331   2     


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .++++|++| .+..              .+...+..  +..  +-.......+..+                 +...+.
T Consensus        81 ~~lv~e~~~~-~l~~--------------~~~~~~~~--~~~--~~~~~~~~~~~~q-----------------i~~~L~  124 (295)
T cd07837          81 LYLVFEYLDS-DLKK--------------FMDSNGRG--PGR--PLPAKTIKSFMYQ-----------------LLKGVA  124 (295)
T ss_pred             EEEEeeccCc-CHHH--------------HHHHhccc--CCC--CCCHHHHHHHHHH-----------------HHHHHH
Confidence             277888775 2211              01110110  000  0011122222221                 222223


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .|-        ...++|+|++|+||+++.+++.+.+.||..+.
T Consensus       125 ~LH--------~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~  159 (295)
T cd07837         125 HCH--------KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGR  159 (295)
T ss_pred             HHH--------HCCeeecCCChHHEEEecCCCeEEEeecccce
Confidence            332        23489999999999999744678999998664

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=97.55  E-value=0.00044  Score=59.00  Aligned_cols=29  Identities=28%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.++||..+.
T Consensus       120 ~ivH~dlkp~Nill~~~-~~~kl~dfg~~~  148 (269)
T cd05042         120 DFIHSDLALRNCQLTAD-LSVKIGDYGLAL  148 (269)
T ss_pred             CEecccccHhheEecCC-CcEEEecccccc
Confidence            48999999999999974 689999999764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=97.55  E-value=0.00044  Score=61.98  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       143 ~ivHrDlkp~NIl~~~~-~~~kl~Dfg~a~  171 (359)
T cd07876         143 GIIHRDLKPSNIVVKSD-CTLKILDFGLAR  171 (359)
T ss_pred             CcccCCCCHHHEEECCC-CCEEEecCCCcc
Confidence            58999999999999874 689999999774

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=97.54  E-value=0.00038  Score=59.30  Aligned_cols=136  Identities=14%  Similarity=0.101  Sum_probs=76.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      +..+..|..+.+|++....    ++..+++|+....... .....+|+.+++.+...++. ++++...  +.  +++||+
T Consensus        14 ~~~lg~g~~g~vy~~~~~~----~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii-~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLH----TGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIV-AYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hheeecCCCeEEEEEEECC----CCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCee-eeeEEEEeCCEEEEEEeCC
Confidence            4556777788999997542    3567888887543221 11123677777666554443 3343332  22  789998


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       .          +|... +.    + ......+..                 .+...++.+-     
T Consensus        89 ~~~~L~~-------~----------~~~~~-~~----~-~~~~~~~~~-----------------qi~~~l~~lH-----  123 (267)
T cd06646          89 GGGSLQD-------I----------YHVTG-PL----S-ELQIAYVCR-----------------ETLQGLAYLH-----  123 (267)
T ss_pred             CCCcHHH-------H----------HHhcC-CC----C-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8766532       0          11100 00    0 011111111                 1222223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|+||+++.+ +.+.|+||..+.
T Consensus       124 ---~~~i~H~dl~p~nill~~~-~~~~l~dfg~~~  154 (267)
T cd06646         124 ---SKGKMHRDIKGANILLTDN-GDVKLADFGVAA  154 (267)
T ss_pred             ---HCCccccCCCHHHEEECCC-CCEEECcCccce
Confidence               2358999999999999864 679999998775

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.53  E-value=0.0003  Score=59.62  Aligned_cols=136  Identities=20%  Similarity=0.169  Sum_probs=76.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ...+..|..+.+|++...     ....+++|+.........+...|..+++.+...++ ++.++....    .++++|++
T Consensus         9 ~~~lg~G~~~~v~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           9 LKELGSGQFGVVHLGKWR-----GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNL-VQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             hhhhccCCCceEEEeEec-----CCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCE-EEEEEEEcCCCceEEEEecCC
Confidence            445677777899998753     24678999875432111111357777777754332 345554432    28899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       ..          +...  .  ... ......+..                 .+...+..+.+     
T Consensus        83 ~~~L~~-------~l----------~~~~--~--~~~-~~~~~~i~~-----------------qi~~~l~~lH~-----  118 (256)
T cd05059          83 NGCLLN-------YL----------RERK--G--KLG-TEWLLDMCS-----------------DVCEAMEYLES-----  118 (256)
T ss_pred             CCCHHH-------HH----------Hhcc--c--CCC-HHHHHHHHH-----------------HHHHHHHHHHH-----
Confidence            876531       01          0100  0  000 111111211                 12222233321     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.||+++++ +.+.++||+.+.
T Consensus       119 ---~~i~H~dl~p~ni~i~~~-~~~kl~dfg~~~  148 (256)
T cd05059         119 ---NGFIHRDLAARNCLVGED-NVVKVSDFGLAR  148 (256)
T ss_pred             ---CCcccccccHhhEEECCC-CcEEECCcccce
Confidence               238999999999999874 679999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=97.53  E-value=0.0011  Score=55.95  Aligned_cols=138  Identities=10%  Similarity=0.048  Sum_probs=77.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      ...+..|..+.+|++....    .+..+++|.+....  ....+...|..+++.+...++ ++++..+.  +.  ++++|
T Consensus         5 ~~~lg~g~~g~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVN----SDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNI-VAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             EEEeeccCCeEEEEEEEcC----CCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCc-ceEEEEEEECCEEEEEEee
Confidence            4567778788999998643    35788999864322  111122467777776655444 33444433  22  78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..              .+.......      . ....+..|..+                 +...+..+.    
T Consensus        80 ~~~~~l~~--------------~~~~~~~~~------~-~~~~~~~~~~~-----------------i~~al~~lH----  117 (255)
T cd08219          80 CDGGDLMQ--------------KIKLQRGKL------F-PEDTILQWFVQ-----------------MCLGVQHIH----  117 (255)
T ss_pred             CCCCcHHH--------------HHHhccCCC------C-CHHHHHHHHHH-----------------HHHHHHHHh----
Confidence            98754421              011100000      0 01112222221                 122223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       118 ----~~~i~H~dl~p~nili~~~-~~~~l~dfg~~~  148 (255)
T cd08219         118 ----EKRVLHRDIKSKNIFLTQN-GKVKLGDFGSAR  148 (255)
T ss_pred             ----hCCcccCCCCcceEEECCC-CcEEEcccCcce
Confidence                2358999999999999874 679999999774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=97.53  E-value=0.00061  Score=61.20  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++++ +.+.|+||..|.
T Consensus       146 ~ivH~Dlkp~NIll~~~-~~~kL~DfG~a~  174 (364)
T cd07875         146 GIIHRDLKPSNIVVKSD-CTLKILDFGLAR  174 (364)
T ss_pred             CeecCCCCHHHEEECCC-CcEEEEeCCCcc
Confidence            58999999999999874 689999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=97.52  E-value=0.00067  Score=58.04  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEeecC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEFIHA  116 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~i~G  116 (267)
                      +..|....+|++.....  +....+.+|...... .. ......|++++..+..+.-..++++.+.. +   ++++|++|
T Consensus         3 lg~g~~g~v~~~~~~~~--~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           3 IGEGNFGQVLKARIKKD--GLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CCCCCCceEEEEEEcCC--CCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            55677789999976431  011245666654321 11 11224688888888655434456655532 2   88999988


Q ss_pred             CCCC
Q 024452          117 RTLS  120 (267)
Q Consensus       117 ~~l~  120 (267)
                      .++.
T Consensus        81 ~~L~   84 (270)
T cd05047          81 GNLL   84 (270)
T ss_pred             CcHH
Confidence            7553

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=97.52  E-value=0.00043  Score=59.46  Aligned_cols=81  Identities=17%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC-C---eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG-D---GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~---~~v~  111 (267)
                      -...|+.|..+.+|++......+ ..+..+.+|........  ..+-.+|..+++.+...++. ++++.+. .   .+++
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~lv~   88 (277)
T cd05036          10 LLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIV-RLIGVSFERLPRFILL   88 (277)
T ss_pred             eeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEe-eEEEEEccCCCcEEEE
Confidence            45567888889999997643110 02456778876433211  11123566666666543333 3444332 2   2789


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|++|.++.
T Consensus        89 e~~~g~~L~   97 (277)
T cd05036          89 ELMAGGDLK   97 (277)
T ss_pred             ecCCCCCHH
Confidence            999886553

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=97.52  E-value=0.00078  Score=58.25  Aligned_cols=136  Identities=14%  Similarity=0.131  Sum_probs=76.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~  113 (267)
                      ..+.|..|..+.+|++....    .+..+++|..........+ ..+|..+++.+...++ .++++.+.  +  .++++|
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~v-v~~~~~~~~~~~~~~v~e~   97 (285)
T cd06648          23 NFVKIGEGSTGIVCIATDKS----TGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNI-VEMYSSYLVGDELWVVMEF   97 (285)
T ss_pred             cceEeccCCCeEEEEEEECC----CCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCCh-heEEEEEEcCCeEEEEEec
Confidence            56788888889999987432    3567888865322111110 1356666666654333 33444332  2  278999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       .       +.. +.  .      + ...+..+..+                 +...+..+.    
T Consensus        98 ~~~~~L~~-------~-------~~~-~~--~------~-~~~~~~~~~q-----------------l~~~l~~lH----  132 (285)
T cd06648          98 LEGGALTD-------I-------VTH-TR--M------N-EEQIATVCLA-----------------VLKALSFLH----  132 (285)
T ss_pred             cCCCCHHH-------H-------HHh-CC--C------C-HHHHHHHHHH-----------------HHHHHHHHH----
Confidence            98866532       1       111 00  0      0 1112222221                 222233332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       133 ----~~~i~H~dl~p~Nil~~~~-~~~~l~d~g~~~  163 (285)
T cd06648         133 ----AQGVIHRDIKSDSILLTSD-GRVKLSDFGFCA  163 (285)
T ss_pred             ----hCCeecCCCChhhEEEcCC-CcEEEcccccch
Confidence                2348999999999999874 689999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=97.51  E-value=0.0004  Score=61.63  Aligned_cols=137  Identities=14%  Similarity=0.122  Sum_probs=73.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -+..|..|..+.||++....    .+..+.+|+......   .... ...|..++..+.. ...+.++..+.  +.  +|
T Consensus         5 i~~~lG~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~-~~i~~l~~~~~~~~~~~lv   79 (331)
T cd05624           5 IIKVIGRGAFGEVAVVKMKH----TERIYAMKILNKWEMLKRAETACFREERNVLVNGDC-QWITTLHYAFQDENYLYLV   79 (331)
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCC-CCEeeEEEEEEcCCEEEEE
Confidence            45677888889999998643    357788998643210   0000 1234444433322 22334444433  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+... ..     +  ......|..+                 +...++.+- 
T Consensus        80 ~Ey~~gg~L~~--------------~l~~~~~-~l-----~--~~~~~~~~~q-----------------i~~~L~~lH-  119 (331)
T cd05624          80 MDYYVGGDLLT--------------LLSKFED-RL-----P--EDMARFYIAE-----------------MVLAIHSIH-  119 (331)
T ss_pred             EeCCCCCcHHH--------------HHHHhcC-CC-----C--HHHHHHHHHH-----------------HHHHHHHHH-
Confidence            99999866542              1111100 00     0  0111112211                 122223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|
T Consensus       120 -------~~~iiHrDlkp~Nill~~~-~~~kl~DfG~a  149 (331)
T cd05624         120 -------QLHYVHRDIKPDNVLLDMN-GHIRLADFGSC  149 (331)
T ss_pred             -------HCCeeeccCchHHEEEcCC-CCEEEEeccce
Confidence                   2358999999999999874 67999999865

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.51  E-value=0.00062  Score=58.47  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=76.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEeec
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFIH  115 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i~  115 (267)
                      ..+..|..+.+|++....    .+..+++|.......... +...|+.+++.+. +.-.+++++.+.  +  .+++||++
T Consensus        11 ~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~lv~e~~~   85 (280)
T cd06611          11 GELGDGAFGKVYKAQHKE----TGLFAAAKIIQIESEEELEDFMVEIDILSECK-HPNIVGLYEAYFYENKLWILIEFCD   85 (280)
T ss_pred             HHhcCCCCceEEEEEEcC----CCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCC-CCceeEEEEEEecCCeEEEEeeccC
Confidence            345677788999998643    357888898754432211 1236777777776 333445555443  2  28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+...       ...          ...+.    . ......+..                 .+...+..+.+     
T Consensus        86 ~~~L~~~-------~~~----------~~~~l----~-~~~~~~~~~-----------------ql~~~l~~lh~-----  121 (280)
T cd06611          86 GGALDSI-------MLE----------LERGL----T-EPQIRYVCR-----------------QMLEALNFLHS-----  121 (280)
T ss_pred             CCcHHHH-------HHH----------hcCCC----C-HHHHHHHHH-----------------HHHHHHHHHHH-----
Confidence            8766421       110          00000    0 011111211                 11222233321     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.||+++.+ +.+.++||..+.
T Consensus       122 ---~~i~h~dl~p~nili~~~-~~~~l~d~g~~~  151 (280)
T cd06611         122 ---HKVIHRDLKAGNILLTLD-GDVKLADFGVSA  151 (280)
T ss_pred             ---CCcccCCCChhhEEECCC-CCEEEccCccch
Confidence               247999999999999874 689999997653

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PTZ00036 glycogen synthase kinase; Provisional

Probab=97.51  E-value=0.00058  Score=63.27  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+++.+.|+||..|.
T Consensus       190 ~IiHrDLKp~NILl~~~~~~vkL~DFGla~  219 (440)
T PTZ00036        190 FICHRDLKPQNLLIDPNTHTLKLCDFGSAK  219 (440)
T ss_pred             CEecCCcCHHHEEEcCCCCceeeeccccch
Confidence            499999999999998654568999999874

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=97.51  E-value=0.00043  Score=59.24  Aligned_cols=134  Identities=15%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i  114 (267)
                      ..+..|..+.+|++....    .+..+++|+.....  .......+|.++++.+..-++.+ ++..+  ...  ++++|+
T Consensus         7 ~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKR----TNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITK-YYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhcCCCCeEEEEEEECC----CCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeee-eeEEEEECCeEEEEEEee
Confidence            345667778999997543    35789999875432  11122246777777776444443 23322  222  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..          +....      . ......+..+                 +...+..+.     
T Consensus        82 ~~~~L~~-------~~----------~~~~~------~-~~~~~~~~~q-----------------l~~~l~~lh-----  115 (274)
T cd06609          82 GGGSCLD-------LL----------KPGKL------D-ETYIAFILRE-----------------VLLGLEYLH-----  115 (274)
T ss_pred             CCCcHHH-------HH----------hhcCC------C-HHHHHHHHHH-----------------HHHHHHHHH-----
Confidence            8866532       00          11010      0 1112112111                 112222332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||++++ ++.+.++||..+.
T Consensus       116 ---~~~i~h~dl~p~ni~i~~-~~~~~l~d~g~~~  146 (274)
T cd06609         116 ---EEGKIHRDIKAANILLSE-EGDVKLADFGVSG  146 (274)
T ss_pred             ---hCCcccCCCCHHHEEECC-CCCEEEcccccce
Confidence               124899999999999997 4689999998663

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=97.50  E-value=0.00071  Score=57.31  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      ...|..|..+.+|++....    ++..+++|........   ...-..|..+++.+...++ .++++...  +.  +++|
T Consensus         5 ~~~lg~G~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLD----TGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNL-VKYYGVEVHREKVYIFME   79 (264)
T ss_pred             eeEeecCCCcEEEEEEECC----CCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCCh-hheeeeEecCCEEEEEEe
Confidence            3566778788999997542    3578888886543221   1112467777777755443 33444433  22  7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..          +....     .. ......+..                 .+...+..+.+  
T Consensus        80 ~~~~~~L~~-------~~----------~~~~~-----~~-~~~~~~i~~-----------------~i~~~l~~lh~--  117 (264)
T cd06626          80 YCSGGTLEE-------LL----------EHGRI-----LD-EHVIRVYTL-----------------QLLEGLAYLHS--  117 (264)
T ss_pred             cCCCCcHHH-------HH----------hhcCC-----CC-hHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            998766632       11          11000     00 011111211                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            ..++|+|++++||++++ ++.+.|.||..+..
T Consensus       118 ------~~i~H~dl~~~nil~~~-~~~~kl~d~g~~~~  148 (264)
T cd06626         118 ------HGIVHRDIKPANIFLDH-NGVIKLGDFGCAVK  148 (264)
T ss_pred             ------CCcccCCCCHHHEEECC-CCCEEEcccccccc
Confidence                  23899999999999997 46899999987653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=97.50  E-value=0.00047  Score=59.25  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=76.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e  112 (267)
                      ...|..|....+|++....    .+..+++|.+....  ....+ ..+|.++++.+..-++ +++++.+.  +  .++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~----~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKA----TGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENI-VNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             EEEecccCCeeEEEEEeCC----CCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCe-eehhheEEECCEEEEEEe
Confidence            4556777778899997543    35789999875431  11111 2478888888874443 33444332  2  27899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..           +   ..    ..  ..  .. ...+..+..                 .+...+..|.   
T Consensus        81 ~~~~~~l~~-----------~---~~----~~--~~--~~-~~~~~~~~~-----------------~i~~~l~~LH---  117 (288)
T cd07833          81 YVERTLLEL-----------L---EA----SP--GG--LP-PDAVRSYIW-----------------QLLQAIAYCH---  117 (288)
T ss_pred             cCCCCHHHH-----------H---Hh----cC--CC--CC-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            988643321           0   00    00  00  00 011111111                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ...++|+|+++.||++++ ++.+.|.||+.+..
T Consensus       118 -----~~~i~H~dl~~~ni~~~~-~~~~kl~d~g~~~~  149 (288)
T cd07833         118 -----SHNIIHRDIKPENILVSE-SGVLKLCDFGFARA  149 (288)
T ss_pred             -----HCCeecCCCCHHHeEECC-CCCEEEEeeecccc
Confidence                 124899999999999987 47899999987653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=97.49  E-value=0.0014  Score=55.87  Aligned_cols=137  Identities=14%  Similarity=0.146  Sum_probs=76.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----------ccC-hHHHHHHHHHHHhCCCCceEEEEECCe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----------FFN-RDDEIRTFECMSSQGQGPRLLGRFGDG  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----------~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~  108 (267)
                      ..++..|....+|++....    .+..+.+|........          ..+ -..|..+++.+..-+ .+++++....+
T Consensus         6 ~~~lg~g~~~~vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~   80 (272)
T cd06629           6 GELIGKGTYGRVYLALNVT----TGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLN-IVQYLGFETTE   80 (272)
T ss_pred             cceecccCceEEEEEeecC----CCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCC-cceEEEEeccC
Confidence            4567788888999986432    3578888876432110          000 124666666664333 34566655432


Q ss_pred             ----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          109 ----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       109 ----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                          +++||++|.++..              .+.+-.  ..     ..  ..+..+..                 .+...
T Consensus        81 ~~~~lv~e~~~~~~L~~--------------~l~~~~--~l-----~~--~~~~~~~~-----------------qi~~~  120 (272)
T cd06629          81 EYLSIFLEYVPGGSIGS--------------CLRTYG--RF-----EE--QLVRFFTE-----------------QVLEG  120 (272)
T ss_pred             CceEEEEecCCCCcHHH--------------HHhhcc--CC-----CH--HHHHHHHH-----------------HHHHH
Confidence                7899999876532              111100  00     00  11111111                 12222


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +..+.        ...++|+|++++||++++ ++.+.+.||..+..
T Consensus       121 l~~lH--------~~~i~H~dl~~~nil~~~-~~~~~l~d~~~~~~  157 (272)
T cd06629         121 LAYLH--------SKGILHRDLKADNLLVDA-DGICKISDFGISKK  157 (272)
T ss_pred             HHHHh--------hCCeeecCCChhhEEEcC-CCeEEEeecccccc
Confidence            23332        135899999999999987 46899999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=97.49  E-value=0.00034  Score=59.19  Aligned_cols=136  Identities=17%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE-CCe--eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF-GDG--RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~~~--~v~e~i~G  116 (267)
                      ...+..|..+.+|.+..      .+..+++|........ ..-.+|+.+++.+...++.+ .++.. .++  ++++|++|
T Consensus        11 ~~~lg~g~~g~v~~~~~------~~~~~~iK~~~~~~~~-~~~~~e~~~l~~~~~~~i~~-~~~~~~~~~~~~v~e~~~~   82 (254)
T cd05083          11 GEIIGEGEFGAVLQGEY------TGQKVAVKNIKCDVTA-QAFLEETAVMTKLHHKNLVR-LLGVILHNGLYIVMELMSK   82 (254)
T ss_pred             eeeeccCCCCceEeccc------CCCceEEEeecCcchH-HHHHHHHHHHHhCCCCCcCe-EEEEEcCCCcEEEEECCCC
Confidence            34556666778998763      2467888887543211 11136778777776555544 33333 233  78899887


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ..       .. +.    ... .. ......+..                 .+...+..+.       
T Consensus        83 ~~L~~-------~l-------~~-~~----~~~-~~-~~~~~~~~~-----------------qi~~al~~lH-------  117 (254)
T cd05083          83 GNLVN-------FL-------RT-RG----RAL-VS-VIQLLQFSL-----------------DVAEGMEYLE-------  117 (254)
T ss_pred             CCHHH-------HH-------Hh-cC----cCC-CC-HHHHHHHHH-----------------HHHHHHHHHH-------
Confidence            76532       11       00 00    000 01 111111211                 1122222332       


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                       ...++|+|++|+||+++.+ +.+.|+||+.+..
T Consensus       118 -~~~~~H~dl~p~nili~~~-~~~kl~Dfg~~~~  149 (254)
T cd05083         118 -SKKLVHRDLAARNILVSED-GVAKVSDFGLARV  149 (254)
T ss_pred             -hCCeeccccCcceEEEcCC-CcEEECCCcccee
Confidence             2458999999999999874 6899999997754

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=97.49  E-value=0.00065  Score=58.96  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++++ +.+.++||..+.
T Consensus       149 ~i~H~dlkp~Nill~~~-~~~kl~dfg~~~  177 (295)
T cd05097         149 NFVHRDLATRNCLVGNH-YTIKIADFGMSR  177 (295)
T ss_pred             CeeccccChhhEEEcCC-CcEEeccccccc
Confidence            58999999999999864 679999998764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=97.49  E-value=0.00082  Score=58.10  Aligned_cols=138  Identities=15%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ..++.|..|..+.+|++....    .+..+++|........  .....+|..+++.+...++ ++++....++    +++
T Consensus         8 ~~~~~ig~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           8 LNLEKLGEGSYATVYKGISRI----NGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANI-VLLHDIIHTKETLTFVF   82 (291)
T ss_pred             EEEEEEEecCCEEEEEEEEcC----CCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCE-eEEEEEEecCCeEEEEE
Confidence            346677788889999987542    3578999987543211  1122468888877755443 3444443321    778


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+.           .+       ....  ..   .....+..+..                 .+...+..|-  
T Consensus        83 e~~~~~l~~-----------~~-------~~~~--~~---~~~~~~~~~~~-----------------qi~~~L~~lH--  120 (291)
T cd07870          83 EYMHTDLAQ-----------YM-------IQHP--GG---LHPYNVRLFMF-----------------QLLRGLAYIH--  120 (291)
T ss_pred             ecccCCHHH-----------HH-------HhCC--CC---CCHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            887652111           00       0000  00   00111111111                 1122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       121 ------~~~i~H~dlkp~Nil~~~~-~~~~l~Dfg~~~  151 (291)
T cd07870         121 ------GQHILHRDLKPQNLLISYL-GELKLADFGLAR  151 (291)
T ss_pred             ------hCCcccCCCChHHEEEcCC-CcEEEecccccc
Confidence                  2248999999999999874 689999999664

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=97.48  E-value=0.00071  Score=58.22  Aligned_cols=78  Identities=13%  Similarity=0.041  Sum_probs=45.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      ..|..|--+.+|++.........+..+.+|....... .. .+-.+|..+++.+...++ +++++....    .+++||+
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~   89 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNI-VCLLGVVTQEQPVCMLFEYL   89 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCe-eeEEEEEecCCceEEEEEcC
Confidence            5667777789999874221111346777877653221 11 112467777777754443 345554332    2889999


Q ss_pred             cCCCC
Q 024452          115 HARTL  119 (267)
Q Consensus       115 ~G~~l  119 (267)
                      +|.++
T Consensus        90 ~~~~L   94 (283)
T cd05090          90 NQGDL   94 (283)
T ss_pred             CCCcH
Confidence            87655

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=97.48  E-value=0.00017  Score=62.37  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC--hHHHHHHHHHHHhCCCC--ceEEEEECCe-eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN--RDDEIRTFECMSSQGQG--PRLLGRFGDG-RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d--r~~E~~~~~~l~~~gl~--P~v~~~~~~~-~v~e~  113 (267)
                      +..+..|-...||+|...+    .++-+.+|.+-...+ ..+.  .-+|+.+++.|....++  -+|+-.-... +|+||
T Consensus         7 LgkvGEGSYGvV~KCrnk~----TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    7 LGKVGEGSYGVVMKCRNKD----TGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             hhccccCcceEEEEeccCC----cccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            3456788899999998654    356777887633221 1221  13799999999876653  2222222222 78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++-..+..                  |...  |.+. +  .+.+..|+-++                 ...+.+      
T Consensus        83 ~dhTvL~e------------------Le~~--p~G~-~--~~~vk~~l~Q~-----------------l~ai~~------  116 (396)
T KOG0593|consen   83 CDHTVLHE------------------LERY--PNGV-P--SELVKKYLYQL-----------------LKAIHF------  116 (396)
T ss_pred             cchHHHHH------------------HHhc--cCCC-C--HHHHHHHHHHH-----------------HHHhhh------
Confidence            88422221                  0010  1111 1  12222232211                 111121      


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc----chHhHHHHh
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ----NMLNFKRAC  239 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~----~~~~fD~A~  239 (267)
                        -.....+|+|++|.|||+.. ++.+.+-||.||..    |...=|..+
T Consensus       117 --cHk~n~IHRDIKPENILit~-~gvvKLCDFGFAR~L~~pgd~YTDYVA  163 (396)
T KOG0593|consen  117 --CHKNNCIHRDIKPENILITQ-NGVVKLCDFGFARTLSAPGDNYTDYVA  163 (396)
T ss_pred             --hhhcCeecccCChhheEEec-CCcEEeccchhhHhhcCCcchhhhhhh
Confidence              12233899999999999997 47899999999963    444444443

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=97.48  E-value=0.00055  Score=58.83  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEECC----eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD----GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e  112 (267)
                      ...|..|....||++...... ......+.+|....... .... -.+|+.++..+...++. ++++...+    .++++
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~-~~~~~~~~~~~~~~~~e   88 (283)
T cd05048          10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIV-CLLGVCTKEQPTCMLFE   88 (283)
T ss_pred             hhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccc-eEEEEEcCCCceEEEEe
Confidence            455677777899998754211 01235678887654321 1111 13577777666544433 34444332    27899


Q ss_pred             eecCCCC
Q 024452          113 FIHARTL  119 (267)
Q Consensus       113 ~i~G~~l  119 (267)
                      |.+|.++
T Consensus        89 ~~~~~~L   95 (283)
T cd05048          89 YLAHGDL   95 (283)
T ss_pred             cCCCCcH
Confidence            9987654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=97.47  E-value=0.00088  Score=57.58  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--------C--ee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--------D--GR  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--------~--~~  109 (267)
                      ...+..|-.+.+|++....    .+..+.+|+.............|..+++.+..+.-..+.++.+-        +  .+
T Consensus        21 ~~~lg~g~~~~v~~~~~~~----~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~i   96 (282)
T cd06636          21 VEVVGNGTYGQVYKGRHVK----TGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWL   96 (282)
T ss_pred             heeeccCCCeEEEEEEEcC----CCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEE
Confidence            3556777788999998643    35788899865432211112457777777755443344444331        1  27


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++||++|.++..       ...       . +.    ....+  ...+..+..                 .+...+..+-
T Consensus        97 v~e~~~~~~L~~-------~~~-------~-~~----~~~~~--~~~~~~~~~-----------------qi~~al~~LH  138 (282)
T cd06636          97 VMEFCGAGSVTD-------LVK-------N-TK----GNALK--EDWIAYICR-----------------EILRGLAHLH  138 (282)
T ss_pred             EEEeCCCCcHHH-------HHH-------H-cc----CCCCC--HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899998766532       111       0 00    00001  011111111                 1222333332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|+++.||+++++ +.+.|+||..+.
T Consensus       139 --------~~~ivH~dl~~~nili~~~-~~~~l~dfg~~~  169 (282)
T cd06636         139 --------AHKVIHRDIKGQNVLLTEN-AEVKLVDFGVSA  169 (282)
T ss_pred             --------HCCcccCCCCHHHEEECCC-CCEEEeeCcchh
Confidence                    2358999999999999974 679999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=97.47  E-value=0.00065  Score=59.38  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      ...|..|....||++.......   .....+++|+......  .......|+.+++.+.++.-..+++..+.. +   ++
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv  102 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI  102 (307)
T ss_pred             eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            4677788788999987432100   0124688888765321  111224678888888666545556655432 2   88


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      ++|++|.++.
T Consensus       103 ~e~~~~~~L~  112 (307)
T cd05098         103 VEYASKGNLR  112 (307)
T ss_pred             EecCCCCcHH
Confidence            9998876553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03209 serine/threonine kinase US3; Provisional

Probab=97.47  E-value=0.00081  Score=60.38  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=76.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~  113 (267)
                      ..+..|..|....||++....    .+..+++|+.....  .   ..|..+++.+...++ +++++.+.  +  .+++++
T Consensus        69 ~~~~~lg~G~~g~Vy~~~~~~----~~~~valK~~~~~~--~---~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~  138 (357)
T PHA03209         69 TVIKTLTPGSEGRVFVATKPG----QPDPVVLKIGQKGT--T---LIEAMLLQNVNHPSV-IRMKDTLVSGAITCMVLPH  138 (357)
T ss_pred             EEEEEecCCCCeEEEEEEECC----CCceEEEEeCCccc--c---HHHHHHHHhCCCCCC-cChhheEEeCCeeEEEEEc
Confidence            356777888889999998643    35788899854322  1   368888888765444 33444432  2  167777


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      +.|.-.           ..    +.   ....+    .. ......+..                 .+...+..|-+   
T Consensus       139 ~~~~l~-----------~~----l~---~~~~~----~~-~~~~~~i~~-----------------qi~~aL~~LH~---  175 (357)
T PHA03209        139 YSSDLY-----------TY----LT---KRSRP----LP-IDQALIIEK-----------------QILEGLRYLHA---  175 (357)
T ss_pred             cCCcHH-----------HH----HH---hccCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            754110           00    10   00000    01 111222221                 12222333321   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       176 -----~~ivHrDlkp~Nill~~~-~~~kl~DfG~a~  205 (357)
T PHA03209        176 -----QRIIHRDVKTENIFINDV-DQVCIGDLGAAQ  205 (357)
T ss_pred             -----CCeecCCCCHHHEEECCC-CCEEEecCcccc
Confidence                 248999999999999874 679999999875

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=97.46  E-value=0.0006  Score=60.96  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++.+ +.+.|+||..|.
T Consensus       139 givHrDikp~Nill~~~-~~~kl~Dfg~~~  167 (355)
T cd07874         139 GIIHRDLKPSNIVVKSD-CTLKILDFGLAR  167 (355)
T ss_pred             CcccCCCChHHEEECCC-CCEEEeeCcccc
Confidence            58999999999999874 689999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=97.46  E-value=0.0017  Score=55.97  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       128 ~ivH~dikp~Nili~~~-~~~kl~dfg~~~  156 (288)
T cd07863         128 CIVHRDLKPENILVTSG-GQVKLADFGLAR  156 (288)
T ss_pred             CeecCCCCHHHEEECCC-CCEEECccCccc
Confidence            49999999999999874 689999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=97.46  E-value=0.0015  Score=55.51  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=74.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---------c-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---------F-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG  108 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---------~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~  108 (267)
                      ..+..|..+.+|++....    .+..+++|........         + ....+|+.+++.+...++ +++++...  +.
T Consensus         6 ~~ig~g~~~~v~~a~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~   80 (267)
T cd06628           6 ALIGSGSFGSVYLGMNAS----SGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENI-VQYLGSSLDADH   80 (267)
T ss_pred             ceeecCCCeEEEEEEecC----CCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCe-eeEEEEEEeCCc
Confidence            345667788999997432    3577888866433211         0 111356666766644333 34555443  22


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        ++++|++|.++..       ..       .+ +. ..     +  ...+..+..                 .+...++
T Consensus        81 ~~lv~e~~~~~~L~~-------~l-------~~-~~-~l-----~--~~~~~~~~~-----------------~l~~~l~  120 (267)
T cd06628          81 LNIFLEYVPGGSVAA-------LL-------NN-YG-AF-----E--ETLVRNFVR-----------------QILKGLN  120 (267)
T ss_pred             cEEEEEecCCCCHHH-------HH-------Hh-cc-Cc-----c--HHHHHHHHH-----------------HHHHHHH
Confidence              8899998865432       11       00 00 00     0  011111211                 1222333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+-        ...++|+|++|.||++++ .+.+.|.||..+.
T Consensus       121 ~lH--------~~~ivH~di~p~nil~~~-~~~~~l~dfg~~~  154 (267)
T cd06628         121 YLH--------NRGIIHRDIKGANILVDN-KGGIKISDFGISK  154 (267)
T ss_pred             HHH--------hcCcccccCCHHHEEEcC-CCCEEecccCCCc
Confidence            332        124899999999999987 4679999998653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=97.46  E-value=0.00057  Score=58.27  Aligned_cols=136  Identities=13%  Similarity=0.060  Sum_probs=75.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----cc-ccChHHHHHHHHHHHhCCCCceEEEEEC---Ce--
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG---DG--  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~---~~--  108 (267)
                      ...+..|..+.+|++....    .+..+.+|......     .. .....+|+.+++.+...++.+ .++...   +.  
T Consensus         7 ~~~lg~g~~g~vy~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~   81 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVD----TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQ-YYGCLRDRAEKTL   81 (266)
T ss_pred             cceecCCCCEEEEEEEEcC----CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeee-EEEEEEcCCCCEE
Confidence            4566777788999997543    35788888764321     11 111246888888886544443 344322   12  


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       ++++|++|.++..       ..       .   +..    . .. ......+..                 .+...+..
T Consensus        82 ~l~~e~~~~~~L~~-------~l-------~---~~~----~-l~-~~~~~~~~~-----------------qi~~~l~~  121 (266)
T cd06651          82 TIFMEYMPGGSVKD-------QL-------K---AYG----A-LT-ESVTRKYTR-----------------QILEGMSY  121 (266)
T ss_pred             EEEEeCCCCCcHHH-------HH-------H---HcC----C-CC-HHHHHHHHH-----------------HHHHHHHH
Confidence             6788888766532       01       0   000    0 00 001111111                 12222233


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +-        ...++|+|++|.||+++++ +.+.|.||+.+.
T Consensus       122 LH--------~~~i~H~~l~p~nil~~~~-~~~~l~dfg~~~  154 (266)
T cd06651         122 LH--------SNMIVHRDIKGANILRDSA-GNVKLGDFGASK  154 (266)
T ss_pred             HH--------hCCeeeCCCCHHHEEECCC-CCEEEccCCCcc
Confidence            32        2348999999999999874 679999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=97.45  E-value=0.00054  Score=58.66  Aligned_cols=136  Identities=15%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      +..|..|..+.+|++....    ++..+++|........  . .....|.++++.+...++. +++....  +.  ++++
T Consensus         4 ~~~i~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~v~e   78 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKL----TGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNII-KLLDVFRHKGDLYLVFE   78 (283)
T ss_pred             ceeeecCCCceEEEEEcCC----CCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcc-hHHHhhccCCCEEEEEe
Confidence            3557777788999997543    3578888876543211  1 1124677777777643332 2333222  22  7888


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |.+| .+..       ...       + +.  .+    .+ ......+..                 .+...+..|-   
T Consensus        79 ~~~~-~l~~-------~l~-------~-~~--~~----~~-~~~~~~~~~-----------------~i~~~l~~LH---  115 (283)
T cd05118          79 FMDT-DLYK-------LIK-------D-RQ--RG----LP-ESLIKSYLY-----------------QLLQGLAFCH---  115 (283)
T ss_pred             ccCC-CHHH-------HHH-------h-hc--cc----CC-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            8875 2210       110       0 00  00    00 011111111                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       116 -----~~~i~H~dl~p~nili~~~-~~~~l~df~~~~  146 (283)
T cd05118         116 -----SHGILHRDLKPENLLINTE-GVLKLADFGLAR  146 (283)
T ss_pred             -----HCCeeecCcCHHHEEECCC-CcEEEeeeeeeE
Confidence                 2348999999999999974 689999998763

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=97.45  E-value=0.00058  Score=57.79  Aligned_cols=137  Identities=14%  Similarity=0.091  Sum_probs=77.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ...|..|-...+|++....    .+..+++|+...... . .....+|+..+..+...++ ++++.....    .++++|
T Consensus         6 ~~~i~~g~~~~v~~~~~~~----~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKP----TGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-VKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             eeeeeecCCeEEEEEEEcC----CCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCe-eeEEEEEccCCeEEEEEEe
Confidence            3556666678899997543    357889998765432 1 1112467777777763333 444444332    288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ...   ..        .+.    . ......+..                 .+.+.+..+.    
T Consensus        81 ~~~~~L~~-------~l~---~~--------~~l----~-~~~~~~~~~-----------------~l~~~l~~lh----  116 (264)
T cd06623          81 MDGGSLAD-------LLK---KV--------GKI----P-EPVLAYIAR-----------------QILKGLDYLH----  116 (264)
T ss_pred             cCCCcHHH-------HHH---Hc--------CCC----C-HHHHHHHHH-----------------HHHHHHHHHh----
Confidence            99876642       111   00        000    0 011111111                 1112222221    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ....++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       117 ---~~~~~~H~~l~~~ni~~~~~-~~~~l~df~~~~  148 (264)
T cd06623         117 ---TKRHIIHRDIKPSNLLINSK-GEVKIADFGISK  148 (264)
T ss_pred             ---ccCCCccCCCCHHHEEECCC-CCEEEccCccce
Confidence               11568999999999999874 689999998665

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=97.45  E-value=0.0014  Score=55.66  Aligned_cols=136  Identities=14%  Similarity=0.087  Sum_probs=74.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccC-hHHHHHHHHHHHhCCCCceEEEEECC---eeEEEeecCC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFN-RDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEFIHAR  117 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~i~G~  117 (267)
                      |..|..+.+|++......  .+..+.+|+....... ... -.+|..+++.+...++. +.++....   .+|+||++|.
T Consensus         3 ig~G~~g~v~~~~~~~~~--~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii-~~~~~~~~~~~~lv~e~~~~~   79 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRK--KQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIV-RMIGVCEAEALMLVMEMASGG   79 (257)
T ss_pred             cCCCCcccEEEEEEecCC--CceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeE-EEEEEEcCCCeEEEEEeCCCC
Confidence            566767889987543211  2346888887544321 111 24678888887544433 34444432   2889999987


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCC
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQ  197 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  197 (267)
                      ++..       ...          ....   .  -....+..+..                 .+...+..+-+       
T Consensus        80 ~L~~-------~l~----------~~~~---~--~~~~~~~~~~~-----------------~i~~~l~~lH~-------  113 (257)
T cd05115          80 PLNK-------FLS----------GKKD---E--ITVSNVVELMH-----------------QVSMGMKYLEG-------  113 (257)
T ss_pred             CHHH-------HHH----------hCCC---C--CCHHHHHHHHH-----------------HHHHHHHHHHh-------
Confidence            6542       110          0000   0  00111221211                 12222333321       


Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ..++|+|++|+||+++++ +.+.++||..+.
T Consensus       114 -~~i~H~dlkp~nil~~~~-~~~kl~dfg~~~  143 (257)
T cd05115         114 -KNFVHRDLAARNVLLVNQ-HYAKISDFGLSK  143 (257)
T ss_pred             -cCeeecccchheEEEcCC-CcEEeccCCccc
Confidence             248999999999999874 678999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=97.44  E-value=0.0012  Score=59.75  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=47.6

Q ss_pred             EEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      ...|..|..+.||+++.-.. ..+.+..+.+|+...... .. ..-.+|+++++.+.++--..++++.+.++    +|+|
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E  119 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITE  119 (375)
T ss_pred             hheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeeh
Confidence            35567777899999863210 011245788888653321 11 11136888888886554344566655432    8899


Q ss_pred             eecCCCC
Q 024452          113 FIHARTL  119 (267)
Q Consensus       113 ~i~G~~l  119 (267)
                      |++|..+
T Consensus       120 ~~~~g~L  126 (375)
T cd05104         120 YCCYGDL  126 (375)
T ss_pred             hccCCcH
Confidence            9998765

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=97.44  E-value=0.00073  Score=58.67  Aligned_cols=29  Identities=24%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||++++ ++.+.++||..+.
T Consensus       150 ~i~H~dlkp~Nili~~-~~~~~l~dfg~~~  178 (296)
T cd05095         150 NFVHRDLATRNCLVGK-NYTIKIADFGMSR  178 (296)
T ss_pred             CeecccCChheEEEcC-CCCEEeccCcccc
Confidence            5899999999999986 4679999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=97.44  E-value=0.0016  Score=55.80  Aligned_cols=153  Identities=12%  Similarity=0.041  Sum_probs=78.7

Q ss_pred             EEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ..+..|....+|++...... ......+.+|+.......  .....+|+++++.+...++ .+++..+..    .++++|
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~lv~e~   89 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENI-VKFYGVCTEGDPPIMVFEY   89 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCc-hheeeEEecCCCeEEEEec
Confidence            44566767899998653210 113467889987543221  1122468888877754443 334444432    288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ....-+.....++.... .... -....+..+..                 .+...+..+-    
T Consensus        90 ~~~~~L~~-------~i~~~~~~~~~~~~~~~-~~~~-l~~~~~~~~~~-----------------~i~~~l~~lH----  139 (280)
T cd05049          90 MEHGDLNK-------FLRSHGPDAAFLKSPDS-PMGE-LTLSQLLQIAV-----------------QIASGMVYLA----  139 (280)
T ss_pred             CCCCCHHH-------HHHhcCCchhhhccccc-cccc-ccHHHHHHHHH-----------------HHHHHHHHHh----
Confidence            99876642       11111111111110000 0000 00011111111                 1122222221    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|+||+++.+ +.+.|+||..+.
T Consensus       140 ----~~~i~h~dlkp~nili~~~-~~~kl~d~g~~~  170 (280)
T cd05049         140 ----SQHFVHRDLATRNCLVGYD-LVVKIGDFGMSR  170 (280)
T ss_pred             ----hCCeeccccccceEEEcCC-CeEEECCcccce
Confidence                2358999999999999874 689999998664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=97.43  E-value=0.0016  Score=56.11  Aligned_cols=29  Identities=21%  Similarity=0.181  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       130 ~iiH~dlkp~Nil~~~~-~~~kl~Dfg~~~  158 (290)
T cd07862         130 RVVHRDLKPQNILVTSS-GQIKLADFGLAR  158 (290)
T ss_pred             CeeeCCCCHHHEEEcCC-CCEEEccccceE
Confidence            48999999999999874 689999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.43  E-value=0.00088  Score=58.39  Aligned_cols=29  Identities=28%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       158 ~ivH~dlkp~Nill~~~-~~~kl~DfG~~~  186 (304)
T cd05096         158 NFVHRDLATRNCLVGEN-LTIKIADFGMSR  186 (304)
T ss_pred             CccccCcchhheEEcCC-ccEEECCCccce
Confidence            48999999999999974 679999998774

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.43  E-value=0.00054  Score=61.29  Aligned_cols=155  Identities=14%  Similarity=0.063  Sum_probs=89.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC--c-ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG--V-EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~--~-~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      .+.|..|--..||+-....    .+..+.+|.-...  . +...+...|+.+++.+..-. .-.++.+..  +.  +|||
T Consensus        15 ~~~iG~GsfavVykg~h~~----~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~n-IV~l~d~~~~~~~i~lVME   89 (429)
T KOG0595|consen   15 SREIGSGSFAVVYKGRHKK----SGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPN-IVRLLDCIEDDDFIYLVME   89 (429)
T ss_pred             hhhccCcceEEEEEeEecc----CCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcc-eeeEEEEEecCCeEEEEEE
Confidence            3458889999999998764    2466667654433  1 12222358999999888322 223344433  22  8999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |.+|..+...       +          |+...     . .....+.|+.++                 ...++.|.+  
T Consensus        90 yC~gGDLs~y-------i----------~~~~~-----l-~e~t~r~Fm~QL-----------------A~alq~L~~--  127 (429)
T KOG0595|consen   90 YCNGGDLSDY-------I----------RRRGR-----L-PEATARHFMQQL-----------------ASALQFLHE--  127 (429)
T ss_pred             eCCCCCHHHH-------H----------HHcCC-----C-CHHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            9998776531       1          11110     0 012334454432                 233344443  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC-CC----CEEEEeecccCc-chHhHH--HHhhhhhheee
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE-TS----SITIIVSFTFLQ-NMLNFK--RACTKILLILT  247 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~-~~----~v~lIDwE~a~~-~~~~fD--~A~~~~~~~~~  247 (267)
                            ..++|+|++|.|||+... +.    .+.|=||.+|.+ .+..+-  .....++|.|.
T Consensus       128 ------~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPE  184 (429)
T KOG0595|consen  128 ------NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPE  184 (429)
T ss_pred             ------CCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHH
Confidence                  349999999999999863 12    367999999986 444443  23344444443

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=97.43  E-value=0.00077  Score=57.39  Aligned_cols=134  Identities=13%  Similarity=0.095  Sum_probs=73.0

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEeecC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFIHA  116 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i~G  116 (267)
                      .|..|..+.+|++....    .+..+++|+....... .....+|..+++.+..-++.+ .+...  .+.  ++++|++|
T Consensus        16 ~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~-~~~~~~~~~~~~lv~e~~~~   90 (267)
T cd06645          16 RIGSGTYGDVYKARNVN----TGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVA-YFGSYLRRDKLWICMEFCGG   90 (267)
T ss_pred             HhCCCCCeEEEEEEEcC----CCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeee-EEEEEEeCCEEEEEEeccCC
Confidence            45667778999987543    3578888886543221 111235677766664433332 33322  222  78899887


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      ..+..       ...       +   .    .. .+ ...+..+..                 .+...+..+.+      
T Consensus        91 ~~L~~-------~~~-------~---~----~~-~~-~~~~~~~~~-----------------~i~~~l~~lH~------  124 (267)
T cd06645          91 GSLQD-------IYH-------V---T----GP-LS-ESQIAYVSR-----------------ETLQGLYYLHS------  124 (267)
T ss_pred             CcHHH-------HHH-------h---c----CC-CC-HHHHHHHHH-----------------HHHHHHHHHHH------
Confidence            66542       110       0   0    00 00 011111111                 12223333322      


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ..++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       125 --~~i~H~dlkp~nili~~~-~~~~l~dfg~~~  154 (267)
T cd06645         125 --KGKMHRDIKGANILLTDN-GHVKLADFGVSA  154 (267)
T ss_pred             --CCeecCCCCHHHEEECCC-CCEEECcceeee
Confidence              248999999999999864 679999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=97.43  E-value=0.001  Score=58.53  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=25.0

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++.+ +.+.|+||+.+.
T Consensus       145 ~i~H~dL~p~Nil~~~~-~~~kl~dfg~~~  173 (317)
T cd06635         145 NMIHRDIKAGNILLTEP-GQVKLADFGSAS  173 (317)
T ss_pred             CcccCCCCcccEEECCC-CCEEEecCCCcc
Confidence            48999999999999874 679999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=97.42  E-value=0.00079  Score=58.35  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----ccC--hHHHHHHHHHHHhCCCCceEEEEE--CCe--e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----FFN--RDDEIRTFECMSSQGQGPRLLGRF--GDG--R  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~~d--r~~E~~~~~~l~~~gl~P~v~~~~--~~~--~  109 (267)
                      ...|..|..+.+|++....    .+..+.+|........    ..+  -..|+++++.+...++.+ +++..  .+.  +
T Consensus         5 ~~~lg~g~~~~vy~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~-~~~~~~~~~~~~l   79 (298)
T cd07841           5 GKKLGEGTYAVVYKARDKE----TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIG-LLDVFGHKSNINL   79 (298)
T ss_pred             eeeeeeccccEEEEEEECC----CCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChh-hhheeecCCEEEE
Confidence            3456778788999997542    3578899887543211    111  135777777776555544 33332  222  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|+ |..+..              .+   +....    ... ...+..+..                 .+.+.+..|.
T Consensus        80 v~e~~-~~~L~~--------------~i---~~~~~----~~~-~~~~~~~~~-----------------qi~~al~~lH  119 (298)
T cd07841          80 VFEFM-ETDLEK--------------VI---KDKSI----VLT-PADIKSYML-----------------MTLRGLEYLH  119 (298)
T ss_pred             EEccc-CCCHHH--------------HH---hccCC----CCC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            89998 433321              11   11110    011 111222221                 1222333332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        ..++|+|++|+||+++.+ +.+.|+||..+.
T Consensus       120 ~--------~~i~H~dl~p~nill~~~-~~~~l~dfg~~~  150 (298)
T cd07841         120 S--------NWILHRDLKPNNLLIASD-GVLKLADFGLAR  150 (298)
T ss_pred             h--------CCeeecCCChhhEEEcCC-CCEEEccceeee
Confidence            2        248999999999999974 689999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.42  E-value=0.00084  Score=65.55  Aligned_cols=138  Identities=15%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....   ... .....|..+++.+....+ .+++....  +.  +|
T Consensus         8 i~~~LG~G~fg~Vy~a~~~~----~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~I-v~~~~~~~~~~~~~lV   82 (669)
T cd05610           8 IVKPISRGAFGKVYLGRKKN----NSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFI-VHLYYSLQSANNVYLV   82 (669)
T ss_pred             EEEEEecCCCeEEEEEEECC----CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCc-CeEEEEEEECCEEEEE
Confidence            45677778788999998643    35788999875421   111 111356666666544333 34444432  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+..       +       +.+.+..       ..  .....+..                 .+...++.|-.
T Consensus        83 mEy~~g~~L~~-------l-------i~~~~~l-------~~--~~~~~i~~-----------------qil~aL~yLH~  122 (669)
T cd05610          83 MEYLIGGDVKS-------L-------LHIYGYF-------DE--EMAVKYIS-----------------EVALALDYLHR  122 (669)
T ss_pred             EeCCCCCCHHH-------H-------HHhcCCC-------CH--HHHHHHHH-----------------HHHHHHHHHHh
Confidence            99998865532       1       1111100       00  11111211                 12222333321


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..+..
T Consensus       123 --------~gIiHrDLKP~NILl~~~-g~vkL~DFGls~~  153 (669)
T cd05610         123 --------HGIIHRDLKPDNMLISNE-GHIKLTDFGLSKV  153 (669)
T ss_pred             --------CCEEeCCccHHHEEEcCC-CCEEEEeCCCCcc
Confidence                    259999999999999874 6899999998864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=97.42  E-value=0.002  Score=54.61  Aligned_cols=137  Identities=16%  Similarity=0.122  Sum_probs=75.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      -...+..|....+|.+....     ...+.+|..........+-.+|..+++.+...++ +++++....    .+++||+
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~-----~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKL-VQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             EeeEecCcccceEEEEEecC-----CCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCe-eeEEEEEccCCCcEEEEEcC
Confidence            34567778788999987532     3468888765432111111367777777654333 455655432    2889998


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..          +.....    .. ...+..+..                 .+...+..+-     
T Consensus        82 ~~~~l~~-------~i----------~~~~~~----~~-~~~~~~~~~-----------------~i~~~l~~lH-----  117 (256)
T cd05113          82 SNGCLLN-------YL----------REHGKR----FQ-PSQLLEMCK-----------------DVCEGMAYLE-----  117 (256)
T ss_pred             CCCcHHH-------HH----------HhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8765431       01          010000    00 111111211                 1222223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|+||+++++ +.+.++||+.+.
T Consensus       118 ---~~~i~H~dl~p~nili~~~-~~~kl~d~g~~~  148 (256)
T cd05113         118 ---SKQFIHRDLAARNCLVDDQ-GCVKVSDFGLSR  148 (256)
T ss_pred             ---hCCeeccccCcceEEEcCC-CCEEECCCccce
Confidence               2248999999999999874 679999998654

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=97.42  E-value=0.0015  Score=56.09  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++++ +.+.|+||..+.
T Consensus       124 ~i~h~dlkp~nil~~~~-~~~kl~dfg~~~  152 (283)
T cd06617         124 SVIHRDVKPSNVLINRN-GQVKLCDFGISG  152 (283)
T ss_pred             CeecCCCCHHHEEECCC-CCEEEeeccccc
Confidence            58999999999999874 689999998765

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.42  E-value=0.00065  Score=57.66  Aligned_cols=137  Identities=15%  Similarity=0.098  Sum_probs=74.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i  114 (267)
                      ..|..|....+|++....    .+..+++|........  ...-.+|+.+++.+....+ ++++...  .+.  ++++|+
T Consensus         7 ~~ig~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           7 GELGAGNSGVVSKVLHRP----TGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYI-VGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             HHhcCCCCeEEEEEEEcC----CCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCch-hhhheeeecCCEEEEEEEec
Confidence            345667778899998643    3577888876543211  1111356666666553233 3333332  222  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ...       + +.  .+.   +  ...+..+..                 .+...+..+      
T Consensus        82 ~~~~L~~-------~~~-------~-~~--~~~---~--~~~~~~~~~-----------------~l~~~l~~l------  116 (265)
T cd06605          82 DGGSLDK-------ILK-------E-VQ--GRI---P--ERILGKIAV-----------------AVLKGLTYL------  116 (265)
T ss_pred             CCCcHHH-------HHH-------H-cc--CCC---C--HHHHHHHHH-----------------HHHHHHHHH------
Confidence            9876642       111       0 00  000   0  011111111                 111222222      


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ..+..++|+|++|+||++++ ++.+.|+||..+.
T Consensus       117 -H~~~~i~H~dl~~~ni~~~~-~~~~~l~d~g~~~  149 (265)
T cd06605         117 -HEKHKIIHRDVKPSNILVNS-RGQIKLCDFGVSG  149 (265)
T ss_pred             -cCCCCeecCCCCHHHEEECC-CCCEEEeecccch
Confidence             22356999999999999997 4689999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=97.42  E-value=0.00097  Score=57.12  Aligned_cols=136  Identities=15%  Similarity=0.181  Sum_probs=74.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEE-CC--e---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRF-GD--G---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~-~~--~---~v  110 (267)
                      +..+..|..+.+|++....    .+..+++|......  ... .+..+|+.+++.+....+.+ +++.. ..  +   ++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~lv   78 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKK----TGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVR-LKEIVTSKGKGSIYMV   78 (287)
T ss_pred             eEEeccCCCeEEEEEEECC----CCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeee-heeeEecCCCCcEEEE
Confidence            4556777789999997643    35788888875432  111 12246788888776444433 33322 22  2   77


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|+++ .+.              ..+.   ....+    .. ...+..+..                 .+.+.++.|..
T Consensus        79 ~e~~~~-~l~--------------~~~~---~~~~~----~~-~~~~~~i~~-----------------~i~~al~~LH~  118 (287)
T cd07840          79 FEYMDH-DLT--------------GLLD---SPEVK----FT-ESQIKCYMK-----------------QLLEGLQYLHS  118 (287)
T ss_pred             eccccc-cHH--------------HHHh---ccCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            888865 211              1110   10000    00 011111211                 12222333322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.+.||..+.
T Consensus       119 --------~~~~h~dl~p~nil~~~~-~~~~l~d~g~~~  148 (287)
T cd07840         119 --------NGILHRDIKGSNILINND-GVLKLADFGLAR  148 (287)
T ss_pred             --------CCceeccCcHHHeEEcCC-CCEEEcccccee
Confidence                    248999999999999974 689999998665

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=97.41  E-value=0.001  Score=62.57  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             cEEEEccCCCCCCeeeeCCC-CCEEEEeecccCc
Q 024452          198 EIGFCHNDLQYGNIMIDEET-SSITIIVSFTFLQ  230 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~-~~v~lIDwE~a~~  230 (267)
                      ...+||+||+|.|||+.+.+ ..|.||||.-|+.
T Consensus       307 ~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~  340 (586)
T KOG0667|consen  307 ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCF  340 (586)
T ss_pred             hCCeeeccCChhheeeccCCcCceeEEecccccc
Confidence            35699999999999997543 3699999998875

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=97.41  E-value=0.0029  Score=54.07  Aligned_cols=80  Identities=20%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      .+..+..|..+.+|++...... ......+.+|........ .. ....|+++++.+...++ ++++..+.+    .+++
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~   87 (275)
T cd05046           9 EITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNV-VRLLGLCREAEPHYMIL   87 (275)
T ss_pred             eeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcce-eeeEEEECCCCcceEEE
Confidence            4566777777899999853211 112456788877543322 11 12478888888855444 456655543    2889


Q ss_pred             EeecCCCC
Q 024452          112 EFIHARTL  119 (267)
Q Consensus       112 e~i~G~~l  119 (267)
                      +|++|.++
T Consensus        88 e~~~~~~L   95 (275)
T cd05046          88 EYTDLGDL   95 (275)
T ss_pred             EecCCCcH
Confidence            99987655

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=97.41  E-value=0.00093  Score=60.24  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       123 ~ivH~dlkp~Nili~~~-~~~kL~Dfg~a~  151 (372)
T cd07853         123 GILHRDIKPGNLLVNSN-CVLKICDFGLAR  151 (372)
T ss_pred             CeeCCCCChHHEEECCC-CCEEecccccee
Confidence            48999999999999874 689999998764

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=97.41  E-value=0.004  Score=57.01  Aligned_cols=81  Identities=12%  Similarity=0.023  Sum_probs=48.2

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      ...|..|....||+++..... ......+.+|........  ...-.+|+++++.+..+--.+++++.+.+.    +|+|
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E  121 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITE  121 (400)
T ss_pred             hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEE
Confidence            345677777899998742110 011246888887543211  111136888888886554445666665432    8899


Q ss_pred             eecCCCCC
Q 024452          113 FIHARTLS  120 (267)
Q Consensus       113 ~i~G~~l~  120 (267)
                      |++|.++.
T Consensus       122 y~~~g~L~  129 (400)
T cd05105         122 YCFYGDLV  129 (400)
T ss_pred             ecCCCcHH
Confidence            99987663

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=97.41  E-value=0.00083  Score=56.38  Aligned_cols=132  Identities=13%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ..|....+|++....    .+..+++|+.......   ..+ ...|..+++.+...++.+ ++....  +.  ++++|++
T Consensus         2 g~G~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~v~e~~~   76 (250)
T cd05123           2 GKGSFGKVLLVRKKD----TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVK-LHYAFQTEEKLYLVLEYAP   76 (250)
T ss_pred             CCCCceEEEEEEECC----CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHH-HHHHeecCCeeEEEEecCC
Confidence            345567999987542    3578899987654211   111 146777777776444433 333322  22  7899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..              .+.+...        .. ...+..+..                 .+.+.+..+.+     
T Consensus        77 ~~~L~~--------------~l~~~~~--------l~-~~~~~~~~~-----------------qi~~~l~~lh~-----  111 (250)
T cd05123          77 GGELFS--------------HLSKEGR--------FS-EERARFYAA-----------------EIVLALEYLHS-----  111 (250)
T ss_pred             CCcHHH--------------HHHhcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHHH-----
Confidence            755421              0111000        00 011111211                 12222233321     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|+||+++.+ +.+.++||+.+.
T Consensus       112 ---~~~~H~~l~p~ni~~~~~-~~~~l~d~~~~~  141 (250)
T cd05123         112 ---LGIIYRDLKPENILLDAD-GHIKLTDFGLAK  141 (250)
T ss_pred             ---CCceecCCCcceEEEcCC-CcEEEeecCcce
Confidence               448999999999999874 689999998764

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=97.41  E-value=0.00084  Score=60.75  Aligned_cols=81  Identities=14%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      ...|..|....||++...... ......+.+|....... ... .-.+|+++++.+..+.-.+++++.+..+    +++|
T Consensus        43 ~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~e  122 (374)
T cd05106          43 GKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITE  122 (374)
T ss_pred             hheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHh
Confidence            456677778899998742111 11234688887654321 111 1136888888885554455566655432    7899


Q ss_pred             eecCCCCC
Q 024452          113 FIHARTLS  120 (267)
Q Consensus       113 ~i~G~~l~  120 (267)
                      |++|..+.
T Consensus       123 y~~~g~L~  130 (374)
T cd05106         123 YCCYGDLL  130 (374)
T ss_pred             hccCCcHH
Confidence            99987654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PHA03211 serine/threonine kinase US3; Provisional

Probab=97.41  E-value=0.0013  Score=61.49  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=74.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~i  114 (267)
                      -...|..|....||++....    .+..+++|.....     ...+|+++++.+...++.. ++.... ++   ++++++
T Consensus       173 i~~~Lg~G~~G~Vy~a~~~~----~~~~vavK~~~~~-----~~~~E~~iL~~L~HpnIv~-l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        173 IHRALTPGSEGCVFESSHPD----YPQRVVVKAGWYA-----SSVHEARLLRRLSHPAVLA-LLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             EEEEEccCCCeEEEEEEECC----CCCEEEEeccccc-----CHHHHHHHHHHCCCCCCCc-EEEEEEECCEEEEEEEcc
Confidence            34556777789999998653    3567888853211     1247999999887655543 444332 22   677776


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      .|. +          ...+.   ...+    +    .. ...+..+..+                 +...+..|-     
T Consensus       243 ~~~-L----------~~~l~---~~~~----~----l~-~~~~~~i~~q-----------------i~~aL~yLH-----  277 (461)
T PHA03211        243 RSD-L----------YTYLG---ARLR----P----LG-LAQVTAVARQ-----------------LLSAIDYIH-----  277 (461)
T ss_pred             CCC-H----------HHHHH---hcCC----C----CC-HHHHHHHHHH-----------------HHHHHHHHH-----
Confidence            541 1          11110   0000    0    01 1112222211                 122223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       278 ---~~gIvHrDLKP~NILl~~~-~~vkL~DFGla~  308 (461)
T PHA03211        278 ---GEGIIHRDIKTENVLVNGP-EDICLGDFGAAC  308 (461)
T ss_pred             ---HCCEEECcCCHHHEEECCC-CCEEEcccCCce
Confidence               2348999999999999874 679999999764

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.00052  Score=60.52  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..+||+|++|.|+|+|++.+.+.|-||.-|..
T Consensus       144 ~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~  175 (364)
T KOG0658|consen  144 HGICHRDIKPQNLLVDPDTGVLKICDFGSAKV  175 (364)
T ss_pred             cCcccCCCChheEEEcCCCCeEEeccCCccee
Confidence            56999999999999999888899999998754

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=97.39  E-value=0.0018  Score=55.05  Aligned_cols=141  Identities=15%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      ....+..|....+|++..... ++....+.+|........  ..+...|..+++.+...+ ..++++...+  .  +++|
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~-~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   86 (268)
T cd05063           9 KQKVIGAGEFGEVFRGILKMP-GRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN-IIRLEGVVTKFKPAMIITE   86 (268)
T ss_pred             EeeEecCCCCccEEEEEEecC-CCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCC-eeEEEEEEccCCCcEEEEE
Confidence            345567777889999986431 112246778876543211  111134666665554333 2344554432  1  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..       .       +.+ |...      . .......+..                 .+...+..+-+  
T Consensus        87 ~~~~~~L~~-------~-------~~~-~~~~------~-~~~~~~~~~~-----------------~l~~al~~lH~--  125 (268)
T cd05063          87 YMENGALDK-------Y-------LRD-HDGE------F-SSYQLVGMLR-----------------GIAAGMKYLSD--  125 (268)
T ss_pred             cCCCCCHHH-------H-------HHh-cCCC------C-CHHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            998865532       0       110 1100      0 0111112221                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.++||..+.
T Consensus       126 ------~~i~H~dlkp~Nili~~~-~~~kl~dfg~~~  155 (268)
T cd05063         126 ------MNYVHRDLAARNILVNSN-LECKVSDFGLSR  155 (268)
T ss_pred             ------CCeeccccchhhEEEcCC-CcEEECCCccce
Confidence                  248999999999999874 678999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=97.39  E-value=0.001  Score=57.67  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++++ +.+.|.||..+.
T Consensus       136 ~i~H~dl~p~nili~~~-~~~kl~dfg~~~  164 (302)
T cd07864         136 NFLHRDIKCSNILLNNK-GQIKLADFGLAR  164 (302)
T ss_pred             CeecCCCCHHHEEECCC-CcEEeCcccccc
Confidence            48999999999999874 679999998775

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=97.39  E-value=0.0017  Score=56.26  Aligned_cols=139  Identities=16%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ....|..|..+.+|++....    ++..+++|.......  ... ...+|+++++.+..-+ .++++....++    +|+
T Consensus         6 ~~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   80 (294)
T PLN00009          6 KVEKIGEGTYGVVYKARDRV----TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN-IVRLQDVVHSEKRLYLVF   80 (294)
T ss_pred             EEEEecCCCCEEEEEEEecC----CCcEEEEEehhhccccccchHHHHHHHHHHHhccCCC-EeeEEEEEecCCeEEEEE
Confidence            35667778889999997543    357899998643211  111 1236888888775433 34455554322    788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++| .+.          .    .+..-..    ..   .....+..+..                 .+...++.|-+ 
T Consensus        81 e~~~~-~l~----------~----~~~~~~~----~~---~~~~~~~~~~~-----------------qi~~aL~~LH~-  120 (294)
T PLN00009         81 EYLDL-DLK----------K----HMDSSPD----FA---KNPRLIKTYLY-----------------QILRGIAYCHS-  120 (294)
T ss_pred             ecccc-cHH----------H----HHHhCCC----CC---cCHHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            98754 111          0    1110000    00   00111222221                 12222233321 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+++.+.+.||+.+.
T Consensus       121 -------~~i~H~dl~p~nill~~~~~~~kl~dfg~~~  151 (294)
T PLN00009        121 -------HRVLHRDLKPQNLLIDRRTNALKLADFGLAR  151 (294)
T ss_pred             -------CCeeCCCCCcceEEEECCCCEEEEccccccc
Confidence                   2489999999999998644568899998774

>PTZ00284 protein kinase; Provisional

Probab=97.39  E-value=0.0013  Score=61.30  Aligned_cols=53  Identities=13%  Similarity=-0.029  Sum_probs=34.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQG   96 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~g   96 (267)
                      +..|..|-...||++....    .+..+.+|+.........+...|.++++.+....
T Consensus       134 ~~~lG~G~fg~V~~a~~~~----~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~  186 (467)
T PTZ00284        134 LSLLGEGTFGKVVEAWDRK----RKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQAD  186 (467)
T ss_pred             EEEEEeccCEEEEEEEEcC----CCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcC
Confidence            4456778789999997542    2467888986432221112246888888877654

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=97.39  E-value=0.0013  Score=55.31  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=73.9

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      .+..|....+|++....     +..+.+|........  .....+|+.+++.+...++ ++++....+    .++++|++
T Consensus         2 ~lg~g~~g~v~~~~~~~-----~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~v~e~~~   75 (251)
T cd05041           2 KIGKGNFGDVYKGVLKG-----NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNI-VKLIGVCVQKQPIYIVMELVP   75 (251)
T ss_pred             ccccCCCceEEEEEEeC-----CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCe-EEEEEEEecCCCeEEEEEcCC
Confidence            35667778999997532     578889986543211  1112357777776654333 344444432    28899988


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..              .+.   ....   . .. ...+..+..                 .+...+..+.      
T Consensus        76 ~~~l~~--------------~l~---~~~~---~-~~-~~~~~~~~~-----------------~~~~~l~~lH------  110 (251)
T cd05041          76 GGSLLT--------------FLR---KKKN---R-LT-VKKLLQMSL-----------------DAAAGMEYLE------  110 (251)
T ss_pred             CCcHHH--------------HHH---hcCC---C-CC-HHHHHHHHH-----------------HHHHHHHHHH------
Confidence            865521              010   1000   0 00 111111111                 1112222222      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       111 --~~~i~h~di~p~nili~~~-~~~~l~d~g~~~  141 (251)
T cd05041         111 --SKNCIHRDLAARNCLVGEN-NVLKISDFGMSR  141 (251)
T ss_pred             --hCCEehhhcCcceEEEcCC-CcEEEeeccccc
Confidence              2358999999999999874 689999998764

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=97.38  E-value=0.0015  Score=55.64  Aligned_cols=31  Identities=32%  Similarity=0.294  Sum_probs=26.6

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..++|+|+++.||+++++ +.+.++||..+..
T Consensus       133 ~~i~H~dl~~~nil~~~~-~~~~l~dfg~~~~  163 (269)
T cd08528         133 KRIVHRDLTPNNIMLGED-DKVTITDFGLAKQ  163 (269)
T ss_pred             CceeecCCCHHHEEECCC-CcEEEecccceee
Confidence            358999999999999874 6899999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.38  E-value=0.0013  Score=59.67  Aligned_cols=142  Identities=18%  Similarity=0.126  Sum_probs=82.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----c-ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce-
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----E-VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG-  108 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~-  108 (267)
                      .-...+..|--+.|+......    .+..+.+|+.....    . ... ...+|+.+++.+..+.---+++.+..  .. 
T Consensus        20 ~~~~~lG~GsfgkV~~a~~~~----t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~   95 (370)
T KOG0583|consen   20 ELGRTLGSGSFGKVKLAKHRL----TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKI   95 (370)
T ss_pred             eeeeeecCCCCeeEEEeeecc----CCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeE
Confidence            345667888888999986543    24788888765531    1 111 22479989988885532233333332  22 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||..|..+-              ..+.+ +...      ..  ...+.|..+                 +...++.
T Consensus        96 ~ivmEy~~gGdL~--------------~~i~~-~g~l------~E--~~ar~~F~Q-----------------lisav~y  135 (370)
T KOG0583|consen   96 YIVMEYCSGGDLF--------------DYIVN-KGRL------KE--DEARKYFRQ-----------------LISAVAY  135 (370)
T ss_pred             EEEEEecCCccHH--------------HHHHH-cCCC------Ch--HHHHHHHHH-----------------HHHHHHH
Confidence             889998872211              11111 1100      00  122223322                 2223333


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      +        +..+++|+|+++.|||++.+.+.+.|+||+++...
T Consensus       136 ~--------H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen  136 C--------HSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             H--------HhCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            3        33469999999999999974368999999999865

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=97.37  E-value=0.0016  Score=56.64  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=44.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~  113 (267)
                      ...|..|....+|++.....  +....+.+|.......  ...+...|.+++..+..+.-..++++...+ +   ++++|
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~--~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~   84 (297)
T cd05089           7 EDVIGEGNFGQVIRAMIKKD--GLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEY   84 (297)
T ss_pred             eeeecCCCcceEEEEEecCC--CCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEe
Confidence            34567777889999875421  1122355665443211  111224678888777554333455555432 2   78999


Q ss_pred             ecCCCCC
Q 024452          114 IHARTLS  120 (267)
Q Consensus       114 i~G~~l~  120 (267)
                      .++.++.
T Consensus        85 ~~~~~L~   91 (297)
T cd05089          85 APYGNLL   91 (297)
T ss_pred             cCCCcHH
Confidence            8876553

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=97.37  E-value=0.001  Score=56.32  Aligned_cols=139  Identities=15%  Similarity=0.119  Sum_probs=76.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      ...+..|..+.+|++....    .+..+++|....... . .-+..+|+..++.+...++ ++++....  +.  +++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           6 IEVIGVGATAVVYAAICLP----NNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNV-VKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             eeeecCCCCeEEEEEEEcC----CCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCE-EEEEEEEeeCCEEEEEEec
Confidence            4456677788999997543    357888888754321 1 1122467777776654333 33343332  22  78899


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+.+.+.   ...  . .......+..                 .+...+..+.    
T Consensus        81 ~~~~~l~~--------------~~~~~~~---~~~--~-~~~~~~~~~~-----------------ql~~al~~lh----  119 (267)
T cd06610          81 LSGGSLLD--------------IMKSSYP---RGG--L-DEAIIATVLK-----------------EVLKGLEYLH----  119 (267)
T ss_pred             cCCCcHHH--------------HHHHhcc---cCC--C-CHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            88765432              1111111   000  0 0111222221                 1222223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       120 ----~~~i~h~~l~p~ni~~~~~-~~~~l~df~~~~  150 (267)
T cd06610         120 ----SNGQIHRDIKAGNILLGED-GSVKIADFGVSA  150 (267)
T ss_pred             ----hCCeecCCCCHHhEEEcCC-CCEEEcccchHH
Confidence                2348999999999999974 679999998764

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=97.37  E-value=0.0021  Score=54.85  Aligned_cols=140  Identities=14%  Similarity=0.079  Sum_probs=74.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      ...+..|..+.+|++..... +.....+.+|....... . ...-..|..+++.+..-++ .+++....++    +++||
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-~~~~~~~~~~~~~~lv~e~   86 (269)
T cd05065           9 EEVIGAGEFGEVCRGRLKLP-GKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNI-IHLEGVVTKSRPVMIITEF   86 (269)
T ss_pred             EeEecCCCCCeEEEEEEecC-CCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCc-ceEEEEECCCCceEEEEec
Confidence            34456777789999876431 11124688888754321 1 1111356777766644333 3445544322    78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ...          ...  .  ... ...+..+..                 .+...+..+-    
T Consensus        87 ~~~~~L~~-------~l~----------~~~--~--~~~-~~~~~~i~~-----------------~l~~al~~lH----  123 (269)
T cd05065          87 MENGALDS-------FLR----------QND--G--QFT-VIQLVGMLR-----------------GIAAGMKYLS----  123 (269)
T ss_pred             CCCCcHHH-------HHh----------hCC--C--CCC-HHHHHHHHH-----------------HHHHHHHHHH----
Confidence            98765531       110          000  0  001 111111211                 1122223332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       124 ----~~g~~H~dl~p~nili~~~-~~~kl~dfg~~~  154 (269)
T cd05065         124 ----EMNYVHRDLAARNILVNSN-LVCKVSDFGLSR  154 (269)
T ss_pred             ----HCCEeecccChheEEEcCC-CcEEECCCcccc
Confidence                2358999999999999874 678999998663

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=97.37  E-value=0.0022  Score=54.34  Aligned_cols=29  Identities=21%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|.||..+.
T Consensus       115 ~i~H~dlkp~nill~~~-~~~kl~Dfg~~~  143 (257)
T cd05116         115 NFVHRDLAARNVLLVTQ-HYAKISDFGLSK  143 (257)
T ss_pred             CEeecccchhhEEEcCC-CeEEECCCcccc
Confidence            48999999999999874 678999998764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=97.37  E-value=0.0027  Score=55.32  Aligned_cols=81  Identities=15%  Similarity=0.116  Sum_probs=48.9

Q ss_pred             EEEecCceeeeeEEEEeCC---CCCCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           40 VIPLKGAMTNEVYQIAWPA---KNNGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~---~~~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      ..+|..|....||++....   ....++..+++|......  ...-+..+|..+++.+.++.-..++++.+..    .++
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv   99 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI   99 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEE
Confidence            3677788889999986421   001123468888875432  1111224788888888666544555655432    288


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      ++|++|.++.
T Consensus       100 ~e~~~~~~L~  109 (304)
T cd05101         100 VEYASKGNLR  109 (304)
T ss_pred             EecCCCCcHH
Confidence            9999876553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=97.36  E-value=0.0015  Score=57.13  Aligned_cols=137  Identities=13%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEE--C--C--ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRF--G--D--GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~--~--~~  109 (267)
                      .+..|..|....+|++....    .+..+++|......   .......+|+.+++.+...++. +++...  .  +  .+
T Consensus        11 ~~~~ig~g~~~~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~~~l   85 (309)
T cd07845          11 KLNRIGEGTYGIVYRARDTT----SGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIV-ELKEVVVGKHLDSIFL   85 (309)
T ss_pred             EeeeeeecCCEEEEEEEECC----CCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCc-ceEEEEecCCCCeEEE
Confidence            45566788888999998543    35788888764321   1112224688888888765544 344332  2  1  17


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|.+| .+.              ..+.+.+   .+    . ....+..+..                 .+...+..+.
T Consensus        86 v~e~~~~-~l~--------------~~l~~~~---~~----l-~~~~~~~~~~-----------------qi~~~l~~lH  125 (309)
T cd07845          86 VMEYCEQ-DLA--------------SLLDNMP---TP----F-SESQVKCLML-----------------QLLRGLQYLH  125 (309)
T ss_pred             EEecCCC-CHH--------------HHHHhcc---cC----C-CHHHHHHHHH-----------------HHHHHHHHHH
Confidence            7888764 111              1111111   00    0 0111221221                 1222333333


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        ..++|+|++|+||+++++ +.+.|+||..+.
T Consensus       126 ~--------~~i~H~dl~p~nil~~~~-~~~kL~dfg~~~  156 (309)
T cd07845         126 E--------NFIIHRDLKVSNLLLTDK-GCLKIADFGLAR  156 (309)
T ss_pred             h--------CCeecCCCCHHHEEECCC-CCEEECccceee
Confidence            2        238999999999999874 689999998765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=97.36  E-value=0.002  Score=57.46  Aligned_cols=57  Identities=11%  Similarity=0.054  Sum_probs=36.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCC
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQG   98 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~   98 (267)
                      ..+..|..|..+.+|++....    .+..+++|.......  ... ...+|+++++.+...++.
T Consensus        18 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   77 (343)
T cd07880          18 RDLKQVGSGAYGTVCSALDRR----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVI   77 (343)
T ss_pred             EEEEEeeecCCeEEEEEEECC----CCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcc
Confidence            356778888889999997542    357889987643211  111 113688888888655554

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=97.35  E-value=0.00023  Score=61.39  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=75.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      +..|..|..+.+|++....    .+..+++|...... .. ...-.+|+.+++.+...++ .+.++.+.  +.  +++||
T Consensus         6 ~~~ig~g~~g~v~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           6 LDELGKGNYGSVYKVLHRP----TGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYI-VDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             hhhhcccCCeEEEEEEEcC----CCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcH-HhhhhheecCCeEEEEEee
Confidence            3456778788999998643    35788888654321 11 1111367777776644333 23333221  22  78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       +..          .... ... . ....+..+..                 .+...+..|.+   
T Consensus        81 ~~~~~l~~-------~~~----------~~~~-~~~-~-~~~~~~~~~~-----------------~i~~~l~~LH~---  120 (286)
T cd06622          81 MDAGSLDK-------LYA----------GGVA-TEG-I-PEDVLRRITY-----------------AVVKGLKFLKE---  120 (286)
T ss_pred             cCCCCHHH-------HHH----------hccc-cCC-C-CHHHHHHHHH-----------------HHHHHHHHHHh---
Confidence            99876532       111          0000 000 0 0011111111                 12223333321   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.||+++. ++.+.|+||..+.
T Consensus       121 ----~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~  151 (286)
T cd06622         121 ----EHNIIHRDVKPTNVLVNG-NGQVKLCDFGVSG  151 (286)
T ss_pred             ----cCCEeeCCCCHHHEEECC-CCCEEEeecCCcc
Confidence                235999999999999987 4689999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.35  E-value=0.00076  Score=56.96  Aligned_cols=32  Identities=13%  Similarity=0.030  Sum_probs=25.8

Q ss_pred             EEEEccCCCCCCeeeeCCCC------CEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETS------SITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~------~v~lIDwE~a~~  230 (267)
                      ..++|+|++|.||+++.++.      .+.+.||..+..
T Consensus       120 ~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~  157 (259)
T cd05037         120 KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPIT  157 (259)
T ss_pred             CCeecccCccceEEEecCccccCCceeEEeCCCCcccc
Confidence            34899999999999986421      489999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=97.35  E-value=0.0013  Score=56.59  Aligned_cols=29  Identities=24%  Similarity=0.148  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.++||..+.
T Consensus       117 ~i~H~di~p~nili~~~-~~~kl~dfg~~~  145 (278)
T cd05606         117 FVVYRDLKPANILLDEH-GHVRISDLGLAC  145 (278)
T ss_pred             CEEcCCCCHHHEEECCC-CCEEEccCcCcc
Confidence            49999999999999874 679999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=97.35  E-value=0.00057  Score=57.69  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           44 KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        44 ~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ..|....+|++....    .+..+++|+......   .. .....|.+.++.+...++ +++++...  +.  ++++|++
T Consensus         2 g~g~~~~vy~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-~~~~~~~~~~~~~~lv~e~~~   76 (265)
T cd05579           2 SKGAYGRVFLAKKKS----TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV-VKLYYSFQGKKNLYLVMEYLP   76 (265)
T ss_pred             CCCCceEEEEEEECC----CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcch-hHHHHheecCcEEEEEEecCC
Confidence            456667899998643    357899998754321   11 112356666666653333 22333322  21  7899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       ..       .+...  .     +  ......+..+                 +.+.+..+.      
T Consensus        77 ~~~L~~-------~l-------~~~~~--~-----~--~~~~~~i~~q-----------------i~~~L~~lH------  110 (265)
T cd05579          77 GGDLAS-------LL-------ENVGS--L-----D--EDVARIYIAE-----------------IVLALEYLH------  110 (265)
T ss_pred             CCcHHH-------HH-------HHcCC--C-----C--HHHHHHHHHH-----------------HHHHHHHHH------
Confidence            865532       11       11110  0     0  0111112211                 222223332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        ...++|+|++|.||+++++ +.+.++||..+..
T Consensus       111 --~~~i~H~di~~~nil~~~~-~~~~l~dfg~~~~  142 (265)
T cd05579         111 --SNGIIHRDLKPDNILIDSN-GHLKLTDFGLSKV  142 (265)
T ss_pred             --HcCeecCCCCHHHeEEcCC-CCEEEEecccchh
Confidence              2358999999999999974 6899999987653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=97.34  E-value=0.00045  Score=58.79  Aligned_cols=139  Identities=14%  Similarity=0.065  Sum_probs=75.1

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e  112 (267)
                      ..|..|..+.+|++....    ++..+++|......    ....+...|..+++.+...++.+ ++..+  .+.  ++++
T Consensus         8 ~~ig~g~~g~v~~~~~~~----~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~-~~~~~~~~~~~~~v~e   82 (267)
T cd08229           8 KKIGRGQFSEVYRATCLL----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIK-YYASFIEDNELNIVLE   82 (267)
T ss_pred             hhhcccCCeEEEEEeecC----CCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhh-hhheeEeCCeEEEEEE
Confidence            345667778999997542    35788888654311    11111235777777775444433 33332  222  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ...       .+...   ...  -.......+..                 .+...+..|.   
T Consensus        83 ~~~~~~L~~-------~~~-------~~~~~---~~~--~~~~~~~~~~~-----------------~i~~~l~~LH---  123 (267)
T cd08229          83 LADAGDLSR-------MIK-------HFKKQ---KRL--IPEKTVWKYFV-----------------QLCSALEHMH---  123 (267)
T ss_pred             ecCCCCHHH-------HHH-------Hhhcc---CCC--CCHHHHHHHHH-----------------HHHHHHHHHH---
Confidence            998876532       111       11000   000  01111222221                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++.+ +.+.+.||+.+.
T Consensus       124 -----~~~i~H~dl~p~nili~~~-~~~~l~dfg~~~  154 (267)
T cd08229         124 -----SRRVMHRDIKPANVFITAT-GVVKLGDLGLGR  154 (267)
T ss_pred             -----HCCeecCCCCHHHEEEcCC-CCEEECcchhhh
Confidence                 2358999999999999874 679999998653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=97.34  E-value=0.0023  Score=54.05  Aligned_cols=136  Identities=18%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ...+..|....+|++....     +..+.+|+.........+...|.++++.+...++. +++.....    .++++|++
T Consensus         9 ~~~ig~g~~g~v~~~~~~~-----~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112           9 VQEIGSGQFGLVWLGYWLE-----KRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLV-QLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             EeeecCcccceEEEEEEeC-----CCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCee-eEEEEEccCCceEEEEEcCC
Confidence            4556777778999987532     46788898654321111224688888887654433 34544432    27899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..       ..          +....     +-..+....+..+                 +...+..+.      
T Consensus        83 ~~~L~~-------~~----------~~~~~-----~~~~~~~~~~~~~-----------------l~~~l~~lH------  117 (256)
T cd05112          83 HGCLSD-------YL----------RAQRG-----KFSQETLLGMCLD-----------------VCEGMAYLE------  117 (256)
T ss_pred             CCcHHH-------HH----------HhCcc-----CCCHHHHHHHHHH-----------------HHHHHHHHH------
Confidence            865431       00          11000     0011112222211                 112222332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++. ++.+.++||+.+.
T Consensus       118 --~~~i~h~dl~p~ni~i~~-~~~~~l~d~g~~~  148 (256)
T cd05112         118 --SSNVIHRDLAARNCLVGE-NQVVKVSDFGMTR  148 (256)
T ss_pred             --HCCccccccccceEEEcC-CCeEEECCCccee
Confidence              124899999999999986 4678999998764

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=97.33  E-value=0.0032  Score=55.18  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=48.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC-e---e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~  109 (267)
                      -...+..|....+|+++.....   ......+.+|+......  .......|..+++.+.++.-..++++.+.+ +   +
T Consensus        16 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (314)
T cd05099          16 LGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYV   95 (314)
T ss_pred             eeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEE
Confidence            4566788888999999642100   01235677888654321  111124677777777555444556655432 2   7


Q ss_pred             EEEeecCCCCC
Q 024452          110 VEEFIHARTLS  120 (267)
Q Consensus       110 v~e~i~G~~l~  120 (267)
                      +++|++|.++.
T Consensus        96 v~e~~~~g~L~  106 (314)
T cd05099          96 IVEYAAKGNLR  106 (314)
T ss_pred             EEecCCCCcHH
Confidence            89999887653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=97.33  E-value=0.0018  Score=55.28  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      ...+..|.-+.+|++...... +..+..+.+|+.......  .....+|+.+++.+...++ .++++...++    +++|
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-~~~~~~~~~~~~~~~v~e   89 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHV-VRLLGVVSTGQPTLVVME   89 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCce-eEEEEEEcCCCCcEEEEe
Confidence            455677777899998764211 113467889987543211  1111356666665543333 3455554422    7899


Q ss_pred             eecCCCCC
Q 024452          113 FIHARTLS  120 (267)
Q Consensus       113 ~i~G~~l~  120 (267)
                      |.+|.++.
T Consensus        90 ~~~~~~L~   97 (277)
T cd05032          90 LMAKGDLK   97 (277)
T ss_pred             cCCCCCHH
Confidence            98876653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=97.33  E-value=0.00054  Score=58.81  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++++||++++ .+.+.|.||..+.
T Consensus       119 ~i~H~dl~~~ni~i~~-~~~~~l~d~~~~~  147 (283)
T cd07830         119 GFFHRDLKPENLLVSG-PEVVKIADFGLAR  147 (283)
T ss_pred             CcccCCCChhhEEEcC-CCCEEEeecccce
Confidence            4899999999999997 4789999997653

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=97.33  E-value=0.0013  Score=56.61  Aligned_cols=81  Identities=16%  Similarity=0.069  Sum_probs=46.0

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e  112 (267)
                      -...+..|..+.+|++..... ....+..+.+|........ ..+..+|.++++.+...++. ++++...+    .++++
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~e   87 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIV-RFYGVCTEGRPLLMVFE   87 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCc-eEEEEEecCCceEEEEe
Confidence            355667777889999864210 0112456667765433221 11224678888777554443 34544432    27899


Q ss_pred             eecCCCCC
Q 024452          113 FIHARTLS  120 (267)
Q Consensus       113 ~i~G~~l~  120 (267)
                      |++|.++.
T Consensus        88 ~~~~~~L~   95 (280)
T cd05092          88 YMRHGDLN   95 (280)
T ss_pred             cCCCCCHH
Confidence            99887654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=97.32  E-value=0.0027  Score=54.36  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEEC-C--e---eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFG-D--G---RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~--~---~v~  111 (267)
                      +..+..|..+.+|++....    ++..+.+|.......  .......|..+++.+..+.-.+++++... +  +   +|+
T Consensus         4 ~~~lg~g~~~~v~~~~~~~----~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRK----TGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             EeeccccccceEEEEEEcC----CCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            4567777788999997543    357888888754321  12222357777777765543444555432 2  2   778


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|.+|. +.          ..+       .....     .-....+..+..+                 +...++.|.  
T Consensus        80 e~~~~~-l~----------~~l-------~~~~~-----~~~~~~~~~~~~q-----------------i~~~L~~LH--  117 (282)
T cd07831          80 ELMDMN-LY----------ELI-------KGRKR-----PLPEKRVKSYMYQ-----------------LLKSLDHMH--  117 (282)
T ss_pred             ecCCcc-HH----------HHH-------HhccC-----CCCHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            887652 11          111       00000     0011112222211                 222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||++++  +.+.|.||..+.
T Consensus       118 ------~~~i~H~dl~p~ni~l~~--~~~kl~dfg~~~  147 (282)
T cd07831         118 ------RNGIFHRDIKPENILIKD--DILKLADFGSCR  147 (282)
T ss_pred             ------HCCceecccCHHHEEEcC--CCeEEEeccccc
Confidence                  124899999999999986  689999998664

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=97.32  E-value=0.0014  Score=57.11  Aligned_cols=75  Identities=5%  Similarity=-0.041  Sum_probs=45.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECC--e---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD--G---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~--~---~v  110 (267)
                      ...|..|..+.+|++.....  +.+..+.+|......   .... ...+|+.+++.+..-++.+-.-.....  .   +|
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~--~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   82 (316)
T cd07842           5 EGCIGRGTYGRVYKAKRKNG--KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLL   82 (316)
T ss_pred             EEEeccCCcEEEEEEEecCC--CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEE
Confidence            34577788899999985421  135789999876532   1111 124688888887655554432222222  2   78


Q ss_pred             EEeecC
Q 024452          111 EEFIHA  116 (267)
Q Consensus       111 ~e~i~G  116 (267)
                      +||+++
T Consensus        83 ~e~~~~   88 (316)
T cd07842          83 FDYAEH   88 (316)
T ss_pred             EeCCCc
Confidence            888765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=97.31  E-value=0.0012  Score=56.72  Aligned_cols=133  Identities=13%  Similarity=0.074  Sum_probs=73.2

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cccc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      .|..|....+|++....    .+..+++|+..... .... ...+|+..++.+...++ ++.+..+.+    .+|+||++
T Consensus        11 ~l~~g~~~~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642          11 RIGKGSFGEVYKGIDNR----TKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYI-TRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HhcCCCCeeEEEEEEcC----CCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCcc-HhhhcccccCCceEEEEEccC
Confidence            35667778999986532    24678889865332 1111 12467777766654333 334443322    28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+..       ..          +...      .. .........                 .+...+..+-      
T Consensus        86 ~~~L~~-------~~----------~~~~------~~-~~~~~~~~~-----------------~i~~~l~~lH------  118 (277)
T cd06642          86 GGSALD-------LL----------KPGP------LE-ETYIATILR-----------------EILKGLDYLH------  118 (277)
T ss_pred             CCcHHH-------Hh----------hcCC------CC-HHHHHHHHH-----------------HHHHHHHHHh------
Confidence            865431       00          0000      00 011111111                 1222222332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|+||+++++ +.+.+.||..+.
T Consensus       119 --~~~ivH~dl~p~ni~i~~~-~~~~l~dfg~~~  149 (277)
T cd06642         119 --SERKIHRDIKAANVLLSEQ-GDVKLADFGVAG  149 (277)
T ss_pred             --cCCeeccCCChheEEEeCC-CCEEEccccccc
Confidence              2358999999999999874 679999998764

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PHA03212 serine/threonine kinase US3; Provisional

Probab=97.30  E-value=0.0068  Score=55.26  Aligned_cols=132  Identities=11%  Similarity=0.039  Sum_probs=75.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      .-+..|..|..+.||++....    .+..+.+|.....  ..   .+|+++++.+..-++.. ++..+.  ..  +++++
T Consensus        95 ~~~~~lg~G~~g~V~~~~d~~----~~~~vaiK~~~~~--~~---~~E~~il~~l~HpnIv~-~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         95 SILETFTPGAEGFAFACIDNK----TCEHVVIKAGQRG--GT---ATEAHILRAINHPSIIQ-LKGTFTYNKFTCLILPR  164 (391)
T ss_pred             EEEEEEcCCCCeEEEEEEECC----CCCEEEEechhhh--hh---HHHHHHHHhCCCCCCCC-EeEEEEECCeeEEEEec
Confidence            346677888889999997543    3578888864321  12   47999999887655443 444332  21  56666


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      +.|. +          ..    .+..-+.        .. ...+..+..                 .+...+..+-    
T Consensus       165 ~~~~-L----------~~----~l~~~~~--------l~-~~~~~~i~~-----------------qi~~aL~ylH----  199 (391)
T PHA03212        165 YKTD-L----------YC----YLAAKRN--------IA-ICDILAIER-----------------SVLRAIQYLH----  199 (391)
T ss_pred             CCCC-H----------HH----HHHhcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH----
Confidence            5431 1          11    1111000        01 111222221                 1222233332    


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ...++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       200 ----~~~IvHrDiKP~NIll~~~-~~vkL~DFG~a~  230 (391)
T PHA03212        200 ----ENRIIHRDIKAENIFINHP-GDVCLGDFGAAC  230 (391)
T ss_pred             ----hCCcccCCCChHhEEEcCC-CCEEEEeCCccc
Confidence                1248999999999999874 689999999874

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=97.30  E-value=0.0015  Score=56.28  Aligned_cols=81  Identities=16%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      ....+..|.-+.+|++...... +.....+.+|+...... ... +-.+|+.+++.+...++ .++++...+    .+++
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-v~~~~~~~~~~~~~lv~   87 (288)
T cd05050           9 YVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNI-VKLLGVCAVGKPMCLLF   87 (288)
T ss_pred             ecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCch-heEEEEEcCCCccEEEE
Confidence            3456677778899999753200 11346788887654321 111 11357777777644333 345555443    2889


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|.+|.++.
T Consensus        88 e~~~~~~L~   96 (288)
T cd05050          88 EYMAYGDLN   96 (288)
T ss_pred             ecCCCCCHH
Confidence            999886553

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=97.30  E-value=0.0024  Score=54.10  Aligned_cols=136  Identities=18%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ..+..|..+.+|++....     +..+.+|+...... .......|..+++.+...++. ++++...+    .+++||.+
T Consensus        12 ~~ig~g~~~~vy~~~~~~-----~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~lv~e~~~   85 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKN-----RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLI-SLFAVCSVGEPVYIITELME   85 (261)
T ss_pred             hhhccCCCccEEEeEecC-----CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchh-heeeeEecCCCeEEEEeecc
Confidence            445677788999997542     47788888654332 111224677777777543333 34443332    28899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..-       .       .   ...  ..  .-....+..+..+                 +...+..+.      
T Consensus        86 ~~~L~~~-------~-------~---~~~--~~--~~~~~~~~~~~~~-----------------i~~al~~lH------  121 (261)
T cd05148          86 KGSLLAF-------L-------R---SPE--GQ--VLPVASLIDMACQ-----------------VAEGMAYLE------  121 (261)
T ss_pred             cCCHHHH-------H-------h---cCC--CC--CCCHHHHHHHHHH-----------------HHHHHHHHH------
Confidence            8765421       1       0   000  00  0111122222221                 222223332      


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ...++|+|++|.||+++++ +.+.+.||+.+.
T Consensus       122 --~~~i~h~dl~~~nilv~~~-~~~kl~d~g~~~  152 (261)
T cd05148         122 --EQNSIHRDLAARNILVGED-LVCKVADFGLAR  152 (261)
T ss_pred             --HCCeeccccCcceEEEcCC-ceEEEccccchh
Confidence              1248999999999999874 678999999874

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=97.29  E-value=0.0063  Score=51.50  Aligned_cols=140  Identities=15%  Similarity=0.088  Sum_probs=76.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--c-c-ccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--E-V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~  111 (267)
                      .+.+..|....+|++....    ++..+++|......  . . ...-.+|+.+++.+...++ .+++..+.  +  .+++
T Consensus         7 ~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i-~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLL----DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNV-IKYLASFIENNELNIVL   81 (267)
T ss_pred             eeeeccCCceEEEEEEEcC----CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCe-eeeeeeeecCCeEEEEE
Confidence            3556777788999998642    35778888654211  1 1 1111367777777744333 33333322  2  2889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ..       ...   .. .. ..-.......|..+                 +...+..|.  
T Consensus        82 e~~~~~~L~~-------~l-------~~~---~~-~~-~~~~~~~~~~~~~~-----------------l~~~l~~lh--  123 (267)
T cd08224          82 ELADAGDLSR-------MI-------KHF---KK-QK-RLIPERTIWKYFVQ-----------------LCSALEHMH--  123 (267)
T ss_pred             ecCCCCCHHH-------HH-------HHh---cc-cC-CCcCHHHHHHHHHH-----------------HHHHHHHHH--
Confidence            9998865532       11       110   00 00 00011222222221                 122223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|.||+++.+ +.+.++||+.+.
T Consensus       124 ------~~~i~h~dl~p~nil~~~~-~~~~l~d~~~~~  154 (267)
T cd08224         124 ------SKRIMHRDIKPANVFITAT-GVVKLGDLGLGR  154 (267)
T ss_pred             ------hCCEecCCcChhhEEECCC-CcEEEeccceee
Confidence                  2358999999999999874 679999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=97.29  E-value=0.002  Score=56.10  Aligned_cols=135  Identities=15%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i  114 (267)
                      +..|..|..+.+|++....    ++..+++|......... ....+|+.+++.+..-++ ++.+..+  .+.  +++||+
T Consensus        25 ~~~lg~g~~g~v~~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~   99 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKS----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV-VEMYNSYLVGDELWVVMEFL   99 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcC----CCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcch-hheeeEEEeCCEEEEEEecC
Confidence            3457778888999987542    35788888754322111 111357777777654333 3344333  222  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       +..         +. .      .. ......+..+                 +...+..+.+    
T Consensus       100 ~~~~L~~-------~~~---------~~-~------~~-~~~~~~~~~q-----------------l~~~l~~lH~----  134 (292)
T cd06657         100 EGGALTD-------IVT---------HT-R------MN-EEQIAAVCLA-----------------VLKALSVLHA----  134 (292)
T ss_pred             CCCcHHH-------HHh---------cC-C------CC-HHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            9876532       110         00 0      00 1112222211                 2222233322    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++.+ +.+.++||+.+.
T Consensus       135 ----~givH~dl~p~Nilv~~~-~~~~l~dfg~~~  164 (292)
T cd06657         135 ----QGVIHRDIKSDSILLTHD-GRVKLSDFGFCA  164 (292)
T ss_pred             ----CCeecCCCCHHHEEECCC-CCEEEcccccce
Confidence                248999999999999874 679999999763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=97.26  E-value=0.00096  Score=58.30  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .++|+|++|+||+++++ +.+.|.||+.+..
T Consensus       135 ~i~H~dl~p~nIl~~~~-~~~kL~dfg~~~~  164 (307)
T cd06607         135 ERIHRDIKAGNILLTEP-GTVKLADFGSASL  164 (307)
T ss_pred             CceecCCCcccEEECCC-CCEEEeecCccee
Confidence            47999999999999874 6899999987753

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=97.26  E-value=0.00076  Score=58.65  Aligned_cols=135  Identities=15%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~i  114 (267)
                      +..|..|..+.+|++....    .+..+++|........ .....+|+.+++.+..-++.+ .+...  .+.  +++||+
T Consensus        27 ~~~lg~g~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~-~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKH----TGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVD-MYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             hhcccCCCCeEEEEEEECC----CCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHH-HHHheecCCeEEEEEeCC
Confidence            5667778788999987532    3578888876432211 111135777776664433322 22222  122  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ...          ...      .. ......+..                 .+...++.+-+    
T Consensus       102 ~~~~L~~-------~~~----------~~~------l~-~~~~~~~~~-----------------qi~~~l~~LH~----  136 (292)
T cd06658         102 EGGALTD-------IVT----------HTR------MN-EEQIATVCL-----------------SVLRALSYLHN----  136 (292)
T ss_pred             CCCcHHH-------HHh----------cCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            8865532       110          000      01 111111211                 12222333322    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       137 ----~~ivH~dlkp~Nill~~~-~~~kL~dfg~~~  166 (292)
T cd06658         137 ----QGVIHRDIKSDSILLTSD-GRIKLSDFGFCA  166 (292)
T ss_pred             ----CCEeecCCCHHHEEEcCC-CCEEEccCcchh
Confidence                248999999999999874 689999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=97.26  E-value=0.0013  Score=57.09  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++++ +.+.++||..+.
T Consensus       135 ~i~H~dl~p~nil~~~~-~~~~l~dfg~~~  163 (311)
T cd07866         135 HILHRDIKAANILIDNQ-GILKIADFGLAR  163 (311)
T ss_pred             CeecCCCCHHHEEECCC-CCEEECcCccch
Confidence            58999999999999874 689999998775

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=97.25  E-value=0.0019  Score=55.69  Aligned_cols=137  Identities=16%  Similarity=0.082  Sum_probs=78.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      .+..+..|..+.+|++....    .+..+++|........  .....+|+.+++.+...++. +++....+.    +|+|
T Consensus         9 ~~~~lg~g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           9 KLDKLGEGSYATVYKGRSKL----TGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIV-TLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             EEEEEeecCCeEEEEEEEcC----CCcEEEEEEEecccccCCchhHHHHHHHHhhCCCccee-eEEEEEecCCeEEEEEe
Confidence            45677788888999998542    3578999986543211  11113688888888654443 344443321    8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++| .+..              .+.   ....  .   -.......+..                 .+.+.+..+.+  
T Consensus        84 ~~~~-~L~~--------------~~~---~~~~--~---~~~~~~~~~~~-----------------ql~~al~~lH~--  121 (291)
T cd07844          84 YLDT-DLKQ--------------YMD---DCGG--G---LSMHNVRLFLF-----------------QLLRGLAYCHQ--  121 (291)
T ss_pred             cCCC-CHHH--------------HHH---hCCC--C---CCHHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            8865 2211              111   1000  0   01112222221                 12223333332  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       122 ------~~i~H~dl~p~nil~~~~-~~~kl~dfg~~~  151 (291)
T cd07844         122 ------RRVLHRDLKPQNLLISER-GELKLADFGLAR  151 (291)
T ss_pred             ------CCeecccCCHHHEEEcCC-CCEEECcccccc
Confidence                  248999999999999874 689999998763

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=97.25  E-value=0.0014  Score=58.19  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       126 ~ivH~dlkp~Nill~~~-~~~kl~dfg~~~  154 (336)
T cd07849         126 NVLHRDLKPSNLLLNTN-CDLKICDFGLAR  154 (336)
T ss_pred             CeeccCCCHHHEEECCC-CCEEECccccee
Confidence            48999999999999874 679999998764

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=97.25  E-value=0.0019  Score=57.11  Aligned_cols=29  Identities=28%  Similarity=0.183  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++++||+++.+ +.+.+.||+.+.
T Consensus       139 ~i~H~dl~~~nill~~~-~~~kl~dfg~~~  167 (335)
T PTZ00024        139 YFMHRDLSPANIFINSK-GICKIADFGLAR  167 (335)
T ss_pred             CeecccccHHHeEECCC-CCEEECCcccee
Confidence            48999999999999874 678999999774

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=97.25  E-value=0.0015  Score=56.49  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.+.||+.+.
T Consensus       150 ~i~H~dlkp~Nili~~~-~~~~l~dfg~~~  178 (296)
T cd05051         150 NFVHRDLATRNCLVGKN-YTIKIADFGMSR  178 (296)
T ss_pred             CccccccchhceeecCC-CceEEcccccee
Confidence            58999999999999874 688999998765

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=97.24  E-value=0.0024  Score=54.88  Aligned_cols=138  Identities=16%  Similarity=0.106  Sum_probs=75.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      .+.+|..|..+.+|++....    .+..+++|.......  ... ...+|+++++.+..-++. +++....++    +++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~~v~   78 (284)
T cd07860           4 KVEKIGEGTYGVVYKARNKL----TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIV-KLLDVIHTENKLYLVF   78 (284)
T ss_pred             eeeeecCCCceEEEEEEECC----CCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCc-chhhhcccCCcEEEEe
Confidence            45677888889999997542    357888887653321  111 124688888887543333 333333221    778


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++| .+..              .   ++...  ... .. ......+..+                 +...++.|.  
T Consensus        79 e~~~~-~l~~--------------~---~~~~~--~~~-l~-~~~~~~~~~~-----------------i~~~l~~lh--  117 (284)
T cd07860          79 EFLHQ-DLKK--------------F---MDASP--LSG-IP-LPLIKSYLFQ-----------------LLQGLAFCH--  117 (284)
T ss_pred             ecccc-CHHH--------------H---HHhCC--CCC-CC-HHHHHHHHHH-----------------HHHHHHHHH--
Confidence            88753 2210              0   11111  000 01 1112222221                 222223332  


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ...++|+|++|+||+++++ +.+.+.||..+.
T Consensus       118 ------~~~i~H~~l~p~nill~~~-~~~~l~dfg~~~  148 (284)
T cd07860         118 ------SHRVLHRDLKPQNLLINTE-GAIKLADFGLAR  148 (284)
T ss_pred             ------HCCeecCCCCHHHEEECCC-CCEEEeeccchh
Confidence                  2248999999999999874 689999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.23  E-value=0.0015  Score=57.76  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=25.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       123 ~ivH~dlkp~NIll~~~-~~~kL~Dfg~~~  151 (338)
T cd07859         123 NVFHRDLKPKNILANAD-CKLKICDFGLAR  151 (338)
T ss_pred             CeecCCCCHHHeEECCC-CcEEEccCcccc
Confidence            49999999999999874 689999999774

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.23  E-value=0.0022  Score=54.55  Aligned_cols=136  Identities=14%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----cc-ccChHHHHHHHHHHHhCCCCceEEEEE--C-Ce--
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EV-FFNRDDEIRTFECMSSQGQGPRLLGRF--G-DG--  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~-~~--  108 (267)
                      .+.+..|..+.+|++....    .+..+.+|......     .. .....+|+++++.+...++.+ +++..  . .+  
T Consensus         7 ~~~lg~g~~g~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~-~~~~~~~~~~~~~   81 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDAD----TGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQ-YYGCLRDPEEKKL   81 (264)
T ss_pred             eeeEccCCCeEEEEEEEcC----CCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcce-EEEEEEcCCCCEE
Confidence            3455677778999997542    35788888753221     11 111246788888886555543 44332  2 12  


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +++||++|.++...       .       .+   ..   .   -.......+..+                 +...+..
T Consensus        82 ~~v~e~~~~~~L~~~-------~-------~~---~~---~---l~~~~~~~~~~~-----------------i~~al~~  121 (264)
T cd06653          82 SIFVEYMPGGSIKDQ-------L-------KA---YG---A---LTENVTRRYTRQ-----------------ILQGVSY  121 (264)
T ss_pred             EEEEEeCCCCcHHHH-------H-------HH---cC---C---CCHHHHHHHHHH-----------------HHHHHHH
Confidence             67899887765310       1       00   00   0   001112222221                 2222233


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +-        ...++|+|++|+||+++++ +.+.|.||..+.
T Consensus       122 LH--------~~~i~H~dl~p~ni~i~~~-~~~~l~dfg~~~  154 (264)
T cd06653         122 LH--------SNMIVHRDIKGANILRDSA-GNVKLGDFGASK  154 (264)
T ss_pred             HH--------hCCEecCCCCHHHEEEcCC-CCEEECcccccc
Confidence            32        2248999999999999874 679999998774

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.22  E-value=0.0049  Score=52.59  Aligned_cols=138  Identities=17%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      ..|..|.-..||+...... ......+.+|........ . ....+|..+++.+.. .-.+++++.+..+    +|+||+
T Consensus        11 ~~ig~G~fg~V~~~~~~~~-~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~   88 (266)
T cd05064          11 RILGTGRFGELCRGCLKLP-SKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDH-SNIVRLEGVITRGNTMMIVTEYM   88 (266)
T ss_pred             eeecccCCCeEEEEEEecC-CCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCC-CCcCeEEEEEecCCCcEEEEEeC
Confidence            4457777789999864321 112456777776543211 1 111356666666533 2235566654322    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..       ..       .+ +.     .. .. ...+..|..+                 +...++.+-     
T Consensus        89 ~~~~L~~-------~l-------~~-~~-----~~-l~-~~~~~~~~~~-----------------i~~al~~lH-----  124 (266)
T cd05064          89 SNGALDS-------FL-------RK-HE-----GQ-LV-AGQLMGMLPG-----------------LASGMKYLS-----  124 (266)
T ss_pred             CCCcHHH-------HH-------Hh-CC-----CC-CC-HHHHHHHHHH-----------------HHHHHHHHH-----
Confidence            9876542       11       00 00     00 01 1122222221                 222333332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                         ...++|+|++|.||+++++ +.+.+.||..+
T Consensus       125 ---~~~iiH~dikp~nili~~~-~~~~l~dfg~~  154 (266)
T cd05064         125 ---EMGYVHKGLAAHKVLVNSD-LVCKISGFRRL  154 (266)
T ss_pred             ---HCCEeeccccHhhEEEcCC-CcEEECCCccc
Confidence               2248999999999999874 67889999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=97.20  E-value=0.0014  Score=56.76  Aligned_cols=29  Identities=17%  Similarity=0.162  Sum_probs=25.0

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       126 ~i~H~dl~p~nili~~~-~~~~l~d~g~~~  154 (293)
T cd07843         126 WILHRDLKTSNLLLNNR-GILKICDFGLAR  154 (293)
T ss_pred             CeeeccCCHHHEEECCC-CcEEEeecCcee
Confidence            48999999999999974 689999997654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=97.20  E-value=0.002  Score=52.84  Aligned_cols=137  Identities=17%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i  114 (267)
                      ..+..|....+|++....    .+..+++|........  ..+..+|.+.++.+...++.+ ++....  +  .++++|+
T Consensus         5 ~~i~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        5 KKLGEGAFGKVYLARDKG----TGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVK-LYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             eEeecCCCeEEEEEEEcC----CCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhh-heeeeecCCceEEEEecc
Confidence            556677788999998643    2578999988654321  112246777777775444433 333322  2  2788998


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..              .+.....   .    .+ ......+..                 .+...+..+..    
T Consensus        80 ~~~~L~~--------------~~~~~~~---~----~~-~~~~~~~~~-----------------~l~~~l~~lh~----  116 (225)
T smart00221       80 EGGDLFD--------------YLRKKGG---K----LS-EEEARFYLR-----------------QILEALEYLHS----  116 (225)
T ss_pred             CCCCHHH--------------HHHhccc---C----CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8764431              0111000   0    00 011111111                 11112222221    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                          ..++|+|+++.||+++++ +.+.++||+.+..
T Consensus       117 ----~~i~h~di~~~ni~v~~~-~~~~l~d~g~~~~  147 (225)
T smart00221      117 ----LGIVHRDLKPENILLGMD-GLVKLADFGLARF  147 (225)
T ss_pred             ----CCeecCCCCHHHEEEcCC-CCEEEeeCceeeE
Confidence                279999999999999974 7899999997764

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.19  E-value=0.0018  Score=52.23  Aligned_cols=74  Identities=22%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCC
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLS  120 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~  120 (267)
                      ..+..|.+..+|.+.+.      +..+++|+-..++. .-+-+.|+++++.++..|.+|++|..+.+...|+|++|+++.
T Consensus        28 ~~L~KG~~s~Vyl~~~~------~~~~a~Kvrr~ds~-r~~l~kEakiLeil~g~~~~p~vy~yg~~~i~me~i~G~~L~  100 (201)
T COG2112          28 KELAKGTTSVVYLGEWR------GGEVALKVRRRDSP-RRNLEKEAKILEILAGEGVTPEVYFYGEDFIRMEYIDGRPLG  100 (201)
T ss_pred             hhhhcccccEEEEeecc------CceEEEEEecCCcc-hhhHHHHHHHHHHhhhcCCCceEEEechhhhhhhhhcCcchh
Confidence            34578889999999864      36788888765542 223368999999999999999999999887779999999887


Q ss_pred             c
Q 024452          121 A  121 (267)
Q Consensus       121 ~  121 (267)
                      .
T Consensus       101 ~  101 (201)
T COG2112         101 K  101 (201)
T ss_pred             h
Confidence            5

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.19  E-value=0.0012  Score=56.83  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=75.8

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      ..|..|..+.+|++....    .+..+.+|+...... .. ..-.+|+++++.+...++. +.++...  +.  +++||+
T Consensus        11 ~~ig~g~~g~v~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~lv~e~~   85 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIP----TGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIV-SFYGAFLNENNICMCMEFM   85 (284)
T ss_pred             HHcCCCCCeEEEEEEEcC----CCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcc-eEeeeEecCCEEEEEEecC
Confidence            456777789999987542    356788887643321 11 1113677888777544443 3444332  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..       ..       .+   .. +.     .......+..                 .+...+..+-+    
T Consensus        86 ~~~~L~~-------~~-------~~---~~-~~-----~~~~~~~~~~-----------------~i~~~l~~LH~----  121 (284)
T cd06620          86 DCGSLDR-------IY-------KK---GG-PI-----PVEILGKIAV-----------------AVVEGLTYLYN----  121 (284)
T ss_pred             CCCCHHH-------HH-------Hh---cc-CC-----CHHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            9875532       11       00   00 00     0111111111                 11222233321    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||+++++ +.+.|+||..+.
T Consensus       122 ---~~~i~H~dl~p~nil~~~~-~~~~l~d~gl~~  152 (284)
T cd06620         122 ---VHRIMHRDIKPSNILVNSR-GQIKLCDFGVSG  152 (284)
T ss_pred             ---hcCeeccCCCHHHEEECCC-CcEEEccCCccc
Confidence               1248999999999999874 689999998664

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=97.19  E-value=0.0087  Score=52.36  Aligned_cols=72  Identities=11%  Similarity=0.057  Sum_probs=42.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE--C-Ce---eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF--G-DG---RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~-~~---~v~e~i  114 (267)
                      ..|..|....||++.....  ..+..+.+|...... ......+|+.+++.+..-++.. ++..+  . +.   ++++|.
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~--~~~~~~aiK~~~~~~-~~~~~~~E~~~l~~l~h~niv~-~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDG--KDDRDYALKQIEGTG-ISMSACREIALLRELKHPNVIS-LQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             cccccCCCeEEEEEEEccC--CCCceEEEEEECCCC-CcHHHHHHHHHHHhcCCCCCcc-eeeeEecCCCcEEEEEEecc
Confidence            3577788889999975321  134678888764322 1112247899998886655443 23322  1 21   677887


Q ss_pred             cC
Q 024452          115 HA  116 (267)
Q Consensus       115 ~G  116 (267)
                      +|
T Consensus        83 ~~   84 (317)
T cd07868          83 EH   84 (317)
T ss_pred             CC
Confidence            65

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=0.003  Score=56.80  Aligned_cols=137  Identities=18%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----c----cccChHHHHHHHHHHHhCCCCceEE---EEEC
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----E----VFFNRDDEIRTFECMSSQGQGPRLL---GRFG  106 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~----~~~dr~~E~~~~~~l~~~gl~P~v~---~~~~  106 (267)
                      +....+..|....|=...-..    .++.|.+||.++..    +    ...+..+|+++|+.|+.    |.++   ..+.
T Consensus       175 ii~~~LGsGafg~Vkla~e~~----tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~H----P~IV~~~d~f~  246 (475)
T KOG0615|consen  175 IISKTLGSGAFGLVKLAYEKK----TGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSH----PNIVRIKDFFE  246 (475)
T ss_pred             EeeeeecCCceeEEEEEEEcc----cCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCC----CCEEEEeeeee
Confidence            344555666666665554222    46899999886531    1    12333689999999876    4433   3332


Q ss_pred             --C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHH
Q 024452          107 --D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLK  182 (267)
Q Consensus       107 --~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  182 (267)
                        +  .+|+||++|..+-.--..+               .         .+.+..-+.                -+..|.
T Consensus       247 ~~ds~YmVlE~v~GGeLfd~vv~n---------------k---------~l~ed~~K~----------------~f~Qll  286 (475)
T KOG0615|consen  247 VPDSSYMVLEYVEGGELFDKVVAN---------------K---------YLREDLGKL----------------LFKQLL  286 (475)
T ss_pred             cCCceEEEEEEecCccHHHHHHhc---------------c---------ccccchhHH----------------HHHHHH
Confidence              2  3999999986553211000               0         000000000                012333


Q ss_pred             HHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeecccCc
Q 024452          183 DEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFLQ  230 (267)
Q Consensus       183 ~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~~  230 (267)
                      ..+.+|        +..++||+|++|.|||+..+..  .+.|-||..|..
T Consensus       287 ~avkYL--------H~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  287 TAVKYL--------HSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             HHHHHH--------HHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            344444        3456999999999999986422  367999998864

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=97.18  E-value=0.002  Score=54.11  Aligned_cols=140  Identities=15%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      ...+..|....+|++....    ++..+++|......  .... ....|..+++.+...++. +++....  +.  ++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLS----DNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNII-SYKEAFLDGNKLCIVME   79 (256)
T ss_pred             eeeecCCCceeEEEEEECC----CCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCch-hhhhhhccCCEEEEEeh
Confidence            4556777778999987542    35788898865321  1111 112566666666533333 2333222  22  7889


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ....   ..       .+.. .. ....+..+..                 .+...+..+.   
T Consensus        80 ~~~~~~L~~-------~~~~---~~-------~~~~-~~-~~~~~~~~~~-----------------~l~~al~~lh---  120 (256)
T cd08530          80 YAPFGDLSK-------AISK---RK-------KKRK-LI-PEQEIWRIFI-----------------QLLRGLQALH---  120 (256)
T ss_pred             hcCCCCHHH-------HHHH---HH-------hhcC-CC-CHHHHHHHHH-----------------HHHHHHHHHh---
Confidence            888865532       1111   00       0000 00 0111111111                 1222222332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|+++.||++++ ++.+.++||..+.
T Consensus       121 -----~~~i~h~~l~~~ni~~~~-~~~~kl~d~g~~~  151 (256)
T cd08530         121 -----EQKILHRDLKSANILLVA-NDLVKIGDLGISK  151 (256)
T ss_pred             -----hCCcccCCCCcceEEEec-CCcEEEeeccchh
Confidence                 234899999999999997 4679999997664

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=97.18  E-value=0.0041  Score=53.32  Aligned_cols=139  Identities=18%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      .+..+..|..+.+|++....    ++..+++|........ ... ..+|+.+++.+...+ .++++..+.+  .  ++++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           4 QLEKLGEGTYATVYKGRNRT----TGEIVALKEIHLDAEEGTPSTAIREISLMKELKHEN-IVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             EeeeeccCCceEEEEEEECC----CCeEEEEEEecccccccchHHHHHHHHHHHhhcCCC-EeeeeeeEeeCCcEEEEEe
Confidence            45667788888999998543    3578888876433211 111 136888888885433 3445554432  2  7889


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++| .+..       .       +.. +....     .-.......+..+                 +...+..|.   
T Consensus        79 ~~~~-~l~~-------~-------~~~-~~~~~-----~~~~~~~~~~~~q-----------------i~~~l~~lH---  117 (284)
T cd07836          79 YMDK-DLKK-------Y-------MDT-HGVRG-----ALDPNTVKSFTYQ-----------------LLKGIAFCH---  117 (284)
T ss_pred             cCCc-cHHH-------H-------HHh-cCCCC-----CcCHHHHHHHHHH-----------------HHHHHHHHH---
Confidence            8875 2110       0       000 11000     0001112222211                 122223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++++ +.+.+.||..+.
T Consensus       118 -----~~~i~h~dl~p~ni~~~~~-~~~~l~d~g~~~  148 (284)
T cd07836         118 -----ENRVLHRDLKPQNLLINKR-GELKLADFGLAR  148 (284)
T ss_pred             -----HCCeeeCCCCHHHEEECCC-CcEEEeecchhh
Confidence                 1248999999999999874 689999998764

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=97.17  E-value=0.0054  Score=52.62  Aligned_cols=142  Identities=16%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC-C--eeEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG-D--GRVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~--~~v~e~  113 (267)
                      ....|..|..+.+|++............+.+|........  ...-.+|+..++.+...++.+ +++... .  .++++|
T Consensus        11 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~v~e~   89 (279)
T cd05057          11 KIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVR-LLGICLSSQVQLITQL   89 (279)
T ss_pred             EcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcce-EEEEEecCceEEEEec
Confidence            3456777878999998754311111235778876544221  111236777777775444433 343332 2  278898


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++...                 ++....+    .. ...+..|..+                 +...+..|.+   
T Consensus        90 ~~~g~L~~~-----------------l~~~~~~----~~-~~~~~~~~~q-----------------i~~~l~~LH~---  127 (279)
T cd05057          90 MPLGCLLDY-----------------VRNHKDN----IG-SQYLLNWCVQ-----------------IAKGMSYLEE---  127 (279)
T ss_pred             CCCCcHHHH-----------------HHhccCC----CC-HHHHHHHHHH-----------------HHHHHHHHHh---
Confidence            887655321                 1111000    00 1112222221                 2222333322   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       128 -----~~i~H~di~p~nil~~~~-~~~kL~dfg~~~  157 (279)
T cd05057         128 -----KRLVHRDLAARNVLVKTP-QHVKITDFGLAK  157 (279)
T ss_pred             -----CCEEecccCcceEEEcCC-CeEEECCCcccc
Confidence                 458999999999999864 679999999775

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=97.17  E-value=0.015  Score=50.18  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -...|..|..+.+|++...+. .+..+..+.+|........  ...-.+|..+++.+... -.+++++...++    +++
T Consensus        10 i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~-~i~~~~~~~~~~~~~~lv~   88 (288)
T cd05061          10 LLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVVRLLGVVSKGQPTLVVM   88 (288)
T ss_pred             eeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCC-CeeeEEEEEcCCCCcEEEE
Confidence            356678888899999864321 1112457888876433211  11112455666655432 234555554322    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCC-chhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ||++|.++..       ...       +........... ......+..+..                 .+...+..+- 
T Consensus        89 e~~~~g~L~~-------~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~l~~lH-  136 (288)
T cd05061          89 ELMAHGDLKS-------YLR-------SLRPEAENNPGRPPPTLQEMIQMAA-----------------EIADGMAYLN-  136 (288)
T ss_pred             eCCCCCCHHH-------HHH-------HhccccccCCCCCCCCHHHHHHHHH-----------------HHHHHHHHHH-
Confidence            9998876642       111       111100000000 011111221211                 1222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||+++++ +.+.++||..+.
T Consensus       137 -------~~~i~H~dikp~nili~~~-~~~~L~Dfg~~~  167 (288)
T cd05061         137 -------AKKFVHRDLAARNCMVAHD-FTVKIGDFGMTR  167 (288)
T ss_pred             -------hCCCcCCCCChheEEEcCC-CcEEECcCCccc
Confidence                   2358999999999999974 689999998764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.16  E-value=0.0018  Score=60.18  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCC---CcccccChHHHHHHHHHHHhCCCC--ceEEEE-ECCeeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGE---GVEVFFNRDDEIRTFECMSSQGQG--PRLLGR-FGDGRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~---~~~~~~dr~~E~~~~~~l~~~gl~--P~v~~~-~~~~~v~e  112 (267)
                      .+..|..|.+..||...-..    .+..+.+|...-   ..+.++  -+|+.+|+-+....++  =+-|.. ++-|.|||
T Consensus       277 ~~~kigqgaSG~vy~A~~~~----~~~~VaiK~m~l~~Q~~keLi--lnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  277 DFKKIGQGATGGVYVARKIS----TKQEVAIKRMDLRKQPKKELL--LNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             chhhhccccccceeeeeecc----CCceEEEEEEEeccCCchhhh--HHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            57778899999999886432    234444443321   122222  2688887665543321  011111 23469999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..++.-       ...               . ..+ ..+++       ..|.          ...+.+..|    
T Consensus       351 ym~ggsLTDv-------Vt~---------------~-~~~-E~qIA-------~Icr----------e~l~aL~fL----  385 (550)
T KOG0578|consen  351 YMEGGSLTDV-------VTK---------------T-RMT-EGQIA-------AICR----------EILQGLKFL----  385 (550)
T ss_pred             ecCCCchhhh-------hhc---------------c-ccc-HHHHH-------HHHH----------HHHHHHHHH----
Confidence            9999887631       100               0 000 01111       1110          111222333    


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                          +...++|.|++.+|||...+ +.+.|.||.||+.-
T Consensus       386 ----H~~gIiHrDIKSDnILL~~~-g~vKltDFGFcaqi  419 (550)
T KOG0578|consen  386 ----HARGIIHRDIKSDNILLTMD-GSVKLTDFGFCAQI  419 (550)
T ss_pred             ----HhcceeeeccccceeEeccC-CcEEEeeeeeeecc
Confidence                33569999999999999874 78999999999753

>PHA03207 serine/threonine kinase US3; Provisional

Probab=97.16  E-value=0.0038  Score=56.80  Aligned_cols=133  Identities=15%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      -+..|..|....||++.....  ..+..+++|......    ...+|+.+++.+...++.+ ++..+.  +.  +++++.
T Consensus        96 i~~~Lg~G~~g~Vy~~~~~~~--~~~~~v~vK~~~~~~----~~~~E~~il~~l~h~~iv~-~~~~~~~~~~~~lv~e~~  168 (392)
T PHA03207         96 ILSSLTPGSEGEVFVCTKHGD--EQRKKVIVKAVTGGK----TPGREIDILKTISHRAIIN-LIHAYRWKSTVCMVMPKY  168 (392)
T ss_pred             EEEeecCCCCeEEEEEEEcCC--ccceeEEEEeccccc----cHHHHHHHHHhcCCCCccc-eeeeEeeCCEEEEEehhc
Confidence            456678888899999864321  134678888764332    1247999998886544443 443332  21  566665


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      .|..           .    ..+.+-       .. .. ......+..                 .+...+..|-     
T Consensus       169 ~~~l-----------~----~~l~~~-------~~-l~-~~~~~~i~~-----------------ql~~aL~~LH-----  202 (392)
T PHA03207        169 KCDL-----------F----TYVDRS-------GP-LP-LEQAITIQR-----------------RLLEALAYLH-----  202 (392)
T ss_pred             CCCH-----------H----HHHHhc-------CC-CC-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            4310           1    111100       00 01 111222221                 1222233332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                         ...++|+|++|.|||++.+ +.+.|+||..|
T Consensus       203 ---~~givHrDlkp~Nill~~~-~~~~l~DfG~a  232 (392)
T PHA03207        203 ---GRGIIHRDVKTENIFLDEP-ENAVLGDFGAA  232 (392)
T ss_pred             ---HCCccccCCCHHHEEEcCC-CCEEEccCccc
Confidence               2358999999999999874 68999999876

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=97.15  E-value=0.0024  Score=54.59  Aligned_cols=29  Identities=17%  Similarity=0.156  Sum_probs=24.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.++||..+.
T Consensus       119 ~i~H~dikp~nil~~~~-~~~~l~Dfg~~~  147 (268)
T cd05086         119 NFLHSDLALRNCFLTSD-LTVKVGDYGIGP  147 (268)
T ss_pred             CeeccCCccceEEEcCC-ccEEeccccccc
Confidence            38999999999999874 679999998753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=97.15  E-value=0.0047  Score=54.26  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=27.9

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +...++|+|++|.|||+++ .+.+.|+||.-|.
T Consensus       137 H~~~IlHRDLKPQNlLi~~-~G~lKlaDFGlAr  168 (323)
T KOG0594|consen  137 HSHGILHRDLKPQNLLISS-SGVLKLADFGLAR  168 (323)
T ss_pred             HhCCeecccCCcceEEECC-CCcEeeeccchHH
Confidence            3456999999999999998 5789999999886

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=97.15  E-value=0.0025  Score=54.66  Aligned_cols=137  Identities=17%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      ...+..|....+|++....    ++..+++|+.....  ... ....+|..+++.+....+ ++++....+  .  ++++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i-v~~~~~~~~~~~~~iv~e   78 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKL----TGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI-VRLLDVVHSENKLYLVFE   78 (283)
T ss_pred             heEecCCCCeEEEEEEEcC----CCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCc-cCHhheeccCCeEEEEEe
Confidence            3456778788999997543    35788898775332  111 111367887777764333 334444332  2  7788


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |+++ ++..              .+   +....  . ... ......+..                 .+.+.++.|.+  
T Consensus        79 ~~~~-~l~~--------------~~---~~~~~--~-~~~-~~~~~~~~~-----------------~i~~~L~~lH~--  117 (283)
T cd07835          79 FLDL-DLKK--------------YM---DSSPL--T-GLD-PPLIKSYLY-----------------QLLQGIAYCHS--  117 (283)
T ss_pred             ccCc-CHHH--------------HH---hhCCC--C-CCC-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            8753 2211              00   01000  0 000 111111211                 12222233321  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|+||++++ ++.+.|+||..+.
T Consensus       118 ------~~~~H~dl~p~nil~~~-~~~~~l~df~~~~  147 (283)
T cd07835         118 ------HRVLHRDLKPQNLLIDR-EGALKLADFGLAR  147 (283)
T ss_pred             ------CCeeCCCCCHHHEEEcC-CCcEEEeeccccc
Confidence                  35899999999999987 4789999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=97.14  E-value=0.0032  Score=55.75  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      ...|..|....+|.+.......   .....+.+|+.......  .-...+|.++++.+.++.-..++++.+.. +   ++
T Consensus        17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv   96 (334)
T cd05100          17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVL   96 (334)
T ss_pred             cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEE
Confidence            5567777788999996421100   01236788876543211  11124688888888655444455555432 2   78


Q ss_pred             EEeecCCCC
Q 024452          111 EEFIHARTL  119 (267)
Q Consensus       111 ~e~i~G~~l  119 (267)
                      ++|++|.++
T Consensus        97 ~e~~~~g~L  105 (334)
T cd05100          97 VEYASKGNL  105 (334)
T ss_pred             EecCCCCcH
Confidence            999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=97.14  E-value=0.0023  Score=57.01  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=45.7

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEE--CCe---eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRF--GDG---RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~---~v~  111 (267)
                      ...|..|-.+.||++...... ...+..+.+|+...... . ......|+.++..+..+.-..++++.+  .+.   .++
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~   91 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIV   91 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEE
Confidence            355677778899998532111 11246788988753221 1 111135778887775443223344433  222   679


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|++|.++.
T Consensus        92 ey~~~~~L~  100 (337)
T cd05054          92 EYCKFGNLS  100 (337)
T ss_pred             ecCCCCCHH
Confidence            999987664

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=97.12  E-value=0.0032  Score=53.09  Aligned_cols=138  Identities=9%  Similarity=0.079  Sum_probs=77.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      +..+..|..+.+|.+....    ++..+++|.....   .....+..+|+.+++.+..-++ ++++..+.+.    ++++
T Consensus         5 ~~~lg~g~~g~~~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKE----DGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNI-VQYQESFEENGNLYIVMD   79 (256)
T ss_pred             EEEeccCCceEEEEEEEcC----CCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCe-eeeEeeecCCCeEEEEEe
Confidence            5567777788999987543    3578888876421   1111122467777777754443 3455544322    7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ...          ....  ..  ........|..+                 +...+..+-   
T Consensus        80 ~~~~~~l~~-------~~~----------~~~~--~~--~~~~~~~~~~~~-----------------l~~~l~~lh---  118 (256)
T cd08218          80 YCEGGDLYK-------KIN----------AQRG--VL--FPEDQILDWFVQ-----------------ICLALKHVH---  118 (256)
T ss_pred             cCCCCcHHH-------HHH----------hccC--CC--CCHHHHHHHHHH-----------------HHHHHHHHH---
Confidence            998865421       010          0000  00  011122223221                 122222332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||+++++ +.+.++||+.+.
T Consensus       119 -----~~~i~h~~l~~~nil~~~~-~~~~l~d~~~~~  149 (256)
T cd08218         119 -----DRKILHRDIKSQNIFLTKD-GTIKLGDFGIAR  149 (256)
T ss_pred             -----hCCEecCCCCHHHEEEcCC-CCEEEeecccee
Confidence                 2358999999999999874 679999998775

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=97.12  E-value=0.0019  Score=56.51  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.+.||+.+.
T Consensus       135 ~i~H~dl~p~nil~~~~-~~~kl~dfg~~~  163 (308)
T cd06634         135 NMIHRDVKAGNILLSEP-GLVKLGDFGSAS  163 (308)
T ss_pred             CcccCCCCHHhEEECCC-CcEEECCcccce
Confidence            48999999999999874 679999998765

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=97.11  E-value=0.0012  Score=54.56  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             eeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEeecCCCCCcc
Q 024452           49 NEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFIHARTLSAA  122 (267)
Q Consensus        49 N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i~G~~l~~~  122 (267)
                      ..+|++....    ++..+++|+.......  ..+...|.+.++.+...++.+ +++...  .  .++++|++|.++.. 
T Consensus         3 g~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~-~~~~~~~~~~~~l~~e~~~~~~L~~-   76 (244)
T smart00220        3 GKVYLARDKK----TGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVR-LYDVFEDEDKLYLVMEYCDGGDLFD-   76 (244)
T ss_pred             eEEEEEEECC----CCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHH-HHhheeeCCEEEEEEeCCCCCCHHH-
Confidence            4788887542    3578999998654321  112246777777774444433 333221  2  27899988865532 


Q ss_pred             cCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEE
Q 024452          123 DIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFC  202 (267)
Q Consensus       123 ~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~  202 (267)
                            .       +...+.        .+ ...+..+..                 .+...+..+.+        ..++
T Consensus        77 ------~-------~~~~~~--------~~-~~~~~~~~~-----------------~l~~~l~~lh~--------~~i~  109 (244)
T smart00220       77 ------L-------LKKRGR--------LS-EDEARFYAR-----------------QILSALEYLHS--------NGII  109 (244)
T ss_pred             ------H-------HHhccC--------CC-HHHHHHHHH-----------------HHHHHHHHHHH--------cCee
Confidence                  0       111000        01 111222221                 11222233322        2689


Q ss_pred             ccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          203 HNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       203 H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      |+|+.++||+++++ +.+.++||+.+..
T Consensus       110 h~~i~~~ni~~~~~-~~~~l~d~~~~~~  136 (244)
T smart00220      110 HRDLKPENILLDED-GHVKLADFGLARQ  136 (244)
T ss_pred             cCCcCHHHeEECCC-CcEEEccccceee
Confidence            99999999999974 6899999998764

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=97.10  E-value=0.0044  Score=53.11  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++++||+++++ +.+.|+||..+.
T Consensus       127 ~i~h~~l~~~nili~~~-~~~~l~dfg~~~  155 (287)
T cd07838         127 RIVHRDLKPQNILVTSD-GQVKIADFGLAR  155 (287)
T ss_pred             CeeeccCChhhEEEccC-CCEEEeccCcce
Confidence            48999999999999975 789999998763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=97.09  E-value=0.019  Score=50.16  Aligned_cols=72  Identities=10%  Similarity=0.016  Sum_probs=42.2

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE--C-Ce---eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF--G-DG---RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~-~~---~v~e~i  114 (267)
                      ..|..|..+.||++.....  ..+..+.+|....... .....+|+++++.+...++.+ ++..+  . +.   ++++|.
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~--~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l~h~niv~-~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDG--KDEKEYALKQIEGTGI-SMSACREIALLRELKHPNVIA-LQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             eEeccCCCeeEEEEEecCC--CccceEEEEEecCCCC-cHHHHHHHHHHHhCCCCCeee-EEEEEeccCCCeEEEEEeee
Confidence            4577788899999985321  1346788887543221 112247888888876544433 22322  1 22   778887


Q ss_pred             cC
Q 024452          115 HA  116 (267)
Q Consensus       115 ~G  116 (267)
                      +|
T Consensus        83 ~~   84 (317)
T cd07867          83 EH   84 (317)
T ss_pred             CC
Confidence            75

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=97.09  E-value=0.0028  Score=55.38  Aligned_cols=29  Identities=14%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++.+ +.+.+.||+.+.
T Consensus       121 ~ivH~dlk~~Nili~~~-~~~kl~d~~~~~  149 (314)
T cd08216         121 GFIHRSVKASHILLSGD-GKVVLSGLRYSV  149 (314)
T ss_pred             CeecCCCCcceEEEecC-CceEEecCccce
Confidence            48999999999999974 678999998663

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PHA02988 hypothetical protein; Provisional

Probab=97.08  E-value=0.0035  Score=54.25  Aligned_cols=73  Identities=18%  Similarity=0.334  Sum_probs=46.1

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEECC--------e
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--------G  108 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--------~  108 (267)
                      ..+..|-...+|+....      +..+++|.......   ..+. -.+|+.+++.+...++. ++++.+.+        .
T Consensus        26 ~~i~~g~~~~v~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv-~~~g~~~~~~~~~~~~~   98 (283)
T PHA02988         26 VLIKENDQNSIYKGIFN------NKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNIL-KIYGFIIDIVDDLPRLS   98 (283)
T ss_pred             eEEeeCCceEEEEEEEC------CEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEE-EEeeeEEecccCCCceE
Confidence            44567778899999863      47899998754321   1121 24788888888665443 34443211        1


Q ss_pred             eEEEeecCCCCC
Q 024452          109 RVEEFIHARTLS  120 (267)
Q Consensus       109 ~v~e~i~G~~l~  120 (267)
                      +++||++|..+.
T Consensus        99 lv~Ey~~~g~L~  110 (283)
T PHA02988         99 LILEYCTRGYLR  110 (283)
T ss_pred             EEEEeCCCCcHH
Confidence            789999987654

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=97.07  E-value=0.0025  Score=55.34  Aligned_cols=137  Identities=14%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEE--CC--eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRF--GD--GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~--~~--~~v~e  112 (267)
                      ..+..+..|..+.+|++....    .+..+++|..........+ ...|..+++.+..-++ +++++.+  .+  .+|++
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i-~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          22 TRFEKIGQGASGTVYTAIDVA----TGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNI-VNYLDSYLVGDELWVVME   96 (293)
T ss_pred             eeeeEecCCCCeEEEEEEEcC----CCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCe-eehhheeeeCCcEEEEEe
Confidence            345667777788999996432    2467888876432211111 1356666665543332 2233322  22  28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++...       ..       +   ..      .. ...+..+..                 .+...+..+.   
T Consensus        97 ~~~~~~L~~~-------~~-------~---~~------l~-~~~~~~i~~-----------------~l~~al~~LH---  132 (293)
T cd06647          97 YLAGGSLTDV-------VT-------E---TC------MD-EGQIAAVCR-----------------ECLQALEFLH---  132 (293)
T ss_pred             cCCCCcHHHH-------Hh-------h---cC------CC-HHHHHHHHH-----------------HHHHHHHHHH---
Confidence            9988665320       10       0   00      00 011111111                 1222223332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|+||+++.+ +.+.|+||..+.
T Consensus       133 -----~~gi~H~dL~p~Nili~~~-~~~kL~dfg~~~  163 (293)
T cd06647         133 -----SNQVIHRDIKSDNILLGMD-GSVKLTDFGFCA  163 (293)
T ss_pred             -----hCCEeeccCCHHHEEEcCC-CCEEEccCccee
Confidence                 2248999999999999874 679999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=97.07  E-value=0.0038  Score=54.45  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=25.7

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       128 ~~ivH~dikp~Nill~~~-~~~kL~Dfg~~~  157 (303)
T cd05110         128 RRLVHRDLAARNVLVKSP-NHVKITDFGLAR  157 (303)
T ss_pred             cCeeccccccceeeecCC-CceEEccccccc
Confidence            358999999999999864 679999998775

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=97.06  E-value=0.0017  Score=55.71  Aligned_cols=136  Identities=13%  Similarity=0.080  Sum_probs=73.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e  112 (267)
                      +..+..|..+.+|++....    .+..+++|......  ... ....+|+++++.+...++. +++....  +  .++++
T Consensus         5 ~~~l~~g~~~~vy~~~~~~----~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~-~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRE----THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIV-RLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             EEEecccCCeEEEEEEECC----CCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCee-eHHHHhccCCceEEEEe
Confidence            4567777788999998643    35678888764321  111 1224688888877543332 2222222  1  17788


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |.+|. +.       +.          ++....+    . .......+..                 .+.+.+..|..  
T Consensus        80 ~~~~~-l~-------~~----------~~~~~~~----~-~~~~~~~~~~-----------------qi~~al~~LH~--  117 (284)
T cd07839          80 YCDQD-LK-------KY----------FDSCNGD----I-DPEIVKSFMF-----------------QLLKGLAFCHS--  117 (284)
T ss_pred             cCCCC-HH-------HH----------HHhcCCC----C-CHHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            87641 11       00          1111000    0 0111222221                 12223333322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|+||+++.+ +.+.|+||+.+.
T Consensus       118 ------~~i~H~dl~~~nil~~~~-~~~~l~dfg~~~  147 (284)
T cd07839         118 ------HNVLHRDLKPQNLLINKN-GELKLADFGLAR  147 (284)
T ss_pred             ------CCEecCCCCHHHEEEcCC-CcEEECccchhh
Confidence                  248999999999999874 689999998664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=97.04  E-value=0.0014  Score=55.69  Aligned_cols=77  Identities=17%  Similarity=0.068  Sum_probs=42.3

Q ss_pred             ecCceeeeeEEEEeCCCC--CCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKN--NGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~--~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i  114 (267)
                      +..|-...+|+++.....  +.++..+.+|....+.  .....-.+|+.+++.+..-++.+ +++.+.  +  .++++|+
T Consensus         3 lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           3 LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVK-LLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             cccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeee-EeeeecCCCCeEEEEecc
Confidence            556667889998754211  1123567788765432  11111235777777665444433 444432  2  2889999


Q ss_pred             cCCCCC
Q 024452          115 HARTLS  120 (267)
Q Consensus       115 ~G~~l~  120 (267)
                      +|.++.
T Consensus        82 ~~~~L~   87 (269)
T cd05044          82 EGGDLL   87 (269)
T ss_pred             CCCcHH
Confidence            986553

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=97.04  E-value=0.0055  Score=54.27  Aligned_cols=135  Identities=14%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEE-C-C-e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRF-G-D-G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~-~-~--~v  110 (267)
                      .+..|..|..+.+|++....    .+..+.+|......   ........|.++++.+..-++.+ ++..+ . . .  ++
T Consensus        14 ~~~~ig~g~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~-~~~~~~~~~~~~~lv   88 (328)
T cd07856          14 DLQPVGMGAFGLVCSARDQL----TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIIS-LSDIFISPLEDIYFV   88 (328)
T ss_pred             EEEeecccCCeEEEEEEECC----CCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeee-EeeeEecCCCcEEEE
Confidence            46677888889999997442    35788888654321   11111236888888776545444 33332 2 2 1  67


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|..| .+.              ..+.   ....     +.  .....+..                 .+.+.+..+- 
T Consensus        89 ~e~~~~-~L~--------------~~~~---~~~~-----~~--~~~~~~~~-----------------ql~~aL~~LH-  125 (328)
T cd07856          89 TELLGT-DLH--------------RLLT---SRPL-----EK--QFIQYFLY-----------------QILRGLKYVH-  125 (328)
T ss_pred             eehhcc-CHH--------------HHHh---cCCC-----CH--HHHHHHHH-----------------HHHHHHHHHH-
Confidence            777632 111              1111   1000     00  11111111                 1222223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ...++|+|++|.||++++ .+.+.++||+.+.
T Consensus       126 -------~~~iiH~dl~p~Nili~~-~~~~~l~dfg~~~  156 (328)
T cd07856         126 -------SAGVVHRDLKPSNILINE-NCDLKICDFGLAR  156 (328)
T ss_pred             -------hCCcccCCCCHHHEeECC-CCCEEeCcccccc
Confidence                   124899999999999987 4679999998764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=97.02  E-value=0.0027  Score=56.44  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       138 ~ivHrdikp~Nil~~~~-~~~kl~Dfg~~~  166 (343)
T cd07878         138 GIIHRDLKPSNVAVNED-CELRILDFGLAR  166 (343)
T ss_pred             CeecccCChhhEEECCC-CCEEEcCCccce
Confidence            58999999999999874 689999998764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=97.02  E-value=0.0071  Score=51.38  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=25.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       133 ~i~H~dlkp~Nil~~~~-~~~kl~dfg~~~  161 (273)
T cd05035         133 NFIHRDLAARNCMLRED-MTVCVADFGLSK  161 (273)
T ss_pred             CeeccccchheEEECCC-CeEEECCcccee
Confidence            48999999999999874 679999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=97.02  E-value=0.0049  Score=55.06  Aligned_cols=134  Identities=17%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEEC---------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFG---------  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~---------  106 (267)
                      .+..|..|..+.+|++....    .+..+++|......   .......+|+.+++.+..-++.+ ++..+.         
T Consensus        20 ~~~~lg~g~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~~~~   94 (353)
T cd07850          20 NLKPIGSGAQGIVCAAYDTV----TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIG-LLNVFTPQKSLEEFQ   94 (353)
T ss_pred             EEEEeccCCCEEEEEEEECC----CCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcc-eeeeeccCCCccccC
Confidence            46778888889999997543    35789999864321   11111135777777775544433 333321         


Q ss_pred             C-eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          107 D-GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       107 ~-~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                      . .+|++|++|. +.          ..+       +.. .      + ...+..+..                 .+...+
T Consensus        95 ~~~lv~e~~~~~-l~----------~~~-------~~~-l------~-~~~~~~~~~-----------------ql~~aL  131 (353)
T cd07850          95 DVYLVMELMDAN-LC----------QVI-------QMD-L------D-HERMSYLLY-----------------QMLCGI  131 (353)
T ss_pred             cEEEEEeccCCC-HH----------HHH-------hhc-C------C-HHHHHHHHH-----------------HHHHHH
Confidence            1 2778888651 11          000       000 0      0 001111111                 122222


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.|-.        ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       132 ~~LH~--------~gi~H~dlkp~Nil~~~~-~~~kL~Dfg~~~  166 (353)
T cd07850         132 KHLHS--------AGIIHRDLKPSNIVVKSD-CTLKILDFGLAR  166 (353)
T ss_pred             HHHHh--------CCeeeCCCCHHHEEECCC-CCEEEccCccce
Confidence            33322        258999999999999874 689999998775

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=97.01  E-value=0.0024  Score=55.66  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=73.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      +..|..|..+.+|++....    .+..+++|.......... ...+|+.+++.+..-++ +++++.+.  +.  ++++|+
T Consensus        26 ~~~ig~g~~g~v~~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i-~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKH----SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNV-VEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hhhcCCCCceeEEEEEEcC----CCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCch-hhhhhheeeCCeEEEEEecC
Confidence            4456777788999987532    357888888643221111 11356666655543232 33443332  22  789999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       +.       .   ...      .. ...+..+..+                 +...+..+.     
T Consensus       101 ~~~~L~~-------~~-------~---~~~------~~-~~~~~~~~~q-----------------i~~~L~~LH-----  134 (297)
T cd06659         101 QGGALTD-------IV-------S---QTR------LN-EEQIATVCES-----------------VLQALCYLH-----  134 (297)
T ss_pred             CCCCHHH-------HH-------h---hcC------CC-HHHHHHHHHH-----------------HHHHHHHHH-----
Confidence            8755431       10       0   000      00 1112222211                 122223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       135 ---~~~ivH~dl~p~Nill~~~-~~~kL~dfg~~~  165 (297)
T cd06659         135 ---SQGVIHRDIKSDSILLTLD-GRVKLSDFGFCA  165 (297)
T ss_pred             ---hCCeecCCCCHHHeEEccC-CcEEEeechhHh
Confidence               2348999999999999874 689999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=97.00  E-value=0.0029  Score=53.53  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       118 ~i~H~dlk~~nili~~~-~~~kl~dfg~~~  146 (262)
T cd05058         118 KFVHRDLAARNCMLDES-FTVKVADFGLAR  146 (262)
T ss_pred             CccccccCcceEEEcCC-CcEEECCccccc
Confidence            58999999999999874 678999999774

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.00  E-value=0.0015  Score=58.19  Aligned_cols=82  Identities=21%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEE--CCe---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRF--GDG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~---~v  110 (267)
                      -...|..|....||++...... ...+..+.+|+......  ..-...+|+.++..+..+.-..++++..  .++   ++
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEE
Confidence            3556778888999998632110 01246788888654321  1111236888888876543334444432  222   78


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      +||++|.++.
T Consensus        91 ~ey~~~g~L~  100 (343)
T cd05103          91 VEFCKFGNLS  100 (343)
T ss_pred             EeccCCCcHH
Confidence            9999987664

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.99  E-value=0.0067  Score=53.67  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+|||++++ +.+.|+||..|.
T Consensus       125 givH~dlkp~Nili~~~-~~~kl~Dfg~a~  153 (332)
T cd07857         125 NVLHRDLKPGNLLVNAD-CELKICDFGLAR  153 (332)
T ss_pred             CcccCCCCHHHeEEcCC-CCEEeCcCCCce
Confidence            48999999999999874 679999999774

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=96.97  E-value=0.005  Score=52.27  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc------c-ChHHHHHHHHHHHhCCCCceEEEEEC-Ce---e
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF------F-NRDDEIRTFECMSSQGQGPRLLGRFG-DG---R  109 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~------~-dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~  109 (267)
                      ..|..|.-+.+|++...     ++..+++|.........      . ...+|+++++.+..-++ ++.++.+. +.   +
T Consensus         6 ~~ig~g~~~~v~~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~l   79 (265)
T cd06631           6 EVLGKGAYGTVYCGLTN-----QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNI-VQYLGTCLDDNTISI   79 (265)
T ss_pred             ceEeccCCeEEEEEEEc-----CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCE-eeEeeEeecCCeEEE
Confidence            34566777899998642     24678888654322110      1 11356667766654333 34444433 22   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++||++|.++..              .+.+-+.  .       ....+..+..+                 +...++.+-
T Consensus        80 v~e~~~~~~L~~--------------~l~~~~~--~-------~~~~~~~~~~q-----------------i~~~l~~lH  119 (265)
T cd06631          80 FMEFVPGGSISS--------------ILNRFGP--L-------PEPVFCKYTKQ-----------------ILDGVAYLH  119 (265)
T ss_pred             EEecCCCCcHHH--------------HHHhcCC--C-------CHHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999875531              1111010  0       01122222221                 112223332


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ...++|+|++|.||++++ .+.+.++||..+.
T Consensus       120 --------~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~  150 (265)
T cd06631         120 --------NNCVVHRDIKGNNVMLMP-NGIIKLIDFGCAR  150 (265)
T ss_pred             --------hCCcccCCcCHHhEEECC-CCeEEeccchhhH
Confidence                    123899999999999986 4689999998764

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.95  E-value=0.0079  Score=56.69  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..+.
T Consensus       163 ~IiHrDLKP~NILl~~~-~~vkL~DFGls~  191 (496)
T PTZ00283        163 HMIHRDIKSANILLCSN-GLVKLGDFGFSK  191 (496)
T ss_pred             CEecCCCCHHHEEEeCC-CCEEEEecccCe
Confidence            58999999999999974 689999998763

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=96.95  E-value=0.0082  Score=53.16  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       127 ~i~H~dl~p~nill~~~-~~~kl~d~g~~~  155 (337)
T cd07852         127 NVIHRDLKPSNILLNSD-CRVKLADFGLAR  155 (337)
T ss_pred             CeecCCCCHHHEEEcCC-CcEEEeeccchh
Confidence            58999999999999974 689999998664

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=96.95  E-value=0.0033  Score=54.06  Aligned_cols=29  Identities=21%  Similarity=0.155  Sum_probs=25.1

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||++++ ++.+.++||..+.
T Consensus       129 ~iiH~dlkp~nili~~-~~~~kl~Dfg~~~  157 (279)
T cd05111         129 RMVHRNLAARNILLKS-DSIVQIADFGVAD  157 (279)
T ss_pred             CEeccccCcceEEEcC-CCcEEEcCCccce
Confidence            3899999999999987 4678999998763

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=96.93  E-value=0.0083  Score=51.12  Aligned_cols=31  Identities=16%  Similarity=0.133  Sum_probs=23.9

Q ss_pred             EEEEccCCCCCCeeeeCCCC------CEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETS------SITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~------~v~lIDwE~a~  229 (267)
                      ..++|+|++|.||+++.++.      .+.++||..+.
T Consensus       124 ~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~  160 (262)
T cd05077         124 KDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI  160 (262)
T ss_pred             CCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence            35899999999999975321      27889998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=96.92  E-value=0.0083  Score=51.63  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=25.0

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       128 ~i~H~dlkp~Nil~~~~-~~~kl~dfg~~~  156 (288)
T cd06616         128 KIIHRDVKPSNILLDRN-GNIKLCDFGISG  156 (288)
T ss_pred             CeeccCCCHHHEEEccC-CcEEEeecchhH
Confidence            48999999999999874 679999998763

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=96.89  E-value=0.027  Score=48.16  Aligned_cols=149  Identities=17%  Similarity=0.171  Sum_probs=75.9

Q ss_pred             EEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      ...+..|....+|+...... ....+..+.+|.......  ......+|..+++.+...++ .++++....+    ++++
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-v~~~~~~~~~~~~~lv~e   89 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV-VRLLGVVSQGQPTLVIME   89 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCe-eeEEEEEcCCCCeEEEEe
Confidence            34556676789998764310 011245788887643221  11111356676666643333 4455555432    7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-CCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      |++|.++..              .+.+.+....... .....+..+..+..                 .+...+..+-+ 
T Consensus        90 ~~~~~~L~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~l~~lH~-  137 (277)
T cd05062          90 LMTRGDLKS--------------YLRSLRPEMENNPVQAPPSLKKMIQMAG-----------------EIADGMAYLNA-  137 (277)
T ss_pred             cCCCCCHHH--------------HHHHcCccccccccccCCCHHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            998765431              1111111100000 00011111111111                 12223333321 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++++ +.+.++||..+.
T Consensus       138 -------~~~vH~dlkp~Nil~~~~-~~~~l~dfg~~~  167 (277)
T cd05062         138 -------NKFVHRDLAARNCMVAED-FTVKIGDFGMTR  167 (277)
T ss_pred             -------CCcccCCcchheEEEcCC-CCEEECCCCCcc
Confidence                   248999999999999974 679999999764

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=96.85  E-value=0.013  Score=51.20  Aligned_cols=143  Identities=13%  Similarity=0.073  Sum_probs=77.2

Q ss_pred             EEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEEC-C---eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFG-D---GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~---~~v~e  112 (267)
                      ...|..|....+|+++.... .......+.+|....... . ......|.++++.+.++.-..++++.+. +   .+++|
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e  119 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITE  119 (302)
T ss_pred             cceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEE
Confidence            34566677789999863110 011235677887654321 1 1112468888888855544444555443 2   28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .   ++.....    .-....+..+..                 .+...+..+-   
T Consensus       120 ~~~~~~L~~--------------~---i~~~~~~----~l~~~~~~~i~~-----------------~i~~~l~~lH---  158 (302)
T cd05055         120 YCCYGDLLN--------------F---LRRKRES----FLTLEDLLSFSY-----------------QVAKGMAFLA---  158 (302)
T ss_pred             cCCCCcHHH--------------H---HHhCCCC----CCCHHHHHHHHH-----------------HHHHHHHHHH---
Confidence            998766532              0   1111000    001111222211                 1222233332   


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ...++|+|++|.||++++ ++.+.++||..+.
T Consensus       159 -----~~~ivH~dlkp~Nil~~~-~~~~~l~dfg~~~  189 (302)
T cd05055         159 -----SKNCIHRDLAARNVLLTH-GKIVKICDFGLAR  189 (302)
T ss_pred             -----HCCeehhhhccceEEEcC-CCeEEECCCcccc
Confidence                 124899999999999986 4678899998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=96.83  E-value=0.013  Score=50.10  Aligned_cols=29  Identities=31%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.++||..+.
T Consensus       137 ~i~H~di~p~nil~~~~-~~~kl~d~g~~~  165 (280)
T cd05043         137 GVIHKDIAARNCVIDEE-LQVKITDNALSR  165 (280)
T ss_pred             CEeecccCHhhEEEcCC-CcEEECCCCCcc
Confidence            58999999999999864 678999999874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=96.82  E-value=0.006  Score=52.92  Aligned_cols=29  Identities=21%  Similarity=0.281  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||++++ .+.+.|+||..+.
T Consensus       135 ~i~H~dl~p~nill~~-~~~~kL~dfg~~~  163 (296)
T cd06618         135 GVIHRDVKPSNILLDA-SGNVKLCDFGISG  163 (296)
T ss_pred             CEecCCCcHHHEEEcC-CCCEEECccccch
Confidence            5899999999999986 4689999998764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=96.81  E-value=0.01  Score=51.22  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|++|.||++++ ++.+.|.||..+.
T Consensus       146 ~~ivH~dikp~nill~~-~~~~kl~dfg~~~  175 (290)
T cd05045         146 MKLVHRDLAARNVLVAE-GRKMKISDFGLSR  175 (290)
T ss_pred             CCeehhhhhhheEEEcC-CCcEEeccccccc
Confidence            45999999999999987 4678999998874

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=96.78  E-value=0.019  Score=50.36  Aligned_cols=137  Identities=12%  Similarity=0.075  Sum_probs=74.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      .+..+..|..+.+|++....    .+..+++|.......   .. .+...|.++++.+..-++ ++.++...  +.  ++
T Consensus        25 ~~~~lg~g~~g~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv   99 (313)
T cd06633          25 GLHEIGHGSFGAVYFATNSH----TNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNT-IEYKGCYLKEHTAWLV   99 (313)
T ss_pred             cceeeccCCCeEEEEEEECC----CCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCC-ccEEEEEEeCCEEEEE
Confidence            34557778788999997543    357888887653221   11 112357777777654333 33444432  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|+.|....        ..          .....+    .+ ......+..                 .+...+..+.+
T Consensus       100 ~e~~~~~l~~--------~l----------~~~~~~----l~-~~~~~~~~~-----------------qi~~al~~LH~  139 (313)
T cd06633         100 MEYCLGSASD--------LL----------EVHKKP----LQ-EVEIAAITH-----------------GALQGLAYLHS  139 (313)
T ss_pred             EecCCCCHHH--------HH----------HhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            9998652111        00          000000    01 111111211                 12223333322


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       140 --------~gi~H~dl~p~nili~~~-~~~kL~dfg~~~  169 (313)
T cd06633         140 --------HNMIHRDIKAGNILLTEP-GQVKLADFGSAS  169 (313)
T ss_pred             --------CCeecCCCChhhEEECCC-CCEEEeecCCCc
Confidence                    248999999999999874 679999998765

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=96.78  E-value=0.014  Score=49.72  Aligned_cols=29  Identities=24%  Similarity=0.251  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       132 ~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  160 (272)
T cd05075         132 SFIHRDLAARNCMLNEN-MNVCVADFGLSK  160 (272)
T ss_pred             CeeccccchhheEEcCC-CCEEECCCCccc
Confidence            48999999999999874 679999998765

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=96.77  E-value=0.0092  Score=53.09  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       137 ~i~H~dlkp~NIll~~~-~~~kL~dfg~~~  165 (342)
T cd07879         137 GIIHRDLKPGNLAVNED-CELKILDFGLAR  165 (342)
T ss_pred             CcccCCCCHHHEEECCC-CCEEEeeCCCCc
Confidence            48999999999999874 789999998774

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=96.76  E-value=0.0088  Score=50.95  Aligned_cols=140  Identities=14%  Similarity=0.052  Sum_probs=75.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECC---eeEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e~i  114 (267)
                      ...+..|-...+|++...... +....+.+|.+..... .. ....+|..+++.+....+ .+.++...+   .++++|.
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~-~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-~~~~~~~~~~~~~lv~e~~   88 (270)
T cd05056          11 GRCIGEGQFGDVYQGVYMSPE-NEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHI-VKLIGVITENPVWIVMELA   88 (270)
T ss_pred             eeeeCCccceeEEEEEEecCC-CCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCch-hceeEEEcCCCcEEEEEcC
Confidence            345677778899998753211 1235678887754431 11 112367777777754333 334554433   2788888


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .+   .   .. ... ...+..+..                 .+...++.+-     
T Consensus        89 ~~~~L~~-------~l-------~~---~---~~-~~~-~~~~~~~~~-----------------~l~~~l~~lH-----  124 (270)
T cd05056          89 PLGELRS-------YL-------QV---N---KY-SLD-LASLILYSY-----------------QLSTALAYLE-----  124 (270)
T ss_pred             CCCcHHH-------HH-------Hh---C---CC-CCC-HHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8755532       11       00   0   00 000 111111111                 1222223332     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ...++|+|++|.||+++.+ +.+.++||+.+.
T Consensus       125 ---~~~~~H~dl~p~nili~~~-~~~~l~d~g~~~  155 (270)
T cd05056         125 ---SKRFVHRDIAARNVLVSSP-DCVKLGDFGLSR  155 (270)
T ss_pred             ---hCCeeccccChheEEEecC-CCeEEccCceee
Confidence               2348999999999999874 689999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.013  Score=50.56  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHhhccCCCCCC------CCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH----HhCC--C
Q 024452          127 PKISELVAAKMREFHDLKMPGP------RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE----KELP--N  194 (267)
Q Consensus       127 ~~i~~~la~~La~lH~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----~~l~--~  194 (267)
                      ++...++|+.++++|+.....+      ....+.-.++.-+++........ .....++.++...+..-    ..+.  .
T Consensus       126 ~~~l~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~-~s~~~~d~i~~~t~~f~e~~~~lf~~R~  204 (337)
T COG2187         126 ESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIV-QSKQQIDRIEHMTEEFLERHGPLFDRRI  204 (337)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCccccccCCHHHHHhHHHhhHHHHhhhcCcc-cCHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4567899999999999765311      11122223333233322111110 01111233333222211    1111  1


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEee---cc-cCcchHhHHHHh
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVS---FT-FLQNMLNFKRAC  239 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDw---E~-a~~~~~~fD~A~  239 (267)
                      .....+=||||+|.+||.+-+  +++.|+|-   .. -.+.+..||.|.
T Consensus       205 ~~g~IRecHGDLhl~ni~l~d--g~~~LFDCIEFNd~fr~iDv~~D~AF  251 (337)
T COG2187         205 AEGFIRECHGDLHLRNICLWD--GEPALFDCIEFNDPFRFIDVLYDLAF  251 (337)
T ss_pred             hcCCceecccchhhcceeeec--CcceEEEEeecCCcchHHHHHHHHHH
Confidence            366788999999999999874  56777663   32 245777788664

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=96.74  E-value=0.0057  Score=55.63  Aligned_cols=139  Identities=17%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      .+..|.-..||++....    .+..+-+|+-.+..    ....+..+|+++++.++.+--.-.++..++  +.  +|+|+
T Consensus        42 ~lG~G~Fg~v~~~~~~~----tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL  117 (382)
T KOG0032|consen   42 ELGRGQFGVVYLCREKS----TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMEL  117 (382)
T ss_pred             hhCCCCceEEEEEEecC----CCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEe
Confidence            56788888999998653    25677777653321    111233689999999986433333444443  22  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+-          ..+.+.    | .     .+.+    -....                 ..+.+.+..+     
T Consensus       118 ~~GGeLf----------d~i~~~----~-~-----sE~d----a~~~~-----------------~~il~av~~l-----  151 (382)
T KOG0032|consen  118 CEGGELF----------DRIVKK----H-Y-----SERD----AAGII-----------------RQILEAVKYL-----  151 (382)
T ss_pred             cCCchHH----------HHHHHc----c-C-----CHHH----HHHHH-----------------HHHHHHHHHH-----
Confidence            9975442          122222    1 1     0000    00001                 1112222222     


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCC---CCEEEEeecccCcchH
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEET---SSITIIVSFTFLQNML  233 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~---~~v~lIDwE~a~~~~~  233 (267)
                         +..+++|+|++|.|+|+....   +.+.++||..|.+...
T Consensus       152 ---H~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~  191 (382)
T KOG0032|consen  152 ---HSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP  191 (382)
T ss_pred             ---HhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC
Confidence               227799999999999997642   3699999999986443

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=96.72  E-value=0.021  Score=51.60  Aligned_cols=136  Identities=20%  Similarity=0.201  Sum_probs=78.4

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCce-EEEEEcCCCcc---cccChHHHHHHHHHHHhCCCCceEEEEEC--C---eeEEEe
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARN-VLVRIYGEGVE---VFFNRDDEIRTFECMSSQGQGPRLLGRFG--D---GRVEEF  113 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~-~vlRi~~~~~~---~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~---~~v~e~  113 (267)
                      +..|.-.+||+..+.+      .. +.+|+......   ...+-.+|+.++..|..-.+.. .++...  .   ++|+||
T Consensus        49 iG~G~~g~V~~~~~~g------~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~-f~G~~~~~~~~~~iVtEy  121 (362)
T KOG0192|consen   49 LGSGSFGTVYKGKWRG------TDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQ-FYGACTSPPGSLCIVTEY  121 (362)
T ss_pred             cccCCceeEEEEEeCC------ceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeee-EEEEEcCCCCceEEEEEe
Confidence            5668789999998753      44 77887765321   1111247888888876644333 444432  2   389999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|..+..-                 +|.. .  .....+...+ .|.-                 .+..-+++|-.   
T Consensus       122 ~~~GsL~~~-----------------l~~~-~--~~~l~~~~~l-~~al-----------------diArGm~YLH~---  160 (362)
T KOG0192|consen  122 MPGGSLSVL-----------------LHKK-R--KRKLPLKVRL-RIAL-----------------DIARGMEYLHS---  160 (362)
T ss_pred             CCCCcHHHH-----------------Hhhc-c--cCCCCHHHHH-HHHH-----------------HHHHHHHHHhc---
Confidence            998776531                 1111 0  0011111111 1211                 12223344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        ..+  ++|+||++.|||++.+...+.|-||..+..
T Consensus       161 --~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  161 --EGP--IIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             --CCC--eeecccChhhEEEcCCCCEEEECCCcccee
Confidence              222  999999999999997422688999998854

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=96.71  E-value=0.0052  Score=54.37  Aligned_cols=141  Identities=12%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG--  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~--  108 (267)
                      ++++ +..|..|--..||.|.-.+    .++-|.+|+-.+..    +..-...+|..++..+ ++-+-..+++.+.++  
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~d----t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v-~hPFiv~l~ysFQt~~k   99 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKD----TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKI-KHPFIVKLIYSFQTEEK   99 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcc----cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhC-CCCcEeeeEEecccCCe
Confidence            4555 4445777789999998543    35778888765421    0000113566666663 222223344445433  


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        +|.+|+.|..+-..                 |.+       +..+.+...+++-                ..+.-.++
T Consensus       100 LylVld~~~GGeLf~h-----------------L~~-------eg~F~E~~arfYl----------------aEi~lAL~  139 (357)
T KOG0598|consen  100 LYLVLDYLNGGELFYH-----------------LQR-------EGRFSEDRARFYL----------------AEIVLALG  139 (357)
T ss_pred             EEEEEeccCCccHHHH-----------------HHh-------cCCcchhHHHHHH----------------HHHHHHHH
Confidence              88999998655320                 000       0011122222221                12223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .|        +...++|+|++|.|||++.+ |-+.|-||..|..
T Consensus       140 ~L--------H~~gIiyRDlKPENILLd~~-GHi~LtDFgL~k~  174 (357)
T KOG0598|consen  140 YL--------HSKGIIYRDLKPENILLDEQ-GHIKLTDFGLCKE  174 (357)
T ss_pred             HH--------HhCCeeeccCCHHHeeecCC-CcEEEeccccchh
Confidence            44        33459999999999999985 6799999998874

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.66  E-value=0.0039  Score=53.29  Aligned_cols=135  Identities=15%  Similarity=0.059  Sum_probs=72.9

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccc-cChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVF-FNRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~  113 (267)
                      ..+..|..+.+|++....    .+..+++|+.....  ... .....|+.+++.+...++. ++++..  .+.  ++++|
T Consensus         5 ~~ig~g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~-~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           5 EKLGEGTYGVVYKARDKK----TGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIV-KLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             hcccccCcceEEEeeecC----CCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHH-HHHhhhhcCCceEEEecC
Confidence            345667788999997643    35789999876542  111 1123677777777543332 222222  122  77888


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      .++ ++..              .+.+-.   .+    .+ ......+..                 .+...+..|.+   
T Consensus        80 ~~~-~l~~--------------~i~~~~---~~----~~-~~~~~~~~~-----------------~i~~~l~~LH~---  116 (282)
T cd07829          80 CDM-DLKK--------------YLDKRP---GP----LS-PNLIKSIMY-----------------QLLRGLAYCHS---  116 (282)
T ss_pred             cCc-CHHH--------------HHHhhc---cC----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            764 2211              111100   00    01 111111211                 12222333332   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|+++.||++++ ++.+.|.||..+.
T Consensus       117 -----~~i~H~~l~~~ni~~~~-~~~~~l~d~g~~~  146 (282)
T cd07829         117 -----HRILHRDLKPQNILINR-DGVLKLADFGLAR  146 (282)
T ss_pred             -----CCcccCCCChheEEEcC-CCCEEEecCCccc
Confidence                 24899999999999987 4689999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=96.65  E-value=0.0081  Score=53.17  Aligned_cols=29  Identities=21%  Similarity=0.238  Sum_probs=25.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|.||..+.
T Consensus       127 ~ivH~dlkp~Nil~~~~-~~~kl~dfg~~~  155 (334)
T cd07855         127 NVIHRDLKPSNLLVNED-CELRIGDFGMAR  155 (334)
T ss_pred             CeecCCCCHHHEEEcCC-CcEEecccccce
Confidence            48999999999999974 689999998763

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=96.63  E-value=0.015  Score=51.26  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=41.0

Q ss_pred             ecCc--eeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEE--CCe--eEEEe
Q 024452           43 LKGA--MTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRF--GDG--RVEEF  113 (267)
Q Consensus        43 l~~G--~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~~--~v~e~  113 (267)
                      |..|  -...+|++....    ++..+.+|......  .... ....|+.+++.+..-.+.+ +++.+  ++.  +|++|
T Consensus         6 ig~G~~~~~~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~-~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           6 IGRGFEDLMTVNLARYKP----TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVP-YRATFIADNELWVVTSF   80 (327)
T ss_pred             ccccccceEEEEEEeecc----cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeee-EEEEEEECCEEEEEEec
Confidence            4455  246788887543    35778888764321  1111 1135777777775444433 44443  222  78999


Q ss_pred             ecCCCCC
Q 024452          114 IHARTLS  120 (267)
Q Consensus       114 i~G~~l~  120 (267)
                      ++|.++.
T Consensus        81 ~~~~~l~   87 (327)
T cd08227          81 MAYGSAK   87 (327)
T ss_pred             cCCCcHH
Confidence            9876653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=96.61  E-value=0.0086  Score=53.26  Aligned_cols=30  Identities=23%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++++||+++.++..+.++||..+.
T Consensus       134 givH~dikp~Nili~~~~~~~kl~dfg~~~  163 (342)
T cd07854         134 NVLHRDLKPANVFINTEDLVLKIGDFGLAR  163 (342)
T ss_pred             CcccCCCCHHHEEEcCCCceEEECCcccce
Confidence            489999999999998644567899998774

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=96.61  E-value=0.021  Score=50.93  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       140 ~ivH~dlkp~NIll~~~-~~~kl~dfg~~~  168 (345)
T cd07877         140 DIIHRDLKPSNLAVNED-CELKILDFGLAR  168 (345)
T ss_pred             CeeecCCChHHEEEcCC-CCEEEecccccc
Confidence            48999999999999974 689999998654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=96.59  E-value=0.0036  Score=53.10  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             EEEccCCCCCCeeeeCCCCC-------EEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSS-------ITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~-------v~lIDwE~a~  229 (267)
                      .++|+|++|.||++++++..       +.+.||+.+.
T Consensus       120 ~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078         120 GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             CeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            48999999999999864322       5789988663

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=96.57  E-value=0.037  Score=56.06  Aligned_cols=77  Identities=14%  Similarity=0.065  Sum_probs=46.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEE--C--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRF--G--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~--~~--~  109 (267)
                      -+..|..|-...||++....    .+..+.+|+.....  .... ....|+.+++.|..-.+.+ ++..+  .  +.  +
T Consensus        17 Il~kLG~GgFGtVYLAkdk~----tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVr-l~d~f~de~~~~lyI   91 (1021)
T PTZ00266         17 VIKKIGNGRFGEVFLVKHKR----TQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVR-YIDRFLNKANQKLYI   91 (1021)
T ss_pred             EEEEEecCCCeEEEEEEECC----CCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCe-EEEEEEecCCCEEEE
Confidence            45667778789999998643    24677777654321  1111 1136888888886544443 44432  2  22  7


Q ss_pred             EEEeecCCCCC
Q 024452          110 VEEFIHARTLS  120 (267)
Q Consensus       110 v~e~i~G~~l~  120 (267)
                      |++|++|.++.
T Consensus        92 VMEY~~gGSL~  102 (1021)
T PTZ00266         92 LMEFCDAGDLS  102 (1021)
T ss_pred             EEeCCCCCcHH
Confidence            89999987663

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=96.52  E-value=0.019  Score=52.67  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             EEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~  113 (267)
                      ..|..|....||++..... .......+.+|+....... .. .-.+|..++..+..+--..++++.+.. +   +|+||
T Consensus        43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E~  122 (401)
T cd05107          43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEY  122 (401)
T ss_pred             hhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEec
Confidence            5678888999999975320 0012357888987543211 11 113677777777644333445555432 2   88999


Q ss_pred             ecCCCCC
Q 024452          114 IHARTLS  120 (267)
Q Consensus       114 i~G~~l~  120 (267)
                      ++|..+.
T Consensus       123 ~~~g~L~  129 (401)
T cd05107         123 CRYGDLV  129 (401)
T ss_pred             cCCCcHH
Confidence            9987653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.49  E-value=0.0008  Score=56.24  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      ...++.|+|.+|.|+|++....++.+|||..|.+-.
T Consensus       149 HS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYH  184 (338)
T KOG0668|consen  149 HSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYH  184 (338)
T ss_pred             HhcCcccccCCcceeeechhhceeeeeecchHhhcC
Confidence            557799999999999999876789999999886533

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=96.37  E-value=0.0045  Score=59.11  Aligned_cols=140  Identities=18%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccCh---HHHHHHHHHHHhCCCC-------ceEEEEECCe-
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNR---DDEIRTFECMSSQGQG-------PRLLGRFGDG-  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr---~~E~~~~~~l~~~gl~-------P~v~~~~~~~-  108 (267)
                      -+.+..|....||+-....    .|..+.+|.+++.. ..-+|   -+|+++++.|....++       +...+..... 
T Consensus        18 ~e~LG~Ga~g~V~rgrnke----tG~~vAvK~~~~~~-~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~   92 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKE----TGRLVAVKTFNKES-SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP   92 (732)
T ss_pred             hhhhcCCccceeeeecccc----cccchhHHhhhhhc-ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence            3456778889999987443    35777788776532 12222   2799999998843321       1111111112 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       .++||..|..+.. .+.+|+-+.                 .-+.  .   .++..              +..+...+..
T Consensus        93 vlvmEyC~gGsL~~-~L~~PEN~~-----------------GLpE--~---e~l~l--------------L~d~~~al~~  135 (732)
T KOG4250|consen   93 VLVMEYCSGGSLRK-VLNSPENAY-----------------GLPE--S---EFLDL--------------LSDLVSALRH  135 (732)
T ss_pred             eEEEeecCCCcHHH-HhcCccccc-----------------CCCH--H---HHHHH--------------HHHHHHHHHH
Confidence             6789998876643 122221100                 0010  0   01111              1223334445


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCC-CC--EEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEET-SS--ITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~-~~--v~lIDwE~a~  229 (267)
                      |++        ..+||+|++|+||+..... ++  ..|+||.+|.
T Consensus       136 LrE--------n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen  136 LRE--------NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             HHH--------cCceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            543        4599999999999986421 22  4699999885

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=96.32  E-value=0.0038  Score=51.52  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +....++|+|.+|+|||++-+ |+|.+-||.-|++
T Consensus       165 ~~kL~vIHRDvKPsNiLIn~~-GqVKiCDFGIsG~  198 (282)
T KOG0984|consen  165 HSKLSVIHRDVKPSNILINYD-GQVKICDFGISGY  198 (282)
T ss_pred             HHHhhhhhccCCcceEEEccC-CcEEEccccccee
Confidence            345569999999999999974 7899999999987

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.29  E-value=0.0043  Score=58.47  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=32.7

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHH
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKR  237 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~  237 (267)
                      ..+.+|+||+|+|||++++.+.+.|+||.++..-.+.+|-
T Consensus       433 ~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~t  472 (612)
T KOG0603|consen  433 EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDT  472 (612)
T ss_pred             hcCeeecCCChhheeecCCCCcEEEEEechhhhCchhhcc
Confidence            3789999999999999533467999999999887666553

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=96.22  E-value=0.038  Score=47.84  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|.||+.+.
T Consensus       139 ~i~H~dl~p~nil~~~~-~~~kl~dfg~~~  167 (310)
T cd07865         139 KILHRDMKAANILITKD-GILKLADFGLAR  167 (310)
T ss_pred             CeeccCCCHHHEEECCC-CcEEECcCCCcc
Confidence            48999999999999874 678999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.21  E-value=0.06  Score=47.67  Aligned_cols=64  Identities=11%  Similarity=0.038  Sum_probs=40.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHh-C--CCCceEEEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSS-Q--GQGPRLLGRF  105 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~-~--gl~P~v~~~~  105 (267)
                      -...|..|.-+.+|.|.....   ....+++|+-........ ....|..++..+.. .  .-.|.++..+
T Consensus        22 i~~~iG~G~fG~V~~v~~~~~---~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G   89 (322)
T KOG1164|consen   22 LGKKIGEGGFGAVYLVSDKSE---KNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHG   89 (322)
T ss_pred             EeeeccccCCceEEEEEecCC---CCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEec
Confidence            355667888999999985321   124688887654321111 12479999999985 2  2358888777

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=96.18  E-value=0.11  Score=44.04  Aligned_cols=143  Identities=15%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ...|..|.-..+|+++........+..+++|+.......  ..+-.+|++.++.+ ++--..++++....    .+|+||
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL-RHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH-SBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc-cccccccccccccccccccccccc
Confidence            345677777899999876211123578889988553221  11223677777777 44334556666532    288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      .++.++..       ....-          .  .. ..+ ......|..                 .+...+..|.+.  
T Consensus        83 ~~~g~L~~-------~L~~~----------~--~~-~~~-~~~~~~i~~-----------------~i~~~l~~Lh~~--  122 (259)
T PF07714_consen   83 CPGGSLDD-------YLKSK----------N--KE-PLS-EQQRLSIAI-----------------QIAEALSYLHSN--  122 (259)
T ss_dssp             -TTEBHHH-------HHHHT----------C--TT-TSB-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             cccccccc-------ccccc----------c--cc-ccc-ccccccccc-----------------cccccccccccc--
Confidence            98765542       11100          0  00 011 112222222                 223333445431  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                        +    ++|+|+.+.||+++.+ +.+.|.||..+..
T Consensus       123 --~----iiH~~l~~~nill~~~-~~~Kl~~f~~~~~  152 (259)
T PF07714_consen  123 --N----IIHGNLSPSNILLDSN-GQVKLSDFGLSRP  152 (259)
T ss_dssp             --T----EEEST-SGGGEEEETT-TEEEEESTTTGEE
T ss_pred             --c----cccccccccccccccc-ccccccccccccc
Confidence              2    8999999999999974 6889999987754

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=96.17  E-value=0.11  Score=51.26  Aligned_cols=143  Identities=14%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             CcEEE-EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC-------C
Q 024452           36 DALQV-IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG-------D  107 (267)
Q Consensus        36 ~~~~i-~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-------~  107 (267)
                      +...| ..+..|....+|+++...    ++.-..+||-..+...-...+.|+.+++.+..+--.++-|+.+.       +
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~----~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~D   94 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVK----TGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGD   94 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeee----cCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCC
Confidence            34444 444778778999997433    35677888876654332233678999999988876777776641       1


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        |+||||..|.+++.           |.+-+.   .     .   .+.+   .|+.-+                +.+.+
T Consensus        95 qLWLVMEfC~gGSVTD-----------LVKn~~---g-----~---rl~E---~~IaYI----------------~re~l  133 (953)
T KOG0587|consen   95 QLWLVMEFCGGGSVTD-----------LVKNTK---G-----N---RLKE---EWIAYI----------------LREIL  133 (953)
T ss_pred             eEEEEeeccCCccHHH-----------HHhhhc---c-----c---chhh---HHHHHH----------------HHHHH
Confidence              38999999877653           111111   0     0   0001   122111                11111


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .-+.+     -+....+|+|++-.|||.+.+ ++|.++||.-++
T Consensus       134 rgl~H-----LH~nkviHRDikG~NiLLT~e-~~VKLvDFGvSa  171 (953)
T KOG0587|consen  134 RGLAH-----LHNNKVIHRDIKGQNVLLTEN-AEVKLVDFGVSA  171 (953)
T ss_pred             HHHHH-----HhhcceeeecccCceEEEecc-CcEEEeeeeeee
Confidence            12221     244568999999999999974 789999998664

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.12  E-value=0.028  Score=49.80  Aligned_cols=30  Identities=17%  Similarity=0.200  Sum_probs=25.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .++|+|++|.||+++.+ +.+.|+||..+..
T Consensus       128 ~i~H~dlkp~Nil~~~~-~~~kL~Dfg~~~~  157 (337)
T cd07858         128 NVLHRDLKPSNLLLNAN-CDLKICDFGLART  157 (337)
T ss_pred             CEecCCCCHHHEEEcCC-CCEEECcCccccc
Confidence            48999999999999874 6799999997753

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=96.10  E-value=0.0059  Score=55.86  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ...++.++|+|++..|||+.+| ....|=||..|..
T Consensus       331 d~~Kp~IaHRDlkSkNVLvK~D-lTccIaDFGLAl~  365 (534)
T KOG3653|consen  331 DHHKPPIAHRDLKSKNVLVKND-LTCCIADFGLALR  365 (534)
T ss_pred             CCCCCccccccccccceEEccC-CcEEeeccceeEE
Confidence            3566889999999999999874 6778999999864

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.07  E-value=0.07  Score=51.06  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      +..+..|-=..|+.++...    ++..|.+|+..++.    +.......|..++..++++-+...++..+...    .||
T Consensus       373 l~vLGkGsFGkV~lae~k~----~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvm  448 (694)
T KOG0694|consen  373 LAVLGRGSFGKVLLAELKG----TNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVM  448 (694)
T ss_pred             EEEeccCcCceEEEEEEcC----CCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEE
Confidence            4445667677888888754    35788899876653    11111246888998888776666666666432    899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||+.|..+....                 |.-.      .+  +.-.+++..                .+.-.+..|   
T Consensus       449 ey~~Ggdm~~~~-----------------~~~~------F~--e~rarfyaA----------------ev~l~L~fL---  484 (694)
T KOG0694|consen  449 EYVAGGDLMHHI-----------------HTDV------FS--EPRARFYAA----------------EVVLGLQFL---  484 (694)
T ss_pred             EecCCCcEEEEE-----------------eccc------cc--HHHHHHHHH----------------HHHHHHHHH---
Confidence            999986632110                 0000      00  111112221                111122333   


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                           +...++++|++.+|||.|.+ |-+.|.||..|.-|.
T Consensus       485 -----H~~~IIYRDlKLdNiLLD~e-Gh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  485 -----HENGIIYRDLKLDNLLLDTE-GHVKIADFGLCKEGM  519 (694)
T ss_pred             -----HhcCceeeecchhheEEccc-CcEEecccccccccC
Confidence                 34569999999999999985 679999999997655

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=95.99  E-value=0.016  Score=49.04  Aligned_cols=29  Identities=21%  Similarity=0.096  Sum_probs=24.5

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|+.|.||++++  +.+.++||..+.
T Consensus       125 ~~i~h~~l~~~nili~~--~~~~l~d~g~~~  153 (260)
T cd08222         125 RRILHRDLKAKNIFLKN--NLLKIGDFGVSR  153 (260)
T ss_pred             cCccccCCChhheEeec--CCEeecccCcee
Confidence            45899999999999984  468999998663

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.94  E-value=0.068  Score=54.43  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeecC
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIHA  116 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~G  116 (267)
                      ..+..|....||++....    ++..+++|....... .  ...|++.++.+..-+ ..++++.+.+    .+|+||++|
T Consensus       696 ~~ig~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~-~--~~~~~~~l~~l~Hpn-Iv~~~~~~~~~~~~~lv~Ey~~~  767 (968)
T PLN00113        696 NVISRGKKGASYKGKSIK----NGMQFVVKEINDVNS-I--PSSEIADMGKLQHPN-IVKLIGLCRSEKGAYLIHEYIEG  767 (968)
T ss_pred             cEEccCCCeeEEEEEECC----CCcEEEEEEccCCcc-c--cHHHHHHHhhCCCCC-cceEEEEEEcCCCCEEEEeCCCC
Confidence            346777788999997542    357888887643221 1  135666666663333 3456666532    289999998


Q ss_pred             CCCC
Q 024452          117 RTLS  120 (267)
Q Consensus       117 ~~l~  120 (267)
                      ..+.
T Consensus       768 g~L~  771 (968)
T PLN00113        768 KNLS  771 (968)
T ss_pred             CcHH
Confidence            6653

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.92  E-value=0.019  Score=54.79  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      +..|-+|.|=..+...    .|+...+|+-....   +. ....++|+.+|+.+..-.+ =++|...++.    +|.||+
T Consensus        20 LG~Gstg~vrlakh~~----TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnV-l~LydVwe~~~~lylvlEyv   94 (786)
T KOG0588|consen   20 LGKGSTGCVRLAKHAE----TGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNV-LRLYDVWENKQHLYLVLEYV   94 (786)
T ss_pred             ccCCCCceehhhhccc----ccceeEEEeeccccccccccccchhhhhHHHHHhcCCCe-eeeeeeeccCceEEEEEEec
Confidence            4566677776665432    35777788764431   11 2223689999999977321 1233333322    789999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+-..-      .+              .++ .+.  ..-.+|+.++                    +.-+.     
T Consensus        95 ~gGELFdyl------v~--------------kG~-l~e--~eaa~ff~QI--------------------i~gv~-----  126 (786)
T KOG0588|consen   95 PGGELFDYL------VR--------------KGP-LPE--REAAHFFRQI--------------------LDGVS-----  126 (786)
T ss_pred             CCchhHHHH------Hh--------------hCC-CCC--HHHHHHHHHH--------------------HHHHH-----
Confidence            986553211      00              010 000  0111222221                    11110     


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      .=+...+||+|++|.|++++.. +.+.|=||..|+.-
T Consensus       127 yCH~~~icHRDLKpENlLLd~~-~nIKIADFGMAsLe  162 (786)
T KOG0588|consen  127 YCHAFNICHRDLKPENLLLDVK-NNIKIADFGMASLE  162 (786)
T ss_pred             HHhhhcceeccCCchhhhhhcc-cCEeeeccceeecc
Confidence            1234569999999999999975 56999999998763

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=95.92  E-value=0.1  Score=49.32  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=85.6

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---c-cccCh-----HHHHHHHHHHHhCCC--CceEEEE
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---E-VFFNR-----DDEIRTFECMSSQGQ--GPRLLGR  104 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~-~~~dr-----~~E~~~~~~l~~~gl--~P~v~~~  104 (267)
                      +-.+++++..|....|+.+....    +...+|+|.-.+..   + -.-||     ..|+++|..|+++-=  --+++.+
T Consensus       562 ~yttlq~lG~GAyGkV~lai~K~----n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf  637 (772)
T KOG1152|consen  562 DYTTLQPLGEGAYGKVNLAIHKE----NNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF  637 (772)
T ss_pred             cceeeeeccccccceEEEeeecc----cceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence            34689999999999999997653    24677888654432   0 01122     379999999986532  2456666


Q ss_pred             ECCe---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhH
Q 024452          105 FGDG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTL  181 (267)
Q Consensus       105 ~~~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  181 (267)
                      +++.   .+.--+.|..++                                +|+.++    ...++. +        ..-
T Consensus       638 FEddd~yyl~te~hg~gID--------------------------------LFd~IE----~kp~m~-E--------~eA  672 (772)
T KOG1152|consen  638 FEDDDYYYLETEVHGEGID--------------------------------LFDFIE----FKPRMD-E--------PEA  672 (772)
T ss_pred             eecCCeeEEEecCCCCCcc--------------------------------hhhhhh----ccCccc-h--------HHH
Confidence            6542   222223343332                                222111    000000 0        000


Q ss_pred             HHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc-chHhHH
Q 024452          182 KDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ-NMLNFK  236 (267)
Q Consensus       182 ~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~-~~~~fD  236 (267)
                      .-...++.... +.-++..++|+|++-.||+++.+ |-+.+|||.-|++ -.--||
T Consensus       673 k~IFkQV~agi-~hlh~~~ivhrdikdenvivd~~-g~~klidfgsaa~~ksgpfd  726 (772)
T KOG1152|consen  673 KLIFKQVVAGI-KHLHDQGIVHRDIKDENVIVDSN-GFVKLIDFGSAAYTKSGPFD  726 (772)
T ss_pred             HHHHHHHHhcc-ccccccCceecccccccEEEecC-CeEEEeeccchhhhcCCCcc
Confidence            01112222221 12356789999999999999974 6799999999887 333355

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=95.84  E-value=0.0037  Score=54.24  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=27.0

Q ss_pred             EEEEccCCCCCCeeeeCCCC--CEEEEeecccCcch
Q 024452          199 IGFCHNDLQYGNIMIDEETS--SITIIVSFTFLQNM  232 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~~~~  232 (267)
                      ..+.|+|++|.|+|+...+.  .+.|-||.||....
T Consensus       180 ~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  180 MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             cchhhccCChhheeeecCCCCcceEecccccccccC
Confidence            44889999999999986422  47899999997644

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=95.82  E-value=0.095  Score=48.48  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=80.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~  113 (267)
                      ..|..|.=..||...+...     .++-+|.-..+.   ..+.   +|+++|+.|+...++ +++++... +   +|+||
T Consensus       212 ~~LG~G~FG~V~~g~~~~~-----~~vavk~ik~~~m~~~~f~---~Ea~iMk~L~H~~lV-~l~gV~~~~~piyIVtE~  282 (468)
T KOG0197|consen  212 RELGSGQFGEVWLGKWNGS-----TKVAVKTIKEGSMSPEAFL---REAQIMKKLRHEKLV-KLYGVCTKQEPIYIVTEY  282 (468)
T ss_pred             HHhcCCccceEEEEEEcCC-----CcccceEEeccccChhHHH---HHHHHHHhCcccCeE-EEEEEEecCCceEEEEEe
Confidence            4467788888888887642     344455443332   2333   799999999875443 45665542 2   89999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++-..+..              .|.+ |.     ....+ ..++-.|..+                 +.+-+++|++   
T Consensus       283 m~~GsLl~--------------yLr~-~~-----~~~l~-~~~Ll~~a~q-----------------IaeGM~YLes---  321 (468)
T KOG0197|consen  283 MPKGSLLD--------------YLRT-RE-----GGLLN-LPQLLDFAAQ-----------------IAEGMAYLES---  321 (468)
T ss_pred             cccCcHHH--------------Hhhh-cC-----CCccc-hHHHHHHHHH-----------------HHHHHHHHHh---
Confidence            97433321              1111 11     11111 1223333222                 2334456654   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ..++|+||-..||||+++ ..+.|=||..|.+
T Consensus       322 -----~~~IHRDLAARNiLV~~~-~~vKIsDFGLAr~  352 (468)
T KOG0197|consen  322 -----KNYIHRDLAARNILVDED-LVVKISDFGLARL  352 (468)
T ss_pred             -----CCccchhhhhhheeeccC-ceEEEcccccccc
Confidence                 349999999999999974 6889999999984

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.71  E-value=0.04  Score=50.95  Aligned_cols=138  Identities=12%  Similarity=0.070  Sum_probs=77.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhCCCCc-eEEEEEC-Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQGQGP-RLLGRFG-DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~gl~P-~v~~~~~-~~---~v  110 (267)
                      .+..|.+|.-..||+.....    .+.-|.+|.-.-+   ....+--.+|+.+++.|..-.+.. +-+-+.. .+   +|
T Consensus       121 ki~kIGeGTyg~VYkAr~~~----tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  121 KIEKIGEGTYGQVYKARDLE----TGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHhcCcchhheeEeeecc----cCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            46678899999999997432    2445555433221   111222358999999997754321 1112222 22   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++-.-.               ..+   +.-.+.+.     ..++.-|+.|+                 ..-++.   
T Consensus       197 FeYMdhDL~---------------GLl---~~p~vkft-----~~qIKc~mkQL-----------------l~Gl~~---  233 (560)
T KOG0600|consen  197 FEYMDHDLS---------------GLL---SSPGVKFT-----EPQIKCYMKQL-----------------LEGLEY---  233 (560)
T ss_pred             Eecccchhh---------------hhh---cCCCcccC-----hHHHHHHHHHH-----------------HHHHHH---
Confidence            999873211               110   01000000     01233333322                 111122   


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           -+...+.|+|++..|||+|+ .+.+.|=||..|.
T Consensus       234 -----cH~~gvlHRDIK~SNiLidn-~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  234 -----CHSRGVLHRDIKGSNILIDN-NGVLKIADFGLAR  266 (560)
T ss_pred             -----HhhcCeeeccccccceEEcC-CCCEEecccccee
Confidence                 24456999999999999997 4789999999997

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.70  E-value=0.054  Score=50.78  Aligned_cols=30  Identities=20%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+++|.||+|.|+|+-  .|.+.||||.-|.
T Consensus       478 ~~gIVHSDLKPANFLlV--kG~LKLIDFGIA~  507 (677)
T KOG0596|consen  478 QHGIVHSDLKPANFLLV--KGRLKLIDFGIAN  507 (677)
T ss_pred             HhceeecCCCcccEEEE--eeeEEeeeechhc
Confidence            34699999999999987  3689999999774

>PHA02882 putative serine/threonine kinase; Provisional

Probab=95.35  E-value=0.01  Score=51.50  Aligned_cols=29  Identities=31%  Similarity=0.306  Sum_probs=25.4

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++++ +.+.|+||..|.
T Consensus       146 ~iiHrDiKp~Nill~~~-~~~~l~DFGla~  174 (294)
T PHA02882        146 GISHGDIKPENIMVDGN-NRGYIIDYGIAS  174 (294)
T ss_pred             CeecCCCCHHHEEEcCC-CcEEEEEcCCce
Confidence            58999999999999874 678999999874

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.30  E-value=0.14  Score=46.96  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC--cccccChHHHHHHHHHHHhCCCCceEEEEE--C--Ce
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG--VEVFFNRDDEIRTFECMSSQGQGPRLLGRF--G--DG  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~--~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~--~~  108 (267)
                      ...+ ...|..|.+..||+....+.    +..+-+|+.+=+  ...+-...+|.+.+.....=++.+ .+..+  .  -|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~----~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~-~~~sFvv~~~LW  100 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPT----NEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVT-YHCSFVVDSELW  100 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeeccc----CCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcce-EEEEEEecceeE
Confidence            3344 44568899999999876542    467778876432  112222247777776665533322 11112  1  24


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      .||.|+.|..+..       +...           ..|.+-.-.   .+.                    ..+++.++-|
T Consensus       101 vVmpfMa~GS~ld-------Iik~-----------~~~~Gl~E~---~Ia--------------------~iLre~LkaL  139 (516)
T KOG0582|consen  101 VVMPFMAGGSLLD-------IIKT-----------YYPDGLEEA---SIA--------------------TILREVLKAL  139 (516)
T ss_pred             EeehhhcCCcHHH-------HHHH-----------HccccccHH---HHH--------------------HHHHHHHHHH
Confidence            8888887654321       1110           001000000   000                    1122222222


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      . +    -+..+-+|+|+++||||++.+ |.|.|=||..+
T Consensus       140 ~-Y----LH~~G~IHRdvKAgnILi~~d-G~VkLadFgvs  173 (516)
T KOG0582|consen  140 D-Y----LHQNGHIHRDVKAGNILIDSD-GTVKLADFGVS  173 (516)
T ss_pred             H-H----HHhcCceecccccccEEEcCC-CcEEEcCceee
Confidence            1 1    134568999999999999984 78999999544

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=95.28  E-value=0.091  Score=46.31  Aligned_cols=27  Identities=15%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFT  227 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~  227 (267)
                      .++|+|++|.||+++.+ +.+.+.||..
T Consensus       121 ~ivHrDlkp~Nill~~~-~~~~~~~~~~  147 (328)
T cd08226         121 GYIHRNIKASHILISGD-GLVSLSGLSH  147 (328)
T ss_pred             CeecCCCCHHHEEEeCC-CcEEEechHH
Confidence            58999999999999874 6788888753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=95.19  E-value=0.023  Score=49.95  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=26.1

Q ss_pred             CcEEEEccCCCCCCeeeeCCCC--CEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~  229 (267)
                      +..++.|+|++|.|||....++  .|.|-|||.++
T Consensus       193 H~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS  227 (463)
T KOG0607|consen  193 HTKGIAHRDLKPENILCESPNKVSPVKICDFDLGS  227 (463)
T ss_pred             hhcCcccccCCccceeecCCCCcCceeeecccccc
Confidence            3455999999999999875433  47899999875

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=95.14  E-value=0.25  Score=41.99  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCC-ceEEEEECCe----eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQG-PRLLGRFGDG----RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~-P~v~~~~~~~----~v~e  112 (267)
                      .-+.+|..|--...|.-....    .+..+.+|+-.+.... .....|..+-+.|.. |++ |.+.++..+.    +||+
T Consensus        18 ~lvrkiGsGSFGdIy~~~~i~----~ge~VAiK~Es~~a~h-pqL~yEskvY~iL~~-g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   18 KLVRKIGSGSFGDIYLGISIT----SGEEVAIKLESSKAKH-PQLLYESKVYRILQG-GVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             EEEEeecCCchhheeeeeecc----CCceEEEEeecccCCC-cchhHHHHHHHHhcc-CCCCchhhhhccccccceeeee
Confidence            457788878778888876432    4689999997665432 111278888888865 554 7777766432    6666


Q ss_pred             ee
Q 024452          113 FI  114 (267)
Q Consensus       113 ~i  114 (267)
                      .+
T Consensus        92 LL   93 (341)
T KOG1163|consen   92 LL   93 (341)
T ss_pred             cc
Confidence            54

>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]

Probab=95.09  E-value=0.018  Score=50.95  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFT  227 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~  227 (267)
                      ..=+|||||.|-||+.+  +...+||||-
T Consensus       284 l~RvHGDLHLgQVLvt~--g~~~liDFEG  310 (438)
T COG3281         284 LQRVHGDLHLGQVLVTP--GRALLIDFEG  310 (438)
T ss_pred             HHHHhccceehheeeeC--CcEEEEecCC
Confidence            44589999999999985  5799999994

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=95.06  E-value=0.01  Score=56.82  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=26.7

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..++|+|++|.|||++++.+.+.|+||..|.
T Consensus       274 ~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~  304 (566)
T PLN03225        274 TGIVHRDVKPQNIIFSEGSGSFKIIDLGAAA  304 (566)
T ss_pred             CCEEeCcCCHHHEEEeCCCCcEEEEeCCCcc
Confidence            3599999999999998644679999999885

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=94.97  E-value=0.013  Score=50.40  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +.+...+|+|.+|.|||+|+ .|.+.+-||.-++.
T Consensus       208 KeKH~viHRDvKPSNILlDe-~GniKlCDFGIsGr  241 (391)
T KOG0983|consen  208 KEKHGVIHRDVKPSNILLDE-RGNIKLCDFGISGR  241 (391)
T ss_pred             HHhcceeecccCccceEEcc-CCCEEeecccccce
Confidence            45677999999999999997 47899999998874

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=94.88  E-value=0.063  Score=50.77  Aligned_cols=141  Identities=15%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEE-CC--ee
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRF-GD--GR  109 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~~--~~  109 (267)
                      +..--.+|..|-=.+||+-.+       .+.+.||+++-..   +.+.--++|+.+++.=+..++.= -.+.. +.  .+
T Consensus       393 ev~l~~rIGsGsFGtV~Rg~w-------hGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlL-FMG~~~~p~~AI  464 (678)
T KOG0193|consen  393 EVLLGERIGSGSFGTVYRGRW-------HGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILL-FMGACMNPPLAI  464 (678)
T ss_pred             Hhhccceeccccccceeeccc-------ccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhhee-eehhhcCCceee
Confidence            334456678888889999976       3688888875432   11111247777776555433210 00111 11  37


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |..|.+|.++-.                 .+|....    ..++...    ++..              ..+.+-+.+| 
T Consensus       465 iTqwCeGsSLY~-----------------hlHv~et----kfdm~~~----idIA--------------qQiaqGM~YL-  504 (678)
T KOG0193|consen  465 ITQWCEGSSLYT-----------------HLHVQET----KFDMNTT----IDIA--------------QQIAQGMDYL-  504 (678)
T ss_pred             eehhccCchhhh-----------------hccchhh----hhhHHHH----HHHH--------------HHHHHhhhhh-
Confidence            899999977642                 1222211    1111111    1110              1122222333 


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                             +...++|.||+..||+++++ ..|+|=||..++.--
T Consensus       505 -------HAK~IIHrDLKSnNIFl~~~-~kVkIgDFGLatvk~  539 (678)
T KOG0193|consen  505 -------HAKNIIHRDLKSNNIFLHED-LKVKIGDFGLATVKT  539 (678)
T ss_pred             -------hhhhhhhhhccccceEEccC-CcEEEecccceeeee
Confidence                   22348999999999999974 789999999987643

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=94.73  E-value=0.023  Score=48.73  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=27.5

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .-.+|+|++|.|||++. .|.+.|-||.-|+.
T Consensus       187 lkiIHRDvKPSNILldr-~G~vKLCDFGIcGq  217 (361)
T KOG1006|consen  187 LKIIHRDVKPSNILLDR-HGDVKLCDFGICGQ  217 (361)
T ss_pred             hhhhhccCChhheEEec-CCCEeeecccchHh
Confidence            44899999999999997 47899999999986

>PRK10345 hypothetical protein; Provisional

Probab=94.46  E-value=0.033  Score=46.37  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccChHHHHHHHHHHHhCCC----CceEEEEEC
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFNRDDEIRTFECMSSQGQ----GPRLLGRFG  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~dr~~E~~~~~~l~~~gl----~P~v~~~~~  106 (267)
                      ...+|..|....+|.  .+.    +... ++|+...... ..-+..+|+.+++.+...+.    -+++++...
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~----~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~e   71 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPE----DAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVE   71 (210)
T ss_pred             CcceecCCCceEEEE--CCC----CcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEE
Confidence            346788888889995  322    2334 5776543311 11122589999999976442    366776653

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=94.43  E-value=0.016  Score=49.63  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       144 gi~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  172 (283)
T cd05091         144 HVVHKDLATRNVLVFDK-LNVKISDLGLFR  172 (283)
T ss_pred             CccccccchhheEecCC-CceEeccccccc
Confidence            58999999999999874 679999999654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.35  E-value=0.043  Score=51.88  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+-++|+|++++||+++++.|.|.|=|...|+
T Consensus       162 ~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  162 QDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             CCCCccccccccceEEEcCCcCceeecchhHHH
Confidence            345689999999999999888899999998775

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.34  E-value=0.42  Score=45.24  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=77.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccCh-HHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNR-DDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -..|..|.-..+|.++...    .+..|.+|+-.+..   ...-++ .+|+++.+.|+...+ -+.+.++++.    ++.
T Consensus        23 g~~LGkGgFA~cYe~~~~~----tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnI-V~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   23 GRFLGKGGFARCYEARDLD----TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNI-VQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             eeeeccCcceEEEEEEEcC----CCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcE-EeeeeEeecCCceEEEE
Confidence            3445677779999998532    35778888754321   011111 479999988877432 2345566654    555


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      |..+-+              .+    .+||+...+.. ++.    .+.|+.|+                 ..-+.+|   
T Consensus        98 ELC~~~--------------sL----~el~Krrk~lt-EpE----ary~l~QI-----------------v~GlkYL---  134 (592)
T KOG0575|consen   98 ELCHRG--------------SL----MELLKRRKPLT-EPE----ARYFLRQI-----------------VEGLKYL---  134 (592)
T ss_pred             EecCCc--------------cH----HHHHHhcCCCC-cHH----HHHHHHHH-----------------HHHHHHH---
Confidence            555421              22    23333222111 111    22233322                 1112222   


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           +..+++|+|++.||++++++ -.|.|=||..|+.
T Consensus       135 -----H~~~IiHRDLKLGNlfL~~~-~~VKIgDFGLAt~  167 (592)
T KOG0575|consen  135 -----HSLGIIHRDLKLGNLFLNEN-MNVKIGDFGLATQ  167 (592)
T ss_pred             -----HhcCceecccchhheeecCc-CcEEecccceeee
Confidence                 33459999999999999974 5799999998875

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=94.27  E-value=0.27  Score=46.19  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=77.6

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhCCCCceEEEEE-CCe--eEEEeecC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQGQGPRLLGRF-GDG--RVEEFIHA  116 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~~~--~v~e~i~G  116 (267)
                      +..|.-..||--....    .++.+.+|+-.+-   ++..-.-++|+++++.+..-|++---..+. ++.  .|||-+.|
T Consensus       572 LGSGQFG~VYgg~hRk----tGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  572 LGSGQFGTVYGGKHRK----TGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             ccCCcceeeecceecc----cCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc
Confidence            4566667777765443    3567777765432   111112258999998887766543222211 222  67888888


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      ..+.-           +   |      +....   .+-+++-+|+-                ..+...++.|        
T Consensus       648 DMLEM-----------I---L------SsEkg---RL~er~TkFlv----------------tQIL~ALr~L--------  680 (888)
T KOG4236|consen  648 DMLEM-----------I---L------SSEKG---RLPERITKFLV----------------TQILVALRYL--------  680 (888)
T ss_pred             hHHHH-----------H---H------Hhhcc---cchHHHHHHHH----------------HHHHHHHHHh--------
Confidence            65531           0   0      00001   11123333321                1111222222        


Q ss_pred             CcEEEEccCCCCCCeeeeCCC--CCEEEEeecccCc-chHhHH
Q 024452          197 QEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFLQ-NMLNFK  236 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~~-~~~~fD  236 (267)
                      +-..++|+|++|.|||.....  .++.|-||.||.+ |--.|-
T Consensus       681 H~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR  723 (888)
T KOG4236|consen  681 HFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR  723 (888)
T ss_pred             hhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhh
Confidence            234589999999999997532  3689999999985 555554

>PHA03210 serine/threonine kinase US3; Provisional

Probab=94.26  E-value=0.023  Score=53.65  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       287 gIiHrDLKP~NILl~~~-~~vkL~DFGla~  315 (501)
T PHA03210        287 KLIHRDIKLENIFLNCD-GKIVLGDFGTAM  315 (501)
T ss_pred             CeecCCCCHHHEEECCC-CCEEEEeCCCce
Confidence            59999999999999874 689999998874

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=94.19  E-value=0.022  Score=49.02  Aligned_cols=31  Identities=29%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..++|+|++|.|||.+++ ..+.|-||.||..
T Consensus       142 ~~IVHRDLKpENILlddn-~~i~isDFGFa~~  172 (411)
T KOG0599|consen  142 RNIVHRDLKPENILLDDN-MNIKISDFGFACQ  172 (411)
T ss_pred             hhhhhcccChhheeeccc-cceEEeccceeec
Confidence            348999999999999974 7899999999864

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=94.15  E-value=0.039  Score=46.79  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=27.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      -+.|+|++|+||+..+ .+..+++||.-+...+
T Consensus       149 ~yAH~DiKP~NILls~-~~~~vl~D~GS~~~a~  180 (302)
T KOG2345|consen  149 PYAHRDIKPANILLSD-SGLPVLMDLGSATQAP  180 (302)
T ss_pred             cccccCCCcceeEecC-CCceEEEeccCccccc
Confidence            5899999999999987 4789999999886543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=93.95  E-value=0.052  Score=48.98  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -...+++|+|++|+|++++...+.-.||||..|..
T Consensus       148 ~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  148 LHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             hhccCccccCCCccccccccccCCceEEechhHHH
Confidence            35678999999999999998666789999999873

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=93.88  E-value=0.037  Score=55.58  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             CcEEEEccCCCCCCeeeeC------CCCCEEEEeeccc
Q 024452          197 QEIGFCHNDLQYGNIMIDE------ETSSITIIVSFTF  228 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~------~~~~v~lIDwE~a  228 (267)
                      +...+||||++|+|+|+..      +...+.||||.++
T Consensus       811 H~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~s  848 (974)
T KOG1166|consen  811 HAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRS  848 (974)
T ss_pred             HhcceecccCCcceeEeecccCCCCcccceEEEecccc
Confidence            4456999999999999864      1235889999977

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=93.85  E-value=0.42  Score=42.48  Aligned_cols=32  Identities=22%  Similarity=0.153  Sum_probs=25.6

Q ss_pred             cEEEEccCCCCCCeeeeCC----CCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEE----TSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~----~~~v~lIDwE~a~  229 (267)
                      ..-|+-+|++|+|+|+...    ...+.+|||..|.
T Consensus       142 ~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen  142 EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             hcceeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            3458999999999999642    2457899999885

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.82  E-value=0.12  Score=47.20  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ....++.+.|+|++..||||..+ +.-.|=|...|-.
T Consensus       330 GTqgKPaIAHRDlKSKNILVKkn-~~C~IADLGLAv~  365 (513)
T KOG2052|consen  330 GTQGKPAIAHRDLKSKNILVKKN-GTCCIADLGLAVR  365 (513)
T ss_pred             cCCCCchhhccccccccEEEccC-CcEEEeeceeeEE
Confidence            34678899999999999999874 6678889888754

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.60  E-value=0.035  Score=56.34  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +..+++|+|++|.||+++++ +.|.|.||..|..
T Consensus       714 H~~giIHRDLKP~NIFLd~~-~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  714 HDQGIIHRDLKPRNIFLDSR-NSVKIGDFGLATD  746 (1351)
T ss_pred             HhCceeeccCCcceeEEcCC-CCeeecccccchh
Confidence            45669999999999999974 6899999999975

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=93.53  E-value=0.033  Score=48.99  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=26.3

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .++|+|++|+||+++++ +.+.|+||..+..
T Consensus       123 gi~H~dlkp~nili~~~-~~~~L~dfg~~~~  152 (330)
T cd07834         123 NVIHRDLKPSNILVNSN-CDLKICDFGLARG  152 (330)
T ss_pred             CeecCCCCHHHEEEcCC-CCEEEcccCceEe
Confidence            48999999999999974 7899999987764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=93.11  E-value=0.046  Score=48.44  Aligned_cols=35  Identities=14%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      -+....+|+|++|+|++++.+ -.+.+-||..|..-
T Consensus       141 iHSAnViHRDLKPsNll~n~~-c~lKI~DFGLAR~~  175 (359)
T KOG0660|consen  141 IHSANVIHRDLKPSNLLLNAD-CDLKICDFGLARYL  175 (359)
T ss_pred             hhcccccccccchhheeeccC-CCEEeccccceeec
Confidence            355679999999999999974 67899999999864

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=93.05  E-value=0.037  Score=46.35  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=24.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      .++|+|++|.||+++.+ +.+.++||..+
T Consensus       105 ~i~H~dlkp~Nil~~~~-~~~~l~df~~~  132 (237)
T cd05576         105 GIVCRDLNPNNILLDDR-GHIQLTYFSRW  132 (237)
T ss_pred             CeeccCCCHHHEEEcCC-CCEEEecccch
Confidence            59999999999999974 67999999854

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=92.69  E-value=0.066  Score=49.98  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.5

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ...++|.|++|+||||++....+.|.||.-|+.
T Consensus       554 ~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~  586 (752)
T KOG0670|consen  554 KCGVLHADIKPDNILVNESKNILKLCDFGSASF  586 (752)
T ss_pred             hcCeeecccCccceEeccCcceeeeccCccccc
Confidence            456999999999999997544578999998874

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=92.45  E-value=0.083  Score=44.84  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=25.2

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++++ +.+.++||..+.
T Consensus       133 ~i~H~dikp~nili~~~-~~~kl~dfg~~~  161 (273)
T cd05074         133 NFIHRDLAARNCMLNEN-MTVCVADFGLSK  161 (273)
T ss_pred             CEeecccchhhEEEcCC-CCEEECcccccc
Confidence            49999999999999864 678999998765

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.36  E-value=0.048  Score=51.68  Aligned_cols=43  Identities=16%  Similarity=0.049  Sum_probs=32.3

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhh
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKI  242 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~  242 (267)
                      ...+|+|++.||||+.+. +.|.+-||.-|++-.++--...+-|
T Consensus       145 ~~~IHRDiKAGNILLse~-g~VKLaDFGSAsi~~PAnsFvGTPy  187 (948)
T KOG0577|consen  145 HNRIHRDIKAGNILLSEP-GLVKLADFGSASIMAPANSFVGTPY  187 (948)
T ss_pred             hhHHhhhccccceEecCC-CeeeeccccchhhcCchhcccCCcc
Confidence            458999999999999974 7899999999886544443333333

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=92.18  E-value=0.09  Score=45.07  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC-cccccCh--HHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG-VEVFFNR--DDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~-~~~~~dr--~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      +.+.+.+|.-..||+..-..    .++.+.+|.-.-+ .+.-+++  -+|+..++.+.... .-+++..++  ++  +|+
T Consensus         6 ~~~~lGEG~~gvVyka~d~~----t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~n-Ii~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    6 KLEKLGEGTYGVVYKARDTE----TGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPN-IIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             hhhhhcCcceEEEEEEEecC----CCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcc-hhhhhhhccCCCceEEEE
Confidence            45567899999999987443    3466666533222 2223333  58999888887432 223333443  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++-. +.       .+++          .     ...+-.-..+..|+-...                 +-+..+   
T Consensus        81 Efm~td-Le-------~vIk----------d-----~~i~l~pa~iK~y~~m~L-----------------kGl~y~---  117 (318)
T KOG0659|consen   81 EFMPTD-LE-------VVIK----------D-----KNIILSPADIKSYMLMTL-----------------KGLAYC---  117 (318)
T ss_pred             Eecccc-HH-------HHhc----------c-----cccccCHHHHHHHHHHHH-----------------HHHHHH---
Confidence            998731 10       0111          0     000001123444443211                 111222   


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           +..-+.|+|++|.|+|++++ +.+.+=||..|..
T Consensus       118 -----H~~~IlHRDlKPnNLLis~~-g~lKiADFGLAr~  150 (318)
T KOG0659|consen  118 -----HSKWILHRDLKPNNLLISSD-GQLKIADFGLARF  150 (318)
T ss_pred             -----HhhhhhcccCCccceEEcCC-CcEEeecccchhc
Confidence                 22337899999999999984 7899999998864

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=91.88  E-value=0.11  Score=49.01  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      .++|+|++|.|||++.+ +.+.|+||..+
T Consensus       329 ~ivHrDLKp~NILl~~~-~~~kL~DFGla  356 (507)
T PLN03224        329 GIVHRDIKPENLLVTVD-GQVKIIDFGAA  356 (507)
T ss_pred             CeecCCCchHhEEECCC-CcEEEEeCcCc
Confidence            58999999999999874 67999999876

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=91.61  E-value=0.071  Score=47.40  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||++++ ++.+.|+||..+.
T Consensus       138 gi~H~dlkp~Nill~~-~~~~kL~dfg~~~  166 (343)
T cd07851         138 GIIHRDLKPSNIAVNE-DCELKILDFGLAR  166 (343)
T ss_pred             CeecCCCCHHHeEECC-CCCEEEccccccc
Confidence            4899999999999987 4789999998775

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=91.55  E-value=0.14  Score=45.30  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=78.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC------C--e-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG------D--G-  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~------~--~-  108 (267)
                      ....+..|-...||..+...    .+..+-+|........ .-.-++|+.++..+.    .|.++....      +  - 
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~----~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~----~p~IV~~~G~~~~~~~~~~~   92 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKK----TGELMAVKSVELEDSPTSESLEREIRILSRLN----HPNIVQYYGSSSSRENDEYN   92 (313)
T ss_pred             hhccccCccceEEEEEEecC----CCcceeeeeeecccchhHHHHHHHHHHHHhCC----CCCEEeeCCccccccCeeeE
Confidence            44566788889999998643    2356666654332111 111257888888777    355544322      1  1 


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +++||++|..+..              .+.+.-. ..     +  ...+..|..++                 .+-+.+|
T Consensus        93 i~mEy~~~GsL~~--------------~~~~~g~-~l-----~--E~~v~~ytr~i-----------------L~GL~yl  133 (313)
T KOG0198|consen   93 IFMEYAPGGSLSD--------------LIKRYGG-KL-----P--EPLVRRYTRQI-----------------LEGLAYL  133 (313)
T ss_pred             eeeeccCCCcHHH--------------HHHHcCC-CC-----C--HHHHHHHHHHH-----------------HHHHHHH
Confidence            6789999876643              1111111 01     1  12233443322                 1112222


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              +...++|+|+++.|||+++.++.+.|-||..+.
T Consensus       134 --------Hs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen  134 --------HSKGIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             --------HhCCEeccCcccceEEEeCCCCeEEeccCcccc
Confidence                    245699999999999999733679999999665

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.29  E-value=0.098  Score=52.93  Aligned_cols=32  Identities=22%  Similarity=0.486  Sum_probs=27.8

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..+++|+|++|+|||++-. |-+.|=||..|.
T Consensus       192 H~mgyVHRDiKPDNvLld~~-GHikLADFGsCl  223 (1317)
T KOG0612|consen  192 HSMGYVHRDIKPDNVLLDKS-GHIKLADFGSCL  223 (1317)
T ss_pred             HhccceeccCCcceeEeccc-CcEeeccchhHH
Confidence            45679999999999999975 679999999884

>PLN00181 protein SPA1-RELATED; Provisional

Probab=91.29  E-value=0.18  Score=50.34  Aligned_cols=31  Identities=10%  Similarity=0.162  Sum_probs=24.2

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ...++|+|++|.|||++.. +.+.++||..|.
T Consensus        98 ~~gIvHrDlKP~NiLl~~~-~~~k~~d~~~~~  128 (793)
T PLN00181         98 SQGIVVHNVRPSCFVMSSF-NHVSFIESASCS  128 (793)
T ss_pred             hCCeeeccCCchhEEEccc-CcEEEeeccccC
Confidence            4569999999999999763 567777776553

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.15  E-value=0.68  Score=41.36  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhCCC-CceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHH
Q 024452           83 DDEIRTFECMSSQGQ-GPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWV  161 (267)
Q Consensus        83 ~~E~~~~~~l~~~gl-~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~  161 (267)
                      ++|..-+..+.++|+ +|.|+-.-..-+||.||-...+....+.+-.                      .+- +.++.-+
T Consensus       333 EkEmhNL~RMq~~GlpcP~vV~lkkhvLVMsFiGd~~~aAPkLK~v~----------------------l~d-~E~~~aY  389 (531)
T KOG2269|consen  333 EKEMHNLSRMQKHGLPCPQVVKLKKHVLVMSFIGDQGLAAPKLKNVE----------------------LTD-DERRNAY  389 (531)
T ss_pred             HHHHHHHHHHHhcCCCCCceeeeecceEEEEeecCCCCCCccccccc----------------------cCh-HHHHHHH
Confidence            456667778888997 6999988877799999965544443333210                      000 0011111


Q ss_pred             HHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc--chHhHH
Q 024452          162 SVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ--NMLNFK  236 (267)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~--~~~~fD  236 (267)
                                       ......+.+|.+       ...|+|.|+.--|+|+.+  +++++||---+.-  +|++..
T Consensus       390 -----------------~q~~~~M~~lY~-------Ec~LVHADlSEyN~Lw~~--gKvw~IDVsQsvep~HP~~Le  440 (531)
T KOG2269|consen  390 -----------------DQVQSIMCRLYK-------ECLLVHADLSEYNLLWTP--GKVWVIDVSQSVEPSHPRSLE  440 (531)
T ss_pred             -----------------HHHHHHHHHHHH-------hhheeecchhhhhheecC--CceEEEechhccCCCCcchhH
Confidence                             112222233332       245999999999999996  4899999765532  444443

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.01  E-value=0.13  Score=44.41  Aligned_cols=35  Identities=14%  Similarity=0.151  Sum_probs=28.5

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      ....+.|+|++|||+||+.+ -.+.|.||..|....
T Consensus       173 HsA~ILHRDIKPGNLLVNSN-CvLKICDFGLARvee  207 (449)
T KOG0664|consen  173 HTANILHRDIKPGNLLVNSN-CILKICDFGLARTWD  207 (449)
T ss_pred             hhcchhhccCCCccEEeccC-ceEEecccccccccc
Confidence            34568999999999999963 467899999998643

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=90.95  E-value=0.14  Score=47.30  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -..++|+|++|.|+|++++ +.+.|=||.-|.
T Consensus       228 ~QgiiHRDIKPsNLLl~~~-g~VKIsDFGVs~  258 (576)
T KOG0585|consen  228 YQGIIHRDIKPSNLLLSSD-GTVKISDFGVSN  258 (576)
T ss_pred             hcCeeccccchhheEEcCC-CcEEeeccceee
Confidence            3569999999999999985 789999998765

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=90.43  E-value=0.21  Score=45.11  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch----HhHH-----------------HHhhhhhhee-eeccCC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM----LNFK-----------------RACTKILLIL-TFSVNS  252 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~----~~fD-----------------~A~~~~~~~~-~~~~~~  252 (267)
                      ....+-|-|+|++-+|||++  .|.|.||||-.|...+    ..|+                 +--.+-.|.+ -.+.+.
T Consensus       337 lekkf~fehrnlt~~niLId--~GnvtLIDfklsRl~~~q~~isy~rldhp~lF~G~dd~QFeIYrlMr~l~~g~wa~F~  414 (488)
T COG5072         337 LEKKFPFEHRNLTLDNILID--EGNVTLIDFKLSRLSYSQGIISYNRLDHPDLFNGVDDYQFEIYRLMRRLLKGRWAQFE  414 (488)
T ss_pred             hhhcCCcccccccccceeee--cCceEEEEeeeeecccCCceeeccccCchhhhcCccceeeeHHHHHHHHhcCcHHhcc
Confidence            35667799999999999999  3789999999887532    1121                 1111111222 234778


Q ss_pred             chhHhHHHHHHhhc
Q 024452          253 PMVCMRWLRILCLQ  266 (267)
Q Consensus       253 ~~~~~~~~~~~~~~  266 (267)
                      ++.-+.||+-|.-|
T Consensus       415 P~TNvlWL~yLs~~  428 (488)
T COG5072         415 PITNVLWLYYLSHQ  428 (488)
T ss_pred             cchhhHHHHHHHHH
Confidence            88888898877654

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=90.23  E-value=0.13  Score=45.11  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHh
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLN  234 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~  234 (267)
                      ...+++|+||+|.||++..+ ..+.|.||.+|.-....
T Consensus       135 hs~~IihRdLkPsnivv~~~-~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen  135 HSAGIIHRDLKPSNIVVNSD-CTLKILDFGLARTEDTD  171 (369)
T ss_pred             HhcceeecccCcccceecch-hheeeccchhhcccCcc
Confidence            55779999999999999864 67899999999754433

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.73  E-value=1.7  Score=42.48  Aligned_cols=137  Identities=14%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEE-EECCe---eEEEeecCC
Q 024452           43 LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLG-RFGDG---RVEEFIHAR  117 (267)
Q Consensus        43 l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~-~~~~~---~v~e~i~G~  117 (267)
                      +..|....||...-..    .+.+..+|--....+.... ...|++..+.|...+++- -++ ..++|   +.||-+||.
T Consensus       583 LGKGTYG~VYA~RD~~----tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVr-YLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  583 LGKGTYGTVYAARDMD----TQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVR-YLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             eecCceeEEEeecccc----ceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHH-HhhccCCCCeEEEEeecCCCC
Confidence            4566677777765322    2445555533221122222 246788888887765432 222 34566   568888887


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCC
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQ  197 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  197 (267)
                      .++.       ..+          +   ..++-.+-..++.-|-.++                 .+-+.+|        +
T Consensus       658 SLSs-------LLr----------s---kWGPlKDNEstm~fYtkQI-----------------LeGLkYL--------H  692 (1226)
T KOG4279|consen  658 SLSS-------LLR----------S---KWGPLKDNESTMNFYTKQI-----------------LEGLKYL--------H  692 (1226)
T ss_pred             cHHH-------HHH----------h---ccCCCccchhHHHHHHHHH-----------------HHHhhhh--------h
Confidence            7652       111          0   0111001112333332222                 1222233        3


Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..-++|+|++-+|||++--.|.+.|-||..|.
T Consensus       693 en~IVHRDIKGDNVLvNTySGvlKISDFGTsK  724 (1226)
T KOG4279|consen  693 ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSK  724 (1226)
T ss_pred             hcceeeccccCCcEEEeeccceEEecccccch
Confidence            34589999999999998655678899998763

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=89.33  E-value=1.5  Score=35.81  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhCCCCceEEEEECCeeEEEeecC-CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHH
Q 024452           84 DEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHA-RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVS  162 (267)
Q Consensus        84 ~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G-~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~  162 (267)
                      .|.-+++.+......|++++...+-.+.|+++. ...+.                   +. ....-.. ..      |..
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~CG~~~v~E~~~~~~~~~~-------------------~~-~l~~~~~-~~------w~~   60 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSCGRFYVVEYVGAGSLYGI-------------------YR-PLSQFLQ-SP------WEQ   60 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeECCCEEEEEeecCcccccc-------------------cc-ccccccc-cC------HHH
Confidence            688999999888888999999877789999974 33221                   00 0000000 01      211


Q ss_pred             HHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchH
Q 024452          163 VAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNML  233 (267)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~  233 (267)
                      .+ ++          .-.+.+.++.+..    ..... +--.|++++|+-+++ ++.+.+||-|.+..-..
T Consensus        61 R~-~i----------A~~lL~~l~~l~~----~~~~~-~~lcDv~~~nfgv~~-~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   61 RA-KI----------ALQLLELLEELDH----GPLGF-FYLCDVSPDNFGVND-DGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             HH-HH----------HHHHHHHHHHHhc----CCCCc-EEEeecchHHeEEeC-CCcEEEEechhcchhHH
Confidence            11 00          0112233333332    23334 777899999999996 46899999998876443

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.77  E-value=0.47  Score=43.86  Aligned_cols=32  Identities=31%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..+|-|+|++|.|||+.. ...+.|=||..|.
T Consensus       127 Hk~GfFHRDlKPENiLi~~-~~~iKiaDFGLAR  158 (538)
T KOG0661|consen  127 HKHGFFHRDLKPENILISG-NDVIKIADFGLAR  158 (538)
T ss_pred             HhcCcccccCChhheEecc-cceeEeccccccc
Confidence            5678999999999999985 3578999999885

>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function

Probab=88.47  E-value=0.38  Score=43.84  Aligned_cols=43  Identities=9%  Similarity=-0.056  Sum_probs=34.4

Q ss_pred             CCCCcEEEEccCCCCCCeeeeC-CCCCEE--EEeecccCcchHhHH
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDE-ETSSIT--IIVSFTFLQNMLNFK  236 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~-~~~~v~--lIDwE~a~~~~~~fD  236 (267)
                      ....+.++++||+|.+|+=.-. .++.+.  |=|||.+.+|+..||
T Consensus        38 ~~~~~~v~icGD~Hl~NFG~~~~~~~~~vFdiNDFDEa~~gp~~wD   83 (385)
T PF10009_consen   38 PPSGPPVWICGDAHLENFGAFASPEGRVVFDINDFDEALPGPFEWD   83 (385)
T ss_pred             CCCCCceEEeccchhhccCcccCCCCCEEecCCCCCcCCcCChHHH
Confidence            3577899999999999996533 234433  779999999999999

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=88.44  E-value=0.29  Score=43.42  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=27.9

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..-++|+|+++.|+|+.. .|.+.|-||..|.
T Consensus       194 H~~wilHRDLK~SNLLm~~-~G~lKiaDFGLAR  225 (419)
T KOG0663|consen  194 HDNWILHRDLKTSNLLLSH-KGILKIADFGLAR  225 (419)
T ss_pred             hhceeEecccchhheeecc-CCcEEecccchhh
Confidence            4456899999999999987 4789999999986

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=88.41  E-value=0.28  Score=42.61  Aligned_cols=31  Identities=13%  Similarity=-0.018  Sum_probs=26.9

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -...|+|++|+||+++.+ +.+.|=||..+..
T Consensus       147 ~~VmHRDIKPaNIFl~~~-gvvKLGDfGL~r~  177 (375)
T KOG0591|consen  147 GTVMHRDIKPANIFLTAN-GVVKLGDFGLGRF  177 (375)
T ss_pred             cceeeccCcchheEEcCC-CceeeccchhHhH
Confidence            458999999999999974 7899999998863

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=88.27  E-value=2.6  Score=41.23  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL  119 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l  119 (267)
                      .|..|.-..|++-.+.... +..-.+.||+.+.+...  +-|-.+|+.+|..|.... .-++|+..         =+.++
T Consensus       117 ~LG~GsFgvV~rg~Wt~ps-gk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~h-liRLyGvV---------l~qp~  185 (1039)
T KOG0199|consen  117 LLGEGSFGVVKRGTWTQPS-GKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPH-LIRLYGVV---------LDQPA  185 (1039)
T ss_pred             HhcCcceeeEeeccccCCC-CcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcc-eeEEeeee---------ccchh
Confidence            3466766777777765421 23456678888776532  223347888776665421 12233321         11111


Q ss_pred             CcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcE
Q 024452          120 SAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEI  199 (267)
Q Consensus       120 ~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~  199 (267)
                      .-  +.   -...+|.+|.+||+...+    .-+...+-+|..++                 ...+.+|+.        .
T Consensus       186 mM--V~---ELaplGSLldrLrka~~~----~llv~~Lcdya~Qi-----------------A~aM~YLes--------k  231 (1039)
T KOG0199|consen  186 MM--VF---ELAPLGSLLDRLRKAKKA----ILLVSRLCDYAMQI-----------------AKAMQYLES--------K  231 (1039)
T ss_pred             hH--Hh---hhcccchHHHHHhhcccc----ceeHHHHHHHHHHH-----------------HHHHHHHhh--------h
Confidence            10  00   134578889999983321    12334455554432                 334445543        3


Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .|+|+|+-..|+++-. .+.|.|-||....
T Consensus       232 rlvHRDLAARNlllas-prtVKI~DFGLmR  260 (1039)
T KOG0199|consen  232 RLVHRDLAARNLLLAS-PRTVKICDFGLMR  260 (1039)
T ss_pred             hhhhhhhhhhhheecc-cceeeeeccccee
Confidence            4999999999999976 3678999999775

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=88.27  E-value=1.4  Score=40.62  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=81.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC----Ce----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG----DG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~~----~v  110 (267)
                      .++.+..|.-...+.+....    +...|++|.-.-.....-.|....+-+..+++ -..|-++.+-+    ++    ++
T Consensus         8 ~~~~iG~GafG~a~lvrhk~----~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~-~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    8 VLRQVGRGAFGSALLVRHKS----DDKLYVLKKINLEKLTEPERRSAIQEMDLLSK-LLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             hhhhcCccccchhhhhhhcc----CCceEEEEEEeccccCchhhHHHHHHHHHHHh-ccCCCeeeeccchhcCCceEEEE
Confidence            34556677777777776432    45788887543221110111122223334444 23477766532    22    78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|.+|..+..              .+.+-.....       ..+++-+|+-++                 ...++.+- 
T Consensus        83 m~Y~eGg~l~~--------------~i~~~k~~~f-------~E~~i~~~~~Q~-----------------~~av~ylH-  123 (426)
T KOG0589|consen   83 MEYCEGGDLAQ--------------LIKEQKGVLF-------PEERILKWFVQI-----------------LLAVNYLH-  123 (426)
T ss_pred             EeecCCCCHHH--------------HHHHHhhccc-------cHHHHHHHHHHH-----------------HHHHHHHH-
Confidence            99999976542              1111111111       123455565432                 11223332 


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHh
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                             ...+.|+|+++.||+.+.+ +.|.|=||+-|..-....+.|+
T Consensus       124 -------~~~iLHRDlK~~Nifltk~-~~VkLgDfGlaK~l~~~~~~a~  164 (426)
T KOG0589|consen  124 -------ENRVLHRDLKCANIFLTKD-KKVKLGDFGLAKILNPEDSLAS  164 (426)
T ss_pred             -------hhhhhcccchhhhhhcccc-CceeecchhhhhhcCCchhhhh
Confidence                   3458899999999999975 5689999999987444434444

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.24  E-value=0.27  Score=47.23  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=28.6

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccCcchH
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNML  233 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~  233 (267)
                      ..++|+||+.||||+.-+ |.+.|-||.-++-+-.
T Consensus       149 ~~iIHRDLKAGNiL~Tld-GdirLADFGVSAKn~~  182 (1187)
T KOG0579|consen  149 QNIIHRDLKAGNILLTLD-GDIRLADFGVSAKNKS  182 (1187)
T ss_pred             cchhhhhccccceEEEec-CcEeeecccccccchh
Confidence            458999999999999975 7899999998875543

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=88.22  E-value=0.23  Score=46.93  Aligned_cols=39  Identities=23%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc-chHhHH
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ-NMLNFK  236 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~-~~~~fD  236 (267)
                      +...+||+||+..|+|++.+ ..+.|-||+++.. .+-.++
T Consensus       172 H~k~ivHrdLk~eNilL~~~-mnikIaDfgfS~~~~~~~~l  211 (596)
T KOG0586|consen  172 HSKNIVHRDLKAENILLDEN-MNIKIADFGFSTFFDYGLML  211 (596)
T ss_pred             hhcceeccccchhhcccccc-cceeeeccccceeecccccc
Confidence            44669999999999999974 5689999999974 444443

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=85.99  E-value=0.41  Score=40.92  Aligned_cols=29  Identities=14%  Similarity=0.105  Sum_probs=22.3

Q ss_pred             EEEccCCCCCCeeeeCCC------CCEEEEeeccc
Q 024452          200 GFCHNDLQYGNIMIDEET------SSITIIVSFTF  228 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~------~~v~lIDwE~a  228 (267)
                      .++|+|++|.||+++..+      ..+.+.||..+
T Consensus       137 ~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~  171 (274)
T cd05076         137 NLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVS  171 (274)
T ss_pred             CccCCCCCcccEEEeccCcccCccceeeecCCccc
Confidence            489999999999997521      13678898755

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=85.65  E-value=0.46  Score=41.51  Aligned_cols=30  Identities=17%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+++|||+++.|++++++ |.+.|=||+...
T Consensus       164 ~GlVHgdi~~~nfll~~~-G~v~Lg~F~~~~  193 (288)
T PF14531_consen  164 YGLVHGDIKPENFLLDQD-GGVFLGDFSSLV  193 (288)
T ss_dssp             TTEEEST-SGGGEEE-TT-S-EEE--GGGEE
T ss_pred             cceEecccceeeEEEcCC-CCEEEcChHHHe
Confidence            349999999999999985 789999987653

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=85.49  E-value=1.7  Score=35.39  Aligned_cols=30  Identities=17%  Similarity=0.167  Sum_probs=25.4

Q ss_pred             EEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          199 IGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       199 ~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ....|+|++|.|++++.+ +.+.+-||..|.
T Consensus       120 hnvlhrdlkpqnllin~n-gelkladfglar  149 (292)
T KOG0662|consen  120 HNVLHRDLKPQNLLINRN-GELKLADFGLAR  149 (292)
T ss_pred             hhhhhccCCcceEEeccC-CcEEecccchhh
Confidence            446689999999999974 789999999874

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=85.04  E-value=0.96  Score=40.74  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             CcEEEEccCCCCCCeeeeCC-------------------CCCEEEEeecccCcch
Q 024452          197 QEIGFCHNDLQYGNIMIDEE-------------------TSSITIIVSFTFLQNM  232 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~-------------------~~~v~lIDwE~a~~~~  232 (267)
                      ....++|-||+|.||++-++                   .-.+.+|||.-|.+..
T Consensus       209 h~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~  263 (415)
T KOG0671|consen  209 HDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDH  263 (415)
T ss_pred             HhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceec
Confidence            56779999999999998652                   1236799999887643

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=84.50  E-value=0.45  Score=44.57  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +...++-+|++|.|+|.+. .|.+.|+||.||.
T Consensus       537 H~k~iIYRDLKPENllLd~-~Gy~KLVDFGFAK  568 (732)
T KOG0614|consen  537 HRKGIIYRDLKPENLLLDN-RGYLKLVDFGFAK  568 (732)
T ss_pred             HhcCceeccCChhheeecc-CCceEEeehhhHH
Confidence            4456999999999999997 4789999998874

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=83.26  E-value=2.2  Score=41.26  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +...+++|++.        -|+|+||-..|-||.++ +.|.+-||..+..
T Consensus       374 IsSaMeYLEkk--------nFIHRDLAARNCLVgEn-hiVKvADFGLsRl  414 (1157)
T KOG4278|consen  374 ISSAMEYLEKK--------NFIHRDLAARNCLVGEN-HIVKVADFGLSRL  414 (1157)
T ss_pred             HHHHHHHHHHh--------hhhhhhhhhhhcccccc-ceEEeeccchhhh
Confidence            34455666643        39999999999999874 7889999998753

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=83.13  E-value=0.82  Score=40.34  Aligned_cols=147  Identities=11%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhCCCC--ceEEEEECC--eeEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQGQG--PRLLGRFGD--GRVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~gl~--P~v~~~~~~--~~v~e  112 (267)
                      +..|..|....||+.-..++++.....|.+|.+...   +....+.-+|...++.+..-.+.  -+|+...+.  +++++
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fd  108 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFD  108 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEeh
Confidence            445788999999998433222100124556654322   11111224899999998876653  233332221  26777


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |-|-.           .+     .+-++|+.+....-.+...+.+                    +..+..-+.+|-+  
T Consensus       109 YAEhD-----------L~-----~II~fHr~~~~~~lp~~mvKsi--------------------lwQil~Gv~YLH~--  150 (438)
T KOG0666|consen  109 YAEHD-----------LW-----HIIKFHRASKAKQLPRSMVKSI--------------------LWQILDGVHYLHS--  150 (438)
T ss_pred             hhhhh-----------HH-----HHHHHhccchhccCCHHHHHHH--------------------HHHHHhhhHHHhh--
Confidence            76521           11     1335677654211011111111                    0112222233322  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC---CCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE---TSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~---~~~v~lIDwE~a~~  230 (267)
                            .=..|+|++|.|||+..+   .|.|.|=|+.+|..
T Consensus       151 ------NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~  185 (438)
T KOG0666|consen  151 ------NWVLHRDLKPANILVMGDGPERGRVKIADLGLARL  185 (438)
T ss_pred             ------hheeeccCCcceEEEeccCCccCeeEeecccHHHH
Confidence                  237899999999999864   25789999998863

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=83.05  E-value=0.74  Score=38.93  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=24.5

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFT  227 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~  227 (267)
                      ....+.|||..|.|||.+.. |-+.++|--.
T Consensus       160 ~~~~~lHGD~np~NiM~D~~-G~lKlVDP~~  189 (308)
T PF07387_consen  160 ENQHCLHGDCNPDNIMCDKF-GYLKLVDPVC  189 (308)
T ss_pred             cCCCeecCCCChhheeecCC-CCEEecChhh
Confidence            45679999999999999874 6788888653

The function of this family is unknown.

>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=82.40  E-value=1.1  Score=39.51  Aligned_cols=33  Identities=18%  Similarity=0.097  Sum_probs=28.4

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      -..+++.=||-|++|||++..+|.+.-|||.++
T Consensus       206 ~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~  238 (307)
T cd05170         206 MIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVC  238 (307)
T ss_pred             HHHHHccCCCCCCccEEEEcCCCcEEEEeeHhh
Confidence            345778889999999999965688999999987

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno

>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=82.34  E-value=1.2  Score=37.33  Aligned_cols=32  Identities=25%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+++.=||=|++|||++..+|.+.-|||.++-
T Consensus       127 ~YilglgDRh~~NIli~~~~G~~~hIDfg~~~  158 (219)
T cd00142         127 GYILGIGDRHPDNIMIDLDTGKLFHIDFGFIF  158 (219)
T ss_pred             HHHhccCCCCCccEEEECCCCeEEEEeeHHhh
Confidence            35567799999999999855789999999874

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.85  E-value=1.2  Score=37.78  Aligned_cols=33  Identities=15%  Similarity=0.097  Sum_probs=27.5

Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+++-=||=|++|||++..+|.+.-|||.++-
T Consensus       137 ~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~  169 (237)
T cd00892         137 VGYILGLGDRHGENILFDSNTGDVVHVDFNCLF  169 (237)
T ss_pred             HHHHhccCCCCcccEEEEcCCCcEEEEehHhhh
Confidence            446677899999999999756789999999763

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central

>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.57  E-value=1.2  Score=38.75  Aligned_cols=33  Identities=24%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      -..+++.=||=|++|||++.++|.+.-|||.++
T Consensus       178 ~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~  210 (279)
T cd05171         178 IVGYILGLGDRHANNILIDEKTAEVVHIDLGIA  210 (279)
T ss_pred             HHHHhhccCCCCcccEEEEcCcCcEEEEechhh
Confidence            345778889999999999965688999999987

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi

>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.39  E-value=1.5  Score=37.12  Aligned_cols=33  Identities=18%  Similarity=0.032  Sum_probs=28.1

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      -..+++.=||=|++|||++.++|.+.-|||.++
T Consensus       133 ~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~  165 (235)
T cd05172         133 VSHWILGIGDRHLSNFLVDLETGGLVGIDFGHA  165 (235)
T ss_pred             HHhheeeccCCCcccEEEECCCCcEEEEeeHhh
Confidence            345788899999999999955688999999976

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=80.84  E-value=0.93  Score=43.87  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHH
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFK  236 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD  236 (267)
                      -...++.|+|+++.|+++... +.+.++||.-+...-..|+
T Consensus       436 ~h~~GiahrdlK~enll~~~~-g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  436 LHSMGLAHRDLKLENLLVTEN-GILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             HHhcCceeccCccccEEEecC-CceEEeecCcceeeccCcc
Confidence            466889999999999999974 6889999998877665555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
3lq3_A	401	Crystal Structure Of Human Choline Kinase Beta In C		2e-20
3feg_A	379	Crystal Structure Of Human Choline Kinase Beta In C		2e-20
2ig7_A	401	Crystal Structure Of Human Choline Kinase B Length		1e-17
2cko_A	390	Crystal Structure Of Human Choline Kinase Alpha 2 L		1e-15
3c5i_A	369	Crystal Structure Of Plasmodium Knowlesi Choline Ki		3e-15
3zm9_A	383	The Mechanism Of Allosteric Coupling In Choline Kin		7e-15
3f2r_A	401	Crystal Structure Of Human Choline Kinase Alpha In		7e-15
2i7q_A	402	Crystal Structure Of Human Choline Kinase A Length		7e-15
2qg7_A	458	Plasmodium Vivax Ethanolamine Kinase Pv091845 Lengt		3e-14
3fi8_A	362	Crystal Structure Of Choline Kinase From Plasmodium		3e-13
1nw1_A	429	Crystal Structure Of Choline Kinase Length = 429		4e-13
3mes_A	424	Crystal Structure Of Choline Kinase From Cryptospor		5e-09

>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex With Phosphorylated Hemicholinium-3 And Adenosine Nucleotide Length = 401

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 36  DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct: 73  EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 132
Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++  
Sbjct: 133 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 192
Query: 152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+  + +++   +        +     +Y+LKDE+  L K L +    + FCHND+Q G
Sbjct: 193 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 252
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  +   ++   F  +  N++
Sbjct: 253 NILLLSEPENADSLMLVDFEYSSYNYR 279

>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex With Phosphorylated Hemicholinium-3 And Adenosine Nucleotide Length = 379

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 36  DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct: 51  EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 110
Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++  
Sbjct: 111 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 170
Query: 152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+  + +++   +        +     +Y+LKDE+  L K L +    + FCHND+Q G
Sbjct: 171 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 230
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  +   ++   F  +  N++
Sbjct: 231 NILLLSEPENADSLMLVDFEYSSYNYR 257

>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B Length = 401

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 6/207 (2%)
Query: 36  DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  +
Sbjct: 73  EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVXFAIL 132
Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
           + +  GP+L G F +GR+E++I +R L   ++R+P +S  +A K  +FH  + P  ++  
Sbjct: 133 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKXAQFHGXEXPFTKEPH 192
Query: 152 LLWDRLRKWVSVAKSFCSAKDAKEFCL--YTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
            L+    +++   +        +   L  Y+LKDE   L K L +    + FCHND+Q G
Sbjct: 193 WLFGTXERYLKQIQDLPPTGLPEXNLLEXYSLKDEXGNLRKLLESTPSPVVFCHNDIQEG 252
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
           NI++  E  +   +    F  +  N++
Sbjct: 253 NILLLSEPENADSLXLVDFEYSSYNYR 279

>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 Length = 390

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGE----GVEVFF 80
           W  + +D   + VI  +G ++N ++Q + P     L    R VL+R+YG     G E   
Sbjct: 54  WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQVGAEAMV 111
Query: 81  NRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREF 140
               E   F  ++ +  GP+L G F  GR+E+FI +R L   ++  P IS  +A KM  F
Sbjct: 112 L---ESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATF 168
Query: 141 HDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCLYTLKDEISMLEKELPN 194
           H +KMP  ++   L+  + K++         ++++     +   Y L  E+  L   L +
Sbjct: 169 HGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLES 228
Query: 195 DHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
               + FCHND Q GNI++ E  E S    ++   F  +  N++
Sbjct: 229 TPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 272

>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase, Pkh_134520 Length = 369

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 12  SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN----NGLARNV 67
           + P  +KK+      +W    +D+  L+V  +   +TN+++++    +     N +   V
Sbjct: 12  TDPLYIKKICLEKVPEWNHFTEDN--LRVKQILSGLTNQLFEVGLKEETANNYNSIRTRV 69
Query: 68  LVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDP 127
           L RIYG+ V+  +N   E   ++ MS     P+LL  F  GR+EE+++   L   D+++P
Sbjct: 70  LFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTFNGGRIEEWLYGDPLRIDDLKNP 129
Query: 128 KISELVAAKMREFHDLKMPGPRKALL---WDR--------------LRKWVSVAKSFC-- 168
            I   +A  + +FH L     RK  L   WDR              L K+ ++ K  C  
Sbjct: 130 TILIGIANVLGKFHTL----SRKRHLPEHWDRTPCIFKMMEKWKNQLFKYKNIEKYNCDI 185
Query: 169 ------SAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNI--------MID 214
                 S K  K   +Y+  D ++            I FCHNDLQ  NI        +ID
Sbjct: 186 HKYIKESDKFIKFMKVYSKSDNLA----------NTIVFCHNDLQENNIINTNKCLRLID 235
Query: 215 EETSSITIIVS 225
            E S    + +
Sbjct: 236 FEYSGFNFLAT 246

>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1 Revealed By A Rationally Designed Inhibitor Length = 383

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
           W  + +D   + VI  +G ++N ++Q + P     L    R VL+R+YG          E
Sbjct: 29  WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 86
Query: 75  GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
           G E    +++E +  E M          + +  GP+L G F  GR+E+FI +R L   ++
Sbjct: 87  GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 145
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
             P IS  +A KM  FH +KMP  ++   L+  + K++         ++++     +   
Sbjct: 146 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 205
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
           Y L  E+  L   L +    + FCHND Q GNI++ E  E S    ++   F  +  N++
Sbjct: 206 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 265

>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex With Hemicholinium-3 Length = 401

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
           W  + +D   + VI  +G ++N ++Q + P     L    R VL+R+YG          E
Sbjct: 47  WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 104
Query: 75  GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
           G E    +++E +  E M          + +  GP+L G F  GR+E+FI +R L   ++
Sbjct: 105 GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 163
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
             P IS  +A KM  FH +KMP  ++   L+  + K++         ++++     +   
Sbjct: 164 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 223
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
           Y L  E+  L   L +    + FCHND Q GNI++ E  E S    ++   F  +  N++
Sbjct: 224 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 283

>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A Length = 402

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
           W  + +D   + VI  +G ++N ++Q + P     L    R VL+R+YG          E
Sbjct: 48  WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 105
Query: 75  GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
           G E    +++E +  E M          + +  GP+L G F  GR+E+FI +R L   ++
Sbjct: 106 GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 164
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
             P IS  +A KM  FH +KMP  ++   L+  + K++         ++++     +   
Sbjct: 165 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 224
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
           Y L  E+  L   L +    + FCHND Q GNI++ E  E S    ++   F  +  N++
Sbjct: 225 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 284

>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845 Length = 458

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 33  DDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
           ++ D+L+   + G +TN    I    K+       L+R+YG   +   NR+ E +    +
Sbjct: 106 NEVDSLEFQIINGGITN----ILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCIL 161
Query: 93  SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM------- 145
            ++    ++   F +GR+EEF+    LS  DI++PK  +L+A  ++  HD+K+       
Sbjct: 162 YNKNIAKKIYVFFTNGRIEEFMDGYALSREDIKNPKFQKLIAKNLKLLHDIKLNENLYKE 221
Query: 146 -------PGPRKALLWDRLRKWVSV----AKSFCSAKDAKEFCLY-----TLKDEISMLE 189
                  PG R + LW+ + K+  +     K  CS  DAK   L       L+D I  +E
Sbjct: 222 LQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICSF-DAKANILKLIDFDVLRDSIVEVE 280
Query: 190 KELPNDHQEIGFCHNDLQYGNIM 212
                ++  I  CH DL   NI+
Sbjct: 281 SLCKRENSPIVLCHCDLLSSNII 303

>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium Falciparum, Pf14_0020 Length = 362

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 12  SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIA----WPAKNNGLARNV 67
           + P  +KK+      DW     + D + V  +   +TN++++++       +     R+V
Sbjct: 4   TDPLYIKKICLEKVHDWSRC--NEDDVCVNQILSGLTNQLFEVSIKEDTAIEYRITRRHV 61
Query: 68  LVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDP 127
           L RIYG+ V+  +N   E   ++ MS     P LL  F  GR+EE+++   LS  D+++ 
Sbjct: 62  LFRIYGKDVDALYNPLSEFEVYKTMSKYRIAPLLLNTFDGGRIEEWLYGDPLSIDDLKNK 121
Query: 128 KISELVAAKMREFHDL-----------KMPGPRKALLWDRLRKWVSVAKSFCSAK-DAKE 175
            I   +A  + +FH L           K P   K +  DR R  VS  K+      D  +
Sbjct: 122 SILVGIANVLGKFHTLSRKRHLPEHWDKTPCVFKMM--DRWRLAVSNYKNLDKVTLDINK 179
Query: 176 FCLYTLKD-EISMLEKELPNDHQEIGFCHNDLQYGNIM 212
           +   + K  +   +  ++ N   +I FCHNDLQ  NIM
Sbjct: 180 YIQESHKFLKFIKIYTQIENIANDIVFCHNDLQENNIM 217

>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase Length = 429

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 30/204 (14%)
Query: 36  DALQVIPLKGAMTNEVY-----QIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIR--- 87
           + L++  +KG M+N ++     ++  P +N      VL+R+Y       FN + E     
Sbjct: 74  EHLRISRIKGGMSNMLFLCRLSEVYPPIRNE--PNKVLLRVY-------FNPETESHLVA 124
Query: 88  ---TFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLK 144
               F  +S +  GP+L G F  GR+EE+I +R LS  +I    +S  +A ++ + H L+
Sbjct: 125 ESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLE 184
Query: 145 MPGPRKA-LLWDRLRKWVSVAKSFCSAK---DAKEFCLYT------LKDEISMLEKELPN 194
           +P  ++   L + L++W+        A+   D  E C  +      L  E+  L   +  
Sbjct: 185 VPIWKEPDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISL 244
Query: 195 DHQEIGFCHNDLQYGNIMIDEETS 218
               + FCHNDLQ GNI++ + +S
Sbjct: 245 SKSPVTFCHNDLQEGNILLPKASS 268

>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium Parvum Iowa Ii, Cgd3_2030 Length = 424

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 28  WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARN---VLVRIYGEGVEVFFNRDD 84
           W ++  +   ++V  +   +TN+++ ++   ++  L+     +L RIYG+ V  F++   
Sbjct: 65  WKEI--NESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKV 122
Query: 85  EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFH--- 141
           E+  F  +S+    P ++  F +GR+EEFI    L+   ++   I   VA  M   H   
Sbjct: 123 ELDVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIIN 182
Query: 142 ----DLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAK-EFCLYT-LKDEISMLEK----- 190
               D      ++ +L+ R+  W   AK   S  + + +  LY+ + +EI  LE+     
Sbjct: 183 SKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGG 242
Query: 191 -----------ELPNDHQEIGFCHNDLQYGNI--------MIDEETSSIT 221
                      +L +    + F HNDLQ  N+        MID E S+I 
Sbjct: 243 EKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNNIRMIDYEYSAIN 292

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	8e-47
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	1e-43
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	4e-43
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	5e-42
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	1e-39
3mes_A	424	Choline kinase; malaria, structural genomics, stru	2e-37
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	4e-33
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	2e-06
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	2e-05
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A* Length = 379

 Score =  159 bits (402), Expect = 8e-47
 Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 13/229 (5%)

Query: 11  SSSPEELKKVLQSVASD-----WGDVIDDSDALQVIPLKGAMTNEVYQIAWP---AKNNG 62
           SS   + ++       +     W  V    + L+V P+ G ++N +++ + P        
Sbjct: 23  SSLSRDAERRAYQWCREYLGGAWRRV--QPEELRVYPVSGGLSNLLFRCSLPDHLPSVGE 80

Query: 63  LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAA 122
             R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   
Sbjct: 81  EPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQ 140

Query: 123 DIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKS--FCSAKDAKEFCLY 179
           ++R+P +S  +A KM +FH ++MP  ++   L+  + +++   +        +     +Y
Sbjct: 141 ELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMY 200

Query: 180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF 228
           +LKDE+  L K L +    + FCHND+Q GNI++  E  +   ++   F
Sbjct: 201 SLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDF 249

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8 Length = 429

 Score =  152 bits (384), Expect = 1e-43
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 20/238 (8%)

Query: 7   ELLPSSSPEELKKVLQ----SVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWP---AK 59
           +   ++ PE  ++        +   W  V    + L++  +KG M+N ++          
Sbjct: 43  DTDANTIPELKERAHMLCARFLGGAWKTV--PLEHLRISRIKGGMSNMLFLCRLSEVYPP 100

Query: 60  NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTL 119
                  VL+R+Y    E   +   E   F  +S +  GP+L G F  GR+EE+I +R L
Sbjct: 101 IRNEPNKVLLRVYF-NPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPL 159

Query: 120 SAADIRDPKISELVAAKMREFHDLKMPGPR-KALLWDRLRKWVSVAKSFCSAKD------ 172
           S  +I    +S  +A ++ + H L++P  +    L + L++W+        A+       
Sbjct: 160 SCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYLCEALQRWLKQLTGTVDAEHRFDLPE 219

Query: 173 ---AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFT 227
                      L  E+  L   +      + FCHNDLQ GNI++ + +S    + S +
Sbjct: 220 ECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLS 277

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax} Length = 458

 Score =  151 bits (381), Expect = 4e-43
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 27/236 (11%)

Query: 12  SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRI 71
           +     K V+     D  +  ++ D+L+   + G +TN + ++   +K        L+R+
Sbjct: 86  TLYIYCKYVMLHYGKDLVNP-NEVDSLEFQIINGGITNILIKVKDMSKQ----AKYLIRL 140

Query: 72  YGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISE 131
           YG   +   NR+ E +    + ++    ++   F +GR+EEF+    LS  DI++PK  +
Sbjct: 141 YGPKTDEIINREREKKISCILYNKNIAKKIYVFFTNGRIEEFMDGYALSREDIKNPKFQK 200

Query: 132 LVAAKMREFHDLKM--------------PGPRKALLWDRLRKWVS----VAKSFCSAKDA 173
           L+A  ++  HD+K+              PG R + LW+ + K+        K  CS    
Sbjct: 201 LIAKNLKLLHDIKLNENLYKELQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICSFDAK 260

Query: 174 KE----FCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVS 225
                      L+D I  +E     ++  I  CH DL   NI+          +  
Sbjct: 261 ANILKLIDFDVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGE 316

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A* Length = 369

 Score =  146 bits (369), Expect = 5e-42
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 7   ELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN----NG 62
           E    + P  +KK+      +W       D L+V  +   +TN+++++    +     N 
Sbjct: 7   EFSDLTDPLYIKKICLEKVPEWNHF--TEDNLRVKQILSGLTNQLFEVGLKEETANNYNS 64

Query: 63  LARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAA 122
           +   VL RIYG+ V+  +N   E   ++ MS     P+LL  F  GR+EE+++   L   
Sbjct: 65  IRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTFNGGRIEEWLYGDPLRID 124

Query: 123 DIRDPKISELVAAKMREFHDLKMPGP------RKALLWDRLRKWVSVAKSFCSAKDAKEF 176
           D+++P I   +A  + +FH L           R   ++  + KW +    + + +     
Sbjct: 125 DLKNPTILIGIANVLGKFHTLSRKRHLPEHWDRTPCIFKMMEKWKNQLFKYKNIEKYNCD 184

Query: 177 CLYTLKDEISMLE-----KELPNDHQEIGFCHNDLQYGNIMIDEET 217
               +K+    ++      +  N    I FCHNDLQ  NI+   + 
Sbjct: 185 IHKYIKESDKFIKFMKVYSKSDNLANTIVFCHNDLQENNIINTNKC 230

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum} Length = 424

 Score =  135 bits (340), Expect = 2e-37
 Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 30/239 (12%)

Query: 7   ELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA-- 64
                +  E +  + +     W ++  +   ++V  +   +TN+++ ++   ++  L+  
Sbjct: 44  SFSTITDTEIIIGICRKNIPGWKEI--NESYIEVKQIFSGLTNQLFVVSIVNESMSLSLK 101

Query: 65  -RNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAAD 123
              +L RIYG+ V  F++   E+  F  +S+    P ++  F +GR+EEFI    L+   
Sbjct: 102 HPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQ 161

Query: 124 IRDPKISELVAAKMREFHDLKMP-------GPRKALLWDRLRKWVSVAKSFCSAKDAK-- 174
           ++   I   VA  M   H +            ++ +L+ R+  W   AK   S  + +  
Sbjct: 162 LQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQID 221

Query: 175 EFCLYTLKDEISMLE----------------KELPNDHQEIGFCHNDLQYGNIMIDEET 217
           +     + +EI  LE                 +L +    + F HNDLQ  N++  +  
Sbjct: 222 KELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNN 280

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti} Length = 301

 Score =  121 bits (304), Expect = 4e-33
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 24/207 (11%)

Query: 14  PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYG 73
            +E +  L ++    G           +   G +TN V++            ++ +RI G
Sbjct: 4   TDEARAKLAAIPMLAGYTG-------PLERLGGLTNLVFRA----------GDLCLRIPG 46

Query: 74  EGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGR--VEEFIH-ARTLSAADIR-DPKI 129
           +G E + NR +E       +  G  P +L         V  +I  A+T+S    +  P  
Sbjct: 47  KGTEEYINRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGS 106

Query: 130 SELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE 189
                   R+ H      P +  L+  +  +    K   +         + +  E   + 
Sbjct: 107 PARAGEAFRKLHGSGAVFPFRFELFAMIDDY---LKVLSTKNVTLPAGYHDVVREAGGVR 163

Query: 190 KELPNDHQEIGFCHNDLQYGNIMIDEE 216
             L      +  CH D    N +   E
Sbjct: 164 SALAAHPLPLAACHCDPLCENFLDTGE 190

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 Length = 264

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 20/203 (9%)

Query: 33  DDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNR---------- 82
            + D L       A    ++   W  +  G +   + R+  +G  V F +          
Sbjct: 2   IEQDGLHA-GSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNEL 60

Query: 83  DDEIRTFECMSSQGQ-GPRLLGRFGDGR----VEEFIHARTLSAADIRDPKISELVAAKM 137
            DE      +++ G     +L    +      +   +  + L ++ +   +   ++A  M
Sbjct: 61  QDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAM 120

Query: 138 REFHDLKMPG-PRKALLWDRLRKWVSVAKSFCSAKD--AKEFCLYTLKDEISMLEKELPN 194
           R  H L     P       R+ +  +  ++    +D   +E       +  + L+  +P 
Sbjct: 121 RRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMP- 179

Query: 195 DHQEIGFCHNDLQYGNIMIDEET 217
           D +++   H D    NIM++   
Sbjct: 180 DGEDLVVTHGDACLPNIMVENGR 202

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A* Length = 339

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 22/138 (15%)

Query: 100 RLLGRFGDGR--VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA------ 151
           +L  +    +     FIHA      ++   +  +L    +R+ H+  +P   +       
Sbjct: 87  KLFQQLKHFKIIAYPFIHAPNGFTQNLTGKQWKQL-GKVLRQIHETSVPISIQQQLRKEI 145

Query: 152 -------LLWDRLRKWVSVAKSFCSAKDAKEFC------LYTLKDEISMLEKELPNDHQE 198
                  ++     +              K F       ++ L D    L K++  D  +
Sbjct: 146 YSPKWREIVRSFYNQIEFDNSDDKLTAAFKSFFNQNSAAIHRLVDTSEKLSKKIQPDLDK 205

Query: 199 IGFCHNDLQYGNIMIDEE 216
              CH+D+  GN+++  E
Sbjct: 206 YVLCHSDIHAGNVLVGNE 223

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* Length = 263

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 67  VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGR----VEEFIHARTLSAA 122
            L           ++ + E      +  +   P++L           +         S  
Sbjct: 41  YLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEE 100

Query: 123 DIRD---PKISELVAAKMREFHDLKMPG-PRKALLWDRLRKWVSVAKSFCSAKDAKEFCL 178
              +    KI EL A  +R FH + +   P    L  RL +   +  +  +  D + +  
Sbjct: 101 YEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE 160

Query: 179 YTLKDEISMLEKELPN--DHQEIGFCHNDLQYGNIMIDE 215
            T   +   L   L      +E+ F H DL   NI + +
Sbjct: 161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 41/279 (14%), Positives = 78/279 (27%), Gaps = 82/279 (29%)

Query: 30  DVIDDSDALQVIP-LKGAMTNEVYQ--IAWPAKNNGLARNV-LVRIYGE-GVEVFFNRDD 84
             +D+ D   V    K  ++ E     I      +G  R    +    E  V+ F     
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 85  EIR---TFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFH 141
            I        + ++ + P +           +I  R     D      ++   ++++ + 
Sbjct: 88  RINYKFLMSPIKTEQRQPSM-------MTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYL 138

Query: 142 DLKMPGPRKALLWDRLRKWVSV------AKSFCSAKDAKEFCLYTLKDE----------- 184
            L     R+ALL  R  K V +       K+   A D                       
Sbjct: 139 KL-----RQALLELRPAKNVLIDGVLGSGKT-WVALDV-------CLSYKVQCKMDFKIF 185

Query: 185 -ISMLEKELPNDHQEI--GFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLN------- 234
            +++     P    E+     +          D    S  I +    +Q  L        
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKP 242

Query: 235 FKRACTKILLIL----------TFSVNSPMVCMRWLRIL 263
           ++      LL+L           F+++    C    +IL
Sbjct: 243 YENC----LLVLLNVQNAKAWNAFNLS----C----KIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	100.0
3mes_A	424	Choline kinase; malaria, structural genomics, stru	100.0
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	100.0
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	100.0
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	100.0
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	100.0
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	100.0
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	99.97
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.92
3ats_A	357	Putative uncharacterized protein; hypothetical pro	99.91
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	99.91
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.89
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.88
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	99.88
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	99.87
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	99.86
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	99.86
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	99.86
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	99.86
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	99.86
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.85
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	99.84
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	99.83
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	99.82
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	99.81
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	99.8
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	99.79
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.86
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.79
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.62
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.57
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.53
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	98.52
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.45
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.43
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	98.41
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	98.41
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	98.37
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.36
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	98.36
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	98.34
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	98.33
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.33
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	98.32
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	98.32
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	98.32
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	98.31
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	98.31
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	98.29
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.26
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.26
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	98.25
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	98.25
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	98.24
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	98.23
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.22
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.21
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	98.21
3uqc_A	286	Probable conserved transmembrane protein; structur	98.21
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	98.2
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.2
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	98.2
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	98.2
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	98.2
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.2
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	98.19
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	98.18
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	98.18
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	98.18
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	98.17
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	98.17
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.16
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	98.16
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	98.16
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	98.15
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	98.14
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	98.13
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	98.13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	98.13
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	98.13
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	98.13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.12
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	98.12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	98.11
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	98.11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	98.11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.1
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	98.1
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.1
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	98.1
2a19_B	284	Interferon-induced, double-stranded RNA-activated	98.09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	98.09
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	98.09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	98.09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	98.08
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	98.07
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	98.07
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	98.06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	98.06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	98.06
3soc_A	322	Activin receptor type-2A; structural genomics cons	98.06
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.06
3niz_A	311	Rhodanese family protein; structural genomics, str	98.06
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	98.05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.04
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.03
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.03
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.03
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	98.03
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	98.03
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	98.02
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.02
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.02
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	98.02
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	98.02
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	98.02
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.01
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	98.01
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	98.01
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	98.01
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	98.01
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.01
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	98.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	97.99
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	97.99
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	97.99
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	97.99
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	97.98
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	97.98
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.98
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.98
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	97.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	97.97
3bhy_A	283	Death-associated protein kinase 3; death associate	97.96
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	97.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	97.96
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	97.95
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	97.95
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	97.94
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	97.94
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.94
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	97.94
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.94
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	97.94
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	97.94
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	97.93
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	97.93
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	97.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.93
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.93
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	97.93
4aoj_A	329	High affinity nerve growth factor receptor; transf	97.93
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	97.93
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	97.93
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	97.93
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	97.92
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	97.92
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.92
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.91
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	97.91
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	97.91
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	97.9
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.9
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.9
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	97.89
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.89
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.89
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	97.89
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.88
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	97.88
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	97.88
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	97.88
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	97.88
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	97.88
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.88
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	97.88
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	97.88
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	97.87
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	97.86
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	97.86
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	97.86
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	97.86
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	97.86
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	97.86
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	97.86
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.86
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	97.86
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.85
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	97.85
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	97.85
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.85
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.85
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.84
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	97.84
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	97.84
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.84
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	97.83
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.83
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	97.83
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.83
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.83
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.82
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.82
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	97.81
3fme_A	290	Dual specificity mitogen-activated protein kinase;	97.81
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	97.81
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.8
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.8
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.79
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	97.77
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	97.77
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	97.77
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	97.76
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.76
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.76
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	97.76
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	97.74
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.73
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	97.73
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	97.72
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.72
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.71
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.71
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	97.71
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.7
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	97.7
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.69
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.68
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.68
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.68
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.68
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	97.68
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.67
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.67
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.66
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.65
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.65
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.64
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	97.64
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	97.64
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	97.63
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.63
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	97.62
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.62
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.62
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.62
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	97.62
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	97.61
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	97.61
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.6
3rp9_A	458	Mitogen-activated protein kinase; structural genom	97.59
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.59
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	97.58
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.57
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.57
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.56
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	97.54
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.53
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.48
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	97.47
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	97.47
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	97.45
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	97.43
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.35
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	97.33
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.33
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.24
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	97.23
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.2
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.17
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.14
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	95.86
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	95.44

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=100.00  E-value=5e-36  Score=272.81  Aligned_cols=226  Identities=23%  Similarity=0.372  Sum_probs=183.6

Q ss_pred             CCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCcccccChHHHH
Q 024452           10 PSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVEVFFNRDDEI   86 (267)
Q Consensus        10 ~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~~~~dr~~E~   86 (267)
                      -..+.+.+.++|..++|+|.++.  ++.+++++++||+||.+|+|+.+...+   ..+.+||+|++++++..++||++|+
T Consensus        47 ~~~d~~~l~~l~~~~~p~w~~~~--~~~~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~  124 (424)
T 3mes_A           47 TITDTEIIIGICRKNIPGWKEIN--ESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVEL  124 (424)
T ss_dssp             ---CHHHHHHHHHHHSTTCTTCC--GGGEEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHH
T ss_pred             cCCCHHHHHHHHHHHcCccccCC--CCceEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHH
Confidence            34577899999999999999764  378999999999999999998752110   0147999999998887889999999


Q ss_pred             HHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCC-----CC--CCCchhHHHHHH
Q 024452           87 RTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM-----PG--PRKALLWDRLRK  159 (267)
Q Consensus        87 ~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~-----~~--~~~~~~~~~l~~  159 (267)
                      ++++.|++.|++|++++.+++++|++||+|++++..++.++.+..++|+.|++||+...     |.  ...+.++.++.+
T Consensus       125 ~~l~~L~~~gi~P~l~~~~~~~~I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~  204 (424)
T 3mes_A          125 DVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYL  204 (424)
T ss_dssp             HHHHHHHHTTSSCCEEEEETTEEEEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCEEEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHH
Confidence            99999999999999999888899999999999998888899999999999999999865     43  345678999999


Q ss_pred             HHHHHhhccCccc--ccccchhhHHHHHHHHHHhCC----------------CCCCcEEEEccCCCCCCeeeeCCCCCEE
Q 024452          160 WVSVAKSFCSAKD--AKEFCLYTLKDEISMLEKELP----------------NDHQEIGFCHNDLQYGNIMIDEETSSIT  221 (267)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~l~----------------~~~~~~~l~H~Dl~~~Nilv~~~~~~v~  221 (267)
                      |..++.+......  ....+++.+..++++|++.+.                ....+.++||||++++||| ++ ++.+.
T Consensus       205 w~~~~~~~~~~~~~~~~~~~~~~l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~-~~~~~  282 (424)
T 3mes_A          205 WREEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QT-QNNIR  282 (424)
T ss_dssp             HHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-EC-SSCEE
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cC-CCcEE
Confidence            9988765432110  011244667778888877664                3466899999999999999 54 46899


Q ss_pred             EEeecccCcchHhHHHHh
Q 024452          222 IIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       222 lIDwE~a~~~~~~fD~A~  239 (267)
                      |||||+|++|+++||+|.
T Consensus       283 ~IDwe~a~~~~~~~Dla~  300 (424)
T 3mes_A          283 MIDYEYSAINFAGADIAN  300 (424)
T ss_dssp             ECCCTTCEEEEHHHHHHH
T ss_pred             EEecccCCcCChHHHHHH
Confidence            999999999999999774

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=100.00  E-value=1e-35  Score=267.41  Aligned_cols=249  Identities=24%  Similarity=0.410  Sum_probs=188.0

Q ss_pred             hHHHHHHHHHhC-CCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCC---CCCCCceEEEEEcCCCcccccChHHHHHHH
Q 024452           14 PEELKKVLQSVA-SDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAK---NNGLARNVLVRIYGEGVEVFFNRDDEIRTF   89 (267)
Q Consensus        14 ~~~~~~l~~~~~-p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~---~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~   89 (267)
                      .+++.++|++++ |.|+.++  .+.+++++++||.||.+|+|+.+..   .++++.+||+|++++......++.+|++++
T Consensus        30 ~~~~~~~~~~~l~~~W~~~~--~~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl  107 (379)
T 3feg_A           30 ERRAYQWCREYLGGAWRRVQ--PEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMF  107 (379)
T ss_dssp             HHHHHHHHHHHHCGGGGGCC--GGGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcCCCCC--cCceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHH
Confidence            377999999998 6899875  3789999999999999999986421   011357999999977655566778999999


Q ss_pred             HHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCch-hHHHHHHHHHHHhhcc
Q 024452           90 ECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL-LWDRLRKWVSVAKSFC  168 (267)
Q Consensus        90 ~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~-~~~~l~~~~~~~~~~~  168 (267)
                      +.|++.|++|++++.+++|+|++||+|++++...+.++.+..++|+.|++||+...+....+. ++.++.+|..++.+..
T Consensus       108 ~~L~~~gv~P~ll~~~~~g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~  187 (379)
T 3feg_A          108 AILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLP  187 (379)
T ss_dssp             HHHHHTTSSCCEEEEETTEEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCCCeEEEEcCCccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999988888999999999999999999877655555 7899999998886553


Q ss_pred             Ccccc--cccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC---CCCEEEEeecccCcchHhHHHHh-hhh
Q 024452          169 SAKDA--KEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE---TSSITIIVSFTFLQNMLNFKRAC-TKI  242 (267)
Q Consensus       169 ~~~~~--~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~---~~~v~lIDwE~a~~~~~~fD~A~-~~~  242 (267)
                      .....  ..+....+.+++++|++.+...+.+.++||||++++|||++++   ++.+.|||||+|++|+++||+|. +..
T Consensus       188 ~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~~~Dla~~~~~  267 (379)
T 3feg_A          188 PTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCE  267 (379)
T ss_dssp             CCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEEHHHHHHHHHHH
T ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCChHHHHHHHHHH
Confidence            21100  0011125778888888887666788999999999999999864   25799999999999999999664 333


Q ss_pred             hheeeeccC------------CchhHhHHHHHHh
Q 024452          243 LLILTFSVN------------SPMVCMRWLRILC  264 (267)
Q Consensus       243 ~~~~~~~~~------------~~~~~~~~~~~~~  264 (267)
                      .++.|....            +.....+|++.|+
T Consensus       268 ~~~dy~~~~~p~~~~~~~~yp~~e~q~~fl~~Yl  301 (379)
T 3feg_A          268 WVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL  301 (379)
T ss_dssp             TTEETTCSSTTSCEECGGGSCCHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCccccCcccCcCHHHHHHHHHHHH
Confidence            344332111            2233567888876

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=100.00  E-value=5.2e-34  Score=258.78  Aligned_cols=222  Identities=26%  Similarity=0.433  Sum_probs=172.0

Q ss_pred             HHHHHHHHhCCC-CCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCcccccChH--------
Q 024452           16 ELKKVLQSVASD-WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVEVFFNRD--------   83 (267)
Q Consensus        16 ~~~~l~~~~~p~-w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~~~~dr~--------   83 (267)
                      ++..+|++++|+ |++++  ++.++|++|+||+||.+|+|+.++...   ..+.++++|++++++...++|.        
T Consensus        34 ~a~~~c~~~l~g~W~~v~--~~~l~v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g~~~~~~~~r~~~~~~~~~  111 (401)
T 3g15_A           34 RAYLWCKEFLPGAWRGLR--EDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQK  111 (401)
T ss_dssp             HHHHHHHHHSCGGGTTCC--GGGCEEEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------
T ss_pred             HHHHHHHHhCCccccCCC--cCCEEEEEeCCccccceEEEEECCCCcccccCCCeEEEEeCCCCccchhhhhHHHHHHHH
Confidence            456689999985 99886  478999999999999999999764211   1346899999998876665553        


Q ss_pred             -----------HHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCc-
Q 024452           84 -----------DEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-  151 (267)
Q Consensus        84 -----------~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~-  151 (267)
                                 .|..+++.++..|++|++++.+++|++++|++|++++..++.++.+..++|+.|++||+...+....+ 
T Consensus       112 ~~~~~~~~~~~~e~~~~~~ls~~g~~p~l~~~f~~g~i~e~i~g~~l~~~~~~~~~~~~~ia~~La~lH~~~~~~~~~~~  191 (401)
T 3g15_A          112 ENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPK  191 (401)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTSSCCEEEEETTEEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCC
T ss_pred             HHhccCCCCCcchhHHHHHHHhCCCCCEEEEEECCcEEEEecCCCcCChhhhcCHHHHHHHHHHHHHHhccccccccccc
Confidence                       36667889999999999999999999999999999999999999999999999999999987654433 


Q ss_pred             hhHHHHHHHHHHHhhccCccc-----ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeC-----CCCCEE
Q 024452          152 LLWDRLRKWVSVAKSFCSAKD-----AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE-----ETSSIT  221 (267)
Q Consensus       152 ~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~-----~~~~v~  221 (267)
                      ..+..+.+|...+.+......     ........+..++++|++.+...+.+.||||||++++|||+.+     +++.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~vfcHnDl~~gNil~~~~~~~~~~~~l~  271 (401)
T 3g15_A          192 WLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLM  271 (401)
T ss_dssp             HHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSCCEE
T ss_pred             hHHHHHHHHHHHHHhhccccHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCeeeEEecCCCCeEEEecCcccCcCCeEE
Confidence            467788888887765432211     0011123566778888888777788999999999999999953     235699


Q ss_pred             EEeecccCcchHhHHHHh
Q 024452          222 IIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       222 lIDwE~a~~~~~~fD~A~  239 (267)
                      +||||||++|+++||+|.
T Consensus       272 vIDwEya~~n~~~fDlan  289 (401)
T 3g15_A          272 LIDFEYSSYNYRGFDIGN  289 (401)
T ss_dssp             ECCCTTCEEEEHHHHHHH
T ss_pred             EechHhccCCCchHhHHH
Confidence            999999999999999773

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=100.00  E-value=2.3e-33  Score=256.51  Aligned_cols=229  Identities=24%  Similarity=0.395  Sum_probs=181.5

Q ss_pred             ccccCCCC-------hHHHHHHHHHhC-CCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCC
Q 024452            6 TELLPSSS-------PEELKKVLQSVA-SDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGE   74 (267)
Q Consensus         6 ~~~~~~~~-------~~~~~~l~~~~~-p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~   74 (267)
                      +++-|+|+       .+.+.++|.+++ |.|..+.  ++.+++++++||.+|.+|+|+.+...   .+++.++|+|+++.
T Consensus        38 ~~~~~~~~~~~~~~~~~~a~~l~~~~l~~~w~~~~--~~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~  115 (429)
T 1nw1_A           38 STMDLDTDANTIPELKERAHMLCARFLGGAWKTVP--LEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN  115 (429)
T ss_dssp             TTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCC--GGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS
T ss_pred             ccCCCcccccccHHHHHHHHHHHHHhccCCcCCCC--ccceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCC
Confidence            45667665       378999999965 7898654  47799999999999999999875210   01247999999965


Q ss_pred             -Cc-ccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCch
Q 024452           75 -GV-EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL  152 (267)
Q Consensus        75 -~~-~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~  152 (267)
                       ++ ..++   .|..+++.|++.|++|++++.+++|+|++||+|++++...+.++.+..++|+.|++||+...+....+.
T Consensus       116 ~~~~~~li---~E~~~l~~L~~~g~~P~l~~~~~~g~v~e~l~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~~~~  192 (429)
T 1nw1_A          116 PETESHLV---AESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPD  192 (429)
T ss_dssp             CCCHHHHH---HHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSSC
T ss_pred             CCcHHHHH---HHHHHHHHHHhCCCCCcEEEEeCCCEEEEEeCCcccChhhcCCHHHHHHHHHHHHHHhCCccccCCCcc
Confidence             33 3344   799999999999999999999999999999999999888888888999999999999998776544455


Q ss_pred             -hHHHHHHHHHHHhhccCcc---------cccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC------
Q 024452          153 -LWDRLRKWVSVAKSFCSAK---------DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE------  216 (267)
Q Consensus       153 -~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~------  216 (267)
                       ++..+.+|...+.......         .........+.++++++++.+.....+.+|||||++++|||++++      
T Consensus       193 ~~~~~i~~w~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~v~~H~Dl~~gNiL~~~~~~~~~~  272 (429)
T 1nw1_A          193 YLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIR  272 (429)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC-------
T ss_pred             hHHHHHHHHHHHHHhhcccccccccccccccccccHHHHHHHHHHHHHhccccCCCeEEEeCCCCCCeEEeeCCcccccc
Confidence             7888999988765432210         011234567888889998887666778999999999999999873      


Q ss_pred             ---------------------CCCEEEEeecccCcchHhHHHHh
Q 024452          217 ---------------------TSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       217 ---------------------~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                                           .+.++|||||+|++|+++||+|.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~g~p~~DLA~  316 (429)
T 1nw1_A          273 MPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFAN  316 (429)
T ss_dssp             -----------------------CCEECCCTTCEEEEHHHHHHH
T ss_pred             ccccccccccccccccccccCCCeEEEEecccCCcCccHHHHHH
Confidence                                 15689999999999999999774

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=100.00  E-value=9.6e-33  Score=253.86  Aligned_cols=227  Identities=22%  Similarity=0.299  Sum_probs=172.8

Q ss_pred             CCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCeeEEEee
Q 024452           35 SDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI  114 (267)
Q Consensus        35 ~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i  114 (267)
                      .+.+++++|+||++|.+|+|+.+.    .+.++|+|++++++..++||++|..+++.|++.|++|++++.+++|+|++||
T Consensus       108 ~~~~~i~~lsgG~tN~~y~v~~~~----~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~G~v~e~I  183 (458)
T 2qg7_A          108 VDSLEFQIINGGITNILIKVKDMS----KQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFTNGRIEEFM  183 (458)
T ss_dssp             STTEEEEEECC--CEEEEEEEETT----TTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEETTEEEEECC
T ss_pred             ccCeEEEEcCCCeEeEEEEEEECC----CCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeCCeEEEEee
Confidence            367999999999999999998642    1379999999887777899999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCC------------C--CCCchhHHHHHHHHHHHhhccCcc-------c-
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMP------------G--PRKALLWDRLRKWVSVAKSFCSAK-------D-  172 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~------------~--~~~~~~~~~l~~~~~~~~~~~~~~-------~-  172 (267)
                      +|++++..++.++.+..++|+.|++||+...+            .  ...+.++..+.+|...+.......       . 
T Consensus       184 ~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~  263 (458)
T 2qg7_A          184 DGYALSREDIKNPKFQKLIAKNLKLLHDIKLNENLYKELQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICSFDAKANI  263 (458)
T ss_dssp             CSEECCTTTTTSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCCSSSCCSHHHHHHHHHHHHHHHHHSCCCTTSTTHH
T ss_pred             CCccCChhhcCCHHHHHHHHHHHHHHhcCCccccchhcccccccccCCCCccHHHHHHHHHHHHHHhccccccccchhhh
Confidence            99999888888889999999999999998765            1  234567888999988765321100       0 


Q ss_pred             ccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeC------------------------------------C
Q 024452          173 AKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE------------------------------------E  216 (267)
Q Consensus       173 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~------------------------------------~  216 (267)
                      ...+++..+.+.++++++.+.....+.+|||||++++|||++.                                    +
T Consensus       264 ~~~~~~~~l~~~~~~L~~~l~~~~~~~v~cHnDl~~gNIL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (458)
T 2qg7_A          264 LKLIDFDVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEGGETGEGGETGEGGE  343 (458)
T ss_dssp             HHHBCHHHHHHHHHHHHHHHHTTTCCEEEECSCCCGGGEEECCC-----------------------------------C
T ss_pred             cccCCHHHHHHHHHHHHHHhhhccCCeeEEecCCCCCcEEeecccccccccccccccccccccccccccccccccccCCC
Confidence            0012456778888888877765677899999999999999982                                    2


Q ss_pred             CCCEEEEeecccCcchHhHHHHhh--hhhhee--eeccCCchhHhHHHHHHhh
Q 024452          217 TSSITIIVSFTFLQNMLNFKRACT--KILLIL--TFSVNSPMVCMRWLRILCL  265 (267)
Q Consensus       217 ~~~v~lIDwE~a~~~~~~fD~A~~--~~~~~~--~~~~~~~~~~~~~~~~~~~  265 (267)
                      ++.++|||||||++|+++||+|..  .+.-+.  +...-.......|++.|+-
T Consensus       344 ~~~l~lIDfEya~~gdp~~DLA~~~~ew~~~~~d~~~~P~~~~~~~fl~~Y~~  396 (458)
T 2qg7_A          344 GDSISFIDFEYSCPMERAYDIANHFNEYAGFNCDWDLTPSKEEEYHFIMHYLG  396 (458)
T ss_dssp             CCCEEECCCTTCEEEEHHHHHHHHHHGGGTTTTCGGGSCCHHHHHHHHHHHHT
T ss_pred             CCeEEEEeecCCCCCCcHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHhc
Confidence            356999999999999999997753  221120  0000123335677777764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=100.00  E-value=1.5e-31  Score=239.67  Aligned_cols=231  Identities=25%  Similarity=0.401  Sum_probs=169.6

Q ss_pred             cccccCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCC----CCCCceEEEEEcCCCccccc
Q 024452            5 TTELLPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN----NGLARNVLVRIYGEGVEVFF   80 (267)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~----~~~~~~~vlRi~~~~~~~~~   80 (267)
                      .++..-.++++.+.++|..++|.|.++.  ++.+++.++++|.+|.+|+|+...+.    ...+.++|+|++++++..++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~~~~~w~~~~--~~~~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~   82 (369)
T 3c5i_A            5 AQEFSDLTDPLYIKKICLEKVPEWNHFT--EDNLRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELY   82 (369)
T ss_dssp             ------CCCHHHHHHHHHHHCGGGTTCC--GGGEEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTS
T ss_pred             hhhhhccCCHHHHHHHHHHHCCCCCCCC--cCceEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcccee
Confidence            3566677889999999999999999764  36789999999999999999864200    00126899999988777778


Q ss_pred             ChHHHHHHHHHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCC----C--CCCchhH
Q 024452           81 NRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP----G--PRKALLW  154 (267)
Q Consensus        81 dr~~E~~~~~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~----~--~~~~~~~  154 (267)
                      +|..|.++++.|++.|++|++++.+++++|++||+|+++....+.++....++|+.|++||+...+    .  ...+.++
T Consensus        83 ~~~~E~~~l~~L~~~g~~P~~~~~~~~~~v~e~i~G~~l~~~~~~~~~~~~~~a~~La~lH~~~~~~~~~~~~~~~p~~~  162 (369)
T 3c5i_A           83 NTISEFEVYKTMSKYKIAPQLLNTFNGGRIEEWLYGDPLRIDDLKNPTILIGIANVLGKFHTLSRKRHLPEHWDRTPCIF  162 (369)
T ss_dssp             CHHHHHHHHHHHHHTTSSCCEEEEETTEEEEECCCSEECCGGGGGCHHHHHHHHHHHHHHHTHHHHSCCCTTSCCSCHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCceEEecCCcEEEEEecCCcCChhhcCChHHHHHHHHHHHHHHcCcccccCcccCCCCCcHH
Confidence            899999999999999999999998888899999999998877777888899999999999997432    1  2234577


Q ss_pred             HHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC------CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          155 DRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL------PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l------~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      .+++.|...+.+....... ..++..+.++++++.+.+      .....+.++||||++++|||+++  +.+.|||||+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~HgDl~~~Nil~~~--~~~~lID~e~a  239 (369)
T 3c5i_A          163 KMMEKWKNQLFKYKNIEKY-NCDIHKYIKESDKFIKFMKVYSKSDNLANTIVFCHNDLQENNIINTN--KCLRLIDFEYS  239 (369)
T ss_dssp             HHHHHHHHHHTTCSSGGGC--CCHHHHHHHHHHHHHHHHHHTTSSCGGGCEEEECSCCCGGGEEECC---CEEECCCTTC
T ss_pred             HHHHHHHHHHhhhhhHHHH-HhhHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEeCCCCcccEEecC--CcEEEEEecCC
Confidence            7888888776443210000 012344444444444433      22456799999999999999985  35999999999


Q ss_pred             CcchHhHHHHhh
Q 024452          229 LQNMLNFKRACT  240 (267)
Q Consensus       229 ~~~~~~fD~A~~  240 (267)
                      ++|+++||+|.+
T Consensus       240 ~~g~~~~Dla~~  251 (369)
T 3c5i_A          240 GFNFLATDIANF  251 (369)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             CCCchHHHHHHH
Confidence            999999997653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=99.97  E-value=8.3e-30  Score=222.27  Aligned_cols=186  Identities=18%  Similarity=0.188  Sum_probs=149.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--CeeEEEee-cC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DGRVEEFI-HA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~~v~e~i-~G  116 (267)
                      ++++++|.+|.+|++          +++|+|++++++..+++|++|+.+++.+++.|++|++++.++  ++++++|+ +|
T Consensus        23 i~~l~gG~tN~~~~~----------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~~~~~v~e~i~~g   92 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYIAGA   92 (301)
T ss_dssp             CEEEESCSSEEEEEE----------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTTTCCEEEECCTTC
T ss_pred             eeEcCCcccccccee----------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECCCCEEEEeecCCC
Confidence            789999999999999          479999999887778899999999999999999999999886  45999999 99


Q ss_pred             CCCCcccCCC-hHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          117 RTLSAADIRD-PKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       117 ~~l~~~~l~~-~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      ++++...+.+ +.+..++|+.|++||+...+.....+++..+..|...+.+....   ...+...+.+.++.+.+.+...
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~l~~~l~~~  169 (301)
T 3dxq_A           93 QTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVT---LPAGYHDVVREAGGVRSALAAH  169 (301)
T ss_dssp             EECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCC---CCTTHHHHHHHHHHHHHHHHSS
T ss_pred             ccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCC---chhhHHHHHHHHHHHHHHHHhc
Confidence            9988655544 56789999999999998765544456788888888766443221   1123567778888888776555


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      ..+.++||||++++|||.+  ++.+.+||||+|++|++.||+|.+
T Consensus       170 ~~~~~l~HgDl~~~Nil~~--~~~~~lID~e~a~~g~~~~Dla~~  212 (301)
T 3dxq_A          170 PLPLAACHCDPLCENFLDT--GERMWIVDWEYSGMNDPLWDLGDL  212 (301)
T ss_dssp             CCCCEEECSCCCGGGEEEC--SSCEEECCCTTCEEECTHHHHHHH
T ss_pred             CCCceeeccCCCcCCEEEC--CCCEEEEecccccCCCHHHHHHHH
Confidence            7789999999999999954  357899999999999999998764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.92  E-value=2.2e-23  Score=185.69  Aligned_cols=211  Identities=12%  Similarity=0.203  Sum_probs=150.9

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcC--CCc--ccccChHHHH
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYG--EGV--EVFFNRDDEI   86 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~--~~~--~~~~dr~~E~   86 (267)
                      ..+.+.+.+++...+|.+.      ...+++++.+|.+|.+|+++..      ++++|+|++.  ++.  ....+..+|+
T Consensus        20 ~ld~~~l~~~l~~~~~~~~------~~~~~~~l~~G~sn~~y~v~~~------~~~~vlr~~~~p~~~~~~~~~~~~~E~   87 (359)
T 3dxp_A           20 RFDTEALEAWMRQHVEGFA------GPLSVEQFKGGQSNPTFKLVTP------GQTYVMRAKPGPKSKLLPSAHAIEREY   87 (359)
T ss_dssp             CCCHHHHHHHHHHHSTTCC------CCCEEEECCC-CCSCEEEEECS------SCEEEEECCCC----------CHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCC------CCceEEEcCCcccceEEEEEEC------CceEEEEeCCCCCCCCCCcHHHHHHHH
Confidence            3567889999999998765      4578999999999999999853      3799999986  443  1123446899


Q ss_pred             HHHHHHHhCCC-CceEEEEECCe-------eEEEeecCCCCCccc---CCC---hHHHHHHHHHHHhhccCCCCCCC---
Q 024452           87 RTFECMSSQGQ-GPRLLGRFGDG-------RVEEFIHARTLSAAD---IRD---PKISELVAAKMREFHDLKMPGPR---  149 (267)
Q Consensus        87 ~~~~~l~~~gl-~P~v~~~~~~~-------~v~e~i~G~~l~~~~---l~~---~~i~~~la~~La~lH~~~~~~~~---  149 (267)
                      ++++.|++.|+ +|+++..+.+.       +|++|++|+++....   +..   ..+..++++.|++||+...+...   
T Consensus        88 ~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~  167 (359)
T 3dxp_A           88 RVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGD  167 (359)
T ss_dssp             HHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTT
T ss_pred             HHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccc
Confidence            99999999887 79999987532       799999999885422   221   34688999999999998754321   


Q ss_pred             ----CchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC-CcEEEEccCCCCCCeeeeCCCCC-EEEE
Q 024452          150 ----KALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH-QEIGFCHNDLQYGNIMIDEETSS-ITII  223 (267)
Q Consensus       150 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~l~H~Dl~~~Nilv~~~~~~-v~lI  223 (267)
                          ...+...+..|.........      ...+.+...++++.+.+.... .+.++||||++++|||+++++.. +.||
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~vi  241 (359)
T 3dxp_A          168 YGKPGNYFQRQIERWTKQYKLSET------ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVL  241 (359)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHCC------SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEEC
T ss_pred             cCCCCCchHHHHHHHHHHHHhcCC------cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEE
Confidence                11233456667665543221      123556666677766553322 36899999999999999875323 5899


Q ss_pred             eecccCcchHhHHHHh
Q 024452          224 VSFTFLQNMLNFKRAC  239 (267)
Q Consensus       224 DwE~a~~~~~~fD~A~  239 (267)
                      |||+|++|++.+|+|.
T Consensus       242 Dwe~a~~g~p~~DLa~  257 (359)
T 3dxp_A          242 DWELSTLGHPMGDFGY  257 (359)
T ss_dssp             CCTTCEEECHHHHHHH
T ss_pred             CccccccCCHHHHHHH
Confidence            9999999999999765

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=99.91  E-value=2.4e-23  Score=185.10  Aligned_cols=218  Identities=12%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCcEEEEEe-cCceeeeeEEEEeCCCCCC--CCceEEEEEcCCCcc----cccChHHHH
Q 024452           14 PEELKKVLQSVASDWGDVIDDSDALQVIPL-KGAMTNEVYQIAWPAKNNG--LARNVLVRIYGEGVE----VFFNRDDEI   86 (267)
Q Consensus        14 ~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l-~~G~~N~vy~v~~~~~~~~--~~~~~vlRi~~~~~~----~~~dr~~E~   86 (267)
                      ++.+..++.+.+|.+.+    .+...++++ ++|.+|.+|+|+.....++  ++.++|+|++.++..    ...+..+|+
T Consensus         3 ~~~l~~~l~~~~~~~~~----~~v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~   78 (357)
T 3ats_A            3 PAVISRWLSSVLPGGAA----PEVTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQF   78 (357)
T ss_dssp             HHHHHHHHHHHSCTTCC----CEEEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHhcCCcCC----CceEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHH
Confidence            57789999999998753    234578898 9999999999975310000  146899999865431    123457999


Q ss_pred             HHHHHHHhC-CC-CceEEEEECCe-------eEEEeecCCCCCcc-----------cCCC---hHHHHHHHHHHHhhccC
Q 024452           87 RTFECMSSQ-GQ-GPRLLGRFGDG-------RVEEFIHARTLSAA-----------DIRD---PKISELVAAKMREFHDL  143 (267)
Q Consensus        87 ~~~~~l~~~-gl-~P~v~~~~~~~-------~v~e~i~G~~l~~~-----------~l~~---~~i~~~la~~La~lH~~  143 (267)
                      ++++.|++. |+ +|++++.+.++       +|++|++|+++...           .+..   ..+..++|+.|++||+.
T Consensus        79 ~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~La~LH~~  158 (357)
T 3ats_A           79 EVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLHSI  158 (357)
T ss_dssp             HHHHHHHHHCCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhcCCCCCCcEEEEccCCCccCCceEEEEecCCCChhhcCcccccccccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            999999997 75 79999986532       89999999987642           1221   24688999999999998


Q ss_pred             CCCC------C----CCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC--CcEEEEccCCCCCCe
Q 024452          144 KMPG------P----RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH--QEIGFCHNDLQYGNI  211 (267)
Q Consensus       144 ~~~~------~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~~l~H~Dl~~~Ni  211 (267)
                      ..+.      .    ....+...+..|..........    ....+.+...++++.+.+....  .+.++||||++++||
T Consensus       159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~HgDl~~~Ni  234 (357)
T 3ats_A          159 PNAQNTFSFLTQGRTSDTTLHRHFNWVRSWYDFAVEG----IGRSPLLERTFEWLQSHWPDDAAAREPVLLWGDARVGNV  234 (357)
T ss_dssp             SSHHHHTGGGC-----CCHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHTCCHHHHHSCCEEECSSCSGGGE
T ss_pred             CCccCChhhccCCCCCCchHHHHHHHHHHHHHhhccC----CCCChHHHHHHHHHHHhCCCcccCCCceEEeCCCCCCeE
Confidence            6531      0    0111223445555443221000    0012345555666665543211  378999999999999


Q ss_pred             eeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          212 MIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       212 lv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      |+++ ++.++|||||+|++|++.+|+|.+
T Consensus       235 l~~~-~~~~~vIDwe~a~~g~p~~Dla~~  262 (357)
T 3ats_A          235 LYRD-FQPVAVLDWEMVALGPRELDVAWM  262 (357)
T ss_dssp             EEET-TEEEEECCGGGCEEECHHHHHHHH
T ss_pred             EEeC-CcEEEEEcccccccCCcHHHHHHH
Confidence            9985 345789999999999999997753

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=99.91  E-value=4.6e-23  Score=180.69  Aligned_cols=232  Identities=12%  Similarity=0.091  Sum_probs=146.4

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC-cccccChHHHHHHH
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG-VEVFFNRDDEIRTF   89 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~-~~~~~dr~~E~~~~   89 (267)
                      ..+++.+.+++..+ + +      .+..++.++.+|.+|.+|+|++.      +++||+|++.+. ....  ...|.+++
T Consensus         6 ~~~~~~l~~~l~~~-~-~------~~~~~~~~i~~G~~n~~~~v~~~------~g~~vlk~~~~~~~~~~--l~~e~~~l   69 (322)
T 2ppq_A            6 DITEDELRNFLTQY-D-V------GSLTSYKGIAEGVENSNFLLHTT------KDPLILTLYEKRVEKND--LPFFLGLM   69 (322)
T ss_dssp             CCCHHHHHHHHTTB-C-C------CCEEEEEEECC---EEEEEEEES------SCCEEEEEECC---CCH--HHHHHHHH
T ss_pred             cCCHHHHHHHHHhC-C-C------CcceEeeccCCCcccceEEEEeC------CccEEEEEeCCCCCHHH--HHHHHHHH
Confidence            46778888888753 2 1      14578999999999999999863      358999998763 2222  24799999


Q ss_pred             HHHHhCCC-CceEEEEEC--------C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC-CchhHHHH
Q 024452           90 ECMSSQGQ-GPRLLGRFG--------D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-KALLWDRL  157 (267)
Q Consensus        90 ~~l~~~gl-~P~v~~~~~--------~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~-~~~~~~~l  157 (267)
                      ++|++.|+ +|+++....        +  ..+++|++|+++...   ++..+.++|+.|++||........ .++.. .+
T Consensus        70 ~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~---~~~~~~~~g~~La~lH~~~~~~~~~~~~~~-~~  145 (322)
T 2ppq_A           70 QHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRKP---EAKHCREVGKALAAMHLASEGFEIKRPNAL-SV  145 (322)
T ss_dssp             HHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBCCSSC---CHHHHHHHHHHHHHHHHHTTTCCCCCBCTT-SH
T ss_pred             HHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeCCCcCCCCC---CHHHHHHHHHHHHHHHHHhccCCCcccCcc-Ch
Confidence            99999998 688875421        2  278999999987542   467889999999999997543221 11111 12


Q ss_pred             HHHHHHHhhccCc-ccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHH
Q 024452          158 RKWVSVAKSFCSA-KDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFK  236 (267)
Q Consensus       158 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD  236 (267)
                      ..|.....+.... ....+.....+.+.++.+.+.... ..+.++||||++++|||++++ +.++|||||+|++|++.||
T Consensus       146 ~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~-~~~~~liHgDl~~~Nil~~~~-~~~~lIDf~~a~~g~~~~D  223 (322)
T 2ppq_A          146 DGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPK-DLPAGVIHADLFQDNVFFLGD-ELSGLIDFYFACNDLLAYD  223 (322)
T ss_dssp             HHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCC-SSCEEEECSCCCGGGEEEETT-EEEEECCCTTCEEEEHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcc-cCCcccCCCCCCccCEEEeCC-ceEEEecchhccCchhHHH
Confidence            2232221111000 000011112355666667665433 578999999999999999863 4458999999999999999


Q ss_pred             HHhhhh-hheeeeccCCchhHhHHHHHHh
Q 024452          237 RACTKI-LLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       237 ~A~~~~-~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                      +|.+-. .++.............++.+|+
T Consensus       224 la~~l~~~~~~~~~~~~~~~~~~~l~~Y~  252 (322)
T 2ppq_A          224 VSICLNAWCFEKDGAYNVTKGKALLEGYQ  252 (322)
T ss_dssp             HHHHHHHHSBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            776432 1221111112334556666665

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.89  E-value=8e-22  Score=166.83  Aligned_cols=193  Identities=13%  Similarity=0.093  Sum_probs=132.6

Q ss_pred             cEEEEEec-CceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEECC----eeE
Q 024452           37 ALQVIPLK-GAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFGD----GRV  110 (267)
Q Consensus        37 ~~~i~~l~-~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~~----~~v  110 (267)
                      ...+.++. +|..|.+|++...     ++.++++|+.....  ..+..+|+++++.++..|+ +|++++...+    .+|
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~~-----~g~~~vlK~~~~~~--~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v   93 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSAQ-----GRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLL   93 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEECT-----TSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEE
T ss_pred             CCceEecccCCCCceEEEEecC-----CCCeEEEEeCCccc--chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEE
Confidence            35778886 7778999999743     24689999976542  2344689999999999898 7999988653    289


Q ss_pred             EEeecCCCCCcccCCC-hHHHHHHHHHHHhhccCCCCCCCCc-hhHHHHHHHHHHHhhccCcccccccc----hhhHHHH
Q 024452          111 EEFIHARTLSAADIRD-PKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAKEFC----LYTLKDE  184 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~-~~i~~~la~~La~lH~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~  184 (267)
                      ++|++|.++. ....+ ..+..++|+.|++||+...+..+.. .....+..+...+.......  ..+.    ...+.+.
T Consensus        94 ~e~i~G~~l~-~~~~~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  170 (264)
T 1nd4_A           94 LGEVPGQDLL-SSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQ--DDLDEEHQGLAPAEL  170 (264)
T ss_dssp             EECCSSEETT-TSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCT--TSCCGGGTTCCHHHH
T ss_pred             EEecCCcccC-cCcCCHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccc--hhhhhhccCccHHHH
Confidence            9999999885 22222 3688999999999999875332211 12222222222221111000  0110    1245666


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhh
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTK  241 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~  241 (267)
                      ++++.+.+. ...+.++||||++++|||+++ ++.++|||||+|+++++.||+|.+-
T Consensus       171 ~~~l~~~~~-~~~~~~l~HgDl~~~Nil~~~-~~~~~liD~~~a~~g~~~~Dla~~~  225 (264)
T 1nd4_A          171 FARLKARMP-DGEDLVVTHGDACLPNIMVEN-GRFSGFIDCGRLGVADRYQDIALAT  225 (264)
T ss_dssp             HHHHHHTCC-SSCCEEEECSSCCGGGEEEET-TEEEEECCCTTCEEEETHHHHHHHH
T ss_pred             HHHHHHhcC-CCCCeEEECCCCCCCcEEEEC-CcEEEEEcchhcccCChHHHHHHHH
Confidence            677776553 367899999999999999985 3445699999999999999987654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.88  E-value=1.3e-22  Score=176.91  Aligned_cols=213  Identities=12%  Similarity=0.035  Sum_probs=141.6

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHH
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFE   90 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~   90 (267)
                      +.+.+.+.++|...+|.|..       .+++++.+|.+|.+|++.         .++|+|++.... ......+|+++++
T Consensus         3 ~~~~~~l~~~l~~~~p~~~~-------~~i~~~~~G~~n~v~~v~---------~~~vlR~~~~~~-~~~~~~~E~~~l~   65 (304)
T 3sg8_A            3 TYTFDQVEKAIEQLYPDFTI-------NTIEISGEGNDCIAYEIN---------RDFIFKFPKHSR-GSTNLFNEVNILK   65 (304)
T ss_dssp             CCCHHHHHHHHHHHCTTCCC-------CCCCEEEECSSEEEEEST---------TSEEEEEESSHH-HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCccc-------eeeEecCCCCcceEEEEC---------CEEEEEecCCcc-hHHHHHHHHHHHH
Confidence            56788999999999999874       356678999999999993         689999976431 1122358999999


Q ss_pred             HHHhC-CC-CceEEEEECC-------eeEEEeecCCCCCccc---CCC---hHHHHHHHHHHHhhccCCCCCCCCc---h
Q 024452           91 CMSSQ-GQ-GPRLLGRFGD-------GRVEEFIHARTLSAAD---IRD---PKISELVAAKMREFHDLKMPGPRKA---L  152 (267)
Q Consensus        91 ~l~~~-gl-~P~v~~~~~~-------~~v~e~i~G~~l~~~~---l~~---~~i~~~la~~La~lH~~~~~~~~~~---~  152 (267)
                      .++.. ++ +|+++....+       .+||+|++|+++....   +..   ..++.++|+.|++||+.+.++....   .
T Consensus        66 ~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~  145 (304)
T 3sg8_A           66 RIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLD  145 (304)
T ss_dssp             HHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCC
T ss_pred             HHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhh
Confidence            98654 44 6999887532       2789999999887422   221   3578999999999999877543221   2


Q ss_pred             hHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccCcc
Q 024452          153 LWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFLQN  231 (267)
Q Consensus       153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~~~  231 (267)
                      .+..+......+....... ........+...++++.........+.++||||++++|||++++ ++.+.+||||+|++|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          146 FREKINEDNKKIKKLLSRE-LKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHhccc-CCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence            2222222222221111100 00111233444444422222234667899999999999999963 245789999999999


Q ss_pred             hHhHHHHhhh
Q 024452          232 MLNFKRACTK  241 (267)
Q Consensus       232 ~~~fD~A~~~  241 (267)
                      ++++|+|.+-
T Consensus       225 ~~~~Dl~~~~  234 (304)
T 3sg8_A          225 DPDNDFISLM  234 (304)
T ss_dssp             CTTHHHHTTC
T ss_pred             ChHHHHHHHH
Confidence            9999988743

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=99.88  E-value=3.8e-22  Score=176.86  Aligned_cols=210  Identities=17%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             CCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCce--eeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHH
Q 024452           10 PSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAM--TNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIR   87 (267)
Q Consensus        10 ~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~--~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~   87 (267)
                      |..+++.+.+.+.+.++-        ....++++.+|.  +|.+|+|++.      +++||+|++....   .  ..|..
T Consensus         4 p~l~~~~l~~~l~~~ygl--------~~~~~~~l~~G~g~~N~vy~v~~~------~g~~vLK~~~~~~---~--~~E~~   64 (339)
T 3i1a_A            4 QPIQAQQLIELLKVHYGI--------DIHTAQFIQGGADTNAFAYQADSE------SKSYFIKLKYGYH---D--EINLS   64 (339)
T ss_dssp             CSSCTTHHHHHHHHHHCC--------CCSEEEEETTTSCSSCEEEEEECS------SCEEEEEEEECSS---C--CHHHH
T ss_pred             CCCCHHHHHHHHHHHcCC--------CcceeEEeeccCccccceEEEEeC------CCCEEEEEecCcc---c--hHHHH
Confidence            667888899988777542        223677776665  8999999853      2499999986543   1  48999


Q ss_pred             HHHHHHhCCCC--ceEEEEEC-------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-----C-
Q 024452           88 TFECMSSQGQG--PRLLGRFG-------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-----R-  149 (267)
Q Consensus        88 ~~~~l~~~gl~--P~v~~~~~-------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-----~-  149 (267)
                      ++++|++.|++  |+++....       ++   .+++||+|+++.... .++....++|+.|++||+...+..     + 
T Consensus        65 ~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~~~~~~~-~~~~~~~~lg~~La~LH~~~~~~~~~~~~~~  143 (339)
T 3i1a_A           65 IIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPNGFTQN-LTGKQWKQLGKVLRQIHETSVPISIQQQLRK  143 (339)
T ss_dssp             HHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCCBTTTSC-CCHHHHHHHHHHHHHHHTCCCCHHHHTTSEE
T ss_pred             HHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCCcCcccC-CCHHHHHHHHHHHHHHhCcCCCCCCccCccc
Confidence            99999999975  88876421       12   789999999885433 346678999999999999976421     0 


Q ss_pred             ---CchhHHHHHHHHHHHhhccCcc----ccc-cc--c---hhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC
Q 024452          150 ---KALLWDRLRKWVSVAKSFCSAK----DAK-EF--C---LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE  216 (267)
Q Consensus       150 ---~~~~~~~l~~~~~~~~~~~~~~----~~~-~~--~---~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~  216 (267)
                         .+.....+..|...+.......    ... .+  .   +..+...++.+.+.+.....+.++||||++++|||++++
T Consensus       144 ~~~~~~w~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~N~l~~~~  223 (339)
T 3i1a_A          144 EIYSPKWREIVRSFYNQIEFDNSDDKLTAAFKSFFNQNSAAIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNE  223 (339)
T ss_dssp             CCCCCHHHHHHHHHGGGGSCCTTCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCGGGCEEECSCCCGGGEEECGG
T ss_pred             cccCcchHHHHHHHHHhhhccccCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCCCceeEeCCCCcCCEEEeCC
Confidence               1112234455543321100000    000 00  0   122333444555555544578999999999999999863


Q ss_pred             CCCEEEEeecccCcchHhHHHHhh
Q 024452          217 TSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       217 ~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                       +.++|||||+|+++++.+|+|.+
T Consensus       224 -~~~~~iD~e~~~~~~~~~Dla~~  246 (339)
T 3i1a_A          224 -ESIYIIDWDEPMLAPKERDLMFI  246 (339)
T ss_dssp             -GCEEECCCSSCEEECTHHHHTTT
T ss_pred             -CeEEEEECCCCeeCCHHHHHHHH
Confidence             57999999999999999998874

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=99.86  E-value=1.5e-21  Score=171.41  Aligned_cols=209  Identities=14%  Similarity=0.075  Sum_probs=136.1

Q ss_pred             cCCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHH
Q 024452            9 LPSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRT   88 (267)
Q Consensus         9 ~~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~   88 (267)
                      .+..+++.+.+++..+  ++..     + -++.++. |.+|.+|+|+..     ++.++|+|++.++....-....|..+
T Consensus         8 ~~~l~~~~i~~~l~~~--g~~~-----~-~~~~~l~-g~~n~~y~v~~~-----~g~~~vlK~~~~~~~~~~~~~~E~~~   73 (328)
T 1zyl_A            8 FQTLHPDTIMDALFEH--GIRV-----D-SGLTPLN-SYENRVYQFQDE-----DRRRFVVKFYRPERWTADQILEEHQF   73 (328)
T ss_dssp             CCCCCHHHHHHHHHHT--TCCC-----C-SCCEEEC-CSSSEEEEECCT-----TCCCEEEEEECTTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHc--CCCC-----C-ceEEeec-CcccceEEEEcC-----CCCEEEEEEcCCCCCCHHHHHHHHHH
Confidence            4567788999999655  3331     1 2456676 889999999743     24589999987542111122479999


Q ss_pred             HHHHHhCCC-CceEEEEEC------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC--CCchhHHH
Q 024452           89 FECMSSQGQ-GPRLLGRFG------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP--RKALLWDR  156 (267)
Q Consensus        89 ~~~l~~~gl-~P~v~~~~~------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~--~~~~~~~~  156 (267)
                      +++|++.|+ +|+++....      +|   .+++|++|+++..   .+++...++|+.|++||+...+..  ..+. + .
T Consensus        74 ~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~---~~~~~~~~~g~~La~lH~~~~~~~~~~~~~-~-~  148 (328)
T 1zyl_A           74 ALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEA---DNIDQMEAVGRYLGRMHQTGRKQLFIHRPT-I-G  148 (328)
T ss_dssp             HHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCS---SCHHHHHHHHHHHHHHHHHHTSSCCSSSCB-C-S
T ss_pred             HHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHHhhccCCCccCCC-C-C
Confidence            999999998 688776511      11   5899999987663   356778999999999999765322  1111 0 1


Q ss_pred             HHHHHH----HHhhc-cCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          157 LRKWVS----VAKSF-CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       157 l~~~~~----~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      +..|..    .+... ..+.+........+...++.+++.+.. ..+.++||||++++|||++ +  .++|||||+|++|
T Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~HgD~~~~Nil~~-~--~~~lIDfe~a~~g  224 (328)
T 1zyl_A          149 LNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWRE-DFTVLRLHGDCHAGNILWR-D--GPMFVDLDDARNG  224 (328)
T ss_dssp             HHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCS-CSCCEECCSSCSGGGEEES-S--SEEECCCTTCCEE
T ss_pred             HHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHhhh-cCCeeeeeCCCCcccEeEc-C--CCEEEECCCCCcC
Confidence            112211    11110 000000000012334445566665543 4678999999999999998 3  7999999999999


Q ss_pred             hHhHHHHhh
Q 024452          232 MLNFKRACT  240 (267)
Q Consensus       232 ~~~fD~A~~  240 (267)
                      ++.||+|.+
T Consensus       225 ~~~~Dla~~  233 (328)
T 1zyl_A          225 PAVQDLWML  233 (328)
T ss_dssp             CTTHHHHTT
T ss_pred             cHHHHHHHH
Confidence            999998864

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=99.86  E-value=2.1e-21  Score=165.95  Aligned_cols=195  Identities=14%  Similarity=0.027  Sum_probs=128.4

Q ss_pred             EEEEEecCceee-eeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           38 LQVIPLKGAMTN-EVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N-~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      .+++++++|.+| .+|+++...    ++..+|+|+...+....  ..+|++++++|+....+|++++...  +.  +|++
T Consensus        27 ~~~~~~~~G~S~~~v~rl~~~~----~~~~~~lk~~~~~~~~~--~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme  100 (272)
T 4gkh_A           27 YRWARDNVGQSGATIYRLYGKP----NAPELFLKHGKGSVAND--VTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTT  100 (272)
T ss_dssp             CEEEEEECSSSSCEEEEEECCT----TCCCEEEEEEETHHHHH--HHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             CeEEEccCCCcCCeEEEEEecC----CCeEEEEEECCCCCHhH--HHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEE
Confidence            578889999999 589997532    35789999976554332  3589999999987545799998764  22  8999


Q ss_pred             eecCCCCCcc----cCCChHHHHHHHHHHHhhccCCCCCCCCch-hHHHHHHHHHHHhhccCc-ccc-cccchhhHHHHH
Q 024452          113 FIHARTLSAA----DIRDPKISELVAAKMREFHDLKMPGPRKAL-LWDRLRKWVSVAKSFCSA-KDA-KEFCLYTLKDEI  185 (267)
Q Consensus       113 ~i~G~~l~~~----~l~~~~i~~~la~~La~lH~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~  185 (267)
                      +|+|+++...    .-....+..++|+.|++||+.+.+...... .......+.......... ... .......+....
T Consensus       101 ~l~G~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (272)
T 4gkh_A          101 AIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVW  180 (272)
T ss_dssp             CCCSEEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHH
T ss_pred             eeCCccccccccCCHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHH
Confidence            9999876431    111235788999999999998764322111 111222222221111110 000 111123344444


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      ..+.... ....+.++||||++++|||+++ ++.++|||||.|++|++.+|+|.+
T Consensus       181 ~~l~~~~-~~~~~~~l~HGDl~~~Nil~~~-~~~~~viDwe~a~~gdp~~Dla~~  233 (272)
T 4gkh_A          181 KEMHKLL-PFSPDSVVTHGDFSLDNLIFDE-GKLIGCIDVGRVGIADRYQDLAIL  233 (272)
T ss_dssp             HHHHTTC-CCCCCEEEECSCCCTTSEEEET-TEEEEECCCTTCEEEETHHHHHHH
T ss_pred             HHHHhcc-cccCCcEEEcCCCCCCeEEEEC-CeEEEEEECcccccCCHHHHHHHH
Confidence            5555443 3456899999999999999996 355679999999999999998764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=99.86  E-value=8.4e-22  Score=172.19  Aligned_cols=210  Identities=11%  Similarity=0.008  Sum_probs=136.6

Q ss_pred             ChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHH
Q 024452           13 SPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM   92 (267)
Q Consensus        13 ~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l   92 (267)
                      +.+.+.+++.+.+|.+..       ..+.++++|.+|.+|++         ++++|+|++... .......+|+++++.|
T Consensus         4 ~~~~l~~~l~~~~p~~~~-------~~v~~l~~G~~n~v~~v---------g~~~VlR~~~~~-~~~~~~~~E~~~L~~L   66 (306)
T 3tdw_A            4 NKLHYTTMIMTQFPDISI-------QSVESLGEGFRNYAILV---------NGDWVFRFPKSQ-QGADELNKEIQLLPLL   66 (306)
T ss_dssp             CHHHHHHHHHHHCTTSCC-------SCEEEEEECSSEEEEEE---------TTTEEEEEESSH-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCc-------eeeeecCCCcceeEEEE---------CCEEEEEecCCc-hHHHHHHHHHHHHHHH
Confidence            456789999999998763       36778899999999999         268999997432 1122346899999999


Q ss_pred             HhC-CC-CceEEEEEC--Ce---eEEEeecCCCCCccc---CC---ChHHHHHHHHHHHhhccCCCCC-----CCCchhH
Q 024452           93 SSQ-GQ-GPRLLGRFG--DG---RVEEFIHARTLSAAD---IR---DPKISELVAAKMREFHDLKMPG-----PRKALLW  154 (267)
Q Consensus        93 ~~~-gl-~P~v~~~~~--~~---~v~e~i~G~~l~~~~---l~---~~~i~~~la~~La~lH~~~~~~-----~~~~~~~  154 (267)
                      ++. ++ +|+++....  +|   ++++||+|+++....   +.   ...+..++|+.|++||+.+.+.     .+.....
T Consensus        67 ~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~  146 (306)
T 3tdw_A           67 VGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLK  146 (306)
T ss_dssp             TTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHH
T ss_pred             HhcCCCCCCCeEeecccCCCceEEEEeccCCeECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHH
Confidence            885 44 599888763  22   899999999886522   22   1346889999999999987531     1111112


Q ss_pred             HHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeC---CCCCEEEEeecccCcc
Q 024452          155 DRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE---ETSSITIIVSFTFLQN  231 (267)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~---~~~~v~lIDwE~a~~~  231 (267)
                      ..+..+.+.+.....+. ........+...++.+.+.......+.++||||++++|||+++   +++.++|||||++++|
T Consensus       147 ~~~~~~~~~~~~~~~~~-l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          147 NKILLLSEAVEDQVFPL-LDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            22222322222111100 0000112333333222221001247889999999999999986   2233589999999999


Q ss_pred             hHhHHHHhh
Q 024452          232 MLNFKRACT  240 (267)
Q Consensus       232 ~~~fD~A~~  240 (267)
                      ++++|+|.+
T Consensus       226 d~~~Dla~~  234 (306)
T 3tdw_A          226 DPDYDYVYL  234 (306)
T ss_dssp             CGGGGGHHH
T ss_pred             CHHHHHHHH
Confidence            999998763

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=3.2e-21  Score=169.71  Aligned_cols=215  Identities=15%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEE--------EC
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGR--------FG  106 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~--------~~  106 (267)
                      ...+++++++|.+|.+|+|.+.      ++.+++|++......   ...|..++++|++.|+ +|+++..        ..
T Consensus        33 ~~~~~~~l~gG~~n~~~~v~~~------~~~~vlk~~~~~~~~---~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~  103 (346)
T 2q83_A           33 QAEKIDVIQGNQMALVWKVHTD------SGAVCLKRIHRPEKK---ALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHG  103 (346)
T ss_dssp             CCCEEEECC----CEEEEEEET------TEEEEEEEECSCHHH---HHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEET
T ss_pred             ceEEeeeccccccCcEEEEEeC------CCCEEEEecCCCHHH---HHHHHHHHHHHHHcCCCCCceeecCCCCEEEEEC
Confidence            3468899999999999999863      357999998753211   2368899999999997 4888762        22


Q ss_pred             Ce--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCC--C--C-----CchhHHH-------HHHHHHHHhhcc
Q 024452          107 DG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPG--P--R-----KALLWDR-------LRKWVSVAKSFC  168 (267)
Q Consensus       107 ~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~--~--~-----~~~~~~~-------l~~~~~~~~~~~  168 (267)
                      +.  .+++|++|+++..   .++..+.++|+.|++||+.....  +  .     .......       +..+.+.+....
T Consensus       104 ~~~~~l~~~i~G~~~~~---~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (346)
T 2q83_A          104 SFLFVVYDWIEGRPFEL---TVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEK  180 (346)
T ss_dssp             TEEEEEEECCCCBCCCT---TSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEEEEeecCccCCC---CCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            22  8899999988763   35667899999999999875422  1  0     0111111       111211111100


Q ss_pred             Ccccccc-c--chh----hHHHHHHHHHH----hCC-CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHH
Q 024452          169 SAKDAKE-F--CLY----TLKDEISMLEK----ELP-NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFK  236 (267)
Q Consensus       169 ~~~~~~~-~--~~~----~l~~~~~~l~~----~l~-~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD  236 (267)
                      . ..... +  .+.    .+...++.+.+    .+. ....+.++||||++++|||+++ ++.++|||||+|++|++.+|
T Consensus       181 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~-~~~~~lIDfe~a~~g~~~~D  258 (346)
T 2q83_A          181 E-DPFSQLYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGE-NEQIWVIDLDTVSFDLPIRD  258 (346)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECG-GGCEEECCCTTCEECCTHHH
T ss_pred             C-CcHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeC-CCcEEEEehhhcccCChHHH
Confidence            0 00000 0  011    12223333332    000 0125689999999999999975 35799999999999999999


Q ss_pred             HHhhhhhheeeeccCCchhHhHHHHHHh
Q 024452          237 RACTKILLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       237 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                      +|.+-...+.....-.......++.+|+
T Consensus       259 la~~l~~~~~~~~~~~~~~~~~~l~~Y~  286 (346)
T 2q83_A          259 LRKMIIPLLDTTGVWDDETFNVMLNAYE  286 (346)
T ss_dssp             HHHHHHHHTCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence            8775333321101112233455666665

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.85  E-value=1.4e-20  Score=160.07  Aligned_cols=193  Identities=17%  Similarity=0.156  Sum_probs=125.6

Q ss_pred             EEEEe-cCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEE
Q 024452           39 QVIPL-KGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEE  112 (267)
Q Consensus        39 ~i~~l-~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e  112 (267)
                      ++.+. .+|-.|.+|++...      ++.+++|+..... ....+..+|+++++.|++...+|+++....+  .  +|++
T Consensus        17 ~~~~~~~g~s~~~v~~~~~~------~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e   90 (263)
T 3tm0_A           17 RCVKDTEGMSPAKVYKLVGE------NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS   90 (263)
T ss_dssp             EEEECCSCCSSSEEEEEECS------SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             eeEeeccCCCCCeEEEEECC------CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence            45555 44556899999742      4799999976421 1112336899999999885568999987642  2  8999


Q ss_pred             eecCCCCCcc--cCCC-hHHHHHHHHHHHhhccCCCCCCCC-chhHHHHHHHHHHHhhccCcccc----cccchhhHHHH
Q 024452          113 FIHARTLSAA--DIRD-PKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSFCSAKDA----KEFCLYTLKDE  184 (267)
Q Consensus       113 ~i~G~~l~~~--~l~~-~~i~~~la~~La~lH~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~  184 (267)
                      |++|.++...  ...+ ..++.++|+.|++||+++.+.... ......+..+...........+.    .........+.
T Consensus        91 ~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (263)
T 3tm0_A           91 EADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPREL  170 (263)
T ss_dssp             CCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHH
T ss_pred             ecCCeehhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHH
Confidence            9999987542  1223 357899999999999976643321 11222222222211111100000    00112345556


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      ++.+.....  ..+.++||||++++|||+++ ++.++|||||+|++|++.||+|.+
T Consensus       171 ~~~l~~~~~--~~~~~l~HgDl~~~Nil~~~-~~~~~lIDwe~a~~gd~~~Dla~~  223 (263)
T 3tm0_A          171 YDFLKTEKP--EEELVFSHGDLGDSNIFVKD-GKVSGFIDLGRSGRADKWYDIAFC  223 (263)
T ss_dssp             HHHHHHCCC--CCCEEEECSSCCTTSEEEET-TEEEEECCCTTCEEEEHHHHHHHH
T ss_pred             HHHHHhcCC--CCCceEECCCCCcCcEEEEC-CcEEEEEEchhcccCCHHHHHHHH
Confidence            666765533  47899999999999999985 344679999999999999998765

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=99.83  E-value=2.7e-20  Score=163.00  Aligned_cols=205  Identities=13%  Similarity=0.073  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH
Q 024452           14 PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS   93 (267)
Q Consensus        14 ~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~   93 (267)
                      .+.+.+.+.+.++. .     ....+++++++|.+|.+|+|+..      +++||+|++.......+  ..|+++++.|+
T Consensus        21 ~~~l~~~L~~~lg~-~-----~~i~~~~~l~gG~~n~~y~v~~~------~~~~vlK~~~~~~~~~~--~~E~~~L~~L~   86 (312)
T 3jr1_A           21 WKSISQVLAEQFGA-Y-----YFIKHKEKLYSGEMNEIWLINDE------VQTVFVKINERSYRSMF--RAEADQLALLA   86 (312)
T ss_dssp             HHHHHHHHHHHHSS-C-----CCCCEEEEECCSSSSEEEEEESS------SCEEEEEEEEGGGHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-C-----cceeeeEEeCCccceeeeEEEEC------CCeEEEEeCCcccHHHH--HHHHHHHHHHH
Confidence            35677777777643 1     13568999999999999999842      47999999764432222  58999999999


Q ss_pred             hC-CC-CceEEEEECC----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCC-C-CC----------CCch-hH
Q 024452           94 SQ-GQ-GPRLLGRFGD----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM-P-GP----------RKAL-LW  154 (267)
Q Consensus        94 ~~-gl-~P~v~~~~~~----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~-~-~~----------~~~~-~~  154 (267)
                      +. ++ +|+++.....    .+|++||+|.+.+.      ....++|+.||+||+... + +.          ++.+ ..
T Consensus        87 ~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~~------~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~  160 (312)
T 3jr1_A           87 KTNSINVPLVYGIGNSQGHSFLLLEALNKSKNKQ------SSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQ  160 (312)
T ss_dssp             HTTSSBCCCEEEEEECSSEEEEEEECCCCCCCCT------THHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCB
T ss_pred             hhCCCCcceEEEEeecCCceEEEEEeccCCCCCc------hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCc
Confidence            87 44 7999988642    28999999987653      357899999999999865 2 10          0011 11


Q ss_pred             HHHHHHHHHH--hhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          155 DRLRKWVSVA--KSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       155 ~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                      +.|..|+...  ................++..++++.+.+.....++++||||++++|++++++ + +.|||| .|.+|+
T Consensus       161 ~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~-~-~~~iD~-~~~~g~  237 (312)
T 3jr1_A          161 TSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDD-K-IFVCNP-ACYWGD  237 (312)
T ss_dssp             SCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETT-E-EEECSC-CCEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCC-C-eEEEcC-ccccCC
Confidence            2344443211  0000000000011134555566666666444567899999999999999974 4 899998 588999


Q ss_pred             HhHHHHhhh
Q 024452          233 LNFKRACTK  241 (267)
Q Consensus       233 ~~fD~A~~~  241 (267)
                      +++|+|.+.
T Consensus       238 ~~~Dl~~~~  246 (312)
T 3jr1_A          238 RECDIAFSS  246 (312)
T ss_dssp             THHHHHHHT
T ss_pred             hHHHHHHHH
Confidence            999988753

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=99.82  E-value=3.3e-19  Score=157.06  Aligned_cols=204  Identities=10%  Similarity=0.101  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeee-eEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH
Q 024452           15 EELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNE-VYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS   93 (267)
Q Consensus        15 ~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~-vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~   93 (267)
                      +.+..++...  +|.       ..++++++||.+|. +|+++..     +++++|+|...+...  .+...|++++++|+
T Consensus         7 ~~l~~~l~~~--~~~-------~~~~~~l~gg~s~~~~~r~~~~-----~~~~~vlk~~~~~~~--~~~~~e~~~l~~L~   70 (333)
T 3csv_A            7 DEIRDFLATH--GYA-------DWNRTPLAGDASSRRYQRLRSP-----TGAKAVLMDWSPEEG--GDTQPFVDLAQYLR   70 (333)
T ss_dssp             HHHHHHHHHT--TCT-------TCEECC--------CCEEEECT-----TCCEEEEEECCTTTT--CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCC-------CceeeECCCCCCCceEEEEEcC-----CCCeEEEEECCCCCC--ccccHHHHHHHHHH
Confidence            4566677665  333       36889999999997 6788742     147899998655431  23358999999999


Q ss_pred             hCCC-CceEEEEEC-Ce-eEEEeecCCCCCc----ccCCChHHHHHHHHHHHhhccCCCCCCCCc--hhH-H---HHHHH
Q 024452           94 SQGQ-GPRLLGRFG-DG-RVEEFIHARTLSA----ADIRDPKISELVAAKMREFHDLKMPGPRKA--LLW-D---RLRKW  160 (267)
Q Consensus        94 ~~gl-~P~v~~~~~-~~-~v~e~i~G~~l~~----~~l~~~~i~~~la~~La~lH~~~~~~~~~~--~~~-~---~l~~~  160 (267)
                      +.|+ +|+++..+. +| +++++++|.++..    .....+..+.++|+.|++||+...+.-...  ... .   .+..|
T Consensus        71 ~~g~~vP~v~~~d~~~g~ll~e~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~  150 (333)
T 3csv_A           71 NLDISAPEIYAEEHARGLLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSE  150 (333)
T ss_dssp             HTTCBCCCEEEEETTTTEEEECCCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHT
T ss_pred             hCCCCCCceeeecCCCCEEEEeeCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHH
Confidence            9998 699999864 45 8899998865532    111113578899999999999876521111  111 1   12223


Q ss_pred             HHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCC---CCCEEEEeecccCcchHhHHH
Q 024452          161 VSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE---TSSITIIVSFTFLQNMLNFKR  237 (267)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~---~~~v~lIDwE~a~~~~~~fD~  237 (267)
                      +.. ..+....   ......+...++.+.+.+.  ..+.++||||+|++|||++++   .+.++||||++|++|++.||+
T Consensus       151 ~~~-~~l~~~~---~~~~~~l~~~~~~l~~~~~--~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~~~DL  224 (333)
T 3csv_A          151 YRY-AILGDAA---EDNRKRFEHRFAQILSAQL--EGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRAYDL  224 (333)
T ss_dssp             HHH-HHHSSCC---HHHHHHHHHHHHHHHHHHC--CSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECTTHHH
T ss_pred             HHH-HhcCCCc---HHHHHHHHHHHHHHHHhcc--cCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCCHHHH
Confidence            221 0111000   0012334445555554432  357899999999999999863   146899999999999999998


Q ss_pred             Hhh
Q 024452          238 ACT  240 (267)
Q Consensus       238 A~~  240 (267)
                      |++
T Consensus       225 a~l  227 (333)
T 3csv_A          225 VSL  227 (333)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=99.81  E-value=3.8e-19  Score=160.41  Aligned_cols=218  Identities=14%  Similarity=0.083  Sum_probs=132.0

Q ss_pred             CCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-------ccccCh
Q 024452           10 PSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-------EVFFNR   82 (267)
Q Consensus        10 ~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-------~~~~dr   82 (267)
                      -..+++.+.+++... +.+.+    ....+++++++|.+|.+|+++...    .+.++++|...+..       ....+|
T Consensus        10 ~~l~~~~v~~~l~~~-~~~~~----~~~~~~~~lg~G~~n~vyrv~~~~----~~~~~vvK~~~~~~r~~~~~~~~~~~r   80 (397)
T 2olc_A           10 ETLNESSAVALAVKL-GLFPS----KSTLTCQEIGDGNLNYVFHIYDQE----HDRALIIKQAVPYAKVVGESWPLTIDR   80 (397)
T ss_dssp             CCCCHHHHHHHHHHT-TC---------CCEEEECCSSSSEEEEEEEC--------CEEEEEEECCC-------CCCCTTH
T ss_pred             ccCCHHHHHHHHHhc-CcCCC----CCceEEEECCCCceEEEEEEEECC----CCcEEEEEecchhhcccCCCCcCcHHH
Confidence            346778999999843 44432    234789999999999999996432    24789999754321       122344


Q ss_pred             -HHHHHHHHHHHhC--CCCceEEEEECCe--eEEEeecCCCCCc----ccCCChHHHHHHHHHHHhhccCCCCCCCCch-
Q 024452           83 -DDEIRTFECMSSQ--GQGPRLLGRFGDG--RVEEFIHARTLSA----ADIRDPKISELVAAKMREFHDLKMPGPRKAL-  152 (267)
Q Consensus        83 -~~E~~~~~~l~~~--gl~P~v~~~~~~~--~v~e~i~G~~l~~----~~l~~~~i~~~la~~La~lH~~~~~~~~~~~-  152 (267)
                       ..|.++++.+++.  +.+|++++.+++.  +|+||++|...-.    .....+..+..+|+.|+++|....+...... 
T Consensus        81 ~~~E~~~L~~l~~~~~~~vP~~~~~d~~~~~lvmE~l~g~~~~~~~l~~~~~~~~~~~~l~~~La~lH~~~~~~~~~~~~  160 (397)
T 2olc_A           81 ARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKV  160 (397)
T ss_dssp             HHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHTTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHH
T ss_pred             HHHHHHHHHHhhhhCCCCcCeEEEEcCCccEEEEEeCCCcchHHHHHhcCCcCHHHHHHHHHHHHHHhhhcccccCChHH
Confidence             5799999999875  4679999887643  8999999853321    1122456789999999999954332111100 


Q ss_pred             ---hHH-----HHHHHHHHHh---hccCc--ccc-ccc--------chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCC
Q 024452          153 ---LWD-----RLRKWVSVAK---SFCSA--KDA-KEF--------CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGN  210 (267)
Q Consensus       153 ---~~~-----~l~~~~~~~~---~~~~~--~~~-~~~--------~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~N  210 (267)
                         ...     .+..+.....   .....  ... ..+        ....+...+..+...+.  ..+.++||||+|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~~~~~l~~~~~--~~~~~L~HGDl~~~N  238 (397)
T 2olc_A          161 KKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFL--TSAETLIHGDLHTGS  238 (397)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHH--HBCCEEECSCCSGGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHhcccchhhhccccCCHhHHHHHHHhccCHHHHHHHHHHHHHhc--cCCCceeeCCCCcCc
Confidence               011     0111111000   00000  000 000        01123334444443322  246799999999999


Q ss_pred             eeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          211 IMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       211 ilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      ||++++  .+.+||||+|.+|+++||++.+
T Consensus       239 il~~~~--~~~lID~e~a~~G~p~~DLa~~  266 (397)
T 2olc_A          239 IFASEH--ETKVIDPEFAFYGPIGFDVGQF  266 (397)
T ss_dssp             EEECSS--CEEECCCTTCEEECTHHHHHHH
T ss_pred             EEEeCC--CeEEEeCcccccCChHHhHHHH
Confidence            999863  5899999999999999997764

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=99.80  E-value=4e-19  Score=161.64  Aligned_cols=238  Identities=13%  Similarity=0.091  Sum_probs=140.9

Q ss_pred             CCChHHHHHHHH---H---hCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCC-------Ccc
Q 024452           11 SSSPEELKKVLQ---S---VASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGE-------GVE   77 (267)
Q Consensus        11 ~~~~~~~~~l~~---~---~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~-------~~~   77 (267)
                      ..+++.+.++++   .   ++|.|..    ...++++++.+|.+|.+|+|..      ++.++|+|...+       ...
T Consensus         8 ~l~~~~~~~yl~~~~~~~~~~~~~~~----~~~~~i~~l~~G~~n~vyrv~~------~~~~~vvK~~~p~~~~~~~~~~   77 (420)
T 2pyw_A            8 PLNEKSLVDYIKSTPALSSKIGADKS----DDDLVIKEVGDGNLNFVFIVVG------SSGSLVIKQALPYIRCIGESWP   77 (420)
T ss_dssp             CCCTTHHHHHHHTCHHHHHHHTTTTC----CCCCEEEECCCSSSCEEEEEEC------SSCEEEEEECCSBCTTTCTTSB
T ss_pred             cCChhhHHHHHhchhhhhhhcCCccc----ccceEEEEccCCCcEEEEEEEc------CCceEEEEECchhhcccCcccc
Confidence            346678888887   2   4566611    0237899999999999999963      247899994321       111


Q ss_pred             cccCh-HHHHHHHHHHHhC--CCCceEEEEECC--eeEEEee-cCC-CCCc---ccCCChHHHHHHHHHHHhhccCCCCC
Q 024452           78 VFFNR-DDEIRTFECMSSQ--GQGPRLLGRFGD--GRVEEFI-HAR-TLSA---ADIRDPKISELVAAKMREFHDLKMPG  147 (267)
Q Consensus        78 ~~~dr-~~E~~~~~~l~~~--gl~P~v~~~~~~--~~v~e~i-~G~-~l~~---~~l~~~~i~~~la~~La~lH~~~~~~  147 (267)
                      ...++ ..|.+++..++..  ..+|++++.+++  .+|++|+ +|. .+..   .....+..+..+|+.|++||......
T Consensus        78 ~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~~~~~~lv~e~l~~g~~~l~~~l~~~~~~~~~~~~lg~~La~lH~~~~~~  157 (420)
T 2pyw_A           78 MTKERAYFEATTLRKHGNLSPDHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYPFLADHMSDYMAKTLFFTSLL  157 (420)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSGGGSCCEEEEETTTTEEEECCCCTTCEEHHHHHHHTCCCTTHHHHHHHHHHHHHHTTSTT
T ss_pred             cchhHHHHHHHHHHHHHhhCCCCCCeEEEECCCccEEEEeecCCcchhHHHHHhcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            11233 3577777777654  357999998853  3899999 883 2211   11234567899999999999886532


Q ss_pred             CCCch----h---H---HHHHHHHHHHhh---ccCc--ccc--ccc--------chhhHHHHHHHHHHhCCCCCCcEEEE
Q 024452          148 PRKAL----L---W---DRLRKWVSVAKS---FCSA--KDA--KEF--------CLYTLKDEISMLEKELPNDHQEIGFC  202 (267)
Q Consensus       148 ~~~~~----~---~---~~l~~~~~~~~~---~~~~--~~~--~~~--------~~~~l~~~~~~l~~~l~~~~~~~~l~  202 (267)
                      ...+.    .   +   ..+.+..+....   ....  ...  ..+        ....+...++.+...+.  ..+.++|
T Consensus       158 ~~~~~~~~~~~~~fg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~~~~~l~~~~~--~~~~~li  235 (420)
T 2pyw_A          158 YHDTTEHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNRWTSPYLDDDAKAVREDSALKLEIAELKSMFC--ERAQALI  235 (420)
T ss_dssp             TSCHHHHHHHHHHHGGGHHHHHHHHHHTTTGGGSCCTTCCCSTTTTHHHHHHHTTCHHHHHHHHHHHHHHH--HBCCEEE
T ss_pred             ccChhhhHHHHHhcCCCHHHHHhhhhhcccccccccccccCCcHhHHHHHHHhhcCHHHHHHHHHHHHHHh--cCCCeEE
Confidence            21110    0   0   001111011000   0000  000  000        01223444555554432  2578999


Q ss_pred             ccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhh-hhheeeecc-------CCchhHhHHHHH
Q 024452          203 HNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTK-ILLILTFSV-------NSPMVCMRWLRI  262 (267)
Q Consensus       203 H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~-~~~~~~~~~-------~~~~~~~~~~~~  262 (267)
                      |||+|++|||++++  .+.|||||+|++|+++||++.+- ..++.+++.       ........|+..
T Consensus       236 HGDl~~~Nil~~~~--~~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (420)
T 2pyw_A          236 HGDLHTGSVMVTQD--STQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILR  301 (420)
T ss_dssp             CSCCSGGGEEECSS--CEEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHH
T ss_pred             ecCCCCCcEEEeCC--CCEEEeCcccccCchHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence            99999999999863  49999999999999999976532 223333331       234456667643

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=99.79  E-value=7.3e-18  Score=145.63  Aligned_cols=189  Identities=12%  Similarity=0.103  Sum_probs=125.3

Q ss_pred             CcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhC-CC-CceEEEEECCeeEEE
Q 024452           36 DALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQ-GQ-GPRLLGRFGDGRVEE  112 (267)
Q Consensus        36 ~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~-gl-~P~v~~~~~~~~v~e  112 (267)
                      +...++++++|..|.+|+|++.     +++++|+|++..+.....+ -+.|+++++.|++. ++ +|++++.+.+..+++
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~-----DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~~~~lv~e   90 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELA-----DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWDDRTLAME   90 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEET-----TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEecCCCCCeEEEEEEEC-----CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEeccCceEEEE
Confidence            4578999999999999999975     3579999997554322111 15899999999876 44 699999988889999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-----------CCch-hHHHHHHH---------HHHHhhccCcc
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-----------RKAL-LWDRLRKW---------VSVAKSFCSAK  171 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-----------~~~~-~~~~l~~~---------~~~~~~~~~~~  171 (267)
                      |+++...+      +....++|+.|+++|....+.-           ...+ ....+..+         .........  
T Consensus        91 ~l~~~~~~------~~~~~~lg~~La~lH~~~~~~fg~~~~~~~g~~~~~~~~~~~w~~~~~~~rl~~~~~~~~~~~~--  162 (288)
T 3f7w_A           91 WVDERPPT------PEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGA--  162 (288)
T ss_dssp             CCCCCCCC------HHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTS--
T ss_pred             eecccCCC------hHHHHHHHHHHHhhhhccccccccccccccccccccCcccccchhhhHHhhHHHHHHHHHhccC--
Confidence            99987654      3456789999999999865310           0000 00111111         111111100  


Q ss_pred             cccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhh
Q 024452          172 DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKI  242 (267)
Q Consensus       172 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~  242 (267)
                       ........++...+++...+. ...+++++|||+++||++++++  ...+|| ..|.+|++++|+|.+..
T Consensus       163 -~~~~~~~~~e~l~~~L~~~~~-~~~~p~LvHGDlw~gNvl~~~~--g~~~iD-p~~~~g~~e~Dla~~~~  228 (288)
T 3f7w_A          163 -LTPGDVRLVEKVLDALDHLAG-DPEPPARIHGDLWNGNVLWQDD--GAVVID-PAAHGGHREADLAMLAL  228 (288)
T ss_dssp             -SCHHHHHHHHHHHHTHHHHTC-SCCCCEEECSCCSGGGEEEETT--EEEECS-CCCEEECHHHHHHHHHH
T ss_pred             -cchhhhHHHHHHHHHHHHhcc-cCCCCeeeecCCCCCcEEEcCC--CeEEEe-cccccCCHHHHHHHHHh
Confidence             000112334444455555443 3456899999999999999974  467787 45789999999987654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.86  E-value=1.2e-08  Score=86.28  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCce--EEEEEcCCCccccc-------------------------ChHHHHHHHHHH
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARN--VLVRIYGEGVEVFF-------------------------NRDDEIRTFECM   92 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~--~vlRi~~~~~~~~~-------------------------dr~~E~~~~~~l   92 (267)
                      ..+|..|-.+.||++....    ++..  +++|++......+.                         ...+|+.+++.+
T Consensus        52 ~~~ig~G~~g~Vy~a~~~~----~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           52 GGVISTGKEANVFYADGVF----DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEECSSEEEEEEEEEE----TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeecceEEEEEEEEcC----CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            4567888889999997521    2467  99998754321110                         125799999999


Q ss_pred             HhCCC-CceEEEEECCeeEEEeec
Q 024452           93 SSQGQ-GPRLLGRFGDGRVEEFIH  115 (267)
Q Consensus        93 ~~~gl-~P~v~~~~~~~~v~e~i~  115 (267)
                      ...|+ .|.++......+||||+.
T Consensus       128 ~~~~i~~p~~~~~~~~~lVmE~~g  151 (258)
T 1zth_A          128 KEAGVSVPQPYTYMKNVLLMEFIG  151 (258)
T ss_dssp             HHTTCCCCCEEEEETTEEEEECCE
T ss_pred             HhCCCCCCeEEEcCCCEEEEEecC
Confidence            98886 699988766669999994

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.79  E-value=6.4e-08  Score=86.65  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=55.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc---------c-C-------------hHHHHHHHHHHHhCC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF---------F-N-------------RDDEIRTFECMSSQG   96 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~---------~-d-------------r~~E~~~~~~l~~~g   96 (267)
                      ..+|+.|-...||++...     ++..+.+|++..+...+         . .             ..+|+..+..+...|
T Consensus       100 ~~~IG~Gk~a~VY~a~d~-----~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A          100 GSRIGVGKESDIMIVADE-----KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             EEEEEECSSEEEEEEECT-----TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCEeeeCCceEEEEEECC-----CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356777778999999743     35789999986432110         0 0             125788888898888


Q ss_pred             C-CceEEEEECCeeEEEeecCCCCC
Q 024452           97 Q-GPRLLGRFGDGRVEEFIHARTLS  120 (267)
Q Consensus        97 l-~P~v~~~~~~~~v~e~i~G~~l~  120 (267)
                      + +|+++......+||||++|.++.
T Consensus       175 v~vp~p~~~~~~~LVME~i~G~~L~  199 (397)
T 4gyi_A          175 FPVPEPIAQSRHTIVMSLVDALPMR  199 (397)
T ss_dssp             CSCCCEEEEETTEEEEECCSCEEGG
T ss_pred             CCCCeeeeccCceEEEEecCCccHh
Confidence            6 69999888777999999997663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.62  E-value=4.7e-07  Score=77.57  Aligned_cols=127  Identities=18%  Similarity=0.224  Sum_probs=81.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-------------------cChHHHHHHHHHHHhCCCCceE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-------------------FNRDDEIRTFECMSSQGQGPRL  101 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-------------------~dr~~E~~~~~~l~~~gl~P~v  101 (267)
                      ..|..|-...||++...     ++..+++|+...+...+                   ....+|+++++.+. +--.|.+
T Consensus        96 ~~iG~G~~g~Vy~~~~~-----~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-~~~v~~~  169 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-GLAVPKV  169 (282)
T ss_dssp             EEEEECSSEEEEEEEET-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-TSSSCCE
T ss_pred             CEeccCCCceEEEEEeC-----CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-CCCcCeE
Confidence            57788888999999862     35789999986432111                   01247999999998 4224666


Q ss_pred             EEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhH
Q 024452          102 LGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTL  181 (267)
Q Consensus       102 ~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  181 (267)
                      +....-.+|+||++|.++..  +..                      .  ..    ..+..                 .+
T Consensus       170 ~~~~~~~lvmE~~~g~~L~~--l~~----------------------~--~~----~~i~~-----------------qi  202 (282)
T 1zar_A          170 YAWEGNAVLMELIDAKELYR--VRV----------------------E--NP----DEVLD-----------------MI  202 (282)
T ss_dssp             EEEETTEEEEECCCCEEGGG--CCC----------------------S--CH----HHHHH-----------------HH
T ss_pred             EeccceEEEEEecCCCcHHH--cch----------------------h--hH----HHHHH-----------------HH
Confidence            65544559999999987764  210                      0  00    01111                 12


Q ss_pred             HHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          182 KDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       182 ~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ...+..+-+        ..++|+|++|.|||++ + +.+.|+||..|..
T Consensus       203 ~~~l~~lH~--------~giiHrDlkp~NILl~-~-~~vkl~DFG~a~~  241 (282)
T 1zar_A          203 LEEVAKFYH--------RGIVHGDLSQYNVLVS-E-EGIWIIDFPQSVE  241 (282)
T ss_dssp             HHHHHHHHH--------TTEECSCCSTTSEEEE-T-TEEEECCCTTCEE
T ss_pred             HHHHHHHHH--------CCCEeCCCCHHHEEEE-C-CcEEEEECCCCeE
Confidence            222333322        2399999999999999 4 6899999998863

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.57  E-value=2.6e-07  Score=83.71  Aligned_cols=137  Identities=14%  Similarity=0.126  Sum_probs=85.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      -.+..|..|....||++....    .+..|.+|+-......... ..+|+.+++.+..-. .-+++..+.  +.  +|||
T Consensus       154 ~~~~~iG~G~fG~V~~a~~~~----tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-IV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          154 DNFIKIGEGSTGIVCIATVRS----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-VVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             EEEEEEEECSSCEEEEEEETT----TCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEE
T ss_pred             EeeeEeccCcCcEEEEEEECC----CCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC-CCceEEEEEECCEEEEEEe
Confidence            357788889899999998653    3578888876432211111 248999999885433 345566543  22  8999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..       +.       .   ....     +  ...+..|..+                 +...+++|-+  
T Consensus       229 y~~gG~L~~-------~i-------~---~~~l-----~--e~~~~~~~~q-----------------il~aL~ylH~--  265 (423)
T 4fie_A          229 FLEGGALTD-------IV-------T---HTRM-----N--EEQIAAVCLA-----------------VLQALSVLHA--  265 (423)
T ss_dssp             CCTTEEHHH-------HH-------H---HSCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH--
T ss_pred             CCCCCcHHH-------HH-------h---ccCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            999866531       11       1   0111     0  1223333322                 2233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       266 ------~~IiHRDiKp~NILl~~~-g~vKl~DFGla~  295 (423)
T 4fie_A          266 ------QGVIHRDIKSDSILLTHD-GRVKLSDFGFCA  295 (423)
T ss_dssp             ------TTEECCCCSTTTEEECTT-CCEEECCCTTCE
T ss_pred             ------CCeecccCCHHHEEEcCC-CCEEEecCccce
Confidence                  249999999999999874 789999999885

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.53  E-value=3e-07  Score=79.73  Aligned_cols=134  Identities=18%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC------eeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD------GRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~------~~v~e  112 (267)
                      -+..|..|....||++....    .+..+++|+........  ..+|+.+++.+..+.-.++++....+      .++++
T Consensus        40 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~--~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e  113 (330)
T 3nsz_A           40 LVRKLGRGKYSEVFEAINIT----NNEKVVVKILKPVKKKK--IKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE  113 (330)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEECSCCHHH--HHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEE
T ss_pred             EEEEecccCCeEEEEEEECC----CCcEEEEEEecccchHH--HHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEe
Confidence            45667888889999997543    35799999976543221  24899999999866555566665432      27899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..           +   +   +.  .      . ...+..+..                 .+...+..|-+  
T Consensus       114 ~~~~~~l~~-----------~---~---~~--~------~-~~~~~~~~~-----------------qi~~~l~~lH~--  148 (330)
T 3nsz_A          114 HVNNTDFKQ-----------L---Y---QT--L------T-DYDIRFYMY-----------------EILKALDYCHS--  148 (330)
T ss_dssp             CCCCCCHHH-----------H---G---GG--C------C-HHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             ccCchhHHH-----------H---H---Hh--C------C-HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            998765421           0   0   00  0      0 011222222                 12233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.|||++.++..+.|+||+.|.
T Consensus       149 ------~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~  179 (330)
T 3nsz_A          149 ------MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  179 (330)
T ss_dssp             ------TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             ------CCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence                  1399999999999999754478999999884

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=98.52  E-value=2.5e-07  Score=81.71  Aligned_cols=137  Identities=14%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      -.+..|..|....||++....    .+..|.+|+-...... .....+|+.+++.+..-. .-+++..+.  +.  +|||
T Consensus        77 ~~~~~iG~G~fG~V~~a~~~~----tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-IV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           77 DNFIKIGEGSTGIVCIATVRS----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-VVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             EEEEEEEECSSCEEEEEEETT----TCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEC
T ss_pred             EEeEEeecCcCeEEEEEEECC----CCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEe
Confidence            357788888899999998653    3578888876322111 111248999999885433 345666543  22  8999


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..       +       +.+   ...     +  ......|..+                 +...++++-+  
T Consensus       152 y~~gg~L~~-------~-------l~~---~~l-----~--e~~~~~~~~q-----------------i~~aL~ylH~--  188 (346)
T 4fih_A          152 FLEGGALTD-------I-------VTH---TRM-----N--EEQIAAVCLA-----------------VLQALSVLHA--  188 (346)
T ss_dssp             CCTTEEHHH-------H-------HHH---SCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH--
T ss_pred             CCCCCcHHH-------H-------HHc---CCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            999865431       1       111   111     0  1223333322                 2233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       189 ------~~IiHRDlKp~NILl~~~-g~vKl~DFGla~  218 (346)
T 4fih_A          189 ------QGVIHRDIKSDSILLTHD-GRVKLSDFGFCA  218 (346)
T ss_dssp             ------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ------CCcccccCCHHHEEECCC-CCEEEecCcCce
Confidence                  239999999999999874 789999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.45  E-value=1e-06  Score=77.80  Aligned_cols=141  Identities=9%  Similarity=0.089  Sum_probs=80.5

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      .-+..|..|.-..||++....    .+..|.+|+.....  .. ...-.+|+.+++.|..-.+ .+++..+.  +.  +|
T Consensus        27 ~~~~~lG~G~fg~V~~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-V~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           27 VRLQKIGEGSFGKAILVKSTE----DGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNI-VQYRESFEENGSLYIV  101 (350)
T ss_dssp             EEEEEC------CEEEEEETT----TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEETTEEEEE
T ss_pred             EEeEEEecCCCeEEEEEEECC----CCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCC-CcEEEEEEECCEEEEE
Confidence            346778888889999998643    35789999865432  11 1112479999988854333 45666553  22  89


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      |||++|..+..              .|.+   ...  .  .-.......|..+                 +...++.+-+
T Consensus       102 mEy~~gg~L~~--------------~i~~---~~~--~--~~~e~~~~~~~~q-----------------i~~aL~ylH~  143 (350)
T 4b9d_A          102 MDYCEGGDLFK--------------RINA---QKG--V--LFQEDQILDWFVQ-----------------ICLALKHVHD  143 (350)
T ss_dssp             EECCTTCBHHH--------------HHHH---TTT--C--CCCHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHH---cCC--C--CCCHHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876531              1111   000  0  0011123333332                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       144 --------~~IiHRDlKp~NILl~~~-g~vKl~DFGla~~  174 (350)
T 4b9d_A          144 --------RKILHRDIKSQNIFLTKD-GTVQLGDFGIARV  174 (350)
T ss_dssp             --------TTCEETTCCGGGEEECTT-CCEEECSTTEESC
T ss_pred             --------CCeeeccCCHHHEEECCC-CCEEEccccccee
Confidence                    239999999999999874 7899999999975

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.43  E-value=1.6e-07  Score=88.39  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhCCCCceEEEEECCe----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHH
Q 024452           83 DDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLR  158 (267)
Q Consensus        83 ~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~  158 (267)
                      .+|+++++.+..+-..|+++.++++.    +||||++|.++..              .|.+-    .+    ...    +
T Consensus       289 ~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d--------------~i~~~----~~----l~~----~  342 (569)
T 4azs_A          289 HNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSD--------------MLAAG----EE----IDR----E  342 (569)
T ss_dssp             HHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHH--------------HHHTT----CC----CCH----H
T ss_pred             HHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHH--------------HHHhC----CC----CCH----H
Confidence            35777777776666689999988642    9999999987642              11110    00    010    0


Q ss_pred             HHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          159 KWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.+.                 .+...++.+-        ..+++|+|++|.|||++++ +.++|+||..|.
T Consensus       343 ~I~~-----------------QIl~AL~ylH--------~~GIIHRDIKPeNILL~~d-g~vKL~DFGlAr  387 (569)
T 4azs_A          343 KILG-----------------SLLRSLAALE--------KQGFWHDDVRPWNVMVDAR-QHARLIDFGSIV  387 (569)
T ss_dssp             HHHH-----------------HHHHHHHHHH--------HTTCEESCCCGGGEEECTT-SCEEECCCTTEE
T ss_pred             HHHH-----------------HHHHHHHHHH--------HCCceeccCchHhEEECCC-CCEEEeecccCe
Confidence            1111                 1222333332        2349999999999999974 789999999875

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=98.41  E-value=8.5e-07  Score=78.73  Aligned_cols=157  Identities=10%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH
Q 024452           14 PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS   93 (267)
Q Consensus        14 ~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~   93 (267)
                      ..++.++... +|...+     .-.-...|..|.-..||++..... ...+..+.+|.-.+... .....+|.++++.+.
T Consensus         6 ~~~i~~l~~~-~p~l~~-----~Y~i~~~lG~G~fg~Vy~a~~~~~-~~~~~~vAiK~i~~~~~-~~~~~~E~~~l~~~~   77 (361)
T 4f9c_A            6 KKDIEKLYEA-VPQLSN-----VFKIEDKIGEGTFSSVYLATAQLQ-VGPEEKIALKHLIPTSH-PIRIAAELQCLTVAG   77 (361)
T ss_dssp             CHHHHHHHHH-SGGGGG-----TCEEEEEEEECSSEEEEEEEEEBT-TSCEEEEEEEEECTTSC-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHh-cCCccC-----cEEEEEEEecccCcEEEEEEEccc-CCCCCEEEEEEEccccC-HHHHHHHHHHHHHhc
Confidence            3444444433 465543     223456778888899999964211 01246788886544321 112247888888876


Q ss_pred             hCCCCceEEEEEC--Ce--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccC
Q 024452           94 SQGQGPRLLGRFG--DG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCS  169 (267)
Q Consensus        94 ~~gl~P~v~~~~~--~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~  169 (267)
                      .+.-..+++..+.  +.  +|+||++|..+..              .+   +..        . ....+.|..+      
T Consensus        78 ~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~--------------~~---~~l--------~-~~~~~~~~~q------  125 (361)
T 4f9c_A           78 GQDNVMGVKYCFRKNDHVVIAMPYLEHESFLD--------------IL---NSL--------S-FQEVREYMLN------  125 (361)
T ss_dssp             SBTTBCCCSEEEEETTEEEEEEECCCCCCHHH--------------HH---TTC--------C-HHHHHHHHHH------
T ss_pred             CCCCCceEEEEEEECCEEEEEEeCCCcccHHH--------------HH---cCC--------C-HHHHHHHHHH------
Confidence            5543444555443  32  8899999864421              11   111        0 1223333322      


Q ss_pred             cccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          170 AKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                 +...++.+-+        ..++|+|++|.|||++.+.+.+.|+||..|.
T Consensus       126 -----------ll~al~ylH~--------~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~  166 (361)
T 4f9c_A          126 -----------LFKALKRIHQ--------FGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ  166 (361)
T ss_dssp             -----------HHHHHHHHHH--------TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             -----------HHHHHHHHHH--------CCeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence                       2233344432        3499999999999998754679999999884

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=98.41  E-value=9.2e-07  Score=75.58  Aligned_cols=137  Identities=16%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -+..|..|....||++....    ++..|.+|+.....   ..... -.+|+++++.+.. --..+++..+.+  .  +|
T Consensus        17 i~~~lG~G~fg~V~~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-pnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           17 IVKTLGEGSFGKVKLAYHTT----TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH-PHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             EEEEEEC---CCEEEEECTT----TCCEEEEEEEECC------CHHHHHHHHHHHHHCCC-TTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEecCcCeEEEEEEECC----CCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCC-CCCCeEEEEEEECCEEEEE
Confidence            35677888889999998543    35789999865432   11111 2479999988853 333456666542  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++| .+          ...    +.+  ....     +  ......|..+                 +...++.+-+
T Consensus        92 mEy~~g-~L----------~~~----l~~--~~~l-----~--e~~~~~~~~q-----------------i~~al~ylH~  130 (275)
T 3hyh_A           92 IEYAGN-EL----------FDY----IVQ--RDKM-----S--EQEARRFFQQ-----------------IISAVEYCHR  130 (275)
T ss_dssp             EECCCE-EH----------HHH----HHH--SCSC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCC-CH----------HHH----HHH--cCCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            999865 21          111    111  0000     1  1123333322                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       131 --------~~IiHRDiKP~NILl~~~-~~vkl~DFGla~~  161 (275)
T 3hyh_A          131 --------HKIVHRDLKPENLLLDEH-LNVKIADFGLSNI  161 (275)
T ss_dssp             --------TTCCCCCCCTTTEEECTT-CCEEECCSSCC--
T ss_pred             --------CCcccccCChHHeEECCC-CCEEEeecCCCee
Confidence                    238999999999999874 6899999999864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=98.37  E-value=1e-06  Score=75.66  Aligned_cols=159  Identities=17%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHH
Q 024452           13 SPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFEC   91 (267)
Q Consensus        13 ~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~   91 (267)
                      +++++.+-++..+.. .+..  ..-..+..|..|....||++....    .+..+++|+......... ...+|+.+++.
T Consensus         1 ~~e~~~~~l~~~~~~-~~~~--~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~   73 (297)
T 3fxz_A            1 SDEEILEKLRSIVSV-GDPK--KKYTRFEKIGQGASGTVYTAMDVA----TGQEVAIRQMNLQQQPKKELIINEILVMRE   73 (297)
T ss_dssp             CHHHHHHHHHHHSBS-SCGG--GTBCCCEEEEEETTEEEEEEEBTT----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHhhhhcccCc-CChh--hceeeeeeeccCCCeEEEEEEECC----CCcEEEEEEeecccccHHHHHHHHHHHHhc
Confidence            356677777776421 0100  123346678888889999997432    357888987643221111 11367777777


Q ss_pred             HHhCCCCceEEEEEC--Ce--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhc
Q 024452           92 MSSQGQGPRLLGRFG--DG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSF  167 (267)
Q Consensus        92 l~~~gl~P~v~~~~~--~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~  167 (267)
                      +..-++ ++++..+.  +.  +|+||++|.++..       ..       .   ....      . ...+..+..     
T Consensus        74 l~hp~i-v~~~~~~~~~~~~~lv~e~~~~~~L~~-------~~-------~---~~~~------~-~~~~~~~~~-----  123 (297)
T 3fxz_A           74 NKNPNI-VNYLDSYLVGDELWVVMEYLAGGSLTD-------VV-------T---ETCM------D-EGQIAAVCR-----  123 (297)
T ss_dssp             CCCTTB-CCEEEEEEETTEEEEEEECCTTCBHHH-------HH-------H---HSCC------C-HHHHHHHHH-----
T ss_pred             CCCCCC-CeEeEEEEECCEEEEEEECCCCCCHHH-------HH-------h---hcCC------C-HHHHHHHHH-----
Confidence            644333 44555542  22  8899999866532       11       1   0000      0 112222222     


Q ss_pred             cCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          168 CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       168 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                  .+...+..|-+        ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       124 ------------qi~~~l~~lH~--------~~i~H~Dlkp~Nil~~~~-~~~kl~Dfg~~~  164 (297)
T 3fxz_A          124 ------------ECLQALEFLHS--------NQVIHRDIKSDNILLGMD-GSVKLTDFGFCA  164 (297)
T ss_dssp             ------------HHHHHHHHHHH--------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ------------HHHHHHHHHHh--------CCceeCCCCHHHEEECCC-CCEEEeeCCCce
Confidence                        12233344432        149999999999999874 689999999763

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.36  E-value=1.2e-06  Score=74.05  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeec
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIH  115 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~  115 (267)
                      -+..|..|....||++....     +..+++|.........-...+|+.+++.+...++ +++++...+.   ++++|++
T Consensus        17 ~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~v~e~~~   90 (279)
T 1qpc_A           17 LVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRL-VRLYAVVTQEPIYIITEYME   90 (279)
T ss_dssp             EEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSCEEEEECCT
T ss_pred             heeeecCCCCeEEEEEEEcC-----CcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCc-ceEEEEEcCCCcEEEEecCC
Confidence            35667778889999998542     4678999876543221112478888888854333 4566665432   8899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++... +...             ....      .. ...+..+..                 .+...+..|.+     
T Consensus        91 ~~~L~~~-l~~~-------------~~~~------~~-~~~~~~i~~-----------------qi~~~l~~lH~-----  127 (279)
T 1qpc_A           91 NGSLVDF-LKTP-------------SGIK------LT-INKLLDMAA-----------------QIAEGMAFIEE-----  127 (279)
T ss_dssp             TCBHHHH-TTSH-------------HHHT------CC-HHHHHHHHH-----------------HHHHHHHHHHH-----
T ss_pred             CCCHHHH-HhcC-------------CCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH-----
Confidence            8766421 0000             0000      00 111112221                 12233334432     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.||++++ ++.+.|+||+.+.
T Consensus       128 ---~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~  157 (279)
T 1qpc_A          128 ---RNYIHRDLRAANILVSD-TLSCKIADFGLAR  157 (279)
T ss_dssp             ---TTEECSCCSGGGEEECT-TSCEEECCCTTCE
T ss_pred             ---CCeeccCCCHhhEEEcC-CCCEEECCCcccc
Confidence               23899999999999987 4689999998774

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=98.36  E-value=1.2e-06  Score=75.27  Aligned_cols=139  Identities=12%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      .....|..|....||++....    .+..+++|.......... ...+|+.+++.+..-++ +++++.+.  +.  +|+|
T Consensus        13 ~~~~~lG~G~~g~V~~~~~~~----~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A           13 IHGEVLGKGCFGQAIKVTHRE----TGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNV-LKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             EEEEEEECCSSEEEEEEEETT----TCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTB-CCEEEEEEETTEEEEEEE
T ss_pred             eccceecCCCCEEEEEEEECC----CCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCc-ccEEEEEecCCeeEEEEE
Confidence            345567788889999998643    357888887644322111 12468887777753333 44565543  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.+..   .+    .. ......+..                 .+...+..|.+  
T Consensus        88 ~~~~~~L~~--------------~l~~~~---~~----~~-~~~~~~i~~-----------------qi~~al~~lH~--  126 (310)
T 3s95_A           88 YIKGGTLRG--------------IIKSMD---SQ----YP-WSQRVSFAK-----------------DIASGMAYLHS--  126 (310)
T ss_dssp             CCTTCBHHH--------------HHHHCC---TT----SC-HHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             ecCCCcHHH--------------HHHhcc---CC----CC-HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            999866532              111110   00    11 111222222                 22233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       127 ------~~ivH~dlkp~Nil~~~~-~~~kl~Dfg~~~  156 (310)
T 3s95_A          127 ------MNIIHRDLNSHNCLVREN-KNVVVADFGLAR  156 (310)
T ss_dssp             ------TTEECSCCSTTSEEECTT-SCEEECCCTTCE
T ss_pred             ------CCccCCCCCcCeEEECCC-CCEEEeecccce
Confidence                  139999999999999874 689999999874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=98.34  E-value=1.1e-06  Score=73.93  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      -+..|..|....||++....     +..+++|+............+|+.+++.+...++ +++++.+.+.    +|++|+
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A           12 LLKELGSGQFGVVKLGKWKG-----QYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKL-VKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             EEEEEEEETTEEEEEEEETT-----TEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSSEEEEEECC
T ss_pred             eeeeeccCCCceEEEEEecC-----ceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCE-eeEEEEEccCCceEEEEEcc
Confidence            46667778888999997642     4678999876543221112478888888864333 4566665432    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ...       + +....      + ...+..+..                 .+...+..|.+    
T Consensus        86 ~~~~L~~-------~l~-------~-~~~~~------~-~~~~~~i~~-----------------qi~~~l~~lH~----  122 (268)
T 3sxs_A           86 SNGCLLN-------YLR-------S-HGKGL------E-PSQLLEMCY-----------------DVCEGMAFLES----  122 (268)
T ss_dssp             TTCBHHH-------HHH-------H-HGGGC------C-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCcHHH-------HHH-------H-cCCCC------C-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            9865532       111       0 00000      1 111222222                 12233334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       123 ----~~i~H~dikp~Nil~~~~-~~~~l~Dfg~~~  152 (268)
T 3sxs_A          123 ----HQFIHRDLAARNCLVDRD-LCVKVSDFGMTR  152 (268)
T ss_dssp             ----TTEEESSCSGGGEEECTT-CCEEECCTTCEE
T ss_pred             ----CCeecCCcCcceEEECCC-CCEEEccCccce
Confidence                239999999999999874 689999999774

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=98.33  E-value=1.2e-06  Score=74.18  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      .-+..|..|....||++....     +..+.+|+.........+..+|+.+++.+...+ .+++++.+.+.    +|++|
T Consensus        27 ~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~  100 (283)
T 3gen_A           27 TFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTKQRPIFIITEY  100 (283)
T ss_dssp             EEEEECC---CEEEEEEEETT-----TEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSEEEEECC
T ss_pred             HhHhhcCCCCCceEEEEEEcC-----CCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCC-EeeEEEEEecCCCeEEEEec
Confidence            346677888889999997642     467899987654322111247888887776433 34566665432    88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+.+...   +    .. ...+..+..                 .+...+..|.+   
T Consensus       101 ~~~~~L~~--------------~l~~~~~---~----~~-~~~~~~i~~-----------------qi~~~l~~lH~---  138 (283)
T 3gen_A          101 MANGCLLN--------------YLREMRH---R----FQ-TQQLLEMCK-----------------DVCEAMEYLES---  138 (283)
T ss_dssp             CTTCBHHH--------------HHHCGGG---C----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             cCCCcHHH--------------HHHHhcc---C----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            98865532              1111100   0    01 111222222                 12233334432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       139 -----~~i~H~dikp~Nili~~~-~~~kl~Dfg~~~  168 (283)
T 3gen_A          139 -----KQFLHRDLAARNCLVNDQ-GVVKVSDFGLSR  168 (283)
T ss_dssp             -----TTCCCSSCSGGGEEECTT-SCEEECSTTGGG
T ss_pred             -----CCccCCCCccceEEEcCC-CCEEEccccccc
Confidence                 138999999999999874 689999999875

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.33  E-value=6.2e-07  Score=77.62  Aligned_cols=139  Identities=15%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--C------eeEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D------GRVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~------~~v~e  112 (267)
                      +.|..|.-..||+....      +..+.+|+..........++.|+..+..+..-.+ -++++.+.  +      .+|+|
T Consensus         9 ~~iG~G~fG~Vy~~~~~------g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNI-v~l~g~~~~~~~~~~~~~lV~E   81 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKWR------GEEVAVKIFSSREERSWFREAEIYQTVMLRHENI-LGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             EEEEECSSSEEEEEEET------TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTB-CCEEEEEEEECSSSEEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEEC------CEEEEEEEECccchhhHHHHHHHHHHhcCCCCCC-CcEEEEEEecCCCceEEEEEec
Confidence            45777878999999863      4788899875432211111223322222322222 34555432  2      27899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ..          |....      . ++...++..                 .+...+.++-+..
T Consensus        82 y~~~gsL~~-------~l----------~~~~l------~-~~~~~~i~~-----------------~ia~gl~ylH~~~  120 (303)
T 3hmm_A           82 YHEHGSLFD-------YL----------NRYTV------T-VEGMIKLAL-----------------STASGLAHLHMEI  120 (303)
T ss_dssp             CCTTCBHHH-------HH----------HHCCB------C-HHHHHHHHH-----------------HHHHHHHHHHCCB
T ss_pred             CCCCCcHHH-------HH----------HhCCC------C-HHHHHHHHH-----------------HHHHHHHHHHHhh
Confidence            999876532       11          11111      1 111111211                 1223334443322


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      ........++|+|++|.|||++++ +.+.|.||..|
T Consensus       121 ~~~~~~~~IiHRDlKp~NILl~~~-~~~Ki~DFGla  155 (303)
T 3hmm_A          121 VGTQGKPAIAHRDLKSKNILVKKN-GTCCIADLGLA  155 (303)
T ss_dssp             CSTTCBCCEECSCCCGGGEEECTT-SCEEECCCTTC
T ss_pred             hhccCCCCEeeccCCcccEEECCC-CCEEEEeCCCC
Confidence            222346689999999999999974 78999999976

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=98.32  E-value=2.4e-06  Score=75.55  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=82.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--------cC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce-
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--------FN-RDDEIRTFECMSSQGQGPRLLGRFG--DG-  108 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--------~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~-  108 (267)
                      .+|..|....||++....    ++..+++|+........        .. ..+|..+++.+..+.-.++++..+.  +. 
T Consensus       100 ~~lg~G~~g~Vy~a~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  175 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRA----TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFM  175 (365)
T ss_dssp             EEEEECSSEEEEEEEETT----TCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEE
T ss_pred             eEEecCCCEEEEEEEECC----CCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEE
Confidence            677778889999998643    35789999876543111        11 1367888888865544445555543  22 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++..       ...       .  ...      .. ......+..+                 +...+..
T Consensus       176 ~lv~e~~~g~~L~~-------~l~-------~--~~~------l~-~~~~~~i~~q-----------------i~~~L~~  215 (365)
T 2y7j_A          176 FLVFDLMRKGELFD-------YLT-------E--KVA------LS-EKETRSIMRS-----------------LLEAVSF  215 (365)
T ss_dssp             EEEECCCTTCBHHH-------HHH-------H--HSS------CC-HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEeCCCCcHHH-------HHH-------h--cCC------CC-HHHHHHHHHH-----------------HHHHHHH
Confidence             8899999876532       111       0  000      01 1112222221                 2223334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|+||+++++ +.+.|+||..+.
T Consensus       216 LH~--------~gi~H~Dlkp~NIl~~~~-~~ikl~DfG~~~  248 (365)
T 2y7j_A          216 LHA--------NNIVHRDLKPENILLDDN-MQIRLSDFGFSC  248 (365)
T ss_dssp             HHH--------TTEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHh--------CCeecCCCCHHHEEECCC-CCEEEEecCccc
Confidence            432        149999999999999974 789999999764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.32  E-value=8.1e-07  Score=74.75  Aligned_cols=138  Identities=17%  Similarity=0.084  Sum_probs=83.5

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      .-+..|..|....||++....     +..+++|+.........+..+|+.+++.+...+ .+++++.+.+    .++++|
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A           13 TFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             EEEEEEEECSSCEEEEEEETT-----TEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSEEEEEEC
T ss_pred             eeeheecCCCccEEEEEEecC-----CCeEEEEEecccccCHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCceEEEEEe
Confidence            345677888889999998642     467999987654322112247888888876433 3456666543    288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       .       +   +....+    .. ...+..+..                 .+...+..|.+.  
T Consensus        87 ~~~~~L~~-------~-------l---~~~~~~----~~-~~~~~~i~~-----------------~i~~~l~~lH~~--  125 (269)
T 4hcu_A           87 MEHGCLSD-------Y-------L---RTQRGL----FA-AETLLGMCL-----------------DVCEGMAYLEEA--  125 (269)
T ss_dssp             CTTCBHHH-------H-------H---HTTTTC----CC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             CCCCcHHH-------H-------H---HhcCcc----cC-HHHHHHHHH-----------------HHHHHHHHHHhC--
Confidence            99876532       0       1   111000    01 111222221                 122233344321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       126 ------~i~H~dikp~Nil~~~~-~~~kl~Dfg~~~  154 (269)
T 4hcu_A          126 ------CVIHRDLAARNCLVGEN-QVIKVSDFGMTR  154 (269)
T ss_dssp             ------TCCCSCCCGGGEEECGG-GCEEECCTTGGG
T ss_pred             ------CeecCCcchheEEEcCC-CCEEeccccccc
Confidence                  38999999999999874 689999999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=98.32  E-value=2.7e-06  Score=74.13  Aligned_cols=85  Identities=16%  Similarity=0.114  Sum_probs=52.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      +.++ ...|..|....||++..... ..+.+..+++|+...... ... ...+|+.+++.+..+.-.+++++.+...   
T Consensus        45 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  124 (344)
T 1rjb_A           45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  124 (344)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCcc
Confidence            3444 55677788899999985210 011345788998754321 111 1247899998886555556677766432   


Q ss_pred             -eEEEeecCCCCC
Q 024452          109 -RVEEFIHARTLS  120 (267)
Q Consensus       109 -~v~e~i~G~~l~  120 (267)
                       +|+||++|.++.
T Consensus       125 ~lv~e~~~~g~L~  137 (344)
T 1rjb_A          125 YLIFEYCCYGDLL  137 (344)
T ss_dssp             EEEEECCTTCBHH
T ss_pred             EEEEecCCCCcHH
Confidence             899999987654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=98.31  E-value=6.2e-07  Score=76.51  Aligned_cols=143  Identities=14%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC----C--eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG----D--GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~----~--~~v~  111 (267)
                      -+..|..|....||++.........+..+.+|+......... .-.+|+.+++.+...++ .++++...    .  .+|+
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~lv~   92 (295)
T 3ugc_A           14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI-VKYKGVCYSAGRRNLKLIM   92 (295)
T ss_dssp             EEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTB-CCEEEEECHHHHTSCEEEE
T ss_pred             hhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCE-eeEEEEEecCCCCceEEEE
Confidence            356677888899999974321112357889998765432211 12478888887754333 44555542    1  2899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..       ..       .+- ...      .. ...+..+..                 .+...+..|-+ 
T Consensus        93 e~~~~~~L~~-------~l-------~~~-~~~------~~-~~~~~~~~~-----------------qi~~~l~~lH~-  132 (295)
T 3ugc_A           93 EYLPYGSLRD-------YL-------QKH-KER------ID-HIKLLQYTS-----------------QICKGMEYLGT-  132 (295)
T ss_dssp             ECCTTCBHHH-------HH-------HHC-GGG------CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EeCCCCCHHH-------HH-------Hhc-ccc------cC-HHHHHHHHH-----------------HHHHHHHHHhc-
Confidence            9999876532       11       100 000      01 111222222                 12223334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                             ..++|+|++|.||+++++ +.+.|+||..+..
T Consensus       133 -------~~ivH~Dikp~Nil~~~~-~~~kl~Dfg~~~~  163 (295)
T 3ugc_A          133 -------KRYIHRDLATRNILVENE-NRVKIGDFGLTKV  163 (295)
T ss_dssp             -------TTCCCSCCSGGGEEEEET-TEEEECCCCSCC-
T ss_pred             -------CCcccCCCCHhhEEEcCC-CeEEEccCccccc
Confidence                   238999999999999974 6799999998753

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=98.31  E-value=7.5e-07  Score=77.46  Aligned_cols=140  Identities=17%  Similarity=0.108  Sum_probs=85.0

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG--  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~--  108 (267)
                      ++.+ +..|..|....||++....    .+..|.+|+-....   ..... ..+|+++++.+. +--..+++..+.+.  
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  106 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELA----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD-HPFFVKLYFTFQDDEK  106 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC-CTTBCCEEEEEECSSE
T ss_pred             cccEEEEEEecccCeEEEEEEECC----CCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCC-CCCCCeEEEEEEeCCE
Confidence            4455 4556778889999998643    35789999864321   11111 247888888775 33334566665432  


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        +|+||++|..+..              .+.+-...       +  ......|..+                 +...++
T Consensus       107 ~yivmEy~~gG~L~~--------------~i~~~~~l-------~--e~~~~~~~~q-----------------i~~al~  146 (311)
T 4aw0_A          107 LYFGLSYAKNGELLK--------------YIRKIGSF-------D--ETCTRFYTAE-----------------IVSALE  146 (311)
T ss_dssp             EEEEECCCTTEEHHH--------------HHHHHSSC-------C--HHHHHHHHHH-----------------HHHHHH
T ss_pred             EEEEEecCCCCCHHH--------------HHHHcCCC-------C--HHHHHHHHHH-----------------HHHHHH
Confidence              8899999866531              11111110       0  1123333332                 223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+-+        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       147 ylH~--------~~IiHRDlKPeNILl~~~-g~vKl~DFGla~  180 (311)
T 4aw0_A          147 YLHG--------KGIIHRDLKPENILLNED-MHIQITDFGTAK  180 (311)
T ss_dssp             HHHH--------TTEECSCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             HHHH--------CCCccCCCCHHHeEEcCC-CCEEEEEcCCce
Confidence            4432        249999999999999874 689999999885

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=98.29  E-value=1.3e-06  Score=76.75  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=81.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ...|..|--..||++....    .+..|.+|+-....  +.  .+|+.+++.+..-. ..++++.+.  +.  +||||++
T Consensus        63 ~~~lG~G~fG~Vy~a~~~~----~g~~vAiK~i~~~~--~~--~~E~~il~~l~Hpn-IV~l~~~~~~~~~~~ivmEy~~  133 (336)
T 4g3f_A           63 QPRVGRGSFGEVHRMKDKQ----TGFQCAVKKVRLEV--FR--VEELVACAGLSSPR-IVPLYGAVREGPWVNIFMELLE  133 (336)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEEEETTT--CC--THHHHTTTTCCCTT-BCCEEEEEEETTEEEEEECCCT
T ss_pred             CcEeccCCCeEEEEEEECC----CCCEEEEEEECHHH--hH--HHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEeccC
Confidence            3457778889999998643    35788899865432  21  37888887775323 244566553  22  8899999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+..              .|.+-..  .     +  ......|..+                 +...++++-+     
T Consensus       134 gg~L~~--------------~l~~~~~--l-----~--e~~~~~~~~q-----------------i~~aL~ylH~-----  168 (336)
T 4g3f_A          134 GGSLGQ--------------LIKQMGC--L-----P--EDRALYYLGQ-----------------ALEGLEYLHT-----  168 (336)
T ss_dssp             TCBHHH--------------HHHHHSS--C-----C--HHHHHHHHHH-----------------HHHHHHHHHT-----
T ss_pred             CCcHHH--------------HHHHcCC--C-----C--HHHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            876532              1111110  1     0  1122223322                 2233344432     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.|||++.++..+.|+||..|.
T Consensus       169 ---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          169 ---RRILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             ---TTEECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             ---CCceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence               2499999999999998753369999999885

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.26  E-value=5.5e-06  Score=70.44  Aligned_cols=138  Identities=9%  Similarity=0.054  Sum_probs=83.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      -...|..|....||++....    .+..+++|+...... .....+|+.+++.+..+.-.|.++....++    ++++|+
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~-~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A           14 VGRRIGEGSFGVIFEGTNLL----NNQQVAIKFEPRRSD-APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TTEEEEEEEEECCTT-SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             EEEEEeecCCEEEEEEEECC----CCcEEEEEEeccCCc-cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence            45667888889999998543    357899998744321 112357999999987776667787776422    889998


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                       |.++..       .       +.+.   ..+    .. ......+..                 .+...+..|-+    
T Consensus        89 -~~~L~~-------~-------l~~~---~~~----~~-~~~~~~i~~-----------------qi~~~l~~lH~----  124 (298)
T 1csn_A           89 -GPSLED-------L-------LDLC---GRK----FS-VKTVAMAAK-----------------QMLARVQSIHE----  124 (298)
T ss_dssp             -CCBHHH-------H-------HHHT---TTC----CC-HHHHHHHHH-----------------HHHHHHHHHHT----
T ss_pred             -CCCHHH-------H-------HHHh---ccC----CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence             654431       1       1110   000    11 111222222                 12223333432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCC----CCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEET----SSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~----~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++.++    ..+.|+||..|.
T Consensus       125 ----~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~  159 (298)
T 1csn_A          125 ----KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  159 (298)
T ss_dssp             ----TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             ----CCEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence                2499999999999998642    129999999774

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.26  E-value=2.5e-06  Score=73.40  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             EEEE-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEEC----C--
Q 024452           38 LQVI-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG----D--  107 (267)
Q Consensus        38 ~~i~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~----~--  107 (267)
                      .++. .|..|.-..||++....    .+..+.+|......  ..... -.+|+.+++.+..-. ..++++.+.    +  
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-IV~~~~~~~~~~~~~~  102 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTE----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN-IVRFYDSWESTVKGKK  102 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEEEETTEE
T ss_pred             EEeeeEEecCcCcEEEEEEECC----CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEeeccCCCc
Confidence            3443 47778789999997643    35677777653321  11111 147888888775433 234555432    1  


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        .+|+||++|..+..       .       +.+-.  ..       .......|..+                 +...+
T Consensus       103 ~~~lvmEy~~gg~L~~-------~-------l~~~~--~l-------~~~~~~~~~~q-----------------i~~aL  142 (290)
T 3fpq_A          103 CIVLVTELMTSGTLKT-------Y-------LKRFK--VM-------KIKVLRSWCRQ-----------------ILKGL  142 (290)
T ss_dssp             EEEEEEECCCSCBHHH-------H-------HHHHS--SC-------CHHHHHHHHHH-----------------HHHHH
T ss_pred             EEEEEEeCCCCCCHHH-------H-------HHhcC--CC-------CHHHHHHHHHH-----------------HHHHH
Confidence              27899999876632       1       11110  00       01223333322                 22233


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +.+-+      ....++|+|++|.|||++.+++.+.|+||..|..
T Consensus       143 ~ylH~------~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          143 QFLHT------RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             HHHHT------SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             HHHHH------CCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            34421      1224899999999999975346899999999864

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=98.25  E-value=3.7e-06  Score=72.89  Aligned_cols=143  Identities=15%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEE--CC-e---eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRF--GD-G---RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~-~---~v  110 (267)
                      .-+..|..|....||++.........+..+++|+......... ...+|+++++.+...++ +++++..  ++ .   +|
T Consensus        26 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~~~lv  104 (327)
T 3lxl_A           26 KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI-VKYRGVSYGPGRQSLRLV  104 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTB-CCEEEEEECSSSCEEEEE
T ss_pred             hhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCce-eEEEEEEecCCCceEEEE
Confidence            3466778888899999974211112457899998765432211 12478888888844333 3454433  22 1   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ...       +. ....      . ...+..+..                 .+...+..|-+
T Consensus       105 ~e~~~~~~L~~-------~l~-------~~-~~~~------~-~~~~~~i~~-----------------qi~~al~~lH~  145 (327)
T 3lxl_A          105 MEYLPSGCLRD-------FLQ-------RH-RARL------D-ASRLLLYSS-----------------QICKGMEYLGS  145 (327)
T ss_dssp             EECCTTCBHHH-------HHH-------HH-GGGC------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EeecCCCCHHH-------HHH-------hc-ccCC------C-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            99998866532       110       00 0000      0 111222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       146 --------~~ivH~Dikp~NIl~~~~-~~~kl~Dfg~~~  175 (327)
T 3lxl_A          146 --------RRCVHRDLAARNILVESE-AHVKIADFGLAK  175 (327)
T ss_dssp             --------TTEECSCCSGGGEEEEET-TEEEECCGGGCE
T ss_pred             --------CCccCCCCChhhEEECCC-CCEEEcccccce
Confidence                    249999999999999874 679999999875

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=98.25  E-value=1.2e-05  Score=68.08  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=50.4

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----c----cChHHHHHHHHHHHhCCCCceEEEEEC
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----F----FNRDDEIRTFECMSSQGQGPRLLGRFG  106 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~----~dr~~E~~~~~~l~~~gl~P~v~~~~~  106 (267)
                      +..+ ...|..|....||++....    ++..+++|+.......    .    ....+|+.+++.+. +.-.+++++...
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~~i~~~~~~~~   93 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVK----DKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLN-HPNIVKLYGLMH   93 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETT----TCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCC-CTTBCCEEEEET
T ss_pred             ccceehhccccCCceeEEEEEEcC----CceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCC-CCCchhhheeec
Confidence            3444 5667888889999998643    3578999987543211    0    11136777777664 333356677765


Q ss_pred             C--eeEEEeecCCCC
Q 024452          107 D--GRVEEFIHARTL  119 (267)
Q Consensus       107 ~--~~v~e~i~G~~l  119 (267)
                      +  .++++|++|.++
T Consensus        94 ~~~~lv~e~~~~~~L  108 (287)
T 4f0f_A           94 NPPRMVMEFVPCGDL  108 (287)
T ss_dssp             TTTEEEEECCTTCBH
T ss_pred             CCCeEEEEecCCCCH
Confidence            3  389999987654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=98.24  E-value=4.6e-06  Score=73.19  Aligned_cols=136  Identities=18%  Similarity=0.106  Sum_probs=83.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      -...|..|....||++....    .+..+.+|+......   +..+|.+++..+..+.-.+++++.+.++    +|+||+
T Consensus        26 ~~~~lG~G~~g~V~~~~~~~----~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   98 (342)
T 2qr7_A           26 VKEDIGVGSYSVCKRCIHKA----TNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELM   98 (342)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCC
Confidence            34667778788999998643    357899998765432   2347888888887665556677766432    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..          .+    .   ...   .  .. ......+..                 .+...++.|-+    
T Consensus        99 ~gg~L~~----------~i----~---~~~---~--~~-~~~~~~~~~-----------------qi~~al~~lH~----  134 (342)
T 2qr7_A           99 KGGELLD----------KI----L---RQK---F--FS-EREASAVLF-----------------TITKTVEYLHA----  134 (342)
T ss_dssp             CSCBHHH----------HH----H---TCT---T--CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCcHHH----------HH----H---HcC---C--CC-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            8865421          11    0   000   0  01 111222222                 12233344432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||+.++++   .+.|+||+.|.
T Consensus       135 ----~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~  168 (342)
T 2qr7_A          135 ----QGVVHRDLKPSNILYVDESGNPESIRICDFGFAK  168 (342)
T ss_dssp             ----TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred             ----CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence                14999999999999854322   38999999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=98.23  E-value=2.3e-06  Score=75.59  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=84.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....    ........|..+++.+..+...++++..+.+.    +|
T Consensus        27 ~~~~lG~G~fg~V~~~~~~~----~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv  102 (353)
T 3txo_A           27 FIRVLGKGSFGKVMLARVKE----TGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFV  102 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEEcC----CCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEE
Confidence            35667888889999998643    35789999875321    00111136777777776665566777766432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-.  ..      . ......|..+                 +...++.|-+
T Consensus       103 ~E~~~gg~L~~--------------~l~~~~--~~------~-~~~~~~~~~q-----------------i~~aL~~LH~  142 (353)
T 3txo_A          103 MEFVNGGDLMF--------------HIQKSR--RF------D-EARARFYAAE-----------------IISALMFLHD  142 (353)
T ss_dssp             EECCCSCBHHH--------------HHHHHS--SC------C-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHHcC--CC------C-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865531              011100  00      0 1122223222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       143 --------~givHrDlkp~NILl~~~-g~ikL~DFG~a~~  173 (353)
T 3txo_A          143 --------KGIIYRDLKLDNVLLDHE-GHCKLADFGMCKE  173 (353)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCCTTCBC
T ss_pred             --------CCCcccCCCHHHEEECCC-CCEEEccccceee
Confidence                    138999999999999874 6899999998763

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.22  E-value=9.6e-06  Score=69.98  Aligned_cols=144  Identities=14%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--------
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--------  106 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--------  106 (267)
                      +..+ +..|..|....||++....    .+..+++|+............+|+.+++.+..+.-.+++++.+.        
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~   99 (326)
T 2x7f_A           24 GIFELVELVGNGTYGQVYKGRHVK----TGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   99 (326)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCC
T ss_pred             CcEEEEEEeccCCCEEEEEEEECC----CCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcccc
Confidence            4444 5667778788999998643    35789999875432222222478888888865544455665531        


Q ss_pred             C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          107 D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       107 ~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      +  .+|+||++|.++..              .+........      . ...+..+..                 .+...
T Consensus       100 ~~~~lv~e~~~~~~L~~--------------~l~~~~~~~~------~-~~~~~~i~~-----------------qi~~~  141 (326)
T 2x7f_A          100 DQLWLVMEFCGAGSVTD--------------LIKNTKGNTL------K-EEWIAYICR-----------------EILRG  141 (326)
T ss_dssp             CEEEEEEECCTTEEHHH--------------HHHHSGGGCC------C-HHHHHHHHH-----------------HHHHH
T ss_pred             ceEEEEEEcCCCCcHHH--------------HHHhcccCCC------C-HHHHHHHHH-----------------HHHHH
Confidence            1  17899998865531              1111110000      0 111221221                 22233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +..|.+.        .++|+|++|+||+++++ +.+.|+||+.+..
T Consensus       142 l~~lH~~--------~ivH~dlkp~NIl~~~~-~~~kl~Dfg~~~~  178 (326)
T 2x7f_A          142 LSHLHQH--------KVIHRDIKGQNVLLTEN-AEVKLVDFGVSAQ  178 (326)
T ss_dssp             HHHHHHT--------TCCCCCCSGGGEEECTT-CCEEECCCTTTC-
T ss_pred             HHHHHHC--------CccccCCcHHHEEEcCC-CCEEEeeCcCcee
Confidence            3444321        38999999999999874 6899999998753

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.21  E-value=4.3e-06  Score=72.25  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      ...|..|....||++...     ++..+++|.......... ...+|+.+++.+..- -.+++++.+.+    .+|++|+
T Consensus        44 ~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~-~iv~~~~~~~~~~~~~lv~e~~  117 (321)
T 2qkw_B           44 KFLIGHGVFGKVYKGVLR-----DGAKVALKRRTPESSQGIEEFETEIETLSFCRHP-HLVSLIGFCDERNEMILIYKYM  117 (321)
T ss_dssp             CCCSCBCSSSEEEEEECT-----TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCT-TBCCEEEECCCTTCCEEEEECC
T ss_pred             cceeecCCCeeEEEEEEC-----CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCC-CEeeEEEEEcCCCeEEEEEEcC
Confidence            345677888899999853     257899998755432211 113666666655432 23556666542    2899999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++...-                 +....+..  .-.+.....+..+                 +...+..|-+    
T Consensus       118 ~~~~L~~~l-----------------~~~~~~~~--~~~~~~~~~i~~~-----------------i~~~l~~lH~----  157 (321)
T 2qkw_B          118 ENGNLKRHL-----------------YGSDLPTM--SMSWEQRLEICIG-----------------AARGLHYLHT----  157 (321)
T ss_dssp             TTCBTGGGS-----------------SSSCCCSC--CCCHHHHHHHHHH-----------------HHHHHHHHHH----
T ss_pred             CCCcHHHHH-----------------hccCCCcc--ccCHHHHHHHHHH-----------------HHHHHHHhcC----
Confidence            998775321                 11111110  1111222222221                 2223334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||++++ ++.+.|+||+.+.
T Consensus       158 ----~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~  187 (321)
T 2qkw_B          158 ----RAIIHRDVKSINILLDE-NFVPKITDFGISK  187 (321)
T ss_dssp             ----TTEECSCCCSTTEEECT-TCCEEECCCTTCE
T ss_pred             ----CCeecCCCCHHHEEECC-CCCEEEeeccccc
Confidence                24899999999999987 4689999999774

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=98.21  E-value=3.5e-06  Score=72.47  Aligned_cols=141  Identities=14%  Similarity=0.048  Sum_probs=82.3

Q ss_pred             cEEE--EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--e
Q 024452           37 ALQV--IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--R  109 (267)
Q Consensus        37 ~~~i--~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~  109 (267)
                      ...+  ..|..|....||++....    ++..+.+|+......... ...+|+++++.+..+.-.++++..+.  +.  +
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLI----TSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSS----SCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcC----CCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            3455  457888889999997532    357899998754432211 12468888777554444456666653  22  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       ..       .+-.  .      .. ......+..                 .+...+..|-
T Consensus        89 v~e~~~~~~L~~-------~l-------~~~~--~------~~-~~~~~~i~~-----------------qi~~~l~~lH  128 (316)
T 2ac3_A           89 VFEKMRGGSILS-------HI-------HKRR--H------FN-ELEASVVVQ-----------------DVASALDFLH  128 (316)
T ss_dssp             EEECCTTCBHHH-------HH-------HHHS--S------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEEcCCCCcHHH-------HH-------hccC--C------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999865531       11       1000  0      01 011111221                 2223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~  229 (267)
                      +.        .++|+|++|.||+++.++.  .+.|+||+.+.
T Consensus       129 ~~--------~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~  162 (316)
T 2ac3_A          129 NK--------GIAHRDLKPENILCEHPNQVSPVKICDFDLGS  162 (316)
T ss_dssp             HT--------TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC
T ss_pred             hC--------CceeCCCCHHHEEEccCCCcCceEEEEccCcc
Confidence            21        4899999999999986422  38999998764

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=98.21  E-value=3.4e-06  Score=72.10  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---c-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---F-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -...|..|....||++....    .+..+.+|+.......   . ....+|..++..+..-+ .++++..+.  +.  +|
T Consensus        35 i~~~lg~G~~g~Vy~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~-iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           35 LLIFHGGVPPLQFWQALDTA----LDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG-VARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             EEEEEEBSTTCEEEEEEETT----TTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             EEEEEcccCCeEEEEEEecC----CCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCC-cceeeEEEEECCcEEEE
Confidence            35667778889999998643    3578999998654211   0 11135666555543322 355666543  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..           +   +.   .    .   +... ....+..                 .+...++.+-+
T Consensus       110 ~e~~~g~~L~~-----------~---l~---~----~---~~~~-~~~~i~~-----------------ql~~aL~~lH~  147 (286)
T 3uqc_A          110 AEWIRGGSLQE-----------V---AD---T----S---PSPV-GAIRAMQ-----------------SLAAAADAAHR  147 (286)
T ss_dssp             EECCCEEEHHH-----------H---HT---T----C---CCHH-HHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EEecCCCCHHH-----------H---Hh---c----C---CChH-HHHHHHH-----------------HHHHHHHHHHH
Confidence            99999875532           1   11   0    0   1111 1222221                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHH
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRA  238 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A  238 (267)
                      .        .++|+|++|+|||++++ +.+.|.++.+.+.....-|+.
T Consensus       148 ~--------givH~Dikp~NIll~~~-g~~kl~~~~~~~~~~~~~Di~  186 (286)
T 3uqc_A          148 A--------GVALSIDHPSRVRVSID-GDVVLAYPATMPDANPQDDIR  186 (286)
T ss_dssp             T--------TCCCCCCSGGGEEEETT-SCEEECSCCCCTTCCHHHHHH
T ss_pred             C--------CCccCCCCcccEEEcCC-CCEEEEeccccCCCCchhHHH
Confidence            1        48999999999999974 678888888887766777743

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=98.20  E-value=1.4e-05  Score=68.15  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=79.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--------------------------ccC-hHHHHHHHHH
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--------------------------FFN-RDDEIRTFEC   91 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--------------------------~~d-r~~E~~~~~~   91 (267)
                      -...|..|....||++....    .+..+.+|+.......                          ... ..+|+++++.
T Consensus        17 ~~~~lG~G~~g~Vy~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           17 LKDEIGKGSYGVVKLAYNEN----DNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             EEEEEEC--CCEEEEEEETT----TTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             EEeEEeecCCEEEEEEEECC----CCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            45677888889999997543    3578889987543200                          011 1468888877


Q ss_pred             HHhCCCCceEEEEEC---Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHh
Q 024452           92 MSSQGQGPRLLGRFG---DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAK  165 (267)
Q Consensus        92 l~~~gl~P~v~~~~~---~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~  165 (267)
                      +..-+ ..+++....   +.   +|+||++|.++..-.  .               .     .. .. ......+..   
T Consensus        93 l~h~~-iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~--~---------------~-----~~-~~-~~~~~~~~~---  144 (298)
T 2zv2_A           93 LDHPN-VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP--T---------------L-----KP-LS-EDQARFYFQ---  144 (298)
T ss_dssp             CCCTT-BCCEEEEEECSSSSEEEEEEECCTTCBSCCSS--C---------------S-----SC-CC-HHHHHHHHH---
T ss_pred             CCCCC-CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh--h---------------c-----CC-CC-HHHHHHHHH---
Confidence            75333 344555542   22   889999987765310  0               0     00 01 112222222   


Q ss_pred             hccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          166 SFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                    .+...+..|-+.        .++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       145 --------------qi~~~l~~lH~~--------~ivH~Dlkp~Nil~~~~-~~~kl~Dfg~~~  185 (298)
T 2zv2_A          145 --------------DLIKGIEYLHYQ--------KIIHRDIKPSNLLVGED-GHIKIADFGVSN  185 (298)
T ss_dssp             --------------HHHHHHHHHHHT--------TEECCCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------------HHHHHHHHHHHC--------CeeccCCCHHHEEECCC-CCEEEecCCCcc
Confidence                          122333444321        39999999999999874 689999999774

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.20  E-value=5.4e-06  Score=71.97  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=84.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      ..|..|....||++....    ++..+++|+.......   .....+|+.+++.+..+.-.++++..+.+.    +|+||
T Consensus        35 ~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~  110 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKS----TGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEY  110 (327)
T ss_dssp             EEEEEETTEEEEEEEETT----TCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ceeCCCCCeEEEEEEECC----CCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEe
Confidence            568888889999998643    3578999987543211   111246888888777655556677765432    88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++...-...                  .  ..... ...+..+..+                 +...+..|-+.  
T Consensus       111 ~~~~~L~~~~~~~------------------~--~~~~~-~~~~~~i~~q-----------------l~~~L~~LH~~--  150 (327)
T 3lm5_A          111 AAGGEIFSLCLPE------------------L--AEMVS-ENDVIRLIKQ-----------------ILEGVYYLHQN--  150 (327)
T ss_dssp             CTTEEGGGGGSSC------------------C---CCCC-HHHHHHHHHH-----------------HHHHHHHHHHT--
T ss_pred             cCCCcHHHHHHHh------------------c--ccCCC-HHHHHHHHHH-----------------HHHHHHHHHHC--
Confidence            9997664311000                  0  00011 1122222221                 22333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeC--CCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~--~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.||+++.  +.+.+.|+||+.+.
T Consensus       151 ------givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~  182 (327)
T 3lm5_A          151 ------NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR  182 (327)
T ss_dssp             ------TEECSCCCGGGEEESCBTTBCCEEECCGGGCE
T ss_pred             ------CeecCcCChHHEEEecCCCCCcEEEeeCcccc
Confidence                  3999999999999985  13579999999874

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=98.20  E-value=4.5e-06  Score=71.19  Aligned_cols=142  Identities=13%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEEC----C--eeE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFG----D--GRV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~----~--~~v  110 (267)
                      .+..|..|....||++.........+..+++|+...... .. ....+|+.+++.+...++ +++++...    +  .++
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~~~lv  103 (302)
T 4e5w_A           25 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENI-VKYKGICTEDGGNGIKLI  103 (302)
T ss_dssp             EEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTB-CCEEEEEEC---CCEEEE
T ss_pred             hhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCe-eeeeeEEecCCCceEEEE
Confidence            456778888899999974211112468899998764321 11 112478888888864444 34554432    2  178


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ..       .+ +.  .+    .+ ......+..                 .+...+..|-+
T Consensus       104 ~e~~~~~~L~~-------~l-------~~-~~--~~----~~-~~~~~~~~~-----------------~i~~~l~~lH~  144 (302)
T 4e5w_A          104 MEFLPSGSLKE-------YL-------PK-NK--NK----IN-LKQQLKYAV-----------------QICKGMDYLGS  144 (302)
T ss_dssp             EECCTTCBHHH-------HH-------HH-HT--TT----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EEeCCCCcHHH-------HH-------Hh-cc--cc----CC-HHHHHHHHH-----------------HHHHHHHHhhc
Confidence            99998865532       11       00 00  00    01 111222222                 12223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       145 --------~~i~H~dikp~Nil~~~~-~~~kl~Dfg~~~  174 (302)
T 4e5w_A          145 --------RQYVHRDLAARNVLVESE-HQVKIGDFGLTK  174 (302)
T ss_dssp             --------TTEECSCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             --------CCcccCCCchheEEEcCC-CCEEECcccccc
Confidence                    239999999999999874 689999999774

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=98.20  E-value=9.3e-06  Score=70.49  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      .-+..|..|....||++....    .+..+.+|+......  ......+|+.+++.+...++ .++++...++    +|+
T Consensus        10 ~i~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~~~~~~~~~~~~~lv~   84 (323)
T 3tki_A           10 DLVQTLGEGAYGEVQLAVNRV----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV-VKFYGHRREGNIQYLFL   84 (323)
T ss_dssp             EEEEEEEEETTEEEEEEEETT----TCCEEEEEEEECC-------CHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEEE
T ss_pred             eeeeEEecCCCEEEEEEEECC----CCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCC-CeEEEEEecCCeEEEEE
Confidence            346667888889999997543    357899998743321  11122578888888854443 4566665432    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+...-                 +.    ... .. ...+..+..+                 +...+..|-+ 
T Consensus        85 e~~~~~~L~~~l-----------------~~----~~~-~~-~~~~~~i~~q-----------------i~~aL~~LH~-  123 (323)
T 3tki_A           85 EYCSGGELFDRI-----------------EP----DIG-MP-EPDAQRFFHQ-----------------LMAGVVYLHG-  123 (323)
T ss_dssp             ECCTTEEGGGGS-----------------BT----TTB-CC-HHHHHHHHHH-----------------HHHHHHHHHH-
T ss_pred             EcCCCCcHHHHH-----------------hh----cCC-CC-HHHHHHHHHH-----------------HHHHHHHHHH-
Confidence            999987664311                 00    000 01 1122222221                 2233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|+||+++++ +.+.|+||+.|.
T Consensus       124 -------~givH~Dlkp~NIll~~~-~~~kl~Dfg~a~  153 (323)
T 3tki_A          124 -------IGITHRDIKPENLLLDER-DNLKISDFGLAT  153 (323)
T ss_dssp             -------TTEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             -------CCccccccchHHEEEeCC-CCEEEEEeeccc
Confidence                   239999999999999974 689999999874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=98.20  E-value=3.7e-06  Score=72.62  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEECC----e
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD----G  108 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~  108 (267)
                      .++ ...|..|....||++...      +..+.+|+......  ... ...+|+.+++.+...++ +++++.+.+    .
T Consensus        38 ~y~i~~~lG~G~~g~V~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~  110 (309)
T 3p86_A           38 DLNIKEKIGAGSFGTVHRAEWH------GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI-VLFMGAVTQPPNLS  110 (309)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET------TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTB-CCEEEEECSTTCCE
T ss_pred             HceeeeEeecCCCeEEEEEEEC------CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCE-eeEEEEEEECCceE
Confidence            344 556677888999999753      47889998754321  111 11368888888864333 456666542    2


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..       ..       .   ....  ..... ......+.                 ..+...+..|
T Consensus       111 lv~e~~~~~~L~~-------~l-------~---~~~~--~~~~~-~~~~~~i~-----------------~qi~~aL~~L  153 (309)
T 3p86_A          111 IVTEYLSRGSLYR-------LL-------H---KSGA--REQLD-ERRRLSMA-----------------YDVAKGMNYL  153 (309)
T ss_dssp             EEEECCTTCBHHH-------HH-------H---STTH--HHHSC-HHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEEecCCCCcHHH-------HH-------h---hcCC--CCCCC-HHHHHHHH-----------------HHHHHHHHHH
Confidence            8999999876532       01       0   0000  00000 01111111                 1122333333


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+      ....++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       154 H~------~~~~ivH~Dikp~NIll~~~-~~~kL~Dfg~a~  187 (309)
T 3p86_A          154 HN------RNPPIVHRNLKSPNLLVDKK-YTVKVCDFGLSR  187 (309)
T ss_dssp             HT------SSSCCCCTTCCGGGEEECTT-CCEEECCCC---
T ss_pred             Hc------CCCCEECCCCChhhEEEeCC-CcEEECCCCCCc
Confidence            32      11238999999999999874 689999999774

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.20  E-value=7.1e-06  Score=69.69  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=83.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      .-...|..|....||++....    .+..+++|+....... -...+|..+++.+......|.+.....  +.  ++++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~-~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 3uzp_A           12 RLGRKIGSGSFGDIYLGTDIA----AGEEVAIKLECVKTKH-PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             EEEEEEEEETTEEEEEEEETT----TTEEEEEEEEESCSSC-CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEccCCCeEEEEEEEcC----CCcEEEEEEecCCcch-hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence            345667778888999998543    3578999986543211 112489999999988777777665543  22  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      + |.++..              .+... .  .+    .+ ......+..                 .+...+..|-+   
T Consensus        87 ~-~~~L~~--------------~~~~~-~--~~----~~-~~~~~~i~~-----------------qi~~~l~~lH~---  123 (296)
T 3uzp_A           87 L-GPSLED--------------LFNFC-S--RK----FS-LKTVLLLAD-----------------QMISRIEYIHS---  123 (296)
T ss_dssp             C-CCBHHH--------------HHHHT-T--TC----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             c-CCCHHH--------------HHHhh-c--cC----CC-HHHHHHHHH-----------------HHHHHHHHHHh---
Confidence            8 544421              11110 0  00    11 111222222                 12233334432   


Q ss_pred             CCCCcEEEEccCCCCCCeeee--CCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMID--EETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~--~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++  ++++.+.|+||+.|.
T Consensus       124 -----~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  156 (296)
T 3uzp_A          124 -----KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             -----TTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             -----CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence                 1499999999999994  224679999999774

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=98.19  E-value=4.4e-06  Score=72.18  Aligned_cols=141  Identities=14%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC----C--ee
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG----D--GR  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~--~~  109 (267)
                      ..+..|..|....||++.........+..+++|+.......  .....+|+.+++.+...++ +++++...    .  .+
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHI-IKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEETTTTEEEE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcch-hhEEEEEecCCCceEEE
Confidence            35677888888999987643212224678999988654311  1112478888888874443 34555432    1  27


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|++|.++...              +   ....      .. ...+..+..                 .+...+..|-
T Consensus       113 v~e~~~~~~L~~~--------------l---~~~~------~~-~~~~~~i~~-----------------~l~~~l~~LH  151 (318)
T 3lxp_A          113 VMEYVPLGSLRDY--------------L---PRHS------IG-LAQLLLFAQ-----------------QICEGMAYLH  151 (318)
T ss_dssp             EECCCTTCBHHHH--------------G---GGSC------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEecccCCcHHHH--------------H---hhCC------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            8999988665321              0   0100      01 111222221                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.        .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       152 ~~--------~ivH~Dikp~Nil~~~~-~~~kl~Dfg~a~  182 (318)
T 3lxp_A          152 AQ--------HYIHRDLAARNVLLDND-RLVKIGDFGLAK  182 (318)
T ss_dssp             HT--------TEECSCCSGGGEEECTT-CCEEECCGGGCE
T ss_pred             hC--------CccCCCCchheEEEcCC-CCEEECCccccc
Confidence            21        39999999999999874 689999999774

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=98.18  E-value=7.7e-06  Score=69.60  Aligned_cols=139  Identities=17%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---------ccC-hHHHHHHHHHHHhCCCCceEEEEECC
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---------FFN-RDDEIRTFECMSSQGQGPRLLGRFGD  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---------~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~  107 (267)
                      .....|..|....||++....    .+..+++|+.......         ... ..+|+.+++.+..+.-.++++....+
T Consensus        20 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           20 EPKEILGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             ceeeeecCCCceEEEEEEEcC----cCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            345667788889999998643    3578999987543210         001 13678888888655445566666542


Q ss_pred             e----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          108 G----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       108 ~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      .    +|+||++|.++..       ...       + + ..      .+ ...+..+..                 .+..
T Consensus        96 ~~~~~lv~e~~~~~~L~~-------~l~-------~-~-~~------~~-~~~~~~~~~-----------------qi~~  135 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFD-------YLT-------E-K-VT------LS-EKETRKIMR-----------------ALLE  135 (298)
T ss_dssp             SSEEEEEEECCTTCBHHH-------HHH-------H-H-SS------CC-HHHHHHHHH-----------------HHHH
T ss_pred             CCeEEEEEeccCCCcHHH-------HHh-------c-c-CC------CC-HHHHHHHHH-----------------HHHH
Confidence            2    8899999865531       111       0 0 00      01 111222222                 1223


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..|.+        ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       136 ~l~~lH~--------~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~~  172 (298)
T 1phk_A          136 VICALHK--------LNIVHRDLKPENILLDDD-MNIKLTDFGFSC  172 (298)
T ss_dssp             HHHHHHH--------TTEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHHHHHH--------CCcccCCCCcceEEEcCC-CcEEEecccchh
Confidence            3334432        139999999999999874 689999999774

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=98.18  E-value=3.7e-06  Score=70.90  Aligned_cols=137  Identities=14%  Similarity=0.049  Sum_probs=78.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      -...|..|....||++....    .+..+++|..........+ ..+|+.+++.+...++ +++++.+.++    +|++|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A           13 LENTIGRGSWGEVKIAVQKG----TRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNI-IRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTB-CCEEEEEECSSEEEEEEEC
T ss_pred             eeeEEeecCCEEEEEEEeCC----CCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCE-eeEEEEEecCCeEEEEEec
Confidence            34567778889999998643    3467778776432211111 1478888887744333 4566655422    88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..          .+    ..  ...      .. ......+..                 .+...+..|.+   
T Consensus        88 ~~~~~L~~----------~~----~~--~~~------~~-~~~~~~i~~-----------------~i~~~l~~lH~---  124 (277)
T 3f3z_A           88 CTGGELFE----------RV----VH--KRV------FR-ESDAARIMK-----------------DVLSAVAYCHK---  124 (277)
T ss_dssp             CCSCBHHH----------HH----HH--HCS------CC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             cCCCcHHH----------HH----HH--cCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH---
Confidence            98865531          01    00  000      01 111222221                 12233344432   


Q ss_pred             CCCCcEEEEccCCCCCCeee---eCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMI---DEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv---~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||++   ++ ++.+.|+||+.+.
T Consensus       125 -----~~i~H~dlkp~Nil~~~~~~-~~~~~l~Dfg~~~  157 (277)
T 3f3z_A          125 -----LNVAHRDLKPENFLFLTDSP-DSPLKLIDFGLAA  157 (277)
T ss_dssp             -----TTEECCCCSGGGEEESSSST-TCCEEECCCTTCE
T ss_pred             -----CCccCCCCCHHHEEEecCCC-CCcEEEEecccce
Confidence                 139999999999999   44 4679999999774

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=98.18  E-value=2.6e-06  Score=75.12  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~  109 (267)
                      ..+..|..|....||++....    .+..|.+|+.....    .......+|..+++.+. +...++++..+.+.    +
T Consensus        44 ~~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~l  118 (350)
T 1rdq_E           44 DRIKTLGTGSFGRVMLVKHKE----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN-FPFLVKLEFSFKDNSNLYM  118 (350)
T ss_dssp             EEEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC-CTTBCCEEEEEECSSEEEE
T ss_pred             EEEEEeecCcCcEEEEEEECC----CCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCC-CCCCCeEEEEEEcCCEEEE
Confidence            346677888889999998643    35789999874321    01111135666666553 22334566655422    8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..              .+.+-..  .      . ......+..+                 +...++.|-
T Consensus       119 v~e~~~gg~L~~--------------~l~~~~~--~------~-~~~~~~~~~q-----------------i~~aL~~LH  158 (350)
T 1rdq_E          119 VMEYVAGGEMFS--------------HLRRIGR--F------S-EPHARFYAAQ-----------------IVLTFEYLH  158 (350)
T ss_dssp             EEECCTTCBHHH--------------HHHHHCC--C------C-HHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEcCCCCCcHHH--------------HHHHcCC--C------C-HHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999865431              1111100  0      0 1112222221                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       159 ~--------~~ivHrDlkp~NIll~~~-g~~kL~DFg~a~  189 (350)
T 1rdq_E          159 S--------LDLIYRDLKPENLLIDQQ-GYIQVTDFGFAK  189 (350)
T ss_dssp             H--------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             H--------CCcccccCccceEEECCC-CCEEEcccccce
Confidence            2        239999999999999874 689999999874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=98.17  E-value=8.5e-06  Score=73.14  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=84.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....   ....+ ...|..++..+.++...+++++.+.+.    +|
T Consensus        56 ~~~~LG~G~fG~V~~~~~~~----~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV  131 (396)
T 4dc2_A           56 LLRVIGRGSYAKVLLVRLKK----TDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV  131 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence            35667788889999998653    35788888865321   11111 247888888876666566677765432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-.  ..      . ......|..+                 +...++.|-+
T Consensus       132 ~E~~~gg~L~~--------------~l~~~~--~l------~-~~~~~~~~~q-----------------i~~aL~~LH~  171 (396)
T 4dc2_A          132 IEYVNGGDLMF--------------HMQRQR--KL------P-EEHARFYSAE-----------------ISLALNYLHE  171 (396)
T ss_dssp             EECCTTCBHHH--------------HHHHHS--SC------C-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEcCCCCcHHH--------------HHHHcC--CC------C-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865521              011100  00      0 1122222222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       172 ~--------givHrDLKp~NILl~~~-g~ikL~DFGla~  201 (396)
T 4dc2_A          172 R--------GIIYRDLKLDNVLLDSE-GHIKLTDYGMCK  201 (396)
T ss_dssp             T--------TCBCCCCCGGGEEECTT-SCEEECCCTTCB
T ss_pred             C--------CEEeccCCHHHEEECCC-CCEEEeecceee
Confidence            1        38999999999999874 789999999875

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=98.17  E-value=6.1e-06  Score=71.64  Aligned_cols=139  Identities=14%  Similarity=0.088  Sum_probs=81.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      -...|..|....||++....    .+..+.+|+............+|+.+++.+..-++ ++++..+.  +.  +|+||+
T Consensus         9 ~~~~lG~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A            9 IAEDLGRGEFGIVHRCVETS----SKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNI-LHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTB-CCEEEEEEETTEEEEEECCC
T ss_pred             eeeEEecCCCeEEEEEEECC----CCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCC-CeEeEEEecCCEEEEEEEeC
Confidence            45667788889999998643    35788888875433221122478888887754333 44555543  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..              .   ++....+    .+ ......+..                 .+...+..+-+    
T Consensus        84 ~g~~L~~--------------~---l~~~~~~----~~-~~~~~~i~~-----------------qi~~al~~lH~----  120 (321)
T 1tki_A           84 SGLDIFE--------------R---INTSAFE----LN-EREIVSYVH-----------------QVCEALQFLHS----  120 (321)
T ss_dssp             CCCBHHH--------------H---HTSSSCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCCHHH--------------H---HHhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            9855421              0   1111100    11 112222222                 12233344432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||++.+ ++.+.|+||+.+.
T Consensus       121 ----~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~  152 (321)
T 1tki_A          121 ----HNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR  152 (321)
T ss_dssp             ----TTEECCCCCGGGEEESSSSCCCEEECCCTTCE
T ss_pred             ----CCCCcCCCCHHHEEEccCCCCCEEEEECCCCe
Confidence                249999999999999852 3579999999874

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.16  E-value=8.2e-06  Score=70.81  Aligned_cols=138  Identities=12%  Similarity=-0.020  Sum_probs=83.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      .-...|..|....||++....    .+..+++|+...... .-...+|+.+++.+..+.-.+++++...+    .+|++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A           12 RVGKKIGCGNFGELRLGKNLY----TNEYVAIKLEPMKSR-APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             EEEEECCC-CTTSEEEEEETT----TTEEEEEEEEETTCS-SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEeeccCCceEEEEEECC----CCcEEEEEEeccccc-hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence            346667888889999998543    357899998754321 11235899999999666556677776542    288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      + |.++..              .+... ...      .. ......+..                 .+...++.|-+.  
T Consensus        87 ~-~~~L~~--------------~~~~~-~~~------~~-~~~~~~i~~-----------------qi~~~l~~LH~~--  124 (330)
T 2izr_A           87 L-GPSLED--------------LFDLC-DRT------FS-LKTVLMIAI-----------------QLISRMEYVHSK--  124 (330)
T ss_dssp             C-CCBHHH--------------HHHHT-TTC------CC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             C-CCCHHH--------------HHHHc-CCC------CC-HHHHHHHHH-----------------HHHHHHHHHHhC--
Confidence            8 654431              11111 000      11 111222222                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCC-----EEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSS-----ITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~-----v~lIDwE~a~  229 (267)
                            .++|+|++|.|||++.+ +.     +.|+||..|.
T Consensus       125 ------~iiHrDlkp~Nill~~~-~~~~~~~~kl~DFg~a~  158 (330)
T 2izr_A          125 ------NLIYRDVKPENFLIGRP-GNKTQQVIHIIDFALAK  158 (330)
T ss_dssp             ------TEECCCCCGGGEEECCG-GGTCTTSEEECCCTTCE
T ss_pred             ------CeeccCCCHHHeeeccC-CCCCCceEEEEEcccce
Confidence                  49999999999999864 33     9999999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.16  E-value=2.8e-06  Score=71.14  Aligned_cols=138  Identities=18%  Similarity=0.086  Sum_probs=82.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      -...|..|....||++....     +..+++|+........-+..+|+.+++.+...+ .+++++.+.+    .++++|+
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~   85 (267)
T 3t9t_A           12 FVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICLVTEFM   85 (267)
T ss_dssp             EEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSCEEEECCC
T ss_pred             eeeEecCCCceeEEEEEecC-----CCeEEEEEccccCCCHHHHHHHHHHHHhCCCCC-EeeEEEEEccCCCeEEEEeCC
Confidence            45666778888999998642     468999988654322112247888887774333 3556666542    2889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .+   ...+    .+ ...+..+..                 .+...+..+.+    
T Consensus        86 ~~~~L~~-------~~-------~~---~~~~----~~-~~~~~~~~~-----------------~i~~~l~~lH~----  122 (267)
T 3t9t_A           86 EHGCLSD-------YL-------RT---QRGL----FA-AETLLGMCL-----------------DVCEGMAYLEE----  122 (267)
T ss_dssp             TTCBHHH-------HH-------HH---TTTC----CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCcHHH-------HH-------hh---Cccc----CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8865531       11       10   0000    01 112222221                 12223334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                          ..++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       123 ----~~i~H~dl~p~Nili~~~-~~~kl~dfg~~~~  153 (267)
T 3t9t_A          123 ----ACVIHRDLAARNCLVGEN-QVIKVSDFGMTRF  153 (267)
T ss_dssp             ----TTCCCSSCCGGGEEECGG-GCEEECCTTGGGG
T ss_pred             ----CCcccCCCchheEEECCC-CCEEEcccccccc
Confidence                138999999999999874 6899999998753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=98.16  E-value=4.4e-06  Score=72.39  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEEC--C----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFG--D----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~----~~v~  111 (267)
                      -+..|..|....||++.........+..+++|+......... ...+|+.+++.+...++ +++++...  +    .+|+
T Consensus        45 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~lv~  123 (326)
T 2w1i_A           45 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI-VKYKGVCYSAGRRNLKLIM  123 (326)
T ss_dssp             EEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTB-CCEEEEECC----CCEEEE
T ss_pred             eeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCe-eeEEEEEEecCCCceEEEE
Confidence            356778888899999974211112367889998765432211 22478888887754333 34555432  1    2789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       .       +.+   ...  .  .+ ...+..+..                 .+...+..|-+ 
T Consensus       124 e~~~~~~L~~-------~-------l~~---~~~--~--~~-~~~~~~i~~-----------------qi~~aL~~LH~-  163 (326)
T 2w1i_A          124 EYLPYGSLRD-------Y-------LQK---HKE--R--ID-HIKLLQYTS-----------------QICKGMEYLGT-  163 (326)
T ss_dssp             CCCTTCBHHH-------H-------HHH---STT--S--SC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             ECCCCCCHHH-------H-------HHh---ccc--C--CC-HHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            9998865532       1       111   000  0  11 111222221                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       164 -------~~ivH~dikp~NIli~~~-~~~kL~Dfg~~~  193 (326)
T 2w1i_A          164 -------KRYIHRDLATRNILVENE-NRVKIGDFGLTK  193 (326)
T ss_dssp             -------TTEECSCCCGGGEEEEET-TEEEECCCTTCE
T ss_pred             -------CCEeccCCCcceEEEcCC-CcEEEecCcchh
Confidence                   248999999999999974 689999999774

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=98.15  E-value=5.6e-06  Score=72.85  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -...|..|....||++....    .+..|.+|+.....    ........|..++..+.++...+++++.+.+.    +|
T Consensus        21 ~~~~lG~G~fg~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv   96 (345)
T 1xjd_A           21 LHKMLGKGSFGKVFLAEFKK----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   96 (345)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEE
Confidence            45667788889999998653    35789999875321    11111236777777775665566677766432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-+..        . ......+..                 .+...++.|-+
T Consensus        97 ~E~~~gg~L~~--------------~l~~~~~~--------~-~~~~~~~~~-----------------qi~~aL~~LH~  136 (345)
T 1xjd_A           97 MEYLNGGDLMY--------------HIQSCHKF--------D-LSRATFYAA-----------------EIILGLQFLHS  136 (345)
T ss_dssp             EECCTTCBHHH--------------HHHHHSSC--------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHHcCCC--------C-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865531              11111110        1 111222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       137 --------~~ivHrDlkp~NIll~~~-g~vkL~DFG~a~  166 (345)
T 1xjd_A          137 --------KGIVYRDLKLDNILLDKD-GHIKIADFGMCK  166 (345)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCCTTCB
T ss_pred             --------CCeEeCCCChhhEEECCC-CCEEEeEChhhh
Confidence                    138999999999999874 689999999875

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=98.14  E-value=3.4e-06  Score=72.16  Aligned_cols=137  Identities=21%  Similarity=0.195  Sum_probs=79.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....   ..... ..+|+.+++.+..-++ ++++..+.+ +   +|
T Consensus        15 i~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-v~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           15 IVDKLGGGGMSTVYLAEDTI----LNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNI-VSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTB-CCEEEEEECSSEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECC----CCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCC-ceEEEeeeeCCeEEEE
Confidence            46677778889999997543    35788888763321   11111 1356666666643333 456665542 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       .+ +.   +    .. ......+..+                 +...+..+.+
T Consensus        90 ~e~~~g~~L~~-------~l-------~~-~~---~----~~-~~~~~~~~~q-----------------i~~~l~~lH~  129 (294)
T 4eqm_A           90 MEYIEGPTLSE-------YI-------ES-HG---P----LS-VDTAINFTNQ-----------------ILDGIKHAHD  129 (294)
T ss_dssp             EECCCSCBHHH-------HH-------HH-HC---S----CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCCHHH-------HH-------Hh-cC---C----CC-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876532       11       10 00   0    01 1112222221                 2223333432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       130 --------~~i~H~Dlkp~Nil~~~~-~~~kl~Dfg~~~  159 (294)
T 4eqm_A          130 --------MRIVHRDIKPQNILIDSN-KTLKIFDFGIAK  159 (294)
T ss_dssp             --------TTCCCCCCCGGGEEECTT-SCEEECCCSSST
T ss_pred             --------CCcccCCCCHHHEEECCC-CCEEEEeCCCcc
Confidence                    138999999999999874 689999999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=98.13  E-value=3.8e-06  Score=73.84  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=83.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....   ..... ...|..+++.+.++....++++.+.+  .  +|
T Consensus        13 ~~~~lG~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A           13 LLRVIGRGSYAKVLLVRLKK----TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEEecCCeEEEEEEECC----CCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            45667788889999998653    35788999875431   11111 13677777776555555667766542  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-.  ..     +  ......+..+                 +...++.|-+
T Consensus        89 ~e~~~gg~L~~--------------~l~~~~--~l-----~--~~~~~~~~~q-----------------i~~aL~~LH~  128 (345)
T 3a8x_A           89 IEYVNGGDLMF--------------HMQRQR--KL-----P--EEHARFYSAE-----------------ISLALNYLHE  128 (345)
T ss_dssp             ECCCCSCBHHH--------------HHHHHS--SC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHHcC--CC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865531              111100  00     0  1122222221                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       129 --------~~ivHrDlkp~NIll~~~-g~~kL~DFG~a~  158 (345)
T 3a8x_A          129 --------RGIIYRDLKLDNVLLDSE-GHIKLTDYGMCK  158 (345)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCGGGCB
T ss_pred             --------CCceecCCCHHHEEECCC-CCEEEEeccccc
Confidence                    138999999999999874 689999999875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=98.13  E-value=4.6e-06  Score=71.15  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=78.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEEC-Ce---eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFG-DG---RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~---~v~e~  113 (267)
                      -+..|..|....||++....    .+..+++|+........ ....+|+.+++.+..-++ +++++.+. ++   +|++|
T Consensus        23 i~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           23 IVGELGDGAFGKVYKAKNKE----TGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI-VKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             EEEEEECSTTCCEEEEEETT----TCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTB-CCEEEEEECC-CEEEEEEC
T ss_pred             ecceeccCCCeEEEEEEEcC----CCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCE-eeeeeeeeeCCeEEEEEEe
Confidence            35667788889999998653    35788899875443221 112467888877743333 44555543 22   88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .+.+. .      .. ...+..+..                 .+...+..|.+   
T Consensus        98 ~~~~~l~~-------~~-------~~~~~-~------~~-~~~~~~~~~-----------------~i~~~l~~lH~---  135 (302)
T 2j7t_A           98 CPGGAVDA-------IM-------LELDR-G------LT-EPQIQVVCR-----------------QMLEALNFLHS---  135 (302)
T ss_dssp             CTTEEHHH-------HH-------HHHTS-C------CC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             CCCCcHHH-------HH-------Hhhcc-C------CC-HHHHHHHHH-----------------HHHHHHHHHhc---
Confidence            98865531       11       11110 0      01 111222222                 12233334432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                           ..++|+|++|.||+++.+ +.+.|+||+.+
T Consensus       136 -----~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~  164 (302)
T 2j7t_A          136 -----KRIIHRDLKAGNVLMTLE-GDIRLADFGVS  164 (302)
T ss_dssp             -----TTCCCCCCSGGGEEECTT-SCEEECCCHHH
T ss_pred             -----CCcccCCCCHHHEEECCC-CCEEEEECCCC
Confidence                 148999999999999874 68999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=98.13  E-value=4.5e-06  Score=71.60  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=80.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..|..|....||++....    .+..+++|+.......  ... ..+|+.+++.+...++ +++++...  +.  +|+
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            7 KIGKIGEGSYGVVFKCRNRD----TGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNL-VNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEETTEEEEEE
T ss_pred             EeeEEeecCCeEEEEEEeCC----CCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCc-cchhheeecCCeEEEEE
Confidence            46677888889999998643    3578889976543211  111 1367888877764443 44555543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+..           +   +.   . ..+    .. ...+..+..                 .+...+..|-+ 
T Consensus        82 e~~~~~~l~~-----------~---~~---~-~~~----~~-~~~~~~i~~-----------------~l~~~l~~lH~-  120 (311)
T 4agu_A           82 EYCDHTVLHE-----------L---DR---Y-QRG----VP-EHLVKSITW-----------------QTLQAVNFCHK-  120 (311)
T ss_dssp             ECCSEEHHHH-----------H---HH---T-SSC----CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EeCCCchHHH-----------H---Hh---h-hcC----CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9998744321           0   10   0 000    01 111222221                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       121 -------~~ivH~dlkp~Nil~~~~-~~~kl~Dfg~~~  150 (311)
T 4agu_A          121 -------HNCIHRDVKPENILITKH-SVIKLCDFGFAR  150 (311)
T ss_dssp             -------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             -------CCCcCCCCChhhEEEcCC-CCEEEeeCCCch
Confidence                   138999999999999874 689999999874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=98.13  E-value=7.9e-06  Score=72.16  Aligned_cols=139  Identities=15%  Similarity=0.075  Sum_probs=81.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~  113 (267)
                      .-+..|..|....||++....    .+..+.+|+............+|+.+++.+...++ .+++..+.+  .  +|+||
T Consensus        23 ~~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           23 DFVKDIGSGNFGVARLMRDKL----TKELVAVKYIERGAAIDENVQREIINHRSLRHPNI-VRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             EEEEEESSSTTSSEEEEEETT----TCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEeccCCCEEEEEEEECC----CCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCC-CcEEEEEeeCCEEEEEEEe
Confidence            345677888889999998643    35789999875433211112478888887764343 445655432  2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .+  ....      . ...+..+..+                 +...+..|-+   
T Consensus        98 ~~~~~L~~-------~l-------~~--~~~~------~-~~~~~~i~~q-----------------l~~~L~~LH~---  134 (361)
T 3uc3_A           98 ASGGELYE-------RI-------CN--AGRF------S-EDEARFFFQQ-----------------LLSGVSYCHS---  134 (361)
T ss_dssp             CCSCBHHH-------HH-------HH--HSSC------C-HHHHHHHHHH-----------------HHHHHHHHHH---
T ss_pred             CCCCCHHH-------HH-------Hh--cCCC------C-HHHHHHHHHH-----------------HHHHHHHHHH---
Confidence            98865521       01       00  0000      1 1122222221                 2233344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCC-CCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEET-SSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~-~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.||+++.++ +.+.|+||..|.
T Consensus       135 -----~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A          135 -----MQICHRDLKLENTLLDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             -----TTCCSCCCCGGGEEECSSSSCCEEECCCCCC-
T ss_pred             -----CCcccCCCCHHHEEEcCCCCceEEEeecCccc
Confidence                 2399999999999998642 248999999775

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.12  E-value=8.1e-06  Score=71.10  Aligned_cols=146  Identities=15%  Similarity=0.103  Sum_probs=80.3

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----  108 (267)
                      +.++ ...|..|....||++......+..+..+.+|+.......  ..+..+|+.+++.+...+ .+++++...+.    
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN-IIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEecCCCcE
Confidence            3344 466777888999998754321111245889987654211  111236777777664333 35566665432    


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..       ..       .+ +.  .  .  .. ...+..+..                 .+...+..|
T Consensus       123 lv~e~~~~~~L~~-------~l-------~~-~~--~--~--~~-~~~~~~i~~-----------------qi~~aL~~L  163 (333)
T 1mqb_A          123 IITEYMENGALDK-------FL-------RE-KD--G--E--FS-VLQLVGMLR-----------------GIAAGMKYL  163 (333)
T ss_dssp             EEEECCTTEEHHH-------HH-------HH-TT--T--C--SC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEeCCCCCcHHH-------HH-------Hh-CC--C--C--CC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            8899999865531       11       11 00  0  0  11 111222221                 222333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -+.        .++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       164 H~~--------~ivH~Dikp~NIl~~~~-~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          164 ANM--------NYVHRDLAARNILVNSN-LVCKVSDFGLSRV  196 (333)
T ss_dssp             HHT--------TCCCSCCCGGGEEECTT-CCEEECCCCC---
T ss_pred             HhC--------CeeCCCCChheEEECCC-CcEEECCCCcchh
Confidence            321        38999999999999874 6899999998753

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=98.12  E-value=7.1e-06  Score=70.13  Aligned_cols=137  Identities=12%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ..+..|..|....||++....    .+..+++|+..... .. .....+|+.+++.+.... .+++++...  +.  +|+
T Consensus        25 ~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           25 TKLEKIGKGSFGEVFKGIDNR----TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY-VTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             EEEEEEEECSSSEEEEEEETT----TCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             HHhhhhcccCCeEEEEEEECC----CCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEecCCeEEEEE
Confidence            346777888889999997543    35789999875432 11 111246777777764333 345555542  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       .       +   ...    .  .+ ...+..+..                 .+...+..|.+.
T Consensus       100 e~~~~~~L~~-------~-------~---~~~----~--~~-~~~~~~~~~-----------------qi~~~l~~lH~~  138 (303)
T 3a7i_A          100 EYLGGGSALD-------L-------L---EPG----P--LD-ETQIATILR-----------------EILKGLDYLHSE  138 (303)
T ss_dssp             ECCTTEEHHH-------H-------H---TTS----C--CC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             EeCCCCcHHH-------H-------H---hcC----C--CC-HHHHHHHHH-----------------HHHHHHHHHHHC
Confidence            9999865431       1       1   010    0  11 111222222                 122333344321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       139 --------~i~H~dl~p~Nil~~~~-~~~kl~Dfg~~~  167 (303)
T 3a7i_A          139 --------KKIHRDIKAANVLLSEH-GEVKLADFGVAG  167 (303)
T ss_dssp             --------TEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------CCccCCCChheEEECCC-CCEEEeecccce
Confidence                    38999999999999874 689999999873

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=98.11  E-value=1e-05  Score=70.33  Aligned_cols=154  Identities=17%  Similarity=0.153  Sum_probs=85.7

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECC--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGD--  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--  107 (267)
                      +..+ ...|..|....||++......   ...+..+.+|+...... . .....+|+.+++.+.++.-.+++++.+.+  
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  114 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  114 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC
Confidence            4444 466777888999999753210   01346789998765431 1 11124788888888655545667776643  


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC-------CchhHHHHHHHHHHHhhccCcccccccch
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-------KALLWDRLRKWVSVAKSFCSAKDAKEFCL  178 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  178 (267)
                        .+|++|++|.++..              .+.+-.........       ..-....+..+.                 
T Consensus       115 ~~~lv~e~~~~~~L~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------------  163 (334)
T 2pvf_A          115 PLYVIVEYASKGNLRE--------------YLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT-----------------  163 (334)
T ss_dssp             CCEEEEECCTTCBHHH--------------HHHTTSCTTCCSCC--------CCCHHHHHHHH-----------------
T ss_pred             ceEEEEECCCCCcHHH--------------HHHHhccccccccccccccccccCCHHHHHHHH-----------------
Confidence              28999999866532              11111110000000       000011111111                 


Q ss_pred             hhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       179 ~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+...+..|-+        ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       164 ~qi~~aL~~LH~--------~~ivH~Dlkp~NIll~~~-~~~kL~Dfg~~~  205 (334)
T 2pvf_A          164 YQLARGMEYLAS--------QKCIHRDLAARNVLVTEN-NVMKIADFGLAR  205 (334)
T ss_dssp             HHHHHHHHHHHH--------TTEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHHHHHHHHHHh--------CCeeCCCCccceEEEcCC-CCEEEccccccc
Confidence            122233333332        249999999999999874 689999998764

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=98.11  E-value=8.3e-06  Score=70.91  Aligned_cols=140  Identities=13%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~  109 (267)
                      -+..|..|....||++..... ...+..+.+|+.....     .......+|..+++.+..-++ +++++.+.+ +   +
T Consensus        21 ~~~~lG~G~~g~V~~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~l   98 (327)
T 3a62_A           21 LLRVLGKGGYGKVFQVRKVTG-ANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI-VDLIYAFQTGGKLYL   98 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECSS-TTTTCEEEEEEECCC--------------HHHHHHHCCCTTB-CCEEEEEECSSCEEE
T ss_pred             EEEEEEeCCCEEEEEEEEecc-CCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCc-cceeEEEEcCCEEEE
Confidence            455667788899999975311 1135788999875431     111112468888888764333 445555432 2   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..              .+.+-..        .. ......+..                 .+...+..|.
T Consensus        99 v~e~~~~~~L~~--------------~l~~~~~--------~~-~~~~~~~~~-----------------qi~~al~~lH  138 (327)
T 3a62_A           99 ILEYLSGGELFM--------------QLEREGI--------FM-EDTACFYLA-----------------EISMALGHLH  138 (327)
T ss_dssp             EEECCTTEEHHH--------------HHHHHSS--------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEeCCCCCcHHH--------------HHHhCCC--------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999865421              1111000        00 111222222                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       139 ~--------~~ivH~Dlkp~Nill~~~-~~~kl~Dfg~~~  169 (327)
T 3a62_A          139 Q--------KGIIYRDLKPENIMLNHQ-GHVKLTDFGLCK  169 (327)
T ss_dssp             H--------TTCCCCCCCTTTEEECTT-SCEEECCCSCC-
T ss_pred             h--------CCEEcccCCHHHeEECCC-CcEEEEeCCccc
Confidence            2        138999999999999874 689999999875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=98.11  E-value=9.4e-06  Score=69.46  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=51.9

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -...|..|....||++..... ....+..+++|+.......  .....+|+.+++.+.++.-.+++++...++    +|+
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~  106 (313)
T 1t46_A           27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (313)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEE
Confidence            355667787889999974210 0113578899987654311  111247888888885554456677766432    889


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      ||++|.++.
T Consensus       107 e~~~~~~L~  115 (313)
T 1t46_A          107 EYCCYGDLL  115 (313)
T ss_dssp             ECCTTEEHH
T ss_pred             ecCCCCCHH
Confidence            999986653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.10  E-value=5.9e-06  Score=71.22  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=25.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+||+++.+ +.+.|+||..|.
T Consensus       184 ~ivH~Dlkp~NIll~~~-~~~kL~DfG~a~  212 (332)
T 3qd2_B          184 GLMHRDLKPSNIFFTMD-DVVKVGDFGLVT  212 (332)
T ss_dssp             TEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             CeeecCCCcccEEEeCC-CCEEEeecCccc
Confidence            49999999999999974 689999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=98.10  E-value=2.6e-05  Score=67.45  Aligned_cols=144  Identities=16%  Similarity=0.235  Sum_probs=81.4

Q ss_pred             cEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEE
Q 024452           37 ALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVE  111 (267)
Q Consensus        37 ~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~  111 (267)
                      -..+..|..|..+.||++..........-++++|......  .......+|+.+++.+..-+ .+++++...+.   +|+
T Consensus        15 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~v~   93 (325)
T 3kex_A           15 LRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAH-IVRLLGLCPGSSLQLVT   93 (325)
T ss_dssp             EEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTT-BCCEEEEECBSSEEEEE
T ss_pred             ceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCC-cCeEEEEEcCCccEEEE
Confidence            3446677888889999998643110011247777764332  11222246787777664333 35566666533   889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++...       .       .+ +....  .  .   ..+..+..+                 +...+..|-+.
T Consensus        94 e~~~~~~L~~~-------l-------~~-~~~~~--~--~---~~~~~~~~q-----------------i~~~l~~lH~~  134 (325)
T 3kex_A           94 QYLPLGSLLDH-------V-------RQ-HRGAL--G--P---QLLLNWGVQ-----------------IAKGMYYLEEH  134 (325)
T ss_dssp             ECCTTCBSHHH-------H-------HS-SGGGS--C--T---THHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EeCCCCCHHHH-------H-------HH-ccccC--C--H---HHHHHHHHH-----------------HHHHHHHHHhC
Confidence            99998766321       0       00 00000  0  0   112222221                 22333344321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       135 --------~ivH~Dikp~Nil~~~~-~~~kl~Dfg~a~  163 (325)
T 3kex_A          135 --------GMVHRNLAARNVLLKSP-SQVQVADFGVAD  163 (325)
T ss_dssp             --------TCCCSCCSSTTEEESSS-SCEEECSCSGGG
T ss_pred             --------CCCCCccchheEEECCC-CeEEECCCCccc
Confidence                    38999999999999874 689999999874

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.10  E-value=1.3e-05  Score=67.98  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=82.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      .-...|..|....||++....    .+..+++|+...... ......|..+++.+......+.+.....  +.  ++++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 4hgt_A           12 RLGRKIGSGSFGDIYLGTDIA----AGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             EEEEEEEECSSSEEEEEEETT----TTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             EEeeeecCCCCeEEEEEEEcC----CCceEEEEeeccccc-chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence            346667888889999998543    357899997543321 1123589999999988777776665543  22  78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      + |.++..              .+...   ..+    .. ......+..                 .+...+..|-+.  
T Consensus        87 ~-~~~L~~--------------~~~~~---~~~----~~-~~~~~~i~~-----------------qi~~~l~~LH~~--  124 (296)
T 4hgt_A           87 L-GPSLED--------------LFNFC---SRK----FS-LKTVLLLAD-----------------QMISRIEYIHSK--  124 (296)
T ss_dssp             C-CCBHHH--------------HHHHT---TSC----CC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             c-CCCHHH--------------HHHHh---cCC----CC-HHHHHHHHH-----------------HHHHHHHHHHHC--
Confidence            8 544431              11100   000    11 111222222                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeee---eCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMI---DEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv---~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.||++   ++ ++.+.|+||..|.
T Consensus       125 ------~ivH~Dlkp~NIl~~~~~~-~~~~kL~Dfg~a~  156 (296)
T 4hgt_A          125 ------NFIHRDVKPDNFLMGLGKK-GNLVYIIDFGLAK  156 (296)
T ss_dssp             ------TEECSCCSGGGEEECCGGG-TTCEEECCCTTCE
T ss_pred             ------CeecCCCCHHHeeeeccCC-CCeEEEecCccce
Confidence                  39999999999999   44 4679999999874

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=98.10  E-value=4.5e-06  Score=72.49  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..|..|....||++....    .+..+++|+.......  ... ..+|+.+++.+...++ +++++.+.  +.  +|+
T Consensus        29 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           29 NLGLVGEGSYGMVMKCRNKD----TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENL-VNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             EEEEGGGGTTSSEEEEEETT----TCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEETTEEEEEE
T ss_pred             eeeEEeecCCEEEEEEEECC----CCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCE-eeEEEEeecCCEEEEEE
Confidence            45667888889999998643    3578899976433211  111 1368888887764333 45565543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+..           +   +    ....  .  .. ...+..+..+                 +...+..|.+.
T Consensus       104 e~~~~~~l~~-----------~---~----~~~~--~--~~-~~~~~~~~~q-----------------i~~~l~~LH~~  143 (331)
T 4aaa_A          104 EFVDHTILDD-----------L---E----LFPN--G--LD-YQVVQKYLFQ-----------------IINGIGFCHSH  143 (331)
T ss_dssp             ECCSEEHHHH-----------H---H----HSTT--C--CC-HHHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             ecCCcchHHH-----------H---H----hhcc--C--CC-HHHHHHHHHH-----------------HHHHHHHHHHC
Confidence            9998754421           0   0    0000  0  01 1122222221                 22233344321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       144 --------~ivH~dlkp~Nil~~~~-~~~kl~Dfg~~~  172 (331)
T 4aaa_A          144 --------NIIHRDIKPENILVSQS-GVVKLCDFGFAR  172 (331)
T ss_dssp             --------TCCCCCCCGGGEEECTT-SCEEECCCTTC-
T ss_pred             --------CEEccCcChheEEEcCC-CcEEEEeCCCce
Confidence                    38999999999999874 689999999874

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=98.09  E-value=9e-06  Score=68.53  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=80.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC------------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG------------  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~------------  106 (267)
                      .+..|..|....||++....    ++..+++|+.......   ..+|+.+++.+..-.+. ++++...            
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~---~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~   86 (284)
T 2a19_B           15 EIELIGSGGFGQVFKAKHRI----DGKTYVIKRVKYNNEK---AEREVKALAKLDHVNIV-HYNGCWDGFDYDPETSSKN   86 (284)
T ss_dssp             EEEEEECSSSCCEEEEEETT----TCCEEEEEEEECCSGG---GHHHHHHHHHCCCTTBC-CEEEEEEEEEEC-------
T ss_pred             eeeeeccCCceEEEEEEEcC----CCeEEEEEEeccccHH---HHHHHHHHHhCCCCCEE-EEeeeEeccccCccccccc
Confidence            45667888889999998643    3578999987654332   24789998888654443 3333221            


Q ss_pred             -----C---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccch
Q 024452          107 -----D---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCL  178 (267)
Q Consensus       107 -----~---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  178 (267)
                           .   .+++||++|.++..              .+.+-....      .+ ......+..                
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~--------------~l~~~~~~~------~~-~~~~~~i~~----------------  129 (284)
T 2a19_B           87 SSRSKTKCLFIQMEFCDKGTLEQ--------------WIEKRRGEK------LD-KVLALELFE----------------  129 (284)
T ss_dssp             --CCEEEEEEEEECCCCSCBHHH--------------HHHHGGGSC------CC-HHHHHHHHH----------------
T ss_pred             ccccCcceEEEEEeccCCCCHHH--------------HHhhccCCC------CC-HHHHHHHHH----------------
Confidence                 1   16788888755431              111111100      01 111112221                


Q ss_pred             hhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       179 ~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       .+...+..|.+        ..++|+|++|+||+++++ +.+.|+||+.+.
T Consensus       130 -qi~~~l~~lH~--------~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  170 (284)
T 2a19_B          130 -QITKGVDYIHS--------KKLINRDLKPSNIFLVDT-KQVKIGDFGLVT  170 (284)
T ss_dssp             -HHHHHHHHHHH--------TTEECSCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             -HHHHHHHHHHh--------CCeeeccCCHHHEEEcCC-CCEEECcchhhe
Confidence             12233334432        149999999999999974 689999999764

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=98.09  E-value=2e-05  Score=68.45  Aligned_cols=143  Identities=14%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECCe----e
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----R  109 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~  109 (267)
                      .++ ...|..|....||++..... +..+..+.+|+....... . ..-.+|+.+++.+...+ .+++++.+.++    +
T Consensus        50 ~y~i~~~lG~G~~g~V~~~~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           50 RIHIEKIIGSGDSGEVCYGRLRVP-GQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPN-IIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECCT-TSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECGGGCCEE
T ss_pred             HeEEeeEEEeCCCcEEEEEEEecC-CCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCccEE
Confidence            344 45567788899999986431 112345889987654211 1 11136777777774333 35567766532    8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       .       +   +....  .  .. ...+..+..+                 +...+..|-
T Consensus       128 v~e~~~~~~L~~-------~-------l---~~~~~--~--~~-~~~~~~i~~q-----------------i~~~L~~LH  168 (325)
T 3kul_A          128 VTEYMENGSLDT-------F-------L---RTHDG--Q--FT-IMQLVGMLRG-----------------VGAGMRYLS  168 (325)
T ss_dssp             EEECCTTCBHHH-------H-------H---HTTTT--C--SC-HHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EeeCCCCCcHHH-------H-------H---Hhccc--C--CC-HHHHHHHHHH-----------------HHHHHHHHH
Confidence            999999876532       1       1   11100  0  11 1122222221                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||+.+.
T Consensus       169 ~--------~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~a~  199 (325)
T 3kul_A          169 D--------LGYVHRDLAARNVLVDSN-LVCKVSDFGLSR  199 (325)
T ss_dssp             H--------TTEECSCCSGGGEEECTT-CCEEECCCSSCE
T ss_pred             H--------CCeeCCCCCcceEEECCC-CCEEECCCCccc
Confidence            2        139999999999999874 689999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=98.09  E-value=2.1e-06  Score=75.83  Aligned_cols=139  Identities=16%  Similarity=0.091  Sum_probs=82.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....    ........|..++..+..+...++++..+.+.    +|
T Consensus        24 ~~~~lG~G~fg~V~~~~~~~----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   99 (353)
T 2i0e_A           24 FLMVLGKGSFGKVMLSERKG----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   99 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETT----EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEE
Confidence            45667778889999998643    25678999875321    00111135666665555555556677765432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-..  .      . ......+..+                 +...++.|-+
T Consensus       100 ~E~~~gg~L~~--------------~l~~~~~--~------~-~~~~~~~~~q-----------------i~~aL~~LH~  139 (353)
T 2i0e_A          100 MEYVNGGDLMY--------------HIQQVGR--F------K-EPHAVFYAAE-----------------IAIGLFFLQS  139 (353)
T ss_dssp             EECCCSCBHHH--------------HHHHHSS--C------C-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHhcCC--C------C-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865531              1111110  0      0 1122222221                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||+.|..
T Consensus       140 --------~givHrDlkp~NIll~~~-g~vkL~DFG~a~~  170 (353)
T 2i0e_A          140 --------KGIIYRDLKLDNVMLDSE-GHIKIADFGMCKE  170 (353)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCCTTCBC
T ss_pred             --------CCEEeccCCHHHEEEcCC-CcEEEEeCCcccc
Confidence                    248999999999999874 6899999997753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=98.09  E-value=9.5e-06  Score=71.48  Aligned_cols=144  Identities=10%  Similarity=0.046  Sum_probs=78.6

Q ss_pred             EEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCC--CCceEEEEEC--Ce--eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQG--QGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~g--l~P~v~~~~~--~~--~v~e  112 (267)
                      ...|..|....||++..... ....+..+.+|+.......  +...|.++++.+....  ...+++....  +.  +|+|
T Consensus        70 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e  147 (365)
T 3e7e_A           70 HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPW--EFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGE  147 (365)
T ss_dssp             EEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHH--HHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEEC
T ss_pred             EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChh--HHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEe
Confidence            34567788899999942110 0113578999987654322  2236777777776422  1234455432  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..           +   +.+......  .. .. ......+..                 .+...++.|-+  
T Consensus       148 ~~~~g~L~~-----------~---l~~~~~~~~--~~-l~-~~~~~~i~~-----------------qi~~~L~~lH~--  190 (365)
T 3e7e_A          148 LYSYGTLLN-----------A---INLYKNTPE--KV-MP-QGLVISFAM-----------------RMLYMIEQVHD--  190 (365)
T ss_dssp             CCCSCBHHH-----------H---HHHHHTSTT--CS-CC-HHHHHHHHH-----------------HHHHHHHHHHT--
T ss_pred             ccCCCcHHH-----------H---HHHhhcccc--cC-CC-HHHHHHHHH-----------------HHHHHHHHHhh--
Confidence            999866532           1   111111100  00 01 111222222                 12233334432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC----------CCCEEEEeeccc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE----------TSSITIIVSFTF  228 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~----------~~~v~lIDwE~a  228 (267)
                            ..++|+|++|.|||++.+          .+.+.|+||..|
T Consensus       191 ------~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a  230 (365)
T 3e7e_A          191 ------CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS  230 (365)
T ss_dssp             ------TTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTC
T ss_pred             ------CCeecCCCCHHHEEecccccCccccccccCCEEEeeCchh
Confidence                  239999999999999761          267999999988

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=98.08  E-value=6.9e-06  Score=70.42  Aligned_cols=151  Identities=19%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~---~v  110 (267)
                      -...|..|....||++..... ....+..+.+|+.......  .....+|+.+++.+..+.-.+++++...  ++   ++
T Consensus        31 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv  110 (316)
T 2xir_A           31 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  110 (316)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             eeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEE
Confidence            356677788899999974210 0113578899987654321  1112478888888866544556676643  22   78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-------CCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-------RKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      +||++|.++..              .+.+-.....+..       ...-....+..+..                 .+..
T Consensus       111 ~e~~~~~~L~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------qi~~  159 (316)
T 2xir_A          111 VEFCKFGNLST--------------YLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSF-----------------QVAK  159 (316)
T ss_dssp             EECCTTEEHHH--------------HHHTCTTSEECC-------CTTCEEHHHHHHHHH-----------------HHHH
T ss_pred             EEcCCCCcHHH--------------HHHhcccccccccccchhhhccccCHHHHHHHHH-----------------HHHH
Confidence            99999866532              1111111000000       00000111111111                 1222


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..+-+        ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       160 al~~lH~--------~~i~H~dikp~Nil~~~~-~~~kl~Dfg~~~  196 (316)
T 2xir_A          160 GMEFLAS--------RKCIHRDLAARNILLSEK-NVVKICDFGLAR  196 (316)
T ss_dssp             HHHHHHH--------TTCCCSCCSGGGEEECGG-GCEEECCCGGGS
T ss_pred             HHHHHHh--------CCcccccCccceEEECCC-CCEEECCCcccc
Confidence            3333332        248999999999999864 689999999874

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.07  E-value=1.9e-05  Score=73.76  Aligned_cols=126  Identities=14%  Similarity=0.090  Sum_probs=76.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc------C-hHHHHHHHHHHHhCCCC-ceEEEEECCe-
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF------N-RDDEIRTFECMSSQGQG-PRLLGRFGDG-  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~------d-r~~E~~~~~~l~~~gl~-P~v~~~~~~~-  108 (267)
                      -..|..|-...||++...      +..+++|.......  ...      . -.+|+++++.+...++. |..+....+. 
T Consensus       341 ~~~LG~G~fg~Vy~~~~~------~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~  414 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSYL------DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNK  414 (540)
T ss_dssp             -------CCEEEEEEECS------SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTT
T ss_pred             CCEEeeCCCEEEEEEEEC------CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCcc
Confidence            346788888999999642      36777776433210  001      1 14799999999877764 7888877543 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++...-       ..                 ..       .+..                 .+...++.
T Consensus       415 ~lVmE~~~ggsL~~~l-------~~-----------------~~-------~i~~-----------------qi~~aL~~  446 (540)
T 3en9_A          415 RIMMSYINGKLAKDVI-------ED-----------------NL-------DIAY-----------------KIGEIVGK  446 (540)
T ss_dssp             EEEEECCCSEEHHHHS-------TT-----------------CT-------HHHH-----------------HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHH-------HH-----------------HH-------HHHH-----------------HHHHHHHH
Confidence             999999987654210       00                 00       1111                 12223334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +-+        ..++|+|++|.|||+++   .+.|+||..|..
T Consensus       447 LH~--------~gIiHrDiKp~NILl~~---~~kL~DFGla~~  478 (540)
T 3en9_A          447 LHK--------NDVIHNDLTTSNFIFDK---DLYIIDFGLGKI  478 (540)
T ss_dssp             HHH--------TTEECTTCCTTSEEESS---SEEECCCTTCEE
T ss_pred             HHH--------CcCccCCCCHHHEEECC---eEEEEECccCEE
Confidence            432        13999999999999984   799999999976

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=98.07  E-value=8.4e-06  Score=69.35  Aligned_cols=137  Identities=11%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      -+..|..|....||++....    .+..+.+|+.......  . ....+|+.+++.+...++ .+++..+.  +.  +|+
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~   80 (292)
T 3o0g_A            6 KLEKIGEGTYGTVFKAKNRE----THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI-VRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTB-CCEEEEEEETTEEEEEE
T ss_pred             eeeEecCCCCeEEEEEEECC----CCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCE-eeEEeEEEeCCEEEEEE
Confidence            45677888889999998643    3578889987543211  1 111367777776654333 44555543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+.           .+       .....+    .+ ......+..                 .+...+..|-+.
T Consensus        81 e~~~~~l~~-----------~~-------~~~~~~----l~-~~~~~~~~~-----------------ql~~~l~~lH~~  120 (292)
T 3o0g_A           81 EFCDQDLKK-----------YF-------DSCNGD----LD-PEIVKSFLF-----------------QLLKGLGFCHSR  120 (292)
T ss_dssp             ECCSEEHHH-----------HH-------HHTTTC----CC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             ecCCCCHHH-----------HH-------HhCCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHhC
Confidence            998862111           00       000000    01 112222222                 222333444321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       121 --------~ivH~dikp~Nil~~~~-~~~kl~Dfg~~~  149 (292)
T 3o0g_A          121 --------NVLHRDLKPQNLLINRN-GELKLANFGLAR  149 (292)
T ss_dssp             --------TEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------CeecCCCCHHHEEEcCC-CCEEEeecccce
Confidence                    49999999999999874 689999999874

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=98.07  E-value=6.4e-06  Score=69.72  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      ..++ ...|..|....||++....    .+..+.+|+............+|+.+++.+...++ +++++...+    .+|
T Consensus        13 ~~~~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~~~v   87 (288)
T 3kfa_A           13 TDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-VQLLGVCTREPPFYII   87 (288)
T ss_dssp             GGEEEEEESGGGTTCSEEEEEEGG----GTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSSEEEE
T ss_pred             cceeEEeecCCCCceeEEEeEecC----CCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCE-eeEEEEEccCCCEEEE
Confidence            3344 5566888889999998653    25788999876543222222478888888864443 456666543    288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..              .+.+...     .. .. ...+..+..                 .+...+..|.+
T Consensus        88 ~e~~~~~~L~~--------------~~~~~~~-----~~-~~-~~~~~~i~~-----------------~i~~~l~~lH~  129 (288)
T 3kfa_A           88 TEFMTYGNLLD--------------YLRECNR-----QE-VS-AVVLLYMAT-----------------QISSAMEYLEK  129 (288)
T ss_dssp             EECCTTEEHHH--------------HHHHCCT-----TT-SC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EEcCCCCcHHH--------------HHHhccc-----CC-cc-HhHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865531              1111100     00 01 111222221                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       130 ~--------~i~H~dikp~Nil~~~~-~~~~l~Dfg~~~  159 (288)
T 3kfa_A          130 K--------NFIHRDLAARNCLVGEN-HLVKVADFGLSR  159 (288)
T ss_dssp             H--------TCCCSCCSGGGEEECGG-GCEEECCCCGGG
T ss_pred             C--------CccCCCCCcceEEEcCC-CCEEEccCccce
Confidence            2        38999999999999874 689999999774

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=98.06  E-value=1.9e-06  Score=74.67  Aligned_cols=144  Identities=13%  Similarity=0.095  Sum_probs=78.9

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce-
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG-  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~-  108 (267)
                      +..+ ++.|..|....||++..... ...+..|.+|+.....   .......+|+++++.+.. --..+++..+.  +. 
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISG-SDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNH-PFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSS-TTTTCEEEEEEEESEEEEEEECC------CCCCCCCC-TTEECEEEEEEETTEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccC-CCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCC-CCCCeEEEEEEECCEE
Confidence            4455 55668888899999974211 1134678888765432   111112357776665532 12234555543  22 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|..+..       ..       .+-.  ..     +  ......|..+                 +...++.
T Consensus       102 ~ivmEy~~gg~L~~-------~l-------~~~~--~l-----~--e~~~~~~~~q-----------------i~~aL~y  141 (304)
T 3ubd_A          102 YLILDFLRGGDLFT-------RL-------SKEV--MF-----T--EEDVKFYLAE-----------------LALALDH  141 (304)
T ss_dssp             EEEECCCTTCEEHH-------HH-------HHHC--CC-----C--HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEcCCCCCHHH-------HH-------HhcC--CC-----C--HHHHHHHHHH-----------------HHHHHHH
Confidence             8999999976632       11       1100  00     0  1123333322                 2233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +-+        ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       142 lH~--------~~IiHRDlKp~NILl~~~-g~vKl~DFGla~~  175 (304)
T 3ubd_A          142 LHS--------LGIIYRDLKPENILLDEE-GHIKLTDFGLSKE  175 (304)
T ss_dssp             HHH--------TTCCCSSCCGGGEEECTT-SCEEEESSEEEEC
T ss_pred             HHH--------CCCcCCCCCHHHeEEcCC-CCEEeccccccee
Confidence            432        248999999999999974 6899999998853

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.06  E-value=5e-06  Score=73.20  Aligned_cols=141  Identities=11%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~  109 (267)
                      -...|..|....||++..... ...+..+.+|+.....     .......+|.++++.+..+...++++..+.  +.  +
T Consensus        58 ~~~~lG~G~~g~Vy~~~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l  136 (355)
T 1vzo_A           58 LLKVLGTGAYGKVFLVRKISG-HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHL  136 (355)
T ss_dssp             EEEEEEETTTEEEEEEEECSS-TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEE
T ss_pred             EEEEeccCCCEEEEEEEEccc-CCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEE
Confidence            355667787899999986321 1135788899875321     011111379999999987665566666543  22  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       ..       .+-.  .      .. ...+..+..                 .+...+..|-
T Consensus       137 v~e~~~~~~L~~-------~l-------~~~~--~------~~-~~~~~~~~~-----------------qi~~aL~~LH  176 (355)
T 1vzo_A          137 ILDYINGGELFT-------HL-------SQRE--R------FT-EHEVQIYVG-----------------EIVLALEHLH  176 (355)
T ss_dssp             EECCCCSCBHHH-------HH-------HHHS--C------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeecCCCCCHHH-------HH-------HHcC--C------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999865531       11       1000  0      01 111222222                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.        .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       177 ~~--------~ivH~Dlkp~NIll~~~-~~~kl~DfG~a~  207 (355)
T 1vzo_A          177 KL--------GIIYRDIKLENILLDSN-GHVVLTDFGLSK  207 (355)
T ss_dssp             HT--------TCCCCCCCGGGEEECTT-SCEEESCSSEEE
T ss_pred             HC--------CcccCCCCHHHEEECCC-CcEEEeeCCCCe
Confidence            21        38999999999999874 689999998764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=98.06  E-value=9.8e-06  Score=69.65  Aligned_cols=141  Identities=13%  Similarity=0.045  Sum_probs=78.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEE----CC----ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRF----GD----GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~----~~----~~  109 (267)
                      -+..|..|....||++....    .+..+++|+....... .....+|+.+++.+...++. ++++..    ..    .+
T Consensus        33 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           33 FIQKLGEGGFSYVDLVEGLH----DGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL-RLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             EEEEEEC--CEEEEEEEETT----TCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBC-CCCEEEEEEETTEEEEEE
T ss_pred             EEEEecCCCCeEEEEEEecC----CCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCee-eEEEEEEeccCCCceeEE
Confidence            45666788889999998543    3578999976433211 11124678887777544433 333332    11    17


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|++|.++..              .+.+......+    .. ...+..+..                 .+...+..|-
T Consensus       108 v~e~~~~~~L~~--------------~l~~~~~~~~~----~~-~~~~~~i~~-----------------qi~~~L~~LH  151 (317)
T 2buj_A          108 LLPFFKRGTLWN--------------EIERLKDKGNF----LT-EDQILWLLL-----------------GICRGLEAIH  151 (317)
T ss_dssp             EEECCTTCBHHH--------------HHHHHHTTTCC----CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEEeCCCCcHHH--------------HHHHHHhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999866532              11111111110    11 112222222                 2223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.        .++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       152 ~~--------~ivH~dlkp~NIl~~~~-~~~kl~dfg~~~  182 (317)
T 2buj_A          152 AK--------GYAHRDLKPTNILLGDE-GQPVLMDLGSMN  182 (317)
T ss_dssp             HT--------TEECCCCCGGGEEECTT-SCEEECCCSSCE
T ss_pred             hC--------CcccCCCCHHHEEEcCC-CCEEEEecCcch
Confidence            21        49999999999999874 689999999654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=98.06  E-value=1.5e-05  Score=70.82  Aligned_cols=138  Identities=15%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i  114 (267)
                      ...|..|....||++....    .+..+++|+....... .....+|+.+++.+..-+ .+++++.+.+  .  +|+||+
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~----~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~lv~E~~  168 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETA----TGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHAN-LIQLYDAFESKNDIVLVMEYV  168 (373)
T ss_dssp             EEECC-----CEEEEEETT----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEEEECC
T ss_pred             ceEEecCcCEEEEEEEEcC----CCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEeCC
Confidence            3457888889999997543    3578999987553211 111246788777774333 3556666542  2  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       .   +.    + +...      .. ......+..                 .+...+..|-+    
T Consensus       169 ~~~~L~~-------~---l~----~-~~~~------l~-~~~~~~i~~-----------------qi~~aL~~LH~----  205 (373)
T 2x4f_A          169 DGGELFD-------R---II----D-ESYN------LT-ELDTILFMK-----------------QICEGIRHMHQ----  205 (373)
T ss_dssp             TTCEEHH-------H---HH----H-TGGG------CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCcHHH-------H---HH----h-cCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH----
Confidence            9866531       0   10    0 0000      01 011111211                 22233344432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeC-CCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDE-ETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~-~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|+|||+.+ +++.+.|+||+.+.
T Consensus       206 ----~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~  237 (373)
T 2x4f_A          206 ----MYILHLDLKPENILCVNRDAKQIKIIDFGLAR  237 (373)
T ss_dssp             ----TTEECCCCCGGGEEEEETTTTEEEECCCSSCE
T ss_pred             ----CCcccccCCHHHEEEecCCCCcEEEEeCCCce
Confidence                13999999999999853 23579999999874

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=98.06  E-value=7.9e-06  Score=70.77  Aligned_cols=141  Identities=14%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC--------eeE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--------GRV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--------~~v  110 (267)
                      -...|..|....||++...      +..+.+|+...........+.|+.+++.+..-. ..++++.+.+        .+|
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           28 LLEVKARGRFGCVWKAQLL------NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHEN-ILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             EEEEEECSTTCEEEEEEET------TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT-BCCEEEEEEEECSSSEEEEEE
T ss_pred             hhheecccCceEEEEEEEC------CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCC-chhhcceeccCCCCCceEEEE
Confidence            3555677878999999753      478999987543322222234555554443222 2445554321        278


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ...          ...      .. ......+..                 .+...+..|-+
T Consensus       101 ~e~~~~g~L~~-------~l~----------~~~------~~-~~~~~~i~~-----------------qi~~al~~LH~  139 (322)
T 3soc_A          101 TAFHEKGSLSD-------FLK----------ANV------VS-WNELCHIAE-----------------TMARGLAYLHE  139 (322)
T ss_dssp             EECCTTCBHHH-------HHH----------HCC------BC-HHHHHHHHH-----------------HHHHHHHHHTC
T ss_pred             EecCCCCCHHH-------HHH----------hcC------CC-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            99999876532       110          000      01 111111211                 12222233321


Q ss_pred             hCCC--CCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPN--DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~--~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      .+..  ......++|+|++|.|||++.+ +.+.|+||..|
T Consensus       140 ~~~~l~~~~~~~ivH~Dlkp~Nill~~~-~~~kL~DFg~a  178 (322)
T 3soc_A          140 DIPGLKDGHKPAISHRDIKSKNVLLKNN-LTACIADFGLA  178 (322)
T ss_dssp             CEEEETTEEECEEECSCCSGGGEEECTT-CCEEECCCTTC
T ss_pred             hccccccccCCCEEeCCCChHhEEECCC-CeEEEccCCcc
Confidence            1100  1223489999999999999874 68999999987

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.06  E-value=7.2e-06  Score=69.75  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             cEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--cc-ChHHHHHHHHHHHhCCCCceEEEEECC---eeE
Q 024452           37 ALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FF-NRDDEIRTFECMSSQGQGPRLLGRFGD---GRV  110 (267)
Q Consensus        37 ~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v  110 (267)
                      -.-...|..|....||++..       ...+.+|+.......  .. ...+|+.+++.+...++. ++++...+   .+|
T Consensus        26 y~~~~~lG~G~~g~Vy~~~~-------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~lv   97 (289)
T 3og7_A           26 ITVGQRIGSGSFGTVYKGKW-------HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL-LFMGYSTAPQLAIV   97 (289)
T ss_dssp             CEEEEEEEECSSEEEEEEES-------SSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBC-CEEEEECSSSCEEE
T ss_pred             eeeeeEecCCCCeEEEEEEE-------cCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEE-EEEeeccCCccEEE
Confidence            34467778888899999973       356888887543211  11 113677777666544433 45555543   288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++...                 ++....    ... ...+..+..                 .+...+..|-+
T Consensus        98 ~e~~~~~~L~~~-----------------l~~~~~----~~~-~~~~~~i~~-----------------qi~~~L~~lH~  138 (289)
T 3og7_A           98 TQWCEGSSLYHH-----------------LHASET----KFE-MKKLIDIAR-----------------QTARGMDYLHA  138 (289)
T ss_dssp             EECCCEEEHHHH-----------------HTTC-------CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EEecCCCcHHHH-----------------HhhccC----CCC-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            999988654210                 011100    011 111222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.||+++++ +.+.|+||..+.
T Consensus       139 ~--------~i~H~Dlkp~Nil~~~~-~~~kl~Dfg~~~  168 (289)
T 3og7_A          139 K--------SIIHRDLKSNNIFLHED-NTVKIGDFGLAT  168 (289)
T ss_dssp             T--------TCCCSCCCGGGEEEETT-TEEEECCCC---
T ss_pred             C--------CcccccCccceEEECCC-CCEEEccceecc
Confidence            1        38999999999999974 689999998764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=98.06  E-value=1e-05  Score=69.79  Aligned_cols=136  Identities=14%  Similarity=0.107  Sum_probs=78.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      .+..|..|....||++...     ++..+++|+.......  . ....+|+.+++.+..-+ ..+++....+.    +|+
T Consensus        25 ~~~~lG~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           25 KLEKVGEGTYGVVYKAKDS-----QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN-IVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             EEEEEEECSSCEEEEEEET-----TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTT-BCCEEEEECCSSCEEEEE
T ss_pred             hhhhccCCCCeEEEEEEEC-----CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCC-EeeeeeEEccCCEEEEEE
Confidence            4677788888999999853     2578889987543211  1 11247888888885333 34566665432    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|. +.              ..+.   ....  .  .. ...+..+..                 .+...+..|-+ 
T Consensus        99 e~~~~~-l~--------------~~~~---~~~~--~--~~-~~~~~~~~~-----------------qi~~~l~~LH~-  137 (311)
T 3niz_A           99 EFMEKD-LK--------------KVLD---ENKT--G--LQ-DSQIKIYLY-----------------QLLRGVAHCHQ-  137 (311)
T ss_dssp             ECCSEE-HH--------------HHHH---TCTT--C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             cCCCCC-HH--------------HHHH---hccC--C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            999862 11              0011   1000  0  01 112222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       138 -------~~ivH~Dikp~NIl~~~~-~~~kl~Dfg~a~  167 (311)
T 3niz_A          138 -------HRILHRDLKPQNLLINSD-GALKLADFGLAR  167 (311)
T ss_dssp             -------TTEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             -------CCcccCCCchHhEEECCC-CCEEEccCcCce
Confidence                   249999999999999874 689999999774

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=98.05  E-value=1.8e-05  Score=66.34  Aligned_cols=137  Identities=17%  Similarity=0.093  Sum_probs=80.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      -+..|..|....||++....    ++..+++|+...... . .....+|+.+++.+..-+ .+++++...  +.  +++|
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A           11 LVQTLGEGAYGEVQLAVNRV----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEEE
T ss_pred             EEEEeecCCCcEEEEEEECC----CCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCC-ceeeeeEEEcCCEEEEEEE
Confidence            35667778888999997643    357899998743221 1 111246777777664333 345666543  22  8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++...-                 +.    ... .+ ...+..+..                 .+...+..|.+  
T Consensus        86 ~~~~~~L~~~l-----------------~~----~~~-~~-~~~~~~~~~-----------------~i~~~l~~lH~--  123 (276)
T 2yex_A           86 YCSGGELFDRI-----------------EP----DIG-MP-EPDAQRFFH-----------------QLMAGVVYLHG--  123 (276)
T ss_dssp             CCTTEEGGGGS-----------------BT----TTB-CC-HHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             ecCCCcHHHHH-----------------hh----ccC-CC-HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            99987664311                 00    000 01 111222222                 12223334432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       124 ------~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~~  153 (276)
T 2yex_A          124 ------IGITHRDIKPENLLLDER-DNLKISDFGLAT  153 (276)
T ss_dssp             ------TTEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ------CCeeccCCChHHEEEccC-CCEEEeeCCCcc
Confidence                  249999999999999874 689999999774

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.05  E-value=1.2e-05  Score=69.29  Aligned_cols=142  Identities=13%  Similarity=0.053  Sum_probs=79.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEE--------CC---
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRF--------GD---  107 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~--------~~---  107 (267)
                      ...|..|....||++....    .+..+++|+........ ....+|+.+++.+..+.-..+++...        .+   
T Consensus        33 ~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~  108 (337)
T 3ll6_A           33 RRVLAEGGFAFVYEAQDVG----SGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAE  108 (337)
T ss_dssp             EEEEECCSSEEEEEEEETT----TCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEE
T ss_pred             EEEEccCCceEEEEEEECC----CCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCce
Confidence            4556778889999998643    35789999764332111 11247888888887554445555554        11   


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .++++|++| ++.              ..+.+.....   .  .. ...+..+..                 .+...+.
T Consensus       109 ~~lv~e~~~g-~L~--------------~~l~~~~~~~---~--~~-~~~~~~i~~-----------------qi~~~l~  150 (337)
T 3ll6_A          109 FLLLTELCKG-QLV--------------EFLKKMESRG---P--LS-CDTVLKIFY-----------------QTCRAVQ  150 (337)
T ss_dssp             EEEEEECCSE-EHH--------------HHHHHHHTTC---S--CC-HHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEEecCC-CHH--------------HHHHHhhccC---C--CC-HHHHHHHHH-----------------HHHHHHH
Confidence             177888875 111              1111111100   0  01 111222221                 1222333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .|..      ....++|+|++|.|||++++ +.+.|+||..+..
T Consensus       151 ~LH~------~~~~ivH~Dikp~NIl~~~~-~~~kl~Dfg~~~~  187 (337)
T 3ll6_A          151 HMHR------QKPPIIHRDLKVENLLLSNQ-GTIKLCDFGSATT  187 (337)
T ss_dssp             HHHT------SSSCCBCCCCCGGGCEECTT-SCEEBCCCTTCBC
T ss_pred             HHHh------CCCCEEEccCCcccEEECCC-CCEEEecCcccee
Confidence            3332      11248999999999999974 6899999998753

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.04  E-value=1.5e-05  Score=69.11  Aligned_cols=160  Identities=13%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCC-cEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHH
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSD-ALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRT   88 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~-~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~   88 (267)
                      ..+.+++++.+...+..-..    .. .-....|..|....||++....    ++..+++|+.........+ ..+|+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lg~G~~g~V~~a~~~~----~g~~vavK~~~~~~~~~~~~~~~E~~~   95 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDP----RLLLDSYVKIGEGSTGIVCLAREKH----SGRQVAVKMMDLRKQQRRELLFNEVVI   95 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCH----HHHEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEETTTCCSHHHHHHHHHH
T ss_pred             cCcHHHHHHHHhhccCCCCc----hhhhhccEEeccCCCeEEEEEEECC----CCcEEEEEEEeccchhHHHHHHHHHHH
Confidence            34557777777766532110    01 1235678888889999998643    3578999987543322111 1367777


Q ss_pred             HHHHHhCCCCceEEEEE--CCe--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHH
Q 024452           89 FECMSSQGQGPRLLGRF--GDG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVA  164 (267)
Q Consensus        89 ~~~l~~~gl~P~v~~~~--~~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~  164 (267)
                      ++.+...++ .+++...  .+.  +|+||++|.++..       +       +   +...      .+ ...+..+..  
T Consensus        96 l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~~~L~~-------~-------l---~~~~------l~-~~~~~~i~~--  148 (321)
T 2c30_A           96 MRDYQHFNV-VEMYKSYLVGEELWVLMEFLQGGALTD-------I-------V---SQVR------LN-EEQIATVCE--  148 (321)
T ss_dssp             HTTCCCTTB-CCEEEEEEETTEEEEEECCCCSCBHHH-------H-------H---TTCC------CC-HHHHHHHHH--
T ss_pred             HHhCCCCCc-ceEEEEEEECCEEEEEEecCCCCCHHH-------H-------H---HhcC------CC-HHHHHHHHH--
Confidence            776654343 3444443  222  8899999876532       1       1   1111      01 112222222  


Q ss_pred             hhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          165 KSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                     .+...+..|-+        ..++|+|++|+||+++.+ +.+.|+||+.+.
T Consensus       149 ---------------qi~~~L~~LH~--------~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~~~  189 (321)
T 2c30_A          149 ---------------AVLQALAYLHA--------QGVIHRDIKSDSILLTLD-GRVKLSDFGFCA  189 (321)
T ss_dssp             ---------------HHHHHHHHHHH--------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ---------------HHHHHHHHHHH--------CCeecCCCCHHHEEECCC-CcEEEeeeeeee
Confidence                           12233344432        148999999999999874 689999999764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.04  E-value=5.1e-06  Score=71.80  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i  114 (267)
                      ..|..|....||++...     ++..+++|+.......  .....+|+.+++.+...++ +++++.+.+    .+|++|+
T Consensus        36 ~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~  109 (326)
T 3uim_A           36 NILGRGGFGKVYKGRLA-----DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL-LRLRGFCMTPTERLLVYPYM  109 (326)
T ss_dssp             TEEECCSSSEEEEECCS-----SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTB-CCCCEEECCSSCCEEEEECC
T ss_pred             eeEecCCCcEEEEEEec-----CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCc-cceEEEEecCCceEEEEEec
Confidence            45677878999999743     2578999987554211  1112467776666653333 445555432    2889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..              .+.   .......  +-.+.....+..                 .+...+..|-+.   
T Consensus       110 ~~~~L~~--------------~l~---~~~~~~~--~~~~~~~~~i~~-----------------~i~~~l~~lH~~---  150 (326)
T 3uim_A          110 ANGSVAS--------------CLR---ERPESQP--PLDWPKRQRIAL-----------------GSARGLAYLHDH---  150 (326)
T ss_dssp             TTCBHHH--------------HHH---CCSTTCC--CCCHHHHHHHHH-----------------HHHHHHHHHHHS---
T ss_pred             cCCCHHH--------------HHH---hccccCC--CCCHHHHHHHHH-----------------HHHHHHHHHHhC---
Confidence            9866532              111   1111000  111112222221                 122333444332   


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ....++|+|++|.|||++++ +.+.|+||..|.
T Consensus       151 --~~~~ivH~Dlkp~Nil~~~~-~~~kl~Dfg~~~  182 (326)
T 3uim_A          151 --CDPKIIHRDVKAANILLDEE-FEAVVGDFGLAK  182 (326)
T ss_dssp             --SSSCEECCCCSGGGEEECTT-CCEEECCCSSCE
T ss_pred             --CCCCeEeCCCchhhEEECCC-CCEEeccCcccc
Confidence              12369999999999999974 689999999874

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.04  E-value=7e-05  Score=64.07  Aligned_cols=140  Identities=13%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc------ccccChHHHHHHHHHHHh--CCCCceEEEEEC--C
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV------EVFFNRDDEIRTFECMSS--QGQGPRLLGRFG--D  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~------~~~~dr~~E~~~~~~l~~--~gl~P~v~~~~~--~  107 (267)
                      .-+..|..|....||++....    .+..+.+|+.....      .......+|.++++.+..  +--.++++..+.  .
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A           12 EPVAEIGVGAYGTVYKARDPH----SGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             EEEEEECCSSSCCEEEEECTT----TCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             EEEEEEecCCCeEEEEEEECC----CCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            346778888899999998532    35788888764211      111223578888888875  333455665432  1


Q ss_pred             -------eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhh
Q 024452          108 -------GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT  180 (267)
Q Consensus       108 -------~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
                             .++++|++| .+.              ..+.   ....  .. . ....+..+..+                 
T Consensus        88 ~~~~~~~~lv~e~~~~-~L~--------------~~~~---~~~~--~~-~-~~~~~~~i~~q-----------------  128 (308)
T 3g33_A           88 TDREIKVTLVFEHVDQ-DLR--------------TYLD---KAPP--PG-L-PAETIKDLMRQ-----------------  128 (308)
T ss_dssp             SSSEEEEEEEEECCCC-BHH--------------HHHH---TCCT--TC-S-CHHHHHHHHHH-----------------
T ss_pred             CCCceeEEEEehhhhc-CHH--------------HHHh---hccC--CC-C-CHHHHHHHHHH-----------------
Confidence                   167888876 221              1111   1110  00 0 11122222221                 


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +...+..|-+.        .++|+|++|.||+++.+ +.+.|+||..|.
T Consensus       129 i~~al~~lH~~--------~ivH~Dlkp~Nil~~~~-~~~kl~Dfg~a~  168 (308)
T 3g33_A          129 FLRGLDFLHAN--------CIVHRDLKPENILVTSG-GTVKLADFGLAR  168 (308)
T ss_dssp             HHHHHHHHHHT--------TCCCSCCCTTTEEECTT-SCEEECSCSCTT
T ss_pred             HHHHHHHHHHC--------CcccCCCCHHHEEEcCC-CCEEEeeCcccc
Confidence            22333444321        38999999999999874 689999999874

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.03  E-value=1.3e-05  Score=68.81  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC--eeEEEeecC
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--GRVEEFIHA  116 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~~v~e~i~G  116 (267)
                      -...|..|....||++...      +..+.+|....... .....+|+.+++.+..-++ .++++...+  .+|+||++|
T Consensus        12 ~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~-~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~lv~e~~~~   83 (307)
T 2eva_A           12 VEEVVGRGAFGVVCKAKWR------AKDVAIKQIESESE-RKAFIVELRQLSRVNHPNI-VKLYGACLNPVCLVMEYAEG   83 (307)
T ss_dssp             EEEEEECCSSSEEEEEEET------TEEEEEEECSSTTH-HHHHHHHHHHHHHCCCTTB-CCEEEBCTTTTEEEEECCTT
T ss_pred             eeeEeecCCCceEEEEEEC------CeeEEEEEecChhH-HHHHHHHHHHHhcCCCCCc-CeEEEEEcCCcEEEEEcCCC
Confidence            3456677888899999853      47889998754321 1111368888877743333 456665543  389999998


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..              .+   +.... .. ... ...+..|..                 .+.+.+..|-+     .
T Consensus        84 ~~L~~--------------~l---~~~~~-~~-~~~-~~~~~~~~~-----------------qi~~~l~~LH~-----~  121 (307)
T 2eva_A           84 GSLYN--------------VL---HGAEP-LP-YYT-AAHAMSWCL-----------------QCSQGVAYLHS-----M  121 (307)
T ss_dssp             CBHHH--------------HH---HCSSS-EE-CCC-HHHHHHHHH-----------------HHHHHHHHHHT-----C
T ss_pred             CCHHH--------------HH---hccCC-CC-ccC-HHHHHHHHH-----------------HHHHHHHHHHh-----C
Confidence            66532              11   11100 00 001 111222221                 12223334432     1


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..++|+|++|.||+++.++..+.|+||+.+.
T Consensus       122 ~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A          122 QPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             SSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             CCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            235689999999999998753337899999874

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.03  E-value=2.2e-05  Score=66.23  Aligned_cols=144  Identities=15%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECCe---e
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG---R  109 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~  109 (267)
                      +..+ ...|..|....||++...... +.+..+.+|+...... . .....+|+.+++.+..-+ .+++++...++   +
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~   89 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHK-GEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPH-IVKLIGIIEEEPTWI   89 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTT-CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTT-BCCEEEEECSSSCEE
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCC-CCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCC-cceEEEEEcCCCCEE
Confidence            3444 456677888999998754211 1234588998765421 1 111246888888885333 34566666433   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|++|.++..       ..       .+ +...      .. ...+..+..                 .+...+..|.
T Consensus        90 v~e~~~~~~L~~-------~l-------~~-~~~~------~~-~~~~~~~~~-----------------~i~~~l~~lH  130 (281)
T 3cc6_A           90 IMELYPYGELGH-------YL-------ER-NKNS------LK-VLTLVLYSL-----------------QICKAMAYLE  130 (281)
T ss_dssp             EEECCTTCBHHH-------HH-------HH-HTTT------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEecCCCCCHHH-------HH-------Hh-cccc------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999865531       11       11 0000      01 111222221                 1223333443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       131 ~--------~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  161 (281)
T 3cc6_A          131 S--------INCVHRDIAVRNILVASP-ECVKLGDFGLSR  161 (281)
T ss_dssp             H--------TTCCCCCCSGGGEEEEET-TEEEECCCCGGG
T ss_pred             H--------CCcccCCCccceEEECCC-CcEEeCccCCCc
Confidence            2        238999999999999874 679999999775

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.03  E-value=1.3e-05  Score=69.56  Aligned_cols=139  Identities=14%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      +.++ ...|..|.-..||+....       +.+.+|+.....  .... .-.+|+.+++.+..-.+. +++++..++   
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~-------~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV-~l~g~~~~~~~~  107 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWH-------GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL-LFMGYMTKDNLA  107 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESS-------SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBC-CEEEEECSSSCE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEEC-------CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEe-eEEEEEECCeEE
Confidence            3443 566788888999999753       457777754221  1111 114788888777544444 466665433   


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..                 .||....+    .. +.....+..                 .+...+.+|
T Consensus       108 iVmEy~~gGsL~~-----------------~l~~~~~~----l~-~~~~~~i~~-----------------qia~gL~yL  148 (307)
T 3omv_A          108 IVTQWCEGSSLYK-----------------HLHVQETK----FQ-MFQLIDIAR-----------------QTAQGMDYL  148 (307)
T ss_dssp             EEEECCSSCBHHH-----------------HHHTSCCC----CC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEEcCCCCCHHH-----------------HHhhcCCC----CC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            8999999876532                 12222111    11 111222222                 223333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -+        ..++|+|++|.|||++++ +.+.|.||..|..
T Consensus       149 H~--------~~IiHRDlKp~NILl~~~-~~~Ki~DFGla~~  181 (307)
T 3omv_A          149 HA--------KNIIHRDMKSNNIFLHEG-LTVKIGDFGLATV  181 (307)
T ss_dssp             HH--------TTCBCSCCCSSSEEEETT-EEEEECCCSSCBC
T ss_pred             HH--------CCccCCccCHHHEEECCC-CcEEEeeccCcee
Confidence            32        138999999999999974 6799999998853

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=98.03  E-value=4.9e-06  Score=74.42  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=80.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....    .......+|+.+++.+.. ...+++++.+.+  .  +|
T Consensus        19 i~~~LG~G~fG~V~~~~~~~----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~h-p~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           19 ILRAIGKGSFGKVCIVQKND----TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH-PFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             EEEEEECCTTCCEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCC-TTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCC-CCCCcEEEEEEeCCEEEEE
Confidence            45667888889999998653    35788999864321    111111367888777743 333455555532  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+..              .+.   . ..  .  .. ...+..|..+                 +...+..|-+
T Consensus        94 ~e~~~gg~L~~--------------~l~---~-~~--~--l~-~~~~~~~~~q-----------------i~~aL~~LH~  133 (384)
T 4fr4_A           94 VDLLLGGDLRY--------------HLQ---Q-NV--H--FK-EETVKLFICE-----------------LVMALDYLQN  133 (384)
T ss_dssp             ECCCTTEEHHH--------------HHH---T-TC--C--CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EecCCCCcHHH--------------HHH---h-cC--C--CC-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99998865531              111   1 00  0  01 1122223222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       134 --------~givHrDlkp~NIll~~~-g~vkL~DFG~a~  163 (384)
T 4fr4_A          134 --------QRIIHRDMKPDNILLDEH-GHVHITDFNIAA  163 (384)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------CCceeccCcHHHeEECCC-CCEEEeccceee
Confidence                    149999999999999874 689999999774

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=98.03  E-value=2.1e-05  Score=67.86  Aligned_cols=138  Identities=15%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---------ccccChHHHHHHHHHHHhCCCCceEEEEECC--
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---------EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---------~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--  107 (267)
                      -...|..|....||++....    .+..+++|+.....         .......+|+.+++.+..-++ .++++....  
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~   88 (322)
T 2ycf_A           14 MSKTLGSGACGEVKLAFERK----TCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI-IKIKNFFDAED   88 (322)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEECC---------------CHHHHHHHHHHCCCTTB-CCEEEEEESSS
T ss_pred             EeeEEecCCCEEEEEEEEcC----CCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCC-ceEeeEEcCCc
Confidence            35667778889999997643    35789999875431         011123578888888854343 445655432  


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .+|++|++|.++...              +   ...    .. .. ...+..+..                 .+...+.
T Consensus        89 ~~lv~e~~~~~~L~~~--------------~---~~~----~~-~~-~~~~~~~~~-----------------qi~~~l~  128 (322)
T 2ycf_A           89 YYIVLELMEGGELFDK--------------V---VGN----KR-LK-EATCKLYFY-----------------QMLLAVQ  128 (322)
T ss_dssp             EEEEEECCTTEETHHH--------------H---STT----CC-CC-HHHHHHHHH-----------------HHHHHHH
T ss_pred             eEEEEecCCCCcHHHH--------------H---hcc----CC-CC-HHHHHHHHH-----------------HHHHHHH
Confidence             288999998665320              0   000    00 11 111222222                 1223333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~  229 (267)
                      .|.+        ..++|+|++|.||+++.++.  .+.|+||+.+.
T Consensus       129 ~lH~--------~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A          129 YLHE--------NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             HHHH--------TTEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             HHHH--------CCeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            4432        13999999999999986422  38999999875

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=98.02  E-value=6.5e-06  Score=71.49  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    ++..+.+|+......    ......+|..+++.+.. ....++++.+.+.    +|
T Consensus        10 ~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-p~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A           10 ILRTLGTGSFGRVHLIRSRH----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH-PFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCB-TTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCC-CCCceEeEEEEeCCEEEEE
Confidence            45667788889999998643    357899998753210    01111356666665533 2335566665432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.+-.  ..     +  ......+..                 .+...++.|-+
T Consensus        85 ~e~~~gg~L~~--------------~l~~~~--~~-----~--~~~~~~~~~-----------------qi~~aL~~LH~  124 (318)
T 1fot_A           85 MDYIEGGELFS--------------LLRKSQ--RF-----P--NPVAKFYAA-----------------EVCLALEYLHS  124 (318)
T ss_dssp             ECCCCSCBHHH--------------HHHHTS--SC-----C--HHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EeCCCCCCHHH--------------HHHHcC--CC-----C--HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865531              111100  00     0  111222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       125 --------~~ivHrDlkp~NIll~~~-g~~kL~Dfg~a~  154 (318)
T 1fot_A          125 --------KDIIYRDLKPENILLDKN-GHIKITDFGFAK  154 (318)
T ss_dssp             --------TTEECCCCCGGGEEECTT-SCEEECCCSSCE
T ss_pred             --------CCccccCCChheEEEcCC-CCEEEeecCcce
Confidence                    249999999999999874 789999999774

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.02  E-value=7.6e-06  Score=69.61  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=80.5

Q ss_pred             CcEEEE--EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe--
Q 024452           36 DALQVI--PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG--  108 (267)
Q Consensus        36 ~~~~i~--~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~--  108 (267)
                      ....+.  .|..|....||++.....  ..+..+.+|+......  ... ...+|+.+++.+..-+ .+++++...+.  
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~   92 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMK--KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY-IVRMIGICEAESW   92 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECS--SSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTT-BCCEEEEEESSSE
T ss_pred             hhhhhccCccccccCeeeEeeeecCC--CceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEECCCCc
Confidence            345543  578888899999954211  1357888998764321  111 1246788887774333 34556655332  


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|++|++|.++..       ..       .+ +  . +    .. ...+..+..                 .+...+..
T Consensus        93 ~lv~e~~~~~~L~~-------~l-------~~-~--~-~----~~-~~~~~~i~~-----------------qi~~~l~~  132 (291)
T 1xbb_A           93 MLVMEMAELGPLNK-------YL-------QQ-N--R-H----VK-DKNIIELVH-----------------QVSMGMKY  132 (291)
T ss_dssp             EEEEECCTTEEHHH-------HH-------HH-C--T-T----CC-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEEeCCCCCHHH-------HH-------Hh-C--c-C----CC-HHHHHHHHH-----------------HHHHHHHH
Confidence             8899998866532       11       11 0  0 0    01 111222222                 22233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |-+.        .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       133 LH~~--------~i~H~dikp~Nil~~~~-~~~kl~Dfg~~~  165 (291)
T 1xbb_A          133 LEES--------NFVHRDLAARNVLLVTQ-HYAKISDFGLSK  165 (291)
T ss_dssp             HHHT--------TEECSCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             HHhC--------CeEcCCCCcceEEEeCC-CcEEEccCCcce
Confidence            4321        49999999999999874 679999998764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.02  E-value=1.1e-05  Score=68.52  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=79.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH-hCCCCceEEEEE----CCe----
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS-SQGQGPRLLGRF----GDG----  108 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~-~~gl~P~v~~~~----~~~----  108 (267)
                      .-...|..|....||++...      +..+.+|+.......  ....|.+++.... ++.-..++++..    ..+    
T Consensus        11 ~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~~--~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A           11 TLLECVGKGRYGEVWRGSWQ------GENVAVKIFSSRDEK--SWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             EEEEEEEECSSEEEEEEEET------TEEEEEEEECGGGHH--HHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             EEEEeeccCCCcEEEEEEEC------CEEEEEEEeccccch--hhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            34667788888999999752      478999987543221  1125666665532 222223444432    222    


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +++||++|.++..              .+   +...      .. ......+..                 .+...+..|
T Consensus        83 lv~e~~~~g~L~~--------------~l---~~~~------~~-~~~~~~i~~-----------------~i~~~l~~l  121 (301)
T 3q4u_A           83 LITHYHEMGSLYD--------------YL---QLTT------LD-TVSCLRIVL-----------------SIASGLAHL  121 (301)
T ss_dssp             EEECCCTTCBHHH--------------HH---TTCC------BC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EehhhccCCCHHH--------------HH---hhcc------cC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            7899998865532              01   1100      11 111111211                 122333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      -...........++|+|++|.|||++.+ +.+.|+||..|
T Consensus       122 H~~~~~~~~~~~ivH~Dlkp~Nill~~~-~~~kl~Dfg~a  160 (301)
T 3q4u_A          122 HIEIFGTQGKPAIAHRDLKSKNILVKKN-GQCCIADLGLA  160 (301)
T ss_dssp             HSCBCSTTCBCEEECSCCCGGGEEECTT-SCEEECCCTTC
T ss_pred             HHhhhhccCCCCeecCCCChHhEEEcCC-CCEEEeeCCCe
Confidence            3221122336789999999999999874 68999999976

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=98.02  E-value=9.9e-06  Score=70.86  Aligned_cols=81  Identities=20%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~---~v  110 (267)
                      -...|..|....||++..... ....+..+.+|+.......  .....+|+.+++.+..+.-..++++...  +.   ++
T Consensus        26 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv  105 (359)
T 3vhe_A           26 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  105 (359)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             eceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEE
Confidence            456677788899999974210 0113578899987654211  1112478889988876544456676653  22   78


Q ss_pred             EEeecCCCC
Q 024452          111 EEFIHARTL  119 (267)
Q Consensus       111 ~e~i~G~~l  119 (267)
                      +||++|.++
T Consensus       106 ~e~~~~g~L  114 (359)
T 3vhe_A          106 VEFCKFGNL  114 (359)
T ss_dssp             EECCTTEEH
T ss_pred             EEecCCCcH
Confidence            999998655

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=98.02  E-value=8.7e-06  Score=71.34  Aligned_cols=137  Identities=16%  Similarity=0.099  Sum_probs=79.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....    .......+|..+++.+. +...+++++.+.+  .  +|
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~-hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            9 YLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-HPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC-CTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECC----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCC-CCcCcceEEEEEeCCEEEEE
Confidence            45667788889999998643    35789999875321    11111135677766553 2233455655532  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-.  .      .. ......+..+                 +...++.|-+
T Consensus        84 ~E~~~gg~L~~--------------~l~~~~--~------~~-~~~~~~~~~q-----------------i~~aL~~LH~  123 (337)
T 1o6l_A           84 MEYANGGELFF--------------HLSRER--V------FT-EERARFYGAE-----------------IVSALEYLHS  123 (337)
T ss_dssp             EECCTTCBHHH--------------HHHHHS--C------CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHHhcC--C------CC-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999866531              011100  0      00 1122222221                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       124 --------~~ivHrDlkp~NIll~~~-g~vkL~DFG~a~  153 (337)
T 1o6l_A          124 --------RDVVYRDIKLENLMLDKD-GHIKITDFGLCK  153 (337)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCCTTCB
T ss_pred             --------CCeecCcCCHHHEEECCC-CCEEEeeccchh
Confidence                    138999999999999874 689999999875

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=98.02  E-value=1.1e-05  Score=72.18  Aligned_cols=139  Identities=16%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      -+..|..|....||++....    .+..+++|+....... .....+|+.+++.+..-+ ..+++..+.+.    +|+||
T Consensus        55 i~~~LG~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           55 ILEELGSGAFGVVHRCVEKA----TGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK-LINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT-BCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEecCCCEEEEEEEECC----CCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcC-CCeEEEEEEeCCEEEEEEEc
Confidence            45667788889999997643    3578889987543211 111246788777664333 34566655322    88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++...                 +.....    ... ...+..+..                 .+...+..|-+   
T Consensus       130 ~~gg~L~~~-----------------l~~~~~----~l~-~~~~~~i~~-----------------qi~~aL~~LH~---  167 (387)
T 1kob_A          130 LSGGELFDR-----------------IAAEDY----KMS-EAEVINYMR-----------------QACEGLKHMHE---  167 (387)
T ss_dssp             CCCCBHHHH-----------------TTCTTC----CBC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             CCCCcHHHH-----------------HHhhcC----CCC-HHHHHHHHH-----------------HHHHHHHHHHh---
Confidence            998655310                 111000    011 112222222                 12233344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.|||++.+ .+.+.|+||+.|.
T Consensus       168 -----~givHrDlkp~NIll~~~~~~~vkL~DFG~a~  199 (387)
T 1kob_A          168 -----HSIVHLDIKPENIMCETKKASSVKIIDFGLAT  199 (387)
T ss_dssp             -----TTEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred             -----CCeeecccchHHeEEecCCCCceEEEecccce
Confidence                 139999999999999742 3469999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.4e-05  Score=68.58  Aligned_cols=139  Identities=17%  Similarity=0.061  Sum_probs=79.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-------cccChHHHHHHHHHHHh---CCCCceEEEEECC-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-------VFFNRDDEIRTFECMSS---QGQGPRLLGRFGD-  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-------~~~dr~~E~~~~~~l~~---~gl~P~v~~~~~~-  107 (267)
                      -...|..|....||++....    ++..+++|+......       ......+|+.+++.+..   +.-.+++++.+.+ 
T Consensus        35 ~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~  110 (312)
T 2iwi_A           35 LGPLLGKGGFGTVFAGHRLT----DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQ  110 (312)
T ss_dssp             EEEEEEEETTEEEEEEECTT----TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC---
T ss_pred             EeeEEEcCCCEEEEEEEEcc----CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecC
Confidence            45667778788999997532    357899998754321       11122479999988863   3334556665432 


Q ss_pred             -e--eEEEe-ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          108 -G--RVEEF-IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       108 -~--~v~e~-i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                       .  +++++ ++|.++..              .+.+ +. .      .. ...+..+..                 .+..
T Consensus       111 ~~~~~v~e~~~~~~~L~~--------------~l~~-~~-~------~~-~~~~~~~~~-----------------qi~~  150 (312)
T 2iwi_A          111 EGFMLVLERPLPAQDLFD--------------YITE-KG-P------LG-EGPSRCFFG-----------------QVVA  150 (312)
T ss_dssp             --CEEEEECCSSEEEHHH--------------HHHH-HC-S------CC-HHHHHHHHH-----------------HHHH
T ss_pred             CeEEEEEEecCCCCCHHH--------------HHHh-cC-C------CC-HHHHHHHHH-----------------HHHH
Confidence             2  77887 56654421              1111 00 0      01 111222222                 1223


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..|.+.        .++|+|++|+||+++.+++.+.|+||+.+.
T Consensus       151 ~l~~lH~~--------~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~  188 (312)
T 2iwi_A          151 AIQHCHSR--------GVVHRDIKDENILIDLRRGCAKLIDFGSGA  188 (312)
T ss_dssp             HHHHHHHH--------TEECCCCSGGGEEEETTTTEEEECCCSSCE
T ss_pred             HHHHHHHC--------CeeecCCChhhEEEeCCCCeEEEEEcchhh
Confidence            33444332        399999999999998434679999999764

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=98.01  E-value=3.5e-05  Score=68.22  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=85.7

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe--
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG--  108 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~--  108 (267)
                      .++ ...|..|....||++......   ...+..+.+|+.......  .....+|+.+++.+.++.-.+++++.+.+.  
T Consensus        82 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~  161 (370)
T 2psq_A           82 KLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP  161 (370)
T ss_dssp             GEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSS
T ss_pred             HCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCC
Confidence            344 456788888999999753110   012356889987654211  111247888888886555556777776432  


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCC-------CCCCchhHHHHHHHHHHHhhccCcccccccchh
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-------GPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY  179 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  179 (267)
                        +|+||++|.++..              .+.+-......       .....-.+..+..+..                 
T Consensus       162 ~~lv~e~~~~g~L~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------------  210 (370)
T 2psq_A          162 LYVIVEYASKGNLRE--------------YLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY-----------------  210 (370)
T ss_dssp             CEEEEECCTTCBHHH--------------HHHHTCCC-----------CCCCCCHHHHHHHHH-----------------
T ss_pred             EEEEEEcCCCCCHHH--------------HHHhhCCccccccccccccccccCCHHHHHHHHH-----------------
Confidence              8999999876532              11110000000       0000001111111111                 


Q ss_pred             hHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       180 ~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+...++.|-+        ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       211 qi~~aL~~LH~--------~~ivHrDlkp~NIll~~~-~~~kl~DFG~a~  251 (370)
T 2psq_A          211 QLARGMEYLAS--------QKCIHRDLAARNVLVTEN-NVMKIADFGLAR  251 (370)
T ss_dssp             HHHHHHHHHHH--------TTEECSCCCGGGEEECTT-CCEEECCCSSCE
T ss_pred             HHHHHHHHHHh--------CCeeccccchhhEEECCC-CCEEEccccCCc
Confidence            22233334432        249999999999999874 689999999774

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=98.01  E-value=1.8e-05  Score=66.50  Aligned_cols=78  Identities=9%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..|..|....||++....    ++..+++|+......   ......+|...+..+..+.-.+++++...  +.  +|+
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~   90 (289)
T 1x8b_A           15 ELEKIGSGEFGSVFKCVKRL----DGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN   90 (289)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhhhcCCCceEEEEEEEcC----CCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            45677778889999998643    357899998754321   11112355666655544443455666543  22  889


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      ||++|.++.
T Consensus        91 e~~~~~~L~   99 (289)
T 1x8b_A           91 EYCNGGSLA   99 (289)
T ss_dssp             ECCTTCBHH
T ss_pred             EecCCCcHH
Confidence            999986664

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=98.01  E-value=1.9e-05  Score=68.60  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----ccC---hHHHHHHHHHHHhCCCCceEEEEECC--e-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----FFN---RDDEIRTFECMSSQGQGPRLLGRFGD--G-  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~~d---r~~E~~~~~~l~~~gl~P~v~~~~~~--~-  108 (267)
                      ....|..|....||++....    .+..+.+|+.......    ..+   ..+|+.+++.+..-+ .++++..+.+  . 
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           15 TGEELGSGQFAVVKKCREKS----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN-VITLHEVYENKTDV   89 (326)
T ss_dssp             EEEEEECCSSEEEEEEEETT----TCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             eceEEeeCCCeEEEEEEECC----CCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEE
Confidence            45667788889999998643    3578888876432210    011   247888888885433 3455665532  2 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++..              .+.   ..    .. .+ ......+..                 .+...+..
T Consensus        90 ~lv~e~~~~~~L~~--------------~l~---~~----~~-~~-~~~~~~i~~-----------------qi~~al~~  129 (326)
T 2y0a_A           90 ILILELVAGGELFD--------------FLA---EK----ES-LT-EEEATEFLK-----------------QILNGVYY  129 (326)
T ss_dssp             EEEEECCCSCBHHH--------------HHT---TS----SC-CB-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEEcCCCCCHHH--------------HHH---hc----CC-cC-HHHHHHHHH-----------------HHHHHHHH
Confidence             8899999865532              010   00    00 11 112222222                 12233334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|.||++++++.   .+.|+||+.|.
T Consensus       130 lH~--------~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A          130 LHS--------LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             HHH--------TTEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             HHH--------CCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence            432        23999999999999986421   68999999774

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=98.01  E-value=1.3e-05  Score=69.72  Aligned_cols=144  Identities=13%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---c---------------cChHHHHHHHHHHHhCCCCce
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---F---------------FNRDDEIRTFECMSSQGQGPR  100 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~---------------~dr~~E~~~~~~l~~~gl~P~  100 (267)
                      -...|..|....||++..      ++..+++|+.......   .               -...+|+.+++.+...++ ++
T Consensus        35 ~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~  107 (348)
T 2pml_X           35 IIRTLNQGKFNKIILCEK------DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC-LT  107 (348)
T ss_dssp             EEEEEECCSSCCEEEEEE------TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTB-CC
T ss_pred             EEEEEcCCCCeEEEEEEc------CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCc-ce
Confidence            456678888899999985      2578999987432100   0               112467888777753333 34


Q ss_pred             EEEEEC--Ce--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccccccc
Q 024452          101 LLGRFG--DG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEF  176 (267)
Q Consensus       101 v~~~~~--~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  176 (267)
                      +++...  +.  +|+||++|.++....- .             .......... +-....+..+..              
T Consensus       108 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~-------------~~~l~~~~~~-~~~~~~~~~i~~--------------  158 (348)
T 2pml_X          108 CEGIITNYDEVYIIYEYMENDSILKFDE-Y-------------FFVLDKNYTC-FIPIQVIKCIIK--------------  158 (348)
T ss_dssp             CSEEEESSSEEEEEEECCTTCBSSEESS-S-------------EESSCSSSCC-CCCHHHHHHHHH--------------
T ss_pred             EEEEEeeCCeEEEEEeccCCCcHHHHHH-H-------------hhhhhhcccc-CCCHHHHHHHHH--------------
Confidence            444432  22  8899999987764210 0             0000000000 111112222222              


Q ss_pred             chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          177 CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       177 ~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         .+...+..|.+       ...++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       159 ---qi~~~l~~lH~-------~~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~~  200 (348)
T 2pml_X          159 ---SVLNSFSYIHN-------EKNICHRDVKPSNILMDKN-GRVKLSDFGESE  200 (348)
T ss_dssp             ---HHHHHHHHHHH-------TSCEECCCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             ---HHHHHHHHHhc-------cCCEeecCCChHhEEEcCC-CcEEEecccccc
Confidence               12233334432       1359999999999999874 689999999875

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.01  E-value=7.7e-06  Score=70.66  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=83.1

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEECCe----
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----  108 (267)
                      +.+. .+.|..|.-..||+....... ..++..+.+|......... .+-.+|+++++.+.. --.-++++.+.+.    
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~H-pnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQH-EHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCC-TTBCCEEEEECSSSSEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCC-CCCccEEEEEeeCCEEE
Confidence            3444 456788888999999764211 1124567788765443221 112478888877743 2234567776432    


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..       ....-+..-...-. ..+ . ..-.+.....+..                 .+...+.+|
T Consensus        92 lV~Ey~~~G~L~~-------~l~~~~~~~~~~~~-~~~-~-~~l~~~~~~~i~~-----------------qia~gl~yL  144 (299)
T 4asz_A           92 MVFEYMKHGDLNK-------FLRAHGPDAVLMAE-GNP-P-TELTQSQMLHIAQ-----------------QIAAGMVYL  144 (299)
T ss_dssp             EEEECCTTCBHHH-------HHHHTSHHHHHC-----C-C-CCCCHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEEcCCCCcHHH-------HHHhcCcccccccc-cCC-C-CCCCHHHHHHHHH-----------------HHHHHHHHH
Confidence            8999999877642       11110000000000 000 0 0011122222222                 122333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+        ..++|+|++|.|||++++ +.+.|.||..|.
T Consensus       145 H~--------~~iiHRDlKp~NILl~~~-~~~Ki~DFGla~  176 (299)
T 4asz_A          145 AS--------QHFVHRDLATRNCLVGEN-LLVKIGDFGMSR  176 (299)
T ss_dssp             HH--------TTCCCSCCSGGGEEECGG-GCEEECCCSCHH
T ss_pred             Hh--------CCcccCccCHhhEEECCC-CcEEECCcccce
Confidence            32        238999999999999874 689999999874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.00  E-value=2.2e-05  Score=67.09  Aligned_cols=136  Identities=20%  Similarity=0.162  Sum_probs=79.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccC-hHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      ..|..|....||++...      +..+.+|+.....    ..... ..+|+.+++.+..-+ .+++++...+    .+++
T Consensus        37 ~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~  109 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYVN------NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN-LVELLGFSSDGDDLCLVY  109 (307)
T ss_dssp             CEEEECSSEEEEEEESS------SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEEE
T ss_pred             CccccCCCeEEEEEEEC------CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC-eEEEEEEEecCCceEEEE
Confidence            45777878999999742      4788888875432    11111 146888888775333 3556666542    2889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..              .+...... .+    .. ......+..                 .+...+..|.+ 
T Consensus       110 e~~~~~~L~~--------------~l~~~~~~-~~----~~-~~~~~~i~~-----------------~i~~~l~~lH~-  151 (307)
T 2nru_A          110 VYMPNGSLLD--------------RLSCLDGT-PP----LS-WHMRCKIAQ-----------------GAANGINFLHE-  151 (307)
T ss_dssp             ECCTTCBHHH--------------HHHTGGGC-CC----CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EecCCCcHHH--------------HHHhccCC-CC----CC-HHHHHHHHH-----------------HHHHHHHHHhc-
Confidence            9998865531              11111110 00    11 111222221                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||++++ ++.+.|+||+.+.
T Consensus       152 -------~~i~H~dlkp~Nili~~-~~~~kl~Dfg~~~  181 (307)
T 2nru_A          152 -------NHHIHRDIKSANILLDE-AFTAKISDFGLAR  181 (307)
T ss_dssp             -------TTEECSCCCGGGEEECT-TCCEEECCCTTCE
T ss_pred             -------CCeecCCCCHHHEEEcC-CCcEEEeeccccc
Confidence                   13999999999999987 4689999999763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.00  E-value=1.1e-05  Score=68.37  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      .|..|....||++......  .+..+.+|+.......  .....+|+.+++.+..-+ .+++++...+.   +|++|++|
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~lv~e~~~~   93 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY-IVRLIGVCQAEALMLVMEMAGG   93 (287)
T ss_dssp             EEECCTTEEEEEEEEC-----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEESSSEEEEEECCTT
T ss_pred             cccccCceeEEEeEeccCC--CcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCC-EeEEEEEecCCCcEEEEEeCCC
Confidence            6788888999998743211  2467889987654211  111247888888884333 34556655332   88999998


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++...              +.   ....  .  .+ ...+..+..                 .+...+..|.+.     
T Consensus        94 ~~L~~~--------------l~---~~~~--~--~~-~~~~~~~~~-----------------qi~~~l~~lH~~-----  129 (287)
T 1u59_A           94 GPLHKF--------------LV---GKRE--E--IP-VSNVAELLH-----------------QVSMGMKYLEEK-----  129 (287)
T ss_dssp             EEHHHH--------------HT---TCTT--T--SC-HHHHHHHHH-----------------HHHHHHHHHHHT-----
T ss_pred             CCHHHH--------------HH---hCCc--c--CC-HHHHHHHHH-----------------HHHHHHHHHHHC-----
Confidence            655320              10   0000  0  11 112222222                 122333444321     


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       130 ---~i~H~dlkp~Nili~~~-~~~kl~Dfg~~~  158 (287)
T 1u59_A          130 ---NFVHRDLAARNVLLVNR-HYAKISDFGLSK  158 (287)
T ss_dssp             ---TEECCCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             ---CEeeCCCchheEEEcCC-CCEEECccccee
Confidence               39999999999999874 679999998764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=97.99  E-value=1.9e-05  Score=68.56  Aligned_cols=82  Identities=16%  Similarity=0.082  Sum_probs=51.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      .-+..|..|....||++...... ...+..+.+|+....... .. ...+|+.+++.+. +.-.+++++.+.+    .+|
T Consensus        50 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv  128 (343)
T 1luf_A           50 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD-NPNIVKLLGVCAVGKPMCLL  128 (343)
T ss_dssp             EEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC-CTTBCCEEEEECSSSSCEEE
T ss_pred             eeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCC-CCCEEEEEEEEccCCceEEE
Confidence            44667788888999999864210 012467899997654321 11 1246888887774 3334556666543    289


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      +||++|.++.
T Consensus       129 ~e~~~~~~L~  138 (343)
T 1luf_A          129 FEYMAYGDLN  138 (343)
T ss_dssp             EECCTTCBHH
T ss_pred             EecCCCCcHH
Confidence            9999987664

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=97.99  E-value=9.4e-06  Score=70.69  Aligned_cols=137  Identities=16%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      ....|..|....||++....    .+..+.+|+......   ... ...+|+.+++.+..-+ ..++++.+.+.    ++
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDAD----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH-VVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCeEEEE
Confidence            35566778788999998643    357888888643210   011 1135677776664333 34566655322    78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       .+ +. .      .. ...+..+..                 .+...+..|.+
T Consensus       120 ~e~~~~~~L~~-------~~-------~~-~~-~------l~-~~~~~~i~~-----------------qi~~aL~~LH~  159 (335)
T 2owb_A          120 LELCRRRSLLE-------LH-------KR-RK-A------LT-EPEARYYLR-----------------QIVLGCQYLHR  159 (335)
T ss_dssp             ECCCTTCBHHH-------HH-------HH-HC-S------CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCCHHH-------HH-------hc-cC-C------CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865531       11       00 00 0      01 111222222                 22233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       160 --------~~ivH~dlkp~NIl~~~~-~~~kl~Dfg~~~  189 (335)
T 2owb_A          160 --------NRVIHRDLKLGNLFLNED-LEVKIGDFGLAT  189 (335)
T ss_dssp             --------TTEECSCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             --------CCCEecCCCchhEEEcCC-CCEEEeeccCce
Confidence                    148999999999999874 689999999874

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=97.99  E-value=2.8e-05  Score=68.28  Aligned_cols=142  Identities=9%  Similarity=0.033  Sum_probs=80.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-----c-cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-----E-VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-----~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--  108 (267)
                      -...|..|....||++....    ++..+.+|+.....     . ......+|+.+++.+..-+ .++++..+.  +.  
T Consensus        28 ~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           28 LCEVIGKGPFSVVRRCINRE----TGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPH-IVELLETYSSDGMLY  102 (351)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEE
T ss_pred             EeeEEeeCCCEEEEEEEECC----CCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEEE
Confidence            34667778889999997543    35789999864211     0 0111247888888885333 345565543  22  


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..          .+.+.    ......    .. ......+..                 .+...+..|
T Consensus       103 lv~e~~~g~~L~~----------~l~~~----~~~~~~----~~-~~~~~~i~~-----------------qi~~al~~l  146 (351)
T 3c0i_A          103 MVFEFMDGADLCF----------EIVKR----ADAGFV----YS-EAVASHYMR-----------------QILEALRYC  146 (351)
T ss_dssp             EEEECCSSCBHHH----------HHHHH----HHTTCC----CC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEeCCCCCCHHH----------HHHHh----cccCCC----CC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            8899999866532          11110    000000    00 011112221                 122333344


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~  229 (267)
                      -+        ..++|+|++|.|||++.++  ..+.|+||..+.
T Consensus       147 H~--------~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~  181 (351)
T 3c0i_A          147 HD--------NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAI  181 (351)
T ss_dssp             HH--------TTEECSCCSGGGEEECSSSTTCCEEECCCTTCE
T ss_pred             HH--------CCceeccCChHHeEEecCCCCCcEEEecCccee
Confidence            32        2499999999999998632  238999998773

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=97.99  E-value=2.8e-05  Score=68.99  Aligned_cols=151  Identities=14%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~  109 (267)
                      -...|..|....||++......   ...+..+.+|+.......  .....+|+++++.+.++.-..++++.+.+.    +
T Consensus        73 i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  152 (382)
T 3tt0_A           73 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  152 (382)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEE
Confidence            3566788888999999753211   012357889987654221  122247888888886665556677776432    8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCC-------CCCCchhHHHHHHHHHHHhhccCcccccccchhhHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-------GPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLK  182 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  182 (267)
                      |+||++|.++..              .+.+-......       .....-....+..+..                 .+.
T Consensus       153 v~e~~~~g~L~~--------------~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-----------------qi~  201 (382)
T 3tt0_A          153 IVEYASKGNLRE--------------YLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY-----------------QVA  201 (382)
T ss_dssp             EEECCTTCBHHH--------------HHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHH-----------------HHH
T ss_pred             EEEecCCCcHHH--------------HHHHhcccccccccccccccccccCHHHHHHHHH-----------------HHH
Confidence            999999876532              11111100000       0000011112222222                 122


Q ss_pred             HHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          183 DEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       183 ~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+..|-+        ..++|+|++|.|||++++ +.+.|+||+.|.
T Consensus       202 ~aL~~LH~--------~~ivH~Dlkp~NIll~~~-~~~kL~DFG~a~  239 (382)
T 3tt0_A          202 RGMEYLAS--------KKCIHRDLAARNVLVTED-NVMKIADFGLAR  239 (382)
T ss_dssp             HHHHHHHH--------TTCCCSCCCGGGEEECTT-CCEEECSCSCCC
T ss_pred             HHHHHHHh--------CCEecCCCCcceEEEcCC-CcEEEcccCccc
Confidence            33344432        148999999999999874 689999999775

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=97.98  E-value=1.5e-05  Score=70.47  Aligned_cols=74  Identities=18%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-------CceEEEEEC----C
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-------GPRLLGRFG----D  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-------~P~v~~~~~----~  107 (267)
                      -+..|..|....||++....    .+..+.+|+............+|+.+++.+.....       ..+++..+.    +
T Consensus        41 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~  116 (397)
T 1wak_A           41 VIRKLGWGHFSTVWLSWDIQ----GKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVN  116 (397)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred             EEEEeeecCCeeEEEEEecC----CCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCC
Confidence            45667778889999997543    35789999976543211122479999999986431       334555432    2


Q ss_pred             e----eEEEeecC
Q 024452          108 G----RVEEFIHA  116 (267)
Q Consensus       108 ~----~v~e~i~G  116 (267)
                      +    +|++|+.|
T Consensus       117 ~~~~~lv~e~~~~  129 (397)
T 1wak_A          117 GTHICMVFEVLGH  129 (397)
T ss_dssp             EEEEEEEECCCCC
T ss_pred             CceEEEEEeccCc
Confidence            2    77888855

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=97.98  E-value=1.5e-05  Score=69.58  Aligned_cols=138  Identities=13%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      .-+..|..|....||++....    .+..+.+|+.....  ..... ..+|+.+++.+...+ .++++....+ +   +|
T Consensus        18 ~~~~~lG~G~~g~V~~a~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           18 RLLKTIGKGNFAKVKLARHIL----TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN-IVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEECCEEEEE
Confidence            346677888889999998543    35789999874321  11111 136888888876433 3456665532 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       .   +    .+ +. ..      . ......+..                 .+...+..+-+
T Consensus        93 ~e~~~~~~L~~-------~---l----~~-~~-~l------~-~~~~~~~~~-----------------qi~~al~~lH~  132 (328)
T 3fe3_A           93 MEYASGGEVFD-------Y---L----VA-HG-RM------K-EKEARSKFR-----------------QIVSAVQYCHQ  132 (328)
T ss_dssp             ECCCTTCBHHH-------H---H----HH-HC-CC------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EECCCCCcHHH-------H---H----HH-cC-CC------C-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865431       0   1    00 00 00      0 011222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+||+++.+ +.+.|+||..|.
T Consensus       133 --------~~ivHrDlkp~NIll~~~-~~~kl~DFG~a~  162 (328)
T 3fe3_A          133 --------KRIVHRDLKAENLLLDAD-MNIKIADFGFSN  162 (328)
T ss_dssp             --------TTCCCSCCCGGGEEECTT-SCEEECSTTCCG
T ss_pred             --------CCEeccCCCHHHEEEcCC-CCEEEeeccCce
Confidence                    148999999999999874 689999999874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.98  E-value=1.6e-05  Score=66.62  Aligned_cols=138  Identities=19%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----cc-ChHHHHHHHHHHHhCCCCceEEEEECC----ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----FF-NRDDEIRTFECMSSQGQGPRLLGRFGD----GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~  109 (267)
                      -...|..|....||++...      +..+.+|+.......    .. ...+|..+++.+...++ +++++...+    .+
T Consensus        11 ~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A           11 LEEIIGIGGFGKVYRAFWI------GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI-IALRGVCLKEPNLCL   83 (271)
T ss_dssp             EEEEEEEETTEEEEEEEET------TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTB-CCEEEEECCC--CEE
T ss_pred             eeeeeccCCCeEEEEEEEc------CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCE-eeEEEEEecCCceEE
Confidence            3556677888999999853      478899987543211    11 12467777777754333 456666542    28


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++||++|.++..       +       +   +...      .. ...+..+..                 .+...+..|.
T Consensus        84 v~e~~~~~~L~~-------~-------~---~~~~------~~-~~~~~~i~~-----------------~l~~~l~~lH  122 (271)
T 3dtc_A           84 VMEFARGGPLNR-------V-------L---SGKR------IP-PDILVNWAV-----------------QIARGMNYLH  122 (271)
T ss_dssp             EEECCTTEEHHH-------H-------H---TSSC------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEEcCCCCCHHH-------H-------h---hcCC------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999865531       0       1   1110      11 111222222                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCC-------CCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEE-------TSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~-------~~~v~lIDwE~a~  229 (267)
                      +.     ....++|+|++|.||+++++       .+.+.|+||..+.
T Consensus       123 ~~-----~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~  164 (271)
T 3dtc_A          123 DE-----AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR  164 (271)
T ss_dssp             HS-----SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--
T ss_pred             hC-----CCCceeecCCchHHEEEecccccccccCcceEEccCCccc
Confidence            21     11238999999999999752       3569999999874

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.98  E-value=1.2e-05  Score=77.04  Aligned_cols=137  Identities=16%  Similarity=0.099  Sum_probs=82.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      +..|..|....||++....    .+..|.+|+.....    ........|..++..+..+...+.++..+.+.    +|+
T Consensus       346 ~~~LG~G~fG~V~~~~~~~----~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~  421 (674)
T 3pfq_A          346 LMVLGKGSFGKVMLSERKG----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM  421 (674)
T ss_dssp             EEESSBTTTBCEEEEEESS----SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEE
T ss_pred             EEEEccCCCEEEEEEEECC----CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEE
Confidence            4566888889999998653    35679999865321    01111135666666665555666777776532    899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..              .+.+-..  .      . ......|..                 .+...++.|-+ 
T Consensus       422 E~~~gg~L~~--------------~l~~~~~--~------~-~~~~~~~~~-----------------qi~~aL~~LH~-  460 (674)
T 3pfq_A          422 EYVNGGDLMY--------------HIQQVGR--F------K-EPHAVFYAA-----------------EIAIGLFFLQS-  460 (674)
T ss_dssp             ECCCSCBHHH--------------HHHHHSS--C------C-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             eCcCCCcHHH--------------HHHhcCC--C------C-HHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            9999865531              1111000  0      0 111222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       461 -------~gIiHrDLKp~NILl~~~-g~ikL~DFGla~  490 (674)
T 3pfq_A          461 -------KGIIYRDLKLDNVMLDSE-GHIKIADFGMCK  490 (674)
T ss_dssp             -------TSEECCCCCSTTEEECSS-SCEEECCCTTCE
T ss_pred             -------CCeEeccCChhhEEEcCC-CcEEEeecceee
Confidence                   249999999999999974 689999999775

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.97  E-value=6.6e-06  Score=71.60  Aligned_cols=77  Identities=14%  Similarity=0.044  Sum_probs=49.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc------ccccChHHHHHHHHHHHhCCCCceEEEEECCe----
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV------EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~------~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----  108 (267)
                      -...|..|....||++....    .+..+.+|+.....      .......+|+.+++.+..-+ .+++++.+.+.    
T Consensus        30 ~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~  104 (345)
T 3hko_A           30 LKGAIGQGSYGVVRVAIENQ----TRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPN-IARLYEVYEDEQYIC  104 (345)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEE
T ss_pred             ecceeeecCCeEEEEEEECC----CCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCC-cceeehhhccCCeEE
Confidence            35667778788999997543    35788899864321      11111246888888885333 34566665432    


Q ss_pred             eEEEeecCCCCC
Q 024452          109 RVEEFIHARTLS  120 (267)
Q Consensus       109 ~v~e~i~G~~l~  120 (267)
                      +|+||++|.++.
T Consensus       105 lv~e~~~gg~L~  116 (345)
T 3hko_A          105 LVMELCHGGHLL  116 (345)
T ss_dssp             EEEECCCSCBHH
T ss_pred             EEEeCCCCCcHH
Confidence            889999987653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=97.97  E-value=7.1e-06  Score=71.05  Aligned_cols=155  Identities=13%  Similarity=0.021  Sum_probs=79.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCce--EEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARN--VLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~--~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~  109 (267)
                      .-...|..|....||++....    ++..  +.+|...... .. .....+|+.+++.+..+.-.+++++...  +.  +
T Consensus        28 ~~~~~lg~G~~g~Vy~~~~~~----~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  103 (327)
T 1fvr_A           28 KFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL  103 (327)
T ss_dssp             EEEEEEECGGGCEEEEEEEEE----TTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceeeeecCCCceEEEEEEcc----CCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence            345667888889999997543    1333  3666654321 11 1112468888877755544456666653  22  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++...-..........+..+..-..     .  .-....+..+..                 .+...+..|-
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~i~~-----------------qi~~aL~~LH  159 (327)
T 1fvr_A          104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA-----S--TLSSQQLLHFAA-----------------DVARGMDYLS  159 (327)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBS-----C--SSCHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHhccccccccccccccccc-----c--cCCHHHHHHHHH-----------------HHHHHHHHHH
Confidence            899999876642100000000000000000000     0  000111222221                 1222333333


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.||+++++ +.+.|+||..+.
T Consensus       160 ~--------~~ivH~dlkp~NIl~~~~-~~~kL~Dfg~~~  190 (327)
T 1fvr_A          160 Q--------KQFIHRDLAARNILVGEN-YVAKIADFGLSR  190 (327)
T ss_dssp             H--------TTEECSCCSGGGEEECGG-GCEEECCTTCEE
T ss_pred             h--------CCccCCCCccceEEEcCC-CeEEEcccCcCc
Confidence            2        249999999999999874 689999998763

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=97.97  E-value=9.1e-06  Score=69.60  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=48.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      -...|..|....||++...... ...+..+.+|+...... . .....+|+.+++.+.. .-..++++...+    .+++
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~  105 (314)
T 2ivs_A           27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNH-PHVIKLYGACSQDGPLLLIV  105 (314)
T ss_dssp             EEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCC-TTBCCEEEEECSSSSCEEEE
T ss_pred             eeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCC-CceeeEEEEEecCCceEEEE
Confidence            3566777888999999752110 01246788998765421 1 1112367777776643 233456666542    2899


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      +|++|.++.
T Consensus       106 e~~~~~~L~  114 (314)
T 2ivs_A          106 EYAKYGSLR  114 (314)
T ss_dssp             ECCTTCBHH
T ss_pred             eecCCCCHH
Confidence            999987653

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.96  E-value=4e-05  Score=64.55  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=80.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----cccC---hHHHHHHHHHHHhCCCCceEEEEECC--e-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----VFFN---RDDEIRTFECMSSQGQGPRLLGRFGD--G-  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~~~d---r~~E~~~~~~l~~~gl~P~v~~~~~~--~-  108 (267)
                      -...|..|....||++....    .+..+++|+......    ...+   ..+|+.+++.+...++ ++++....+  . 
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-~~~~~~~~~~~~~   83 (283)
T 3bhy_A            9 MGEELGSGQFAIVRKCRQKG----TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNI-ITLHDIFENKTDV   83 (283)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEE
T ss_pred             hHHhhcccCceEEEEEEEcC----CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCe-eehhheecCCCeE
Confidence            35667778889999998643    357888987643311    0011   1478888888864333 445555432  2 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       ++++|++|.++..       ...       + + ..      .+ ...+..+..                 .+...+..
T Consensus        84 ~lv~e~~~~~~L~~-------~l~-------~-~-~~------~~-~~~~~~~~~-----------------~i~~~l~~  123 (283)
T 3bhy_A           84 VLILELVSGGELFD-------FLA-------E-K-ES------LT-EDEATQFLK-----------------QILDGVHY  123 (283)
T ss_dssp             EEEEECCCSCBHHH-------HHH-------H-H-SS------CC-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEeecCCCcHHH-------HHH-------h-c-CC------CC-HHHHHHHHH-----------------HHHHHHHH
Confidence             8899998866532       111       0 0 00      01 111222222                 12233334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~  229 (267)
                      |.+        ..++|+|++|.||++++++.   .+.|+||+.+.
T Consensus       124 lH~--------~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A          124 LHS--------KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             HHH--------TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             HHh--------CCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            432        14899999999999986421   68999999875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=97.96  E-value=2e-05  Score=67.40  Aligned_cols=136  Identities=13%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC----Ce----eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG----DG----RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~~----~v~e  112 (267)
                      ..|..|....||++....    .+..+++|+..... .   ..+|+.++..+..+--.++++..+.    +.    +|+|
T Consensus        24 ~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~-~---~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e   95 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKR----TQEKFALKMLQDCP-K---ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   95 (299)
T ss_dssp             EEEEEETTEEEEEEEETT----TCCEEEEEEEECSH-H---HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEEcC----CCcEEEEEEecccH-H---HHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEe
Confidence            457888889999998543    35789999875422 1   1367777755555543445555432    12    7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.+-..     .. .. ...+..+..+                 +...+..|-+  
T Consensus        96 ~~~~~~L~~--------------~l~~~~~-----~~-~~-~~~~~~i~~q-----------------i~~~l~~lH~--  135 (299)
T 3m2w_A           96 CLDGGELFS--------------RIQDRGD-----QA-FT-EREASEIMKS-----------------IGEAIQYLHS--  135 (299)
T ss_dssp             CCCSCBHHH--------------HHHHCTT-----CC-CB-HHHHHHHHHH-----------------HHHHHHHHHH--
T ss_pred             ecCCCcHHH--------------HHHhccC-----CC-CC-HHHHHHHHHH-----------------HHHHHHHHHh--
Confidence            998865532              1111000     00 11 1122222221                 2233334432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~~  230 (267)
                            ..++|+|++|.||+++.+  ++.+.|+||..|..
T Consensus       136 ------~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  169 (299)
T 3m2w_A          136 ------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  169 (299)
T ss_dssp             ------TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             ------CCcccCCCCHHHEEEecCCCCCcEEEeccccccc
Confidence                  139999999999999863  35699999998854

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=97.96  E-value=3.6e-05  Score=66.39  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=80.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc----c---ChHHHHHHHHHHHhCCCCceEEEEECC--e-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF----F---NRDDEIRTFECMSSQGQGPRLLGRFGD--G-  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~----~---dr~~E~~~~~~l~~~gl~P~v~~~~~~--~-  108 (267)
                      -...|..|....||++....    ++..+++|+........    .   ...+|+.+++.+...++ ++++..+.+  . 
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~   90 (321)
T 2a2a_A           16 IGEELGSGQFAIVKKCREKS----TGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNV-ITLHDVYENRTDV   90 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEE
T ss_pred             EeeEeeecCCEEEEEEEECC----CCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCc-ceEEEEEecCCEE
Confidence            34667778889999998643    35788999875432110    1   12478888888764443 445655432  2 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +++||++|.++..              .+.+   .    . ..+ ......+..                 .+...+..
T Consensus        91 ~lv~e~~~~~~L~~--------------~l~~---~----~-~~~-~~~~~~i~~-----------------qi~~aL~~  130 (321)
T 2a2a_A           91 VLILELVSGGELFD--------------FLAQ---K----E-SLS-EEEATSFIK-----------------QILDGVNY  130 (321)
T ss_dssp             EEEECCCCSCBHHH--------------HHHT---C----S-CEE-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEEcCCCCcHHH--------------HHHh---c----C-CCC-HHHHHHHHH-----------------HHHHHHHH
Confidence             8899998865531              1111   0    0 011 112222222                 12233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|.||++++++.   .+.|+||+.+.
T Consensus       131 lH~--------~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A          131 LHT--------KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             HHH--------TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             HHh--------CCeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence            432        14899999999999987432   68999999774

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=97.95  E-value=2.3e-05  Score=71.26  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....    ........|..++..+.. ....++++.+.+ .   +|
T Consensus        78 ~~~~LG~G~fG~V~~~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~h-p~Iv~l~~~~~~~~~~~lV  152 (437)
T 4aw2_A           78 ILKVIGRGAFGEVAVVKLKN----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDS-KWITTLHYAFQDDNNLYLV  152 (437)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCT-TTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEEeCCCEEEEEEEEcC----CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCC-CCEEEEEEEEeeCCEEEEE
Confidence            45667888889999998653    35788899864311    111112468888776643 333455555432 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+.   ..  .  . .......|..+                 +...++.|-+
T Consensus       153 ~Ey~~gg~L~~--------------~l~~~---~~--~--l-~e~~~~~~~~q-----------------i~~aL~~LH~  193 (437)
T 4aw2_A          153 MDYYVGGDLLT--------------LLSKF---ED--R--L-PEEMARFYLAE-----------------MVIAIDSVHQ  193 (437)
T ss_dssp             ECCCTTCBHHH--------------HHHTT---TT--C--C-CHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EecCCCCcHHH--------------HHHHc---cC--C--C-CHHHHHHHHHH-----------------HHHHHHHHHh
Confidence            99999865531              11111   00  0  0 01122223222                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|
T Consensus       194 --------~giiHrDLKp~NILl~~~-g~vkL~DFGla  222 (437)
T 4aw2_A          194 --------LHYVHRDIKPDNILMDMN-GHIRLADFGSC  222 (437)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTC
T ss_pred             --------CCeEecccCHHHeeEcCC-CCEEEcchhhh
Confidence                    238999999999999974 68999999977

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=97.95  E-value=6.6e-05  Score=64.89  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=85.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -...|..|....||++....... .....+.+|+.......  .....+|+.+++.+.++.-.+++++.+.++    +|+
T Consensus        50 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  129 (333)
T 2i1m_A           50 FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT  129 (333)
T ss_dssp             EEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEE
Confidence            35566778788999998643110 12247888887554211  111247888888886555556677776432    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..       ....-......-........  +-....+..+..                 .+...+..|-+ 
T Consensus       130 e~~~~g~L~~-------~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------qi~~~l~~lH~-  182 (333)
T 2i1m_A          130 EYCCYGDLLN-------FLRRKSRVLETDPAFAIANS--TASTRDLLHFSS-----------------QVAQGMAFLAS-  182 (333)
T ss_dssp             ECCTTEEHHH-------HHHHHHHHHSCC-------C--CCCHHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             ecCCCCcHHH-------HHHHhccccccccccccccc--ccCHHHHHHHHH-----------------HHHHHHHHHhc-
Confidence            9999876532       11111111100000000000  001111222221                 22233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       183 -------~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~~~  212 (333)
T 2i1m_A          183 -------KNCIHRDVAARNVLLTNG-HVAKIGDFGLAR  212 (333)
T ss_dssp             -------TTEECSCCSGGGCEEEGG-GEEEBCCCGGGC
T ss_pred             -------CCcccCCcccceEEECCC-CeEEECcccccc
Confidence                   149999999999999974 678999999875

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=97.94  E-value=1.4e-05  Score=74.75  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .+..|..|....||++....    .+..|.+|+.....    .......+|..+++.+....+ .++++.+.+  .  +|
T Consensus       189 ~~~~LG~G~fG~Vy~a~~~~----tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I-v~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          189 DFRVLGRGGFGEVFACQMKA----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI-VSLAYAFETKTDLCLV  263 (543)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCE-eeEEEEEeeCCEEEEE
Confidence            45667788889999998643    35789999874321    111111368888877744333 445554432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.+.....   .. .. ......|..+                 +...++.|-+
T Consensus       264 mE~~~gg~L~~--------------~l~~~~~~~---~~-l~-e~~~~~~~~q-----------------i~~aL~~LH~  307 (543)
T 3c4z_A          264 MTIMNGGDIRY--------------HIYNVDEDN---PG-FQ-EPRAIFYTAQ-----------------IVSGLEHLHQ  307 (543)
T ss_dssp             ECCCTTCBHHH--------------HHHTSSTTS---CS-CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEeccCCCHHH--------------HHHHhhccc---cc-cc-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876532              111111100   00 01 1122222222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       308 --------~gIvHrDLKP~NILl~~~-g~vkL~DFGla~  337 (543)
T 3c4z_A          308 --------RNIIYRDLKPENVLLDDD-GNVRISDLGLAV  337 (543)
T ss_dssp             --------TTEECCCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------cCCcccCCChHHEEEeCC-CCEEEeecceee
Confidence                    139999999999999974 689999999774

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.94  E-value=1.3e-05  Score=68.66  Aligned_cols=138  Identities=14%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEE-----------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRF-----------  105 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~-----------  105 (267)
                      ..+..|..|....||++....    .+..+++|.......... ...+|+.+++.+...++ .+++...           
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A           14 MDLKPLGCGGNGLVFSAVDND----CDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNI-VKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             EEEEECC-----CEEEEEETT----TTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTB-CCEEEEECTTSCBCCC--
T ss_pred             eEEEEeccCCCeEEEEEEECC----CCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCe-eEEEEecccccccccccc
Confidence            456777888889999998643    357899997654322111 12467777777754333 3344432           


Q ss_pred             ---C--C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccch
Q 024452          106 ---G--D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCL  178 (267)
Q Consensus       106 ---~--~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  178 (267)
                         .  +  .+++||++| ++.              ..+   ....      .. ......+..                
T Consensus        89 ~~~~~~~~~~lv~e~~~~-~L~--------------~~~---~~~~------~~-~~~~~~~~~----------------  127 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYMET-DLA--------------NVL---EQGP------LL-EEHARLFMY----------------  127 (320)
T ss_dssp             --CCSCSEEEEEEECCSE-EHH--------------HHH---TTCC------CC-HHHHHHHHH----------------
T ss_pred             ccccccCceeEEeeccCC-CHH--------------HHh---hcCC------cc-HHHHHHHHH----------------
Confidence               1  1  167888775 221              111   1100      01 111222222                


Q ss_pred             hhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       179 ~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                       .+...+..|.+.        .++|+|++|.||+++.+++.+.|+||+.+..
T Consensus       128 -qi~~~l~~lH~~--------~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~  170 (320)
T 2i6l_A          128 -QLLRGLKYIHSA--------NVLHRDLKPANLFINTEDLVLKIGDFGLARI  170 (320)
T ss_dssp             -HHHHHHHHHHHT--------TCBCCCCSGGGEEEETTTTEEEECCCTTCBC
T ss_pred             -HHHHHHHHHHhC--------CEecCCCCHHHEEEcCCCCeEEEccCccccc
Confidence             122333444321        3899999999999985445789999998753

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=97.94  E-value=9.8e-06  Score=70.13  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH-hCCCCceEEEEE--C----C--ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS-SQGQGPRLLGRF--G----D--GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~-~~gl~P~v~~~~--~----~--~~  109 (267)
                      -...|..|....||++...      +..+++|+.......  ....|.+++..+. ++.-..++++..  .    .  .+
T Consensus        41 ~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~~--~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           41 MVKQIGKGRYGEVWMGKWR------GEKVAVKVFFTTEEA--SWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             EEEEEEEETTEEEEEEEET------TEEEEEEEEEGGGHH--HHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             EEeEeecCCCeEEEEEEEC------CceEEEEEEeccccc--hhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            4667778888999999753      478999987432211  1123444443331 222223455443  2    1  17


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       ..       .   ...      .. ...+..+..                 .+...+..+-
T Consensus       113 v~e~~~~g~L~~-------~l-------~---~~~------~~-~~~~~~i~~-----------------~i~~~l~~lH  151 (337)
T 3mdy_A          113 ITDYHENGSLYD-------YL-------K---STT------LD-AKSMLKLAY-----------------SSVSGLCHLH  151 (337)
T ss_dssp             EECCCTTCBHHH-------HH-------H---HCC------BC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEeccCCCcHHH-------Hh-------h---ccC------CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899998866532       11       0   000      01 111111211                 1222333443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      ........+..++|+|++|.|||++.+ +.+.|+||..|
T Consensus       152 ~~~~~~~~~~~ivH~Dikp~Nill~~~-~~~kl~Dfg~a  189 (337)
T 3mdy_A          152 TEIFSTQGKPAIAHRDLKSKNILVKKN-GTCCIADLGLA  189 (337)
T ss_dssp             SCBCSTTCBCCEECSCCCGGGEEECTT-SCEEECCCTTC
T ss_pred             HhhhhhccCCCEEecccchHHEEECCC-CCEEEEeCCCc
Confidence            322122345679999999999999874 68999999987

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.94  E-value=2.6e-05  Score=66.82  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=77.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--C--eeEEEee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--GRVEEFI  114 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v~e~i  114 (267)
                      .+..|..|....||++....    .+..+++|+...... .....+|+.+++.+...++ +++++...  +  .++++|+
T Consensus        33 ~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~-~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           33 VLEKLGEGSYGSVYKAIHKE----TGQIVAIKQVPVESD-LQEIIKEISIMQQCDSPHV-VKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             EEEECC----CEEEEEEETT----TCCEEEEEEEETTSC-CHHHHHHHHHHHTCCCTTB-CCEEEEEEETTEEEEEEECC
T ss_pred             hheeeccCCCeEEEEEEECC----CCCEEEEEecCchHH-HHHHHHHHHHHHhCCCCCC-ccEEEEEEeCCEEEEEeecC
Confidence            45667788888999997643    357899998754321 1112468888777743333 44555442  2  2889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ...        .+...      .+ ...+..+..                 .+...+..|.+    
T Consensus       107 ~~~~L~~-------~~~--------~~~~~------~~-~~~~~~i~~-----------------~i~~~l~~lH~----  143 (314)
T 3com_A          107 GAGSVSD-------IIR--------LRNKT------LT-EDEIATILQ-----------------STLKGLEYLHF----  143 (314)
T ss_dssp             TTEEHHH-------HHH--------HHTCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCCHHH-------HHH--------hcCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8865532       111        01110      11 111222221                 12233334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       144 ----~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~~  173 (314)
T 3com_A          144 ----MRKIHRDIKAGNILLNTE-GHAKLADFGVAG  173 (314)
T ss_dssp             ----TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ----CCCcCCCcCHHHEEECCC-CCEEEeecccch
Confidence                138999999999999874 689999999873

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=97.94  E-value=3.1e-05  Score=67.27  Aligned_cols=75  Identities=13%  Similarity=-0.003  Sum_probs=47.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-----CceEEEEEC--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-----GPRLLGRFG--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-----~P~v~~~~~--~~--~  109 (267)
                      -+..|..|....||++.....   .+..+.+|+.............|+.+++.+.....     ...++..+.  +.  +
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~---~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (355)
T 2eu9_A           23 IVGNLGEGTFGKVVECLDHAR---GKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCI   99 (355)
T ss_dssp             EEEEEEEETTEEEEEEEETTT---TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEE
T ss_pred             EEEEeeccCCeEEEEEEecCC---CceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEE
Confidence            466678888899999975421   23578999876543211122478899988876432     334444432  22  7


Q ss_pred             EEEeecC
Q 024452          110 VEEFIHA  116 (267)
Q Consensus       110 v~e~i~G  116 (267)
                      ++||++|
T Consensus       100 v~e~~~~  106 (355)
T 2eu9_A          100 AFELLGK  106 (355)
T ss_dssp             EEECCCC
T ss_pred             EEeccCC
Confidence            8999865

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=97.94  E-value=2.9e-05  Score=66.39  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=79.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      -...|..|....||++....    .+..+++|+......... ...+|+.+++.+...++ +++++.+.+.    +++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A           13 FMEVLGSGAFSEVFLVKQRL----TGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENI-VTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEECC------HHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEEECC
T ss_pred             eeeeccCCCCceEEEEEECC----CCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCe-eehhhhcccCCEEEEEEEc
Confidence            45667788889999998643    357899998754321111 12478888888854443 4455554322    78999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .+-.  .      .. ...+..+..                 .+...+..|.+.  
T Consensus        88 ~~~~~L~~-------~l-------~~~~--~------~~-~~~~~~~~~-----------------qi~~~l~~lH~~--  125 (304)
T 2jam_A           88 VSGGELFD-------RI-------LERG--V------YT-EKDASLVIQ-----------------QVLSAVKYLHEN--  125 (304)
T ss_dssp             CCSCBHHH-------HH-------HHHS--C------CC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             CCCccHHH-------HH-------HHcC--C------CC-HHHHHHHHH-----------------HHHHHHHHHHHC--
Confidence            98765431       11       0000  0      00 111222221                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeee---eCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMI---DEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv---~~~~~~v~lIDwE~a~~  230 (267)
                            .++|+|++|.||++   ++ ++.+.|+||+.+..
T Consensus       126 ------~i~H~dikp~NIl~~~~~~-~~~~kl~Dfg~~~~  158 (304)
T 2jam_A          126 ------GIVHRDLKPENLLYLTPEE-NSKIMITDFGLSKM  158 (304)
T ss_dssp             ------TCCCCSCCGGGCEESSSST-TCCEEBCSCSTTCC
T ss_pred             ------CccccCCCHHHEEEecCCC-CCCEEEccCCccee
Confidence                  38999999999999   43 46799999998753

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=97.93  E-value=7.3e-06  Score=69.40  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=79.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEECC----ee
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD----GR  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~----~~  109 (267)
                      .-...|..|....||++.......   .....+++|+.........+ ..+|+.+++.+...+ .+++++.+.+    .+
T Consensus        11 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~l   89 (289)
T 4fvq_A           11 IFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKH-LVLNYGVCVCGDENIL   89 (289)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTT-BCCEEEEECCTTCCEE
T ss_pred             eeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEEeCCCCEE
Confidence            345667778889999997542100   00146888987543222111 136777777775333 3456666542    28


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       ...       + +...      .. ......+..                 .+...+..|-
T Consensus        90 v~e~~~~~~L~~-------~l~-------~-~~~~------~~-~~~~~~i~~-----------------qi~~~L~~LH  130 (289)
T 4fvq_A           90 VQEFVKFGSLDT-------YLK-------K-NKNC------IN-ILWKLEVAK-----------------QLAAAMHFLE  130 (289)
T ss_dssp             EEECCTTCBHHH-------HHH-------H-TGGG------CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEECCCCCCHHH-------HHH-------h-CCCC------CC-HHHHHHHHH-----------------HHHHHHHHHh
Confidence            899999866532       111       1 0000      01 011111221                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCC--------EEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSS--------ITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~--------v~lIDwE~a~  229 (267)
                      +.        .++|+|++|.||+++.+ +.        +.|+||..+.
T Consensus       131 ~~--------~ivH~Dlkp~NIll~~~-~~~~~~~~~~~kl~Dfg~~~  169 (289)
T 4fvq_A          131 EN--------TLIHGNVCAKNILLIRE-EDRKTGNPPFIKLSDPGISI  169 (289)
T ss_dssp             HT--------TCCCCCCCGGGEEEEEC-CBGGGTBCCEEEECCCCSCT
T ss_pred             hC--------CeECCCcCcceEEEecC-CcccccccceeeeccCcccc
Confidence            21        38999999999999874 44        8999999874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=97.93  E-value=1.3e-05  Score=69.73  Aligned_cols=134  Identities=19%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEeecCC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFIHAR  117 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i~G~  117 (267)
                      .|..|....||++....    .+..+.+|+......  .+..+|+.+++.+..+--.++++..+.+.    +|+||++|.
T Consensus        18 ~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~--~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~   91 (325)
T 3kn6_A           18 PLGEGSFSICRKCVHKK----SNQAFAVKIISKRME--ANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG   91 (325)
T ss_dssp             CSEEETTEEEEEEEETT----TCCEEEEEEEEGGGH--HHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             ccccCCCeEEEEEEECC----CCCEEEEEEEChhhh--hhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence            46777788999998643    357899998754321  12247888888887655456667665432    889999885


Q ss_pred             CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCC
Q 024452          118 TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQ  197 (267)
Q Consensus       118 ~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~  197 (267)
                      ++..              .+.+   . .+    .. ......+..                 .+...+..|-+       
T Consensus        92 ~L~~--------------~l~~---~-~~----~~-~~~~~~i~~-----------------qi~~~l~~LH~-------  124 (325)
T 3kn6_A           92 ELFE--------------RIKK---K-KH----FS-ETEASYIMR-----------------KLVSAVSHMHD-------  124 (325)
T ss_dssp             BHHH--------------HHHH---C-SC----CC-HHHHHHHHH-----------------HHHHHHHHHHH-------
T ss_pred             cHHH--------------HHHh---c-CC----CC-HHHHHHHHH-----------------HHHHHHHHHHH-------
Confidence            5421              1111   0 00    01 112222222                 12233344432       


Q ss_pred             cEEEEccCCCCCCeeeeCCCC--CEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETS--SITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~  229 (267)
                       ..++|+|++|.||+++.+++  .+.|+||+.|.
T Consensus       125 -~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~  157 (325)
T 3kn6_A          125 -VGVVHRDLKPENLLFTDENDNLEIKIIDFGFAR  157 (325)
T ss_dssp             -TTEECCCCCGGGEEEEC----CEEEECCCTTCE
T ss_pred             -CCCeecCCCHHHEEEecCCCcccEEEeccccce
Confidence             14999999999999986422  58999999885

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=97.93  E-value=0.00012  Score=63.13  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=73.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECCe----eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e  112 (267)
                      .+..|..|....||++....    .+..+++|+....... . ....+|+.+++.+..-+ ..++++.+.+.    +|+|
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKT----TGVYVALKEVKLDSEEGTPSTAIREISLMKELKHEN-IVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ----------CEEEEEECSS----SCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTT-BCCEEEEECCTTEEEEEEE
T ss_pred             EeeEECCCCCEEEEEEEECC----CCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCC-cceEEEEEEECCeEEEEEE
Confidence            45667888889999997543    3578888876443211 1 11246888887775433 34566665432    8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++| .+.              ..+..-.....+..  .. ...+..+..                 .+...+..|-+  
T Consensus        84 ~~~~-~L~--------------~~l~~~~~~~~~~~--~~-~~~~~~~~~-----------------qi~~aL~~lH~--  126 (317)
T 2pmi_A           84 FMDN-DLK--------------KYMDSRTVGNTPRG--LE-LNLVKYFQW-----------------QLLQGLAFCHE--  126 (317)
T ss_dssp             CCCC-BHH--------------HHHHHHHSSSCCCC--CC-HHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             ecCC-CHH--------------HHHHhccccccccC--CC-HHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            9986 221              11111111111100  11 112222221                 12233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       127 ------~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~~~  156 (317)
T 2pmi_A          127 ------NKILHRDLKPQNLLINKR-GQLKLGDFGLAR  156 (317)
T ss_dssp             ------TTEECCCCCGGGEEECTT-CCEEECCCSSCE
T ss_pred             ------CCeeeCCCChHHeEEcCC-CCEEECcCccce
Confidence                  249999999999999874 689999999774

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.93  E-value=1.8e-05  Score=66.64  Aligned_cols=146  Identities=10%  Similarity=0.016  Sum_probs=79.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEE--CC----ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRF--GD----GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~----~~  109 (267)
                      -+..|..|....||++....    ++..+++|+......  ... ...+|+.+++.+..-++ .++++..  .+    .+
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A           10 VLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI-VRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEEGGGTEEEE
T ss_pred             eehhccCCCCcEEEEEEECC----CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCC-CeEEEEEecCCCceEEE
Confidence            45677778888999998643    357888898754321  111 11367788877754333 4455533  22    28


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      ++||++|.++..       ....-    .   ....+    .+ ...+..+..                 .+...+..+-
T Consensus        85 v~e~~~~~~L~~-------~l~~~----~---~~~~~----~~-~~~~~~i~~-----------------~i~~~l~~lH  128 (279)
T 2w5a_A           85 VMEYCEGGDLAS-------VITKG----T---KERQY----LD-EEFVLRVMT-----------------QLTLALKECH  128 (279)
T ss_dssp             EEECCTTEEHHH-------HHHHH----H---HTTCC----CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEeCCCCCCHHH-------HHHhh----c---ccCCC----CC-HHHHHHHHH-----------------HHHHHHHHHh
Confidence            899999866532       11110    0   00000    01 111222222                 1222333343


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.   ......++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       129 ~~---~~~~~~ivH~dl~p~NIl~~~~-~~~kl~dfg~~~  164 (279)
T 2w5a_A          129 RR---SDGGHTVLHRDLKPANVFLDGK-QNVKLGDFGLAR  164 (279)
T ss_dssp             HH---C------CCCCCSGGGEEECSS-SCEEECCCCHHH
T ss_pred             cc---cCCCCeeEEeccchhhEEEcCC-CCEEEecCchhe
Confidence            32   1123569999999999999874 689999999774

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.93  E-value=1.8e-05  Score=67.41  Aligned_cols=140  Identities=16%  Similarity=0.101  Sum_probs=76.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEE--CCe---eEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRF--GDG---RVEE  112 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~---~v~e  112 (267)
                      ...|..|....||++...... +....+.+|....... .. ....+|..+++.+...++. +++...  .++   ++++
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~~~v~e  107 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL-SLLGICLRSEGSPLVVLP  107 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC------CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBC-CCCEEECCSSSCCEEEEE
T ss_pred             cceeeecCCceEEEEEEecCC-CceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEe-eeeeEEEcCCCceEEEEe
Confidence            456678888999999754211 1123467777654321 11 1123677777777543443 344442  222   8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       .       +.   ....    ... ...+..+..+                 +...+..|.+. 
T Consensus       108 ~~~~~~L~~-------~-------l~---~~~~----~~~-~~~~~~i~~q-----------------l~~~l~~lH~~-  147 (298)
T 3f66_A          108 YMKHGDLRN-------F-------IR---NETH----NPT-VKDLIGFGLQ-----------------VAKGMKYLASK-  147 (298)
T ss_dssp             CCTTCBHHH-------H-------HH---CTTC----CCC-HHHHHHHHHH-----------------HHHHHHHHHHT-
T ss_pred             CCCCCCHHH-------H-------HH---hccc----CCC-HHHHHHHHHH-----------------HHHHHHHHHhC-
Confidence            999865532       1       11   1000    011 1122222221                 22333344321 


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             .++|+|++|.||+++++ +.+.|+||..|.
T Consensus       148 -------~i~H~dikp~Nil~~~~-~~~kl~Dfg~a~  176 (298)
T 3f66_A          148 -------KFVHRDLAARNCMLDEK-FTVKVADFGLAR  176 (298)
T ss_dssp             -------TCCCSCCSGGGEEECTT-CCEEECSCGGGC
T ss_pred             -------CccCCCCchheEEECCC-CCEEECcccccc
Confidence                   38999999999999874 689999999874

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=97.93  E-value=1.7e-05  Score=70.42  Aligned_cols=136  Identities=18%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEE--CC----ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRF--GD----GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~----~~  109 (267)
                      -+..|..|....||++....    .+..+.+|........   .....+|..+++.+..+.-..+++..+  ++    .+
T Consensus        13 ~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~l   88 (388)
T 3oz6_A           13 LVKKLGKGAYGIVWKSIDRR----TGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYL   88 (388)
T ss_dssp             EEEC-------CEEEEEETT----TCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEE
T ss_pred             EEEEeeeCCCeEEEEEEECC----CCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEE
Confidence            45667888889999997543    3578889876432111   111236888888887555455666664  22    28


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|++| .+.              ..+..   ...      . ......+..                 .+...++.|-
T Consensus        89 v~e~~~~-~L~--------------~~~~~---~~~------~-~~~~~~i~~-----------------qi~~~L~~LH  126 (388)
T 3oz6_A           89 VFDYMET-DLH--------------AVIRA---NIL------E-PVHKQYVVY-----------------QLIKVIKYLH  126 (388)
T ss_dssp             EEECCSE-EHH--------------HHHHH---TCC------C-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EecccCc-CHH--------------HHHHc---CCC------C-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            8999875 111              11111   000      1 011111211                 1223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       127 ~--------~~ivHrDlkp~NIll~~~-~~~kl~DFG~a~  157 (388)
T 3oz6_A          127 S--------GGLLHRDMKPSNILLNAE-CHVKVADFGLSR  157 (388)
T ss_dssp             H--------TTEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             h--------CCEEeCCCCHHHeEEcCC-CCEEecCCcccc
Confidence            2        138999999999999874 689999999884

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=97.93  E-value=3e-05  Score=67.87  Aligned_cols=149  Identities=16%  Similarity=0.092  Sum_probs=81.7

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----e
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----R  109 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~  109 (267)
                      ++. -..|..|.-..||+....... ..++..+.+|+......... +-.+|+++++.+..-. .-++++.+.+.    +
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~Hpn-IV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH-IVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECSSSSEEE
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEE
Confidence            344 345777888999999764211 11346788888755432211 1247888888775333 34567776432    8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCC---------CCCchhHHHHHHHHHHHhhccCcccccccchhh
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPG---------PRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT  180 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
                      |+||++|..+..-                 +|......         ...+-.+.....+..                 .
T Consensus       121 V~Ey~~~G~L~~~-----------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-----------------q  166 (329)
T 4aoj_A          121 VFEYMRHGDLNRF-----------------LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS-----------------Q  166 (329)
T ss_dssp             EEECCTTCBHHHH-----------------HHTSSCC-----------CCSCCHHHHHHHHH-----------------H
T ss_pred             EEEcCCCCcHHHH-----------------HHhcCcccccccccccccCCCCCHHHHHHHHH-----------------H
Confidence            9999998776421                 11110000         000011111222221                 1


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +...+.+|-+        ..++|+|++|.|||++++ ..+.|.||..|.
T Consensus       167 ia~gl~yLH~--------~~iiHRDLKp~NILl~~~-~~~Ki~DFGla~  206 (329)
T 4aoj_A          167 VAAGMVYLAG--------LHFVHRDLATRNCLVGQG-LVVKIGDFGMSR  206 (329)
T ss_dssp             HHHHHHHHHH--------TTCCCSCCCGGGEEEETT-TEEEECCCC---
T ss_pred             HHHHHHHHhc--------CCeecccccHhhEEECCC-CcEEEcccccce
Confidence            2233344432        238999999999999974 689999999875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=97.93  E-value=1.7e-05  Score=67.02  Aligned_cols=138  Identities=12%  Similarity=0.051  Sum_probs=79.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .-...|..|....||++....    .+..+++|+......   ......+|+.+++.+...++ ++++....+  .  ++
T Consensus         9 ~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            9 DVKEELGKGAFSVVRRCVHKT----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI-VRLHDSIQEESFHYLV   83 (284)
T ss_dssp             EEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             hhhhhhcCcCCeEEEEEEEcC----CCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCc-CeEEEEEEcCCEEEEE
Confidence            345667778889999997543    357899998754321   11112468888888854333 455665432  2  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..          .+..       .. +    .. ...+..+..                 .+...+..|.+
T Consensus        84 ~e~~~~~~l~~----------~~~~-------~~-~----~~-~~~~~~~~~-----------------~i~~~l~~lH~  123 (284)
T 3kk8_A           84 FDLVTGGELFE----------DIVA-------RE-F----YS-EADASHCIQ-----------------QILESIAYCHS  123 (284)
T ss_dssp             ECCCCSCBHHH----------HHHH-------HS-S----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCCHHH----------HHHh-------cC-C----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998765421          1100       00 0    00 111222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a  228 (267)
                              ..++|+|++|.||+++.++  ..+.|+||+.+
T Consensus       124 --------~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~  155 (284)
T 3kk8_A          124 --------NGIVHRNLKPENLLLASKAKGAAVKLADFGLA  155 (284)
T ss_dssp             --------TTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             --------CCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence                    1399999999999997642  23899999987

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=97.93  E-value=3.3e-05  Score=66.62  Aligned_cols=140  Identities=11%  Similarity=0.028  Sum_probs=77.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-ccccC-hHHHHHHHHHHHhCCCCceEEEEEC----------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG----------  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~----------  106 (267)
                      -+..|..|.-..||++....    ++..|.+|+-.... ..... -.+|+.+++.|..-.+ .+++..+.          
T Consensus         9 ~~~~lG~G~fg~V~~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnI-V~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            9 PIQCLGRGGFGVVFEAKNKV----DDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI-VRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             EEEEEEECC--EEEEEEETT----TCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTB-CCEEEEEEEEC-------
T ss_pred             EeeEEecCCCeEEEEEEECC----CCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCC-CeEEEEEEecCccccccc
Confidence            35677788889999998543    35788888653221 11111 1478888887753232 34444321          


Q ss_pred             ---C---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhh
Q 024452          107 ---D---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT  180 (267)
Q Consensus       107 ---~---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
                         .   .+++||++|..+..              .+.   .... ..  .........+..                 .
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~--------------~l~---~~~~-~~--~~~~~~~~~i~~-----------------q  126 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKD--------------WMN---GRCT-IE--ERERSVCLHIFL-----------------Q  126 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHH--------------HHH---TCCS-GG--GSCHHHHHHHHH-----------------H
T ss_pred             cCCCcEEEEEEecCCCCcHHH--------------HHH---hcCC-CC--hhHHHHHHHHHH-----------------H
Confidence               1   27899998866532              111   1000 00  000111222222                 2


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.+.++.+-+        ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       127 i~~al~ylH~--------~~IiHRDlKp~NILl~~~-~~vKl~DFGla~  166 (299)
T 4g31_A          127 IAEAVEFLHS--------KGLMHRDLKPSNIFFTMD-DVVKVGDFGLVT  166 (299)
T ss_dssp             HHHHHHHHHH--------TTCCCCCCCGGGEEECTT-CCEEECCCCCC-
T ss_pred             HHHHHHHHHH--------CcCccccCcHHHeEECCC-CcEEEccCccce
Confidence            2233344432        238999999999999874 689999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=97.93  E-value=2.5e-05  Score=70.42  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    .+..|.+|+.....    .......+|..+++.+..-. ..++++.+.+.    +|
T Consensus        73 ~~~~LG~G~fG~V~~~~~~~----~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~-Iv~l~~~~~~~~~~~lV  147 (410)
T 3v8s_A           73 VVKVIGRGAFGEVQLVRHKS----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW-VVQLFYAFQDDRYLYMV  147 (410)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EEEEEEcCCCEEEEEEEECC----CCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEE
Confidence            45667888889999998653    35788899864311    00011136888887764333 34566655432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.   ....     +.  .....|..+                 +...++.|-+
T Consensus       148 ~E~~~gg~L~~--------------~l~---~~~~-----~e--~~~~~~~~q-----------------i~~aL~~LH~  186 (410)
T 3v8s_A          148 MEYMPGGDLVN--------------LMS---NYDV-----PE--KWARFYTAE-----------------VVLALDAIHS  186 (410)
T ss_dssp             ECCCTTEEHHH--------------HHH---HCCC-----CH--HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeCCCCCcHHH--------------HHH---cCCC-----CH--HHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865531              111   1111     11  112222221                 2223344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       187 --------~givHrDLKp~NILl~~~-g~ikL~DFG~a~  216 (410)
T 3v8s_A          187 --------MGFIHRDVKPDNMLLDKS-GHLKLADFGTCM  216 (410)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------CCeEeccCCHHHeeECCC-CCEEEeccceeE
Confidence                    239999999999999874 689999999873

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=97.92  E-value=3.5e-05  Score=66.75  Aligned_cols=140  Identities=14%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHH-hCCCCceEEEEEC--C------ee
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMS-SQGQGPRLLGRFG--D------GR  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~-~~gl~P~v~~~~~--~------~~  109 (267)
                      -...|..|....||++...      +..+++|+.......  ...+|.++++.+. ++.-..++++...  +      .+
T Consensus        46 ~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~~--~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~l  117 (342)
T 1b6c_B           46 LQESIGKGRFGEVWRGKWR------GEEVAVKIFSSREER--SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL  117 (342)
T ss_dssp             EEEEEEEETTEEEEEEEET------TEEEEEEEECGGGHH--HHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEE
T ss_pred             EEeeecCCCCcEEEEEEEc------CccEEEEEeCchhHH--HHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEE
Confidence            4566777878899999752      478999997543221  1136777776632 2222344555532  2      27


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|++|.++..       .       +.+   ..      .. ......+..                 .+...+..|-
T Consensus       118 v~e~~~~g~L~~-------~-------l~~---~~------~~-~~~~~~i~~-----------------~i~~~l~~lH  156 (342)
T 1b6c_B          118 VSDYHEHGSLFD-------Y-------LNR---YT------VT-VEGMIKLAL-----------------STASGLAHLH  156 (342)
T ss_dssp             EECCCTTCBHHH-------H-------HHH---CC------BC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEeecCCCcHHH-------H-------Hhc---cC------cc-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            899998865532       1       111   00      01 111111211                 1222333443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      ...........++|+|++|.||+++.+ +.+.|+||+.+
T Consensus       157 ~~~~~~~~~~~ivH~Dlkp~NIll~~~-~~~kL~Dfg~~  194 (342)
T 1b6c_B          157 MEIVGTQGKPAIAHRDLKSKNILVKKN-GTCCIADLGLA  194 (342)
T ss_dssp             CCBCSTTCBCEEECSCCSGGGEEECTT-SCEEECCCTTC
T ss_pred             HHHhhhcccCCeeeCCCCHHHEEECCC-CCEEEEECCCc
Confidence            221122335789999999999999874 68999999976

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=97.92  E-value=1.7e-05  Score=67.96  Aligned_cols=141  Identities=15%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -...|..|....||++....    ++..+++|+.....   .. .....+|+.+++.+..-+ .+++++.+.  +.  ++
T Consensus        36 ~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           36 IEKKIGRGQFSEVYRAACLL----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN-VIKYYASFIEDNELNIV  110 (310)
T ss_dssp             EEEEEECC--CEEEEEEETT----TCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             EEEeecCCCCceEEEEEEcC----CCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCcEEEE
Confidence            34667788889999998543    35789999875421   11 111136777777664333 344555542  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ...       .......+    .. ...+..+..                 .+...+..|.+
T Consensus       111 ~e~~~~~~L~~-------~l~-------~~~~~~~~----~~-~~~~~~i~~-----------------qi~~~l~~LH~  154 (310)
T 2wqm_A          111 LELADAGDLSR-------MIK-------HFKKQKRL----IP-ERTVWKYFV-----------------QLCSALEHMHS  154 (310)
T ss_dssp             EECCCSCBHHH-------HHH-------HHHHTTCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCCHHH-------HHH-------HhcccccC----CC-HHHHHHHHH-----------------HHHHHHHHHhh
Confidence            99999866532       111       11110000    01 111222221                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       155 --------~~i~H~dl~p~NIl~~~~-~~~kl~Dfg~~~  184 (310)
T 2wqm_A          155 --------RRVMHRDIKPANVFITAT-GVVKLGDLGLGR  184 (310)
T ss_dssp             --------TTCCCCCCCGGGEEECTT-SCEEECCC----
T ss_pred             --------CCeeCCCCcHHHEEEcCC-CCEEEEecccee
Confidence                    148999999999999874 689999999764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.92  E-value=1.6e-05  Score=69.61  Aligned_cols=77  Identities=12%  Similarity=0.042  Sum_probs=48.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC----CceEEEEEC--Ce--e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ----GPRLLGRFG--DG--R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl----~P~v~~~~~--~~--~  109 (267)
                      .-+..|..|....||++....    .+..+.+|+.............|..+++.+....+    ..++++.+.  +.  +
T Consensus        38 ~~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~l  113 (360)
T 3llt_A           38 LVIRKMGDGTFGRVLLCQHID----NKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCL  113 (360)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEE
T ss_pred             EEEEEEcccCCeEEEEEEECC----CCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEE
Confidence            346677888889999998643    35789999876432211222468888888874433    244555442  22  7


Q ss_pred             EEEeecCCCC
Q 024452          110 VEEFIHARTL  119 (267)
Q Consensus       110 v~e~i~G~~l  119 (267)
                      |++|+ |.++
T Consensus       114 v~e~~-~~~L  122 (360)
T 3llt_A          114 IFEPL-GPSL  122 (360)
T ss_dssp             EECCC-CCBH
T ss_pred             EEcCC-CCCH
Confidence            78887 5433

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.91  E-value=2.2e-05  Score=66.58  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=80.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e  112 (267)
                      -...|..|....||++....    .+..+++|+.......  .-...+|+++++.+...++ ++++..+.+    .+|+|
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           26 FKRKLGSGAFGDVHLVEERS----SGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNI-IKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTB-CCEEEEEECSSEEEEEEC
T ss_pred             ecceeccCCCeEEEEEEEcc----CCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchH-HhHHHheecCCeEEEEEE
Confidence            45667788889999998643    3578888876543211  1112478888877754333 445665532    28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..          .+....    ....+    .. ...+..+..                 .+...++.|-+. 
T Consensus       101 ~~~~~~L~~----------~l~~~~----~~~~~----~~-~~~~~~i~~-----------------qi~~~L~~LH~~-  143 (285)
T 3is5_A          101 TCEGGELLE----------RIVSAQ----ARGKA----LS-EGYVAELMK-----------------QMMNALAYFHSQ-  143 (285)
T ss_dssp             CCSCCBHHH----------HHHHHH----HHTCC----CC-HHHHHHHHH-----------------HHHHHHHHHHHT-
T ss_pred             eCCCCcHHH----------HHHhhh----hcccC----CC-HHHHHHHHH-----------------HHHHHHHHHHhC-
Confidence            998865532          111000    00000    01 111222221                 222333444321 


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                             .++|+|++|.||+++++  .+.+.|+||+.+.
T Consensus       144 -------~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A          144 -------HVVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             -------TCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             -------CEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence                   38999999999999542  2569999999885

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=97.91  E-value=1.9e-05  Score=72.59  Aligned_cols=137  Identities=14%  Similarity=0.043  Sum_probs=80.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -...|..|....||++....    .+..+.+|+......   ... ...+|+.+++.+..-. ..+++....+  .  +|
T Consensus        20 l~~~LG~G~fg~V~~a~~~~----~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHEL----TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPH-IIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETT----TCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEE
Confidence            45667888889999998643    357899998753210   011 1146777777664323 3456665532  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++...              +   ...    .. .. ......+..                 .+...+..+-+
T Consensus        95 ~E~~~gg~L~~~--------------l---~~~----~~-l~-~~~~~~i~~-----------------qi~~aL~~LH~  134 (476)
T 2y94_A           95 MEYVSGGELFDY--------------I---CKN----GR-LD-EKESRRLFQ-----------------QILSGVDYCHR  134 (476)
T ss_dssp             EECCSSEEHHHH--------------T---TSS----SS-CC-HHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EeCCCCCcHHHH--------------H---Hhc----CC-CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            999998655320              0   000    00 01 111222222                 12223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       135 --------~givHrDLkp~NIll~~~-~~vkL~DFG~a~  164 (476)
T 2y94_A          135 --------HMVVHRDLKPENVLLDAH-MNAKIADFGLSN  164 (476)
T ss_dssp             --------TTEECSCCSGGGEEECTT-CCEEECCCSSCE
T ss_pred             --------CCCCcccccHHHEEEecC-CCeEEEeccchh
Confidence                    248999999999999874 689999999774

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=97.91  E-value=5e-05  Score=65.94  Aligned_cols=49  Identities=18%  Similarity=0.055  Sum_probs=32.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--------c-ccChHHHHHHHHHHHh
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--------V-FFNRDDEIRTFECMSS   94 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--------~-~~dr~~E~~~~~~l~~   94 (267)
                      ...|..|....||++...      +..+.+|+......        . .-...+|+.+++.+..
T Consensus        25 ~~~lG~G~~g~V~~~~~~------~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   82 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIAD------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSL   82 (336)
T ss_dssp             CEEEEEETTEEEEEEEET------TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHH
T ss_pred             eeeecccCceEEEEEEeC------CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHH
Confidence            456777878999999752      47888888653311        0 1112589999998873

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=97.90  E-value=5.4e-05  Score=66.10  Aligned_cols=137  Identities=17%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc----c-cc-ChHHHHHHHHHHHhCCCCceEEEEECC----e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE----V-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD----G  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~----~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----~  108 (267)
                      .+..|..|....||++....    .+..+++|+......    . .. ...+|+.+++.+..-+ ..++++.+.+    .
T Consensus        14 ~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A           14 KLDFLGEGQFATVYKARDKN----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGLLDAFGHKSNIS   88 (346)
T ss_dssp             EEEEEEEETTEEEEEEECSS----CCSEEEEEEC------------CTHHHHHHHHHHHCCCTT-BCCEEEEECCTTCCE
T ss_pred             EEeEEeecCCEEEEEEEECC----CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCC-CCeEEEEEeeCCceE
Confidence            46677888889999998543    357899998754221    1 11 1147888888875333 3456666542    2


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|++|++| .+..              .+   .....+...     ..+..+..+                 +...+..|
T Consensus        89 lv~e~~~~-~l~~--------------~~---~~~~~~~~~-----~~~~~~~~q-----------------i~~~l~~l  128 (346)
T 1ua2_A           89 LVFDFMET-DLEV--------------II---KDNSLVLTP-----SHIKAYMLM-----------------TLQGLEYL  128 (346)
T ss_dssp             EEEECCSE-EHHH--------------HH---TTCCSSCCS-----SHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEcCCC-CHHH--------------HH---HhcCcCCCH-----HHHHHHHHH-----------------HHHHHHHH
Confidence            88999986 2210              00   111100110     112222221                 22233344


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+.        .++|+|++|+||+++.+ +.+.|+||+.|.
T Consensus       129 H~~--------~ivH~Dlkp~Nil~~~~-~~~kl~Dfg~a~  160 (346)
T 1ua2_A          129 HQH--------WILHRDLKPNNLLLDEN-GVLKLADFGLAK  160 (346)
T ss_dssp             HHT--------TCCCCCCCGGGEEECTT-CCEEECCCGGGS
T ss_pred             HHC--------CEECCCCCHHHEEEcCC-CCEEEEecccce
Confidence            321        38999999999999874 689999999774

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.90  E-value=3.2e-05  Score=65.07  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=80.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -...|..|....||++....    .+..+++|+.....   ..... ..+|+.+++.+...+ .++++....+.    ++
T Consensus        15 ~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           15 VGNLLGKGSFAGVYRAESIH----TGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS-ILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTT-BCCEEEEEECSSEEEEE
T ss_pred             eeeeecCCCceEEEEEEEcc----CCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCC-eEeEEEEEccCCeEEEE
Confidence            35667778889999998543    35789999874321   01111 135777666664333 34556655322    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..              .+.   ....+    .. ...+..+..                 .+...+..|.+
T Consensus        90 ~e~~~~~~L~~--------------~l~---~~~~~----~~-~~~~~~~~~-----------------qi~~~l~~lH~  130 (278)
T 3cok_A           90 LEMCHNGEMNR--------------YLK---NRVKP----FS-ENEARHFMH-----------------QIITGMLYLHS  130 (278)
T ss_dssp             EECCTTEEHHH--------------HHH---TCSSC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCcHHH--------------HHh---hccCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865431              111   10000    01 112222222                 22233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .        .++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       131 ~--------~i~H~dl~p~Nili~~~-~~~kl~dfg~~~~  161 (278)
T 3cok_A          131 H--------GILHRDLTLSNLLLTRN-MNIKIADFGLATQ  161 (278)
T ss_dssp             T--------TEECSSCCGGGEEECTT-CCEEECCCTTCEE
T ss_pred             C--------CeecCCCCHHHEEEcCC-CCEEEEeecceee
Confidence            1        48999999999999874 6899999998754

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.90  E-value=4.5e-05  Score=68.72  Aligned_cols=139  Identities=16%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---------ccccChHHHHHHHHHHHhCCCCceEEEEEC-Ce
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---------EVFFNRDDEIRTFECMSSQGQGPRLLGRFG-DG  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---------~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~-~~  108 (267)
                      -...|..|....||++....    .+..+.+|+.....         .......+|+.+++.+..-++. +++.... +.
T Consensus       139 ~~~~LG~G~~g~V~~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv-~l~~~~~~~~  213 (419)
T 3i6u_A          139 MSKTLGSGACGEVKLAFERK----TCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCII-KIKNFFDAED  213 (419)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBC-CCCEEEESSE
T ss_pred             EEeEEeeCCCeEEEEEEECC----CCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEe-eEEEEEecCc
Confidence            45667778889999997543    35789999864321         0111225789999888554443 3444443 22


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        +|+||++|..+...-.                 ..    .. .. ......+..                 .+...+.
T Consensus       214 ~~lv~e~~~~g~L~~~l~-----------------~~----~~-~~-~~~~~~i~~-----------------qi~~~l~  253 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVV-----------------GN----KR-LK-EATCKLYFY-----------------QMLLAVQ  253 (419)
T ss_dssp             EEEEEECCTTCBGGGGTS-----------------SS----CC-CC-HHHHHHHHH-----------------HHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHh-----------------cc----CC-CC-HHHHHHHHH-----------------HHHHHHH
Confidence              8899999876632110                 00    00 01 111222222                 1223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~~  230 (267)
                      .|-+.        .++|+|++|.|||++.++  ..+.|+||..|..
T Consensus       254 ~LH~~--------~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~  291 (419)
T 3i6u_A          254 YLHEN--------GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  291 (419)
T ss_dssp             HHHHT--------TCCCSCCCGGGEEESSSSSSCCEEECCSSTTTS
T ss_pred             HHHHC--------CccccCCChHhEEEecCCCcceEEEeeccccee
Confidence            44321        389999999999997532  2489999998853

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=97.89  E-value=6.7e-05  Score=67.34  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---hHHHHHHHHHHHhCCCCceEEEEEC------C--
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---RDDEIRTFECMSSQGQGPRLLGRFG------D--  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---r~~E~~~~~~l~~~gl~P~v~~~~~------~--  107 (267)
                      -+..|..|.-..||++....    .+..|.+|+-........+   -.+|+++++.+..-. .-+++....      +  
T Consensus        58 ~~~~lG~G~fG~V~~a~~~~----t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           58 IIETIGNGAYGVVSSARRRL----TGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDN-IIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSSCTTTCC
T ss_pred             EEEEEecccCeEEEEEEECC----CCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCC-cceEeeeeecccccccCC
Confidence            45677888889999998643    3578999986543211111   136999998885432 234555432      1  


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        .+|+||++|. +.              ..+   +..    .  +-....+..|..+                 +...+
T Consensus       133 ~~~ivmE~~~g~-L~--------------~~i---~~~----~--~l~~~~~~~~~~q-----------------il~al  171 (398)
T 4b99_A          133 SVYVVLDLMESD-LH--------------QII---HSS----Q--PLTLEHVRYFLYQ-----------------LLRGL  171 (398)
T ss_dssp             CEEEEEECCSEE-HH--------------HHH---TSS----S--CCCHHHHHHHHHH-----------------HHHHH
T ss_pred             EEEEEEeCCCCC-HH--------------HHH---Hhc----C--CCCHHHHHHHHHH-----------------HHHHH
Confidence              2889999872 11              111   111    0  0111223333332                 22333


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.+-+        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       172 ~ylH~--------~~iiHRDlKP~NIl~~~~-~~~Ki~DFGla~  206 (398)
T 4b99_A          172 KYMHS--------AQVIHRDLKPSNLLVNEN-CELKIGDFGMAR  206 (398)
T ss_dssp             HHHHH--------TTCBCCCCCGGGEEECTT-CCEEECCCTTCB
T ss_pred             HHHHH--------CcCcCCCcCccccccCCC-CCEEEeecceee
Confidence            44432        247999999999999974 789999999874

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.89  E-value=3e-05  Score=73.94  Aligned_cols=141  Identities=11%  Similarity=0.009  Sum_probs=82.8

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhC--CCCceEEEEECC-
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQ--GQGPRLLGRFGD-  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~--gl~P~v~~~~~~-  107 (267)
                      ++.+ +..|..|.-..||++....    .+..|.+|+-.+..    ........|..++..++..  -...++++.+.+ 
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~----tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             HHeEEEEEEecccCeEEEEEEECC----CCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            4455 4556788889999998653    36789999864321    0000012455566666543  234566666643 


Q ss_pred             -e--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 -G--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 -~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                       .  +|+||++|..+..              .|.+-..  .     +  ......|..+                 +...
T Consensus       265 ~~lylVmEy~~GGdL~~--------------~l~~~~~--l-----~--E~~a~~y~~q-----------------Il~a  304 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHY--------------HLSQHGV--F-----S--EADMRFYAAE-----------------IILG  304 (689)
T ss_dssp             SEEEEEECCCCSCBHHH--------------HHHHHCC--C-----C--HHHHHHHHHH-----------------HHHH
T ss_pred             CEEEEEEecCCCCcHHH--------------HHHhcCC--C-----C--HHHHHHHHHH-----------------HHHH
Confidence             2  8999999876531              1111110  0     0  1122333322                 2223


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ++.|-+        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       305 L~yLH~--------~gIiHRDLKPeNILld~~-G~vKL~DFGlA~  340 (689)
T 3v5w_A          305 LEHMHN--------RFVVYRDLKPANILLDEH-GHVRISDLGLAC  340 (689)
T ss_dssp             HHHHHT--------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             HHHHHH--------CCccccCCchHHeEEeCC-CCEEecccceee
Confidence            344432        349999999999999974 789999999884

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=97.89  E-value=9.2e-06  Score=68.96  Aligned_cols=139  Identities=16%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE-------------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF-------------  105 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-------------  105 (267)
                      .+..|..|....||++....    ++..+++|+........-...+|+.+++.+...++. ++++..             
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A           10 EIAVLGQGAFGQVVKARNAL----DSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVV-RYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBC-CEEEEEEECCCCCC-----
T ss_pred             hhheeccCCcEEEEEEEEcC----CCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHH-HHHHHHHhhcchhhhhccc
Confidence            35667778889999998543    357889998743221111123677777776543333 333322             


Q ss_pred             CC----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhH
Q 024452          106 GD----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTL  181 (267)
Q Consensus       106 ~~----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  181 (267)
                      .+    .+++||++|.++..       .       +.+ +.  .     ......+..+..                 .+
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~-------~-------l~~-~~--~-----~~~~~~~~~i~~-----------------qi  125 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYD-------L-------IHS-EN--L-----NQQRDEYWRLFR-----------------QI  125 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHH-------H-------HHH-SC--G-----GGCHHHHHHHHH-----------------HH
T ss_pred             ccCCceEEEEecCCCCCHHH-------h-------hhc-cc--c-----ccchHHHHHHHH-----------------HH
Confidence            11    17899998865531       1       111 00  0     000111222221                 22


Q ss_pred             HHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          182 KDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       182 ~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ...+..|.+.        .++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       126 ~~~l~~LH~~--------~i~H~dlkp~Nil~~~~-~~~kl~dfg~~~~  165 (303)
T 1zy4_A          126 LEALSYIHSQ--------GIIHRDLKPMNIFIDES-RNVKIGDFGLAKN  165 (303)
T ss_dssp             HHHHHHHHHT--------TCCCSCCCGGGEEECTT-SCEEECCCCCCSC
T ss_pred             HHHHHHHHhC--------CeecccCCHHhEEEcCC-CCEEEeeCcchhh
Confidence            2333444321        38999999999999874 6899999998753

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.88  E-value=2.4e-05  Score=67.37  Aligned_cols=77  Identities=10%  Similarity=0.048  Sum_probs=48.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC--C----eeE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D----GRV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~----~~v  110 (267)
                      -...|..|....||++....    .+..+++|+...... ...+ ..+|+.+++.+..-++ +++++.+.  +    .+|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A           13 LSDILGQGATANVFRGRHKK----TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNI-VKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTB-CCEEEEEECTTTCCEEEE
T ss_pred             EEEEecCCCCeEEEEEEECC----CCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCc-ceEEEEeecCCCceEEEE
Confidence            35556778889999998653    357899998754321 1111 1378888888864333 44555432  2    288


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      +||++|.++.
T Consensus        88 ~e~~~~~~L~   97 (319)
T 4euu_A           88 MEFCPCGSLY   97 (319)
T ss_dssp             EECCTTCBHH
T ss_pred             EeCCCCCCHH
Confidence            9999986653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=97.88  E-value=3.9e-05  Score=67.52  Aligned_cols=137  Identities=9%  Similarity=0.104  Sum_probs=75.7

Q ss_pred             EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCcccccChHHHHHHHHHHHh--------------CCCCceEEEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSS--------------QGQGPRLLGR  104 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~--------------~gl~P~v~~~  104 (267)
                      ...|..|....||++....+. ...+..+++|+........   ..|..+++.+..              +--.+++++.
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~---~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~  116 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPL---FTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGS  116 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHH---HHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEE
T ss_pred             EEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhH---HHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEee
Confidence            556688888999999764311 0124688999875543221   255555554433              1123556655


Q ss_pred             EC---C-----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccccccc
Q 024452          105 FG---D-----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEF  176 (267)
Q Consensus       105 ~~---~-----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  176 (267)
                      +.   +     .+|++|+ |.++..              .+.. +...      .. ......+..+             
T Consensus       117 ~~~~~~~~~~~~lv~e~~-g~~L~~--------------~~~~-~~~~------l~-~~~~~~i~~q-------------  160 (364)
T 3op5_A          117 GLHDKNGKSYRFMIMDRF-GSDLQK--------------IYEA-NAKR------FS-RKTVLQLSLR-------------  160 (364)
T ss_dssp             EEEEETTEEEEEEEEECE-EEEHHH--------------HHHH-TTSC------CC-HHHHHHHHHH-------------
T ss_pred             eeeccCCcceEEEEEeCC-CCCHHH--------------HHHh-ccCC------CC-HHHHHHHHHH-------------
Confidence            32   1     2789999 654431              1111 1000      11 1122222221             


Q ss_pred             chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeee--CCCCCEEEEeeccc
Q 024452          177 CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMID--EETSSITIIVSFTF  228 (267)
Q Consensus       177 ~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~--~~~~~v~lIDwE~a  228 (267)
                          +...+..|-+        ..++|+|++|.|||++  . ++.+.|+||..|
T Consensus       161 ----i~~~l~~lH~--------~~iiHrDlkp~Nill~~~~-~~~~kl~DFG~a  201 (364)
T 3op5_A          161 ----ILDILEYIHE--------HEYVHGDIKASNLLLNYKN-PDQVYLVDYGLA  201 (364)
T ss_dssp             ----HHHHHHHHHH--------TTEECCCCCGGGEEEESSC-TTCEEECCCTTC
T ss_pred             ----HHHHHHHHHH--------CCeEEecCCHHHEEEecCC-CCeEEEEECCcc
Confidence                2233344432        1599999999999998  5 467999999988

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=97.88  E-value=3.3e-05  Score=66.54  Aligned_cols=74  Identities=19%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-----CceEEEEEC--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-----GPRLLGRFG--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-----~P~v~~~~~--~~--~  109 (267)
                      -+..|..|....||++.....   .+..+.+|+............+|+.+++.+.....     .++++..+.  +.  +
T Consensus        18 ~~~~lg~G~~g~V~~~~~~~~---~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~l   94 (339)
T 1z57_A           18 IVDTLGEGAFGKVVECIDHKA---GGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICI   94 (339)
T ss_dssp             EEEEEEEETTEEEEEEEETTT---TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEE
T ss_pred             EEEEEecCCCeEEEEEEecCC---CCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEE
Confidence            456677787889999974221   35789999876432211222578999988887542     345665543  22  8


Q ss_pred             EEEeec
Q 024452          110 VEEFIH  115 (267)
Q Consensus       110 v~e~i~  115 (267)
                      |+||+.
T Consensus        95 v~e~~~  100 (339)
T 1z57_A           95 VFELLG  100 (339)
T ss_dssp             EEECCC
T ss_pred             EEcCCC
Confidence            899983

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=97.88  E-value=3.2e-05  Score=69.70  Aligned_cols=138  Identities=15%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      .+..|..|....||++....    .+..|.+|+..+..    ........|..++..+.. ....++++.+.+ .   +|
T Consensus        65 ~~~~lG~G~fG~V~~~~~~~----~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~h-p~Iv~l~~~~~~~~~~~lV  139 (412)
T 2vd5_A           65 ILKVIGRGAFSEVAVVKMKQ----TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR-RWITQLHFAFQDENYLYLV  139 (412)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCT-TTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECC----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCC-CCeeeEEEEEeeCCEEEEE
Confidence            45667788889999998643    35789999875321    111112467777766643 334555655532 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+.. ...     +  ......|..+                 +...++.|-+
T Consensus       140 mE~~~gg~L~~--------------~l~~~~-~~l-----~--~~~~~~~~~q-----------------i~~aL~~LH~  180 (412)
T 2vd5_A          140 MEYYVGGDLLT--------------LLSKFG-ERI-----P--AEMARFYLAE-----------------IVMAIDSVHR  180 (412)
T ss_dssp             ECCCCSCBHHH--------------HHHHHS-SCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EcCCCCCcHHH--------------HHHhcC-CCC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999865531              111110 000     1  1122223222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       181 --------~giiHrDLKp~NILld~~-g~vkL~DFGla~  210 (412)
T 2vd5_A          181 --------LGYVHRDIKPDNILLDRC-GHIRLADFGSCL  210 (412)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             --------CCeeecccCHHHeeecCC-CCEEEeechhhe
Confidence                    239999999999999974 689999999773

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=97.88  E-value=2.5e-05  Score=66.02  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEECCe---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~  111 (267)
                      -+..|..|....||++...... +....+.+|+.....   .. .....+|+.+++.+...+ .+++++...+.   +++
T Consensus        22 ~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~v~   99 (291)
T 1u46_A           22 LLEKLGDGSFGVVRRGEWDAPS-GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN-LIRLYGVVLTPPMKMVT   99 (291)
T ss_dssp             EEEECC----CCCEEEEEECTT-SCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSCEEEE
T ss_pred             eeeeecCCCceeEEEEEeccCC-CceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCC-cccEEEEEccCCceeeE
Confidence            4566778888999999753211 112357888875432   11 111246777777774323 35566665432   889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..          .+    .+- ....      . ...+..+..                 .+...+..|.+ 
T Consensus       100 e~~~~~~L~~----------~l----~~~-~~~~------~-~~~~~~~~~-----------------~i~~~l~~lH~-  139 (291)
T 1u46_A          100 ELAPLGSLLD----------RL----RKH-QGHF------L-LGTLSRYAV-----------------QVAEGMGYLES-  139 (291)
T ss_dssp             ECCTTCBHHH----------HH----HHH-GGGS------C-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             ecccCCCHHH----------HH----Hhc-cCCc------C-HHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            9998765431          11    100 0000      0 111222221                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       140 -------~~i~H~dikp~Nili~~~-~~~kl~Dfg~~~  169 (291)
T 1u46_A          140 -------KRFIHRDLAARNLLLATR-DLVKIGDFGLMR  169 (291)
T ss_dssp             -------TTEECSCCCGGGEEEEET-TEEEECCCTTCE
T ss_pred             -------CCcccCCCchheEEEcCC-CCEEEccccccc
Confidence                   149999999999999874 679999998764

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=97.88  E-value=9.9e-05  Score=65.40  Aligned_cols=58  Identities=7%  Similarity=0.007  Sum_probs=37.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLG  103 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~  103 (267)
                      .-...|..|....||++....    .+..+.+|+...+.. ..  .+|+++++.+..-.+ .+++.
T Consensus        10 ~~~~~lG~G~fg~V~~a~~~~----~~~~vAiK~~~~~~~-~~--~~E~~il~~l~hpnI-v~l~~   67 (383)
T 3eb0_A           10 SLGKTLGTGSFGIVCEVFDIE----SGKRFALKKVLQDPR-YK--NRELDIMKVLDHVNI-IKLVD   67 (383)
T ss_dssp             EEEEEEECC-CEEEEEEEETT----TCCEEEEEEEECCTT-SC--CHHHHHHTTCCCTTB-CCEEE
T ss_pred             EEEEEEEeccCEEEEEEEECC----CCCEEEEEEEecCcc-hH--HHHHHHHHHcCCCCc-cchhh
Confidence            346677888889999997543    357899997654432 22  278998888754333 33444

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.88  E-value=3.5e-05  Score=68.07  Aligned_cols=138  Identities=11%  Similarity=0.069  Sum_probs=80.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      -...|..|....||++....    .+..+.+|+......   ......+|+.+++.+..-+ .++++..+.+  .  +|+
T Consensus        33 ~~~~lG~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           33 VKEELGKGAFSVVRRCVHKT----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN-IVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             EeeEEecCCCeEEEEEEECC----CCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEeCCEEEEEE
Confidence            35567778889999997543    357899998754321   1111247888888885333 3456665532  2  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+...          +       ....    . .. ......+..                 .+...+..+-+.
T Consensus       108 e~~~gg~L~~~----------l-------~~~~----~-~~-~~~~~~~~~-----------------qi~~al~~lH~~  147 (362)
T 2bdw_A          108 DLVTGGELFED----------I-------VARE----F-YS-EADASHCIQ-----------------QILESIAYCHSN  147 (362)
T ss_dssp             CCCCSCBHHHH----------H-------TTCS----C-CC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             ecCCCCCHHHH----------H-------HHcC----C-CC-HHHHHHHHH-----------------HHHHHHHHHHHC
Confidence            99998655210          0       0100    0 01 111222222                 122333444321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~  229 (267)
                              .++|+|++|.|||++.++  ..+.|+||..+.
T Consensus       148 --------~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~  179 (362)
T 2bdw_A          148 --------GIVHRNLKPENLLLASKAKGAAVKLADFGLAI  179 (362)
T ss_dssp             --------TCBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred             --------CeEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence                    389999999999998532  358999999874

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=97.88  E-value=2.1e-05  Score=71.67  Aligned_cols=138  Identities=9%  Similarity=0.067  Sum_probs=79.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~  111 (267)
                      -...|..|....||++....    .+..+.+|+.......   .....+|+.+++.+..-++ .+++..+.+ +   +|+
T Consensus        15 i~~~LG~G~fg~V~~~~~~~----~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnI-v~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           15 LFEELGKGAFSVVRRCVKVL----AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNI-VRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             EEEEEEEC--CEEEEEEETT----TTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTB-CCEEEEEECSSEEEEEE
T ss_pred             EEEEeccCCCeEEEEEEECC----CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCC-CeEEEEEEECCEEEEEE
Confidence            35667888889999997543    3578888876543211   1112478888888854333 445665532 2   889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..          .+.       ...   .  .. ......+..                 .+...+..+-+ 
T Consensus        90 E~~~gg~L~~----------~i~-------~~~---~--~~-e~~~~~i~~-----------------qil~aL~~lH~-  128 (444)
T 3soa_A           90 DLVTGGELFE----------DIV-------ARE---Y--YS-EADASHCIQ-----------------QILEAVLHCHQ-  128 (444)
T ss_dssp             CCCBCCBHHH----------HHH-------HCS---C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EeCCCCCHHH----------HHH-------HcC---C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9999865521          110       000   0  01 111222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++.+  ++.+.|+||..|.
T Consensus       129 -------~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~  161 (444)
T 3soa_A          129 -------MGVVHRNLKPENLLLASKLKGAAVKLADFGLAI  161 (444)
T ss_dssp             -------TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred             -------CCccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence                   138999999999999842  3579999999873

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=97.88  E-value=1.5e-05  Score=67.32  Aligned_cols=137  Identities=14%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -...|..|....||++....    .+..+.+|+......   ... ...+|+.+++.+...+ .+++++.+.+.    ++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A           13 IGRPLGKGKFGNVYLAREKQ----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN-ILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EeeEEecCCCeEEEEEEEcc----CCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCC-CcchhheEecCCEEEEE
Confidence            35667888889999997643    356888998643210   000 1135666666554323 35566665422    78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..              .+.+...        .. ......+..                 .+...+..|.+
T Consensus        88 ~e~~~~~~l~~--------------~l~~~~~--------~~-~~~~~~~~~-----------------qi~~~l~~LH~  127 (279)
T 3fdn_A           88 LEYAPLGTVYR--------------ELQKLSK--------FD-EQRTATYIT-----------------ELANALSYCHS  127 (279)
T ss_dssp             ECCCTTEEHHH--------------HHHHHSS--------CC-HHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EecCCCCcHHH--------------HHHhcCC--------CC-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            99988755431              1111110        00 011222221                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+||+++.+ +.+.|+||+.+.
T Consensus       128 --------~~i~H~dlkp~Nili~~~-~~~~l~Dfg~~~  157 (279)
T 3fdn_A          128 --------KRVIHRDIKPENLLLGSA-GELKIADFGWSV  157 (279)
T ss_dssp             --------TTCEECCCCGGGEEECTT-SCEEECSCCEES
T ss_pred             --------CCEecccCChHhEEEcCC-CCEEEEeccccc
Confidence                    248999999999999874 689999999764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=97.87  E-value=4.3e-05  Score=67.82  Aligned_cols=141  Identities=9%  Similarity=0.055  Sum_probs=81.0

Q ss_pred             CcEE-EEEecCc--eeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEEC--C
Q 024452           36 DALQ-VIPLKGA--MTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D  107 (267)
Q Consensus        36 ~~~~-i~~l~~G--~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~  107 (267)
                      +..+ +..|..|  ....||++....    .+..+.+|+.....  ..... ..+|+.+++.+..-++. ++++.+.  +
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~~~~~~~~~~   99 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKP----TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIV-PYRATFIADN   99 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBC-CEEEEEEETT
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcC----CCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCC-cEeEEEEECC
Confidence            3444 5556677  678999998653    35789999875432  11111 13688888888644443 3555443  2


Q ss_pred             e--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 G--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 ~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                      .  +|+||++|.++..              .+..-....      .. ...+..+..                 .+...+
T Consensus       100 ~~~lv~e~~~~~~L~~--------------~l~~~~~~~------~~-~~~~~~~~~-----------------qi~~~l  141 (389)
T 3gni_B          100 ELWVVTSFMAYGSAKD--------------LICTHFMDG------MN-ELAIAYILQ-----------------GVLKAL  141 (389)
T ss_dssp             EEEEEEECCTTCBHHH--------------HHHHTCTTC------CC-HHHHHHHHH-----------------HHHHHH
T ss_pred             EEEEEEEccCCCCHHH--------------HHhhhcccC------CC-HHHHHHHHH-----------------HHHHHH
Confidence            2  8899999865531              111100000      01 112222222                 122333


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      ..|-+        ..++|+|++|.|||++.+ +.+.|+||..+
T Consensus       142 ~~LH~--------~~ivHrDlkp~NIll~~~-~~~kl~dfg~~  175 (389)
T 3gni_B          142 DYIHH--------MGYVHRSVKASHILISVD-GKVYLSGLRSN  175 (389)
T ss_dssp             HHHHH--------TTEECCCCSGGGEEECTT-CCEEECCGGGC
T ss_pred             HHHHh--------CCeecCCCCHHHEEEcCC-CCEEEcccccc
Confidence            44432        138999999999999874 68999999654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=97.86  E-value=6.4e-05  Score=64.92  Aligned_cols=140  Identities=16%  Similarity=0.053  Sum_probs=80.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc----c---cChHHHHHHHHHHHh-CCCCceEEEEECC--
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV----F---FNRDDEIRTFECMSS-QGQGPRLLGRFGD--  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~----~---~dr~~E~~~~~~l~~-~gl~P~v~~~~~~--  107 (267)
                      .-...|..|....||++....    ++..+++|+.......    .   .....|+.+++.+.. +.-.++++..+.+  
T Consensus        46 ~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~  121 (320)
T 3a99_A           46 QVGPLLGSGGFGSVYSGIRVS----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD  121 (320)
T ss_dssp             EEEEECSSSSSCEEEEEEETT----TTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             EEEEEEeeCCCeEEEEEEECC----CCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence            345666888889999997543    3578999987543110    0   111379999998875 3334566666542  


Q ss_pred             e--eEEEeecC-CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 G--RVEEFIHA-RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ~--~v~e~i~G-~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      .  +++++.++ .++.              ..+.+-.  .      .. ......+..                 .+...
T Consensus       122 ~~~lv~e~~~~~~~L~--------------~~l~~~~--~------l~-~~~~~~i~~-----------------qi~~~  161 (320)
T 3a99_A          122 SFVLILERPEPVQDLF--------------DFITERG--A------LQ-EELARSFFW-----------------QVLEA  161 (320)
T ss_dssp             EEEEEEECCSSEEEHH--------------HHHHHHC--S------CC-HHHHHHHHH-----------------HHHHH
T ss_pred             cEEEEEEcCCCCccHH--------------HHHhccC--C------CC-HHHHHHHHH-----------------HHHHH
Confidence            2  77888764 3221              1111100  0      00 111222221                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..|-+        ..++|+|++|.||+++.+++.+.|+||+.+.
T Consensus       162 L~~LH~--------~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          162 VRHCHN--------CGVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             HHHHHH--------TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             HHHHHH--------CCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            334432        2399999999999998434689999999764

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=97.86  E-value=1.8e-05  Score=68.58  Aligned_cols=138  Identities=12%  Similarity=0.060  Sum_probs=79.5

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      ..+..|..|....||++....    .+..+++|+.......  .....+|+.+++.+...++ ++++..+.+    .+|+
T Consensus         5 ~~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            5 IKLDKLGEGTYATVYKGKSKL----TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI-VTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TCCEEEEEEECC------CCCCCCCHHHHSCCCCTTB-CCEEEEEECSSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEEECC----CCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCC-CeeeeEEeeCCEEEEEe
Confidence            356778888889999998643    3578889977543211  1111368888877754333 445655432    2889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++| .+.              ..+.+   ...   . .+ ...+..+..                 .+...+..|-+ 
T Consensus        80 e~~~~-~l~--------------~~~~~---~~~---~-~~-~~~~~~~~~-----------------qi~~aL~~LH~-  118 (324)
T 3mtl_A           80 EYLDK-DLK--------------QYLDD---CGN---I-IN-MHNVKLFLF-----------------QLLRGLAYCHR-  118 (324)
T ss_dssp             ECCSE-EHH--------------HHHHH---TTT---C-CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             ccccc-CHH--------------HHHHh---cCC---C-CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            99886 211              00110   000   0 01 112222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       119 -------~~ivH~Dikp~NIl~~~~-~~~kl~Dfg~a~  148 (324)
T 3mtl_A          119 -------QKVLHRDLKPQNLLINER-GELKLADFGLAR  148 (324)
T ss_dssp             -------TTEEESSCCGGGEEECTT-CCEEECSSSEEE
T ss_pred             -------CCccCCCcCHHHEEECCC-CCEEEccCcccc
Confidence                   139999999999999874 689999999774

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=97.86  E-value=2.7e-05  Score=66.19  Aligned_cols=137  Identities=16%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      ....|..|....||++....    .+..+.+|+......   ...+ ..+|+.+++.+...++ +++++...+  .  ++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDAD----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHV-VGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             EEEEEeecCCEEEEEEEECC----CCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCE-eeeeeeeccCCEEEEE
Confidence            45666778788999998643    357788888643210   0111 1356777766643333 446665532  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ..       .+ +. ..      . ...+..+..                 .+...+..|.+
T Consensus        94 ~e~~~~~~L~~-------~~-------~~-~~-~~------~-~~~~~~i~~-----------------qi~~~l~~lH~  133 (294)
T 2rku_A           94 LELCRRRSLLE-------LH-------KR-RK-AL------T-EPEARYYLR-----------------QIVLGCQYLHR  133 (294)
T ss_dssp             EECCTTCBHHH-------HH-------HH-HC-SC------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCCHHH-------HH-------Hh-cC-CC------C-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865531       11       00 00 00      1 111222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       134 --------~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~~  163 (294)
T 2rku_A          134 --------NRVIHRDLKLGNLFLNED-LEVKIGDFGLAT  163 (294)
T ss_dssp             --------TTEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             --------CCccccCCChHhEEEcCC-CCEEEEeccCce
Confidence                    148999999999999974 689999999874

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=97.86  E-value=1.3e-05  Score=69.47  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ...++|+|++|.|||++++ +.+.|+||..|.
T Consensus       138 ~~~ivH~Dikp~Nill~~~-~~~kL~DFG~a~  168 (336)
T 3g2f_A          138 KPAISHRDLNSRNVLVKND-GTCVISDFGLSM  168 (336)
T ss_dssp             BCCEECSSCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             ccceeecccccceEEEcCC-CcEEEeecccee
Confidence            3479999999999999974 689999999884

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=97.86  E-value=4.8e-05  Score=67.45  Aligned_cols=142  Identities=18%  Similarity=0.133  Sum_probs=80.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-----CceEEEEEC--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-----GPRLLGRFG--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-----~P~v~~~~~--~~--~  109 (267)
                      -...|..|....||++....    .+..+.+|+........-....|..+++.+..+..     ..+++..+.  +.  +
T Consensus        58 ~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~l  133 (382)
T 2vx3_A           58 IDSLIGKGSFGQVVKAYDRV----EQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCL  133 (382)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEE
T ss_pred             EEEEEeecCCEEEEEEEEcC----CCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEE
Confidence            35567778889999997543    35789999876442211222468888888876542     344555442  22  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++| .+.              ..+..   ...  .. .. ......+..+                 +...+..|-
T Consensus       134 v~e~~~~-~L~--------------~~l~~---~~~--~~-~~-~~~~~~i~~q-----------------i~~al~~lH  174 (382)
T 2vx3_A          134 VFEMLSY-NLY--------------DLLRN---TNF--RG-VS-LNLTRKFAQQ-----------------MCTALLFLA  174 (382)
T ss_dssp             EEECCCC-BHH--------------HHHHH---TTT--SC-CC-HHHHHHHHHH-----------------HHHHHHHHT
T ss_pred             EEecCCC-CHH--------------HHHhh---cCc--CC-CC-HHHHHHHHHH-----------------HHHHHHHhc
Confidence            8999876 321              11111   000  00 01 1112222211                 122222221


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~  229 (267)
                            .....++|+|++|.|||++.+ .+.+.|+||..|.
T Consensus       175 ------~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~  209 (382)
T 2vx3_A          175 ------TPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC  209 (382)
T ss_dssp             ------STTTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             ------cCCCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence                  123469999999999999642 3568999999773

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=97.86  E-value=1.7e-05  Score=70.31  Aligned_cols=141  Identities=14%  Similarity=0.063  Sum_probs=77.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~  113 (267)
                      ...|..|....||++..... +..+..+.+|+.......  ..+-.+|+.+++.+... -.+++++.+.+.    +|+||
T Consensus        50 ~~~lG~G~fg~Vy~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~-niv~~~~~~~~~~~~~lv~e~  127 (373)
T 2qol_A           50 DKVVGAGEFGEVCSGRLKLP-SKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP-NIIRLEGVVTKSKPVMIVTEY  127 (373)
T ss_dssp             CEEEEECSSSEEEEC-CBCT-TSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCT-TBCCEEEEECSSSSCEEEEEC
T ss_pred             eeEEeeCCCeEEEEEEEecC-CCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCC-CCCeEEEEEeeCCceEEEEeC
Confidence            45667777889999875321 113467899987543211  11113677777666432 345667766432    89999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       .       +   +....+    .. ...+..+..                 .+...+..|-+.  
T Consensus       128 ~~~~sL~~-------~-------l---~~~~~~----~~-~~~~~~i~~-----------------qi~~aL~~LH~~--  166 (373)
T 2qol_A          128 MENGSLDS-------F-------L---RKHDAQ----FT-VIQLVGMLR-----------------GIASGMKYLSDM--  166 (373)
T ss_dssp             CTTCBHHH-------H-------H---HTTTTC----SC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             CCCCcHHH-------H-------H---HhCCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHHC--
Confidence            99876532       1       1   111100    11 111222221                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                            .++|+|++|.|||++++ +.+.|+||+.+..
T Consensus       167 ------~ivH~Dlkp~NIll~~~-~~~kl~Dfg~a~~  196 (373)
T 2qol_A          167 ------GYVHRDLAARNILINSN-LVCKVSDFGLGRV  196 (373)
T ss_dssp             ------TCCCSCCCGGGEEECTT-CCEEECCC-----
T ss_pred             ------CeeCCCCCcceEEEcCC-CCEEECcCccccc
Confidence                  38999999999999874 6899999998753

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=97.86  E-value=6.6e-05  Score=65.51  Aligned_cols=136  Identities=10%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEEC---------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFG---------  106 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~---------  106 (267)
                      .+..|..|....||++....    ++..+++|+.......   .....+|+.+++.+...++ ++++....         
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           21 KLAKIGQGTFGEVFKARHRK----TGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV-VNLIEICRTKASPYNRC   95 (351)
T ss_dssp             EEEECSSCSTTSEEEEEETT----TCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTB-CCEEEEEEEC-------
T ss_pred             EEEEEecCCCcEEEEEEECC----CCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCc-ccHhheeeccccccccC
Confidence            46677888889999998643    3578999987443211   1112478888888864443 33444321         


Q ss_pred             C---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          107 D---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       107 ~---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      +   .+|+||++|...               ..+.   ....+    .. ...+..+..                 .+..
T Consensus        96 ~~~~~lv~e~~~~~l~---------------~~l~---~~~~~----~~-~~~~~~i~~-----------------qi~~  135 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLA---------------GLLS---NVLVK----FT-LSEIKRVMQ-----------------MLLN  135 (351)
T ss_dssp             -CEEEEEEECCSEEHH---------------HHHH---CTTSC----CC-HHHHHHHHH-----------------HHHH
T ss_pred             CceEEEEEeccCCCHH---------------HHHh---hccCC----CC-HHHHHHHHH-----------------HHHH
Confidence            1   178999886211               1111   10000    11 112222222                 1223


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      .+..|-+        ..++|+|++|.|||++.+ +.+.|+||+.|
T Consensus       136 ~l~~LH~--------~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~a  171 (351)
T 3mi9_A          136 GLYYIHR--------NKILHRDMKAANVLITRD-GVLKLADFGLA  171 (351)
T ss_dssp             HHHHHHH--------TTEECCCCSGGGEEECTT-SCEEECCCTTC
T ss_pred             HHHHHHH--------CCeeCCCCCHHHEEEcCC-CCEEEccchhc
Confidence            3344432        139999999999999874 68999999876

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.86  E-value=2.9e-05  Score=66.58  Aligned_cols=149  Identities=16%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEEC----C
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFG----D  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~----~  107 (267)
                      +... ...|..|....||++..... .+.+..+++|+......  ... ...+|+.+++.+..-++. ++++...    .
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~  111 (313)
T 3brb_A           34 NLLILGKILGEGEFGSVMEGNLKQE-DGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI-RLLGVCIEMSSQ  111 (313)
T ss_dssp             GGEEEEEEEEC-CCCCEEEEEEECT-TSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBC-CCCEEEEC----
T ss_pred             HHeeeccceeecCCeEEEEEEEecc-CCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCee-eeeEEEeecccc
Confidence            3444 45567888899999875421 11245789998754321  111 123677777777543333 3333321    1


Q ss_pred             -----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHH
Q 024452          108 -----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLK  182 (267)
Q Consensus       108 -----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  182 (267)
                           .++++|++|.++...              +. .+....... ... ...+..+..                 .+.
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~--------------l~-~~~~~~~~~-~~~-~~~~~~i~~-----------------qi~  157 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTY--------------LL-YSRLETGPK-HIP-LQTLLKFMV-----------------DIA  157 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHH--------------HH-HTTBTTSCC-CCC-HHHHHHHHH-----------------HHH
T ss_pred             CCcccEEEEecccCCCHHHH--------------HH-HhhhhcCCc-cCC-HHHHHHHHH-----------------HHH
Confidence                 378999988665421              10 011111000 011 112222222                 122


Q ss_pred             HHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          183 DEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       183 ~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ..+..|-+        ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       158 ~aL~~LH~--------~~ivH~dikp~NIli~~~-~~~kl~Dfg~~~  195 (313)
T 3brb_A          158 LGMEYLSN--------RNFLHRDLAARNCMLRDD-MTVCVADFGLSK  195 (313)
T ss_dssp             HHHHHHHT--------TTCCCCCCSGGGEEECTT-SCEEECSCSCC-
T ss_pred             HHHHHHHh--------CCcccCCCCcceEEEcCC-CcEEEeecCcce
Confidence            23333332        138999999999999874 689999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=97.86  E-value=5.6e-05  Score=69.55  Aligned_cols=137  Identities=10%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ...|..|....||++....    .+..+.+|+...... ......|..+++.+......|.+..+..  +.  +|++|+ 
T Consensus        12 ~~~LG~G~fG~Vy~a~~~~----~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-   85 (483)
T 3sv0_A           12 GRKIGSGSFGEIYLGTNIQ----TNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-   85 (483)
T ss_dssp             CCCCEECSSCEEEEEEETT----TCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             EEEEeeCCCEEEEEEEECC----CCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-
Confidence            3456777788999998543    357899998654321 1123489999999987666666665543  22  789998 


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+..              .+.....   +    .. ...+..+..                 .+...+..|-+.    
T Consensus        86 g~sL~~--------------ll~~~~~---~----l~-~~~~~~i~~-----------------qi~~aL~yLH~~----  122 (483)
T 3sv0_A           86 GPSLED--------------LFNFCSR---K----LS-LKTVLMLAD-----------------QMINRVEFVHSK----  122 (483)
T ss_dssp             CCBHHH--------------HHHHTTT---C----CC-HHHHHHHHH-----------------HHHHHHHHHHHT----
T ss_pred             CCCHHH--------------HHHhhcC---C----CC-HHHHHHHHH-----------------HHHHHHHHHHHC----
Confidence            544421              1111100   0    11 112222222                 222333444321    


Q ss_pred             CCcEEEEccCCCCCCeeee--CCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMID--EETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~--~~~~~v~lIDwE~a~  229 (267)
                          .++|+|++|.|||+.  .+.+.+.|+||..|.
T Consensus       123 ----gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~  154 (483)
T 3sv0_A          123 ----SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK  154 (483)
T ss_dssp             ----TEECCCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             ----CEeecccCcceEEEecCCCCCeEEEEeCCcce
Confidence                399999999999994  124679999999874

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.85  E-value=6.6e-06  Score=70.77  Aligned_cols=137  Identities=16%  Similarity=0.101  Sum_probs=75.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccC-hHHHHHHHHHHHhCCCCceEEEEEC----C---
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFN-RDDEIRTFECMSSQGQGPRLLGRFG----D---  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~d-r~~E~~~~~~l~~~gl~P~v~~~~~----~---  107 (267)
                      -...|..|....||++....    .+..+.+|+.......   ... ..+|+.+++.+..-+ .++++..+.    .   
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           16 LGEILGFGGMSEVHLARDLR----DHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA-IVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTT-BCCEEEEEEEEETTEEE
T ss_pred             EEEEEccCCCEEEEEEEECC----CCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCC-cceEEEeeeccCCCCcc
Confidence            45667788889999998543    3578999987653211   110 123444433332222 244555432    2   


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .+|+||++|.++..       ...       . +.   +    .. ......+..                 .+...+.
T Consensus        91 ~~lv~e~~~g~~L~~-------~l~-------~-~~---~----~~-~~~~~~~~~-----------------qi~~~l~  130 (311)
T 3ork_A           91 PYIVMEYVDGVTLRD-------IVH-------T-EG---P----MT-PKRAIEVIA-----------------DACQALN  130 (311)
T ss_dssp             EEEEEECCCEEEHHH-------HHH-------H-HC---S----CC-HHHHHHHHH-----------------HHHHHHH
T ss_pred             cEEEEecCCCCCHHH-------HHH-------h-cC---C----CC-HHHHHHHHH-----------------HHHHHHH
Confidence             38899999865532       110       0 00   0    01 111222222                 1222333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+-+        ..++|+|++|.||+++.+ +.+.|+||..+.
T Consensus       131 ~lH~--------~~ivH~dlkp~Nil~~~~-~~~kl~Dfg~a~  164 (311)
T 3ork_A          131 FSHQ--------NGIIHRDVKPANIMISAT-NAVKVMDFGIAR  164 (311)
T ss_dssp             HHHH--------TTCCCCCCCGGGEEEETT-SCEEECCCSCC-
T ss_pred             HHHH--------CCCCcCCCCHHHEEEcCC-CCEEEeeccCcc
Confidence            4432        138999999999999974 689999999874

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=97.85  E-value=3.7e-05  Score=70.87  Aligned_cols=139  Identities=18%  Similarity=0.156  Sum_probs=78.8

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-------------ccc-ChHHHHHHHHHHHhCCCCceEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-------------VFF-NRDDEIRTFECMSSQGQGPRLLG  103 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-------------~~~-dr~~E~~~~~~l~~~gl~P~v~~  103 (267)
                      ..+..|..|....||++....    .+..+.+|+......             ... ...+|+.+++.+.. .-.++++.
T Consensus        39 ~~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-pniv~~~~  113 (504)
T 3q5i_A           39 FKVRKLGSGAYGEVLLCKEKN----GHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDH-PNIIKLFD  113 (504)
T ss_dssp             EEEEEEEC--CEEEEEEEETT----TCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCC-TTBCCEEE
T ss_pred             EEEeEecccCCeEEEEEEECC----CCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCC-CCCCeEEE
Confidence            346778888899999998643    357888887643210             000 11367788877743 23355666


Q ss_pred             EECCe----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchh
Q 024452          104 RFGDG----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLY  179 (267)
Q Consensus       104 ~~~~~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  179 (267)
                      .+.+.    +|+||++|..+..          .+.    +-..        .+ ......+..                 
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~----------~l~----~~~~--------~~-~~~~~~i~~-----------------  153 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFE----------QII----NRHK--------FD-ECDAANIMK-----------------  153 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHH----------HHH----HHSC--------CC-HHHHHHHHH-----------------
T ss_pred             EEEcCCEEEEEEecCCCCcHHH----------HHH----HcCC--------CC-HHHHHHHHH-----------------
Confidence            65432    8899999865421          110    0000        01 111222222                 


Q ss_pred             hHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeecccC
Q 024452          180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFL  229 (267)
Q Consensus       180 ~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~  229 (267)
                      .+...+..|-+        ..++|+|++|.|||++.++.  .+.|+||..|.
T Consensus       154 qi~~~l~~lH~--------~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  197 (504)
T 3q5i_A          154 QILSGICYLHK--------HNIVHRDIKPENILLENKNSLLNIKIVDFGLSS  197 (504)
T ss_dssp             HHHHHHHHHHH--------TTEECSCCSGGGEEESSTTCCSSEEECCCTTCE
T ss_pred             HHHHHHHHHHH--------CCeEeCCCcHHHEEEecCCCCccEEEEECCCCE
Confidence            22233344432        13999999999999986432  58999999874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=97.85  E-value=2.3e-05  Score=70.04  Aligned_cols=136  Identities=15%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE---C---C----ee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF---G---D----GR  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~---~---~----~~  109 (267)
                      +..|..|....||++....     .+.+++|...... ...  .+|.++++.+...++. +++..+   .   +    .+
T Consensus        45 ~~~lG~G~~g~V~~a~~~~-----~~~~aikk~~~~~-~~~--~~E~~il~~l~h~niv-~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           45 CKVIGNGSFGVVFQAKLVE-----SDEVAIKKVLQDK-RFK--NRELQIMRIVKHPNVV-DLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEETTEEEEEEEETT-----TEEEEEEEEECCT-TSC--CHHHHHHHTCCCTTBC-CEEEEEEEESSSSSCEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECC-----CCeEEEEEEecCc-chH--HHHHHHHHhCCCCCcc-eEEEEEEecCCCCCceEEEE
Confidence            4456777788999998643     2346655543332 222  2799999888654443 344433   1   1    16


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|...            .......+...   .    . ....+..|..+                 +...+..|-
T Consensus       116 v~e~~~~~l~------------~~~~~~~~~~~---~----~-~~~~~~~~~~q-----------------i~~aL~~LH  158 (394)
T 4e7w_A          116 VLEYVPETVY------------RASRHYAKLKQ---T----M-PMLLIKLYMYQ-----------------LLRSLAYIH  158 (394)
T ss_dssp             EEECCSEEHH------------HHHHHHHHTTS---C----C-CHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EeeccCccHH------------HHHHHHHhhcC---C----C-CHHHHHHHHHH-----------------HHHHHHHHH
Confidence            8899886211            11111111111   0    0 01122223222                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+++.+.|+||..|.
T Consensus       159 ~--------~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          159 S--------IGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             H--------TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             H--------CCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            2        2389999999999998435679999999873

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.85  E-value=1.6e-05  Score=66.96  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=77.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE-C-C---eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF-G-D---GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~-~---~~v~e  112 (267)
                      .-...|..|....||++...      +..+++|+...... .-...+|+.+++.+...++ .++++.. . +   .++++
T Consensus        24 ~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~-~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~lv~e   95 (278)
T 1byg_A           24 KLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDAT-AQAFLAEASVMTQLRHSNL-VQLLGVIVEEKGGLYIVTE   95 (278)
T ss_dssp             EEEEEEEECSSCEEEEEEET------TEEEEEEECCCCC---HHHHHTHHHHTTCCCTTB-CCEEEEECCC--CCEEEEC
T ss_pred             eEEeEEecCCCceEEEEEEc------CCEEEEEEecchhH-HHHHHHHHHHHHhCCCCCE-eeEEEEEEcCCCceEEEEe
Confidence            34566677888899999753      47899998765431 1111367887777754333 3445542 2 2   28899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..       ....-.       ....      + ...+..+..                 .+...+..+.+  
T Consensus        96 ~~~~~~L~~-------~l~~~~-------~~~~------~-~~~~~~~~~-----------------~i~~~l~~lH~--  135 (278)
T 1byg_A           96 YMAKGSLVD-------YLRSRG-------RSVL------G-GDCLLKFSL-----------------DVCEAMEYLEG--  135 (278)
T ss_dssp             CCTTEEHHH-------HHHHHH-------HHHC------C-HHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             cCCCCCHHH-------HHHhcc-------cccC------C-HHHHHHHHH-----------------HHHHHHHHHHh--
Confidence            998865532       111000       0000      0 011111211                 12233334432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       136 ------~~i~H~dlkp~Nil~~~~-~~~~l~Dfg~~~  165 (278)
T 1byg_A          136 ------NNFVHRDLAARNVLVSED-NVAKVSDFGLTK  165 (278)
T ss_dssp             ------TTCCCSCCSGGGEEECTT-SCEEECCCCC--
T ss_pred             ------CCccccCCCcceEEEeCC-CcEEEeeccccc
Confidence                  138999999999999874 689999999774

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.85  E-value=6.8e-05  Score=70.47  Aligned_cols=138  Identities=17%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i  114 (267)
                      ...|..|.-..||++....    .+..|.+|+-...... .....+|+.+++.|..-. ..+++..+.+.    +++||+
T Consensus       162 ~~~lG~G~fg~V~~~~~~~----tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          162 HEELGTGAFGVVHRVTERA----TGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT-LVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTT-BCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEeeccCeEEEEEEECC----CCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEeec
Confidence            4567778889999998643    3578888865433211 111247899988885433 34566665432    889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..              .|.   ..   ... . .......|..+                 +...++.|-+    
T Consensus       237 ~gg~L~~--------------~i~---~~---~~~-l-~e~~~~~~~~q-----------------i~~al~ylH~----  273 (573)
T 3uto_A          237 SGGELFE--------------KVA---DE---HNK-M-SEDEAVEYMRQ-----------------VCKGLCHMHE----  273 (573)
T ss_dssp             CCCBHHH--------------HHT---CT---TSC-E-EHHHHHHHHHH-----------------HHHHHHHHHH----
T ss_pred             CCCcHHH--------------HHH---Hh---CCC-C-CHHHHHHHHHH-----------------HHHHHHHHHH----
Confidence            9865421              111   00   000 1 11223333332                 2223334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||++.+ .+.+.|+||..|.
T Consensus       274 ----~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~  305 (573)
T 3uto_A          274 ----NNYVHLDLKPENIMFTTKRSNELKLIDFGLTA  305 (573)
T ss_dssp             ----TTEECCCCCGGGEEESSSSCCCEEECCCSSCE
T ss_pred             ----CCeeeccCChhhccccCCCCCCEEEeecccee
Confidence                249999999999999753 2579999999885

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.84  E-value=0.00011  Score=66.13  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=77.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE----C--Ce----e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF----G--DG----R  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~----~--~~----~  109 (267)
                      ...|..|....||++....    .+..+.+|....+.. ..  .+|+++++.+...++.. +++.+    .  +.    +
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~----~~~~vaiK~~~~~~~-~~--~~E~~il~~l~hpniv~-l~~~~~~~~~~~~~~~~~l  130 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCD----SGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVR-LRYFFYSSGEKKDEVYLNL  130 (420)
T ss_dssp             EEEEEECSSEEEEEEEETT----TCCEEEEEEEECCTT-SC--CHHHHHHHTCCCTTBCC-EEEEEEEEETTTTEEEEEE
T ss_pred             eeEEeeCCCEEEEEEEECC----CCcEEEEEEecccch-hH--HHHHHHHHHcCCCCccc-eeeEEeccCCCCcceeEEe
Confidence            4556778788999998643    357888987654432 22  27999998886545443 33322    1  11    6


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |++|++|. +           ..+.+...   ....+    .. ...+..+..                 .+...+..|-
T Consensus       131 v~e~~~~~-l-----------~~~~~~~~---~~~~~----l~-~~~~~~~~~-----------------qi~~aL~~LH  173 (420)
T 1j1b_A          131 VLDYVPET-V-----------YRVARHYS---RAKQT----LP-VIYVKLYMY-----------------QLFRSLAYIH  173 (420)
T ss_dssp             EEECCCEE-H-----------HHHHHHHH---HTTCC----CC-HHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             ehhccccc-H-----------HHHHHHHh---hccCC----CC-HHHHHHHHH-----------------HHHHHHHHHH
Confidence            78888751 1           11111111   11110    00 111222222                 1222333443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+++.+.|+||..|.
T Consensus       174 ~--------~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          174 S--------FGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             T--------TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             H--------CCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            2        2499999999999999654567999999874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=97.84  E-value=6.4e-05  Score=67.94  Aligned_cols=138  Identities=17%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-----CceEEEEEC--Ce--e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-----GPRLLGRFG--DG--R  109 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-----~P~v~~~~~--~~--~  109 (267)
                      -+..|..|....||++....    .+..+.+|+.............|+.+++.+.....     ..+++..+.  +.  +
T Consensus       101 ~~~~LG~G~fg~V~~a~~~~----~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~l  176 (429)
T 3kvw_A          101 VLKVIGKGSFGQVVKAYDHK----VHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICM  176 (429)
T ss_dssp             EEEEEEESSSEEEEEEEETT----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEE
T ss_pred             EEEEcccCccEEEEEEEECC----CCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEE
Confidence            35667788889999997543    35789999876543211222478899998887531     234555443  22  7


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      +++|++| .+.              ..+.+-   ..  .. .. ...+..+..+                 +...+..|-
T Consensus       177 v~e~~~~-~L~--------------~~l~~~---~~--~~-~~-~~~~~~i~~q-----------------i~~aL~~LH  217 (429)
T 3kvw_A          177 TFELLSM-NLY--------------ELIKKN---KF--QG-FS-LPLVRKFAHS-----------------ILQCLDALH  217 (429)
T ss_dssp             EECCCCC-BHH--------------HHHHHT---TT--CC-CC-HHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEeccCC-CHH--------------HHHHhc---cC--CC-CC-HHHHHHHHHH-----------------HHHHHHHHH
Confidence            7888765 111              111110   00  00 01 1122222222                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCC--EEEEeeccc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSS--ITIIVSFTF  228 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~--v~lIDwE~a  228 (267)
                      +.        .++|+|++|.|||++.+ +.  +.|+||..|
T Consensus       218 ~~--------~ivHrDlKp~NILl~~~-~~~~vkL~DFG~a  249 (429)
T 3kvw_A          218 KN--------RIIHCDLKPENILLKQQ-GRSGIKVIDFGSS  249 (429)
T ss_dssp             HH--------TEECSCCSGGGEEESST-TSCCEEECCCTTC
T ss_pred             HC--------CeecCCCCHHHeEEccC-CCcceEEeecccc
Confidence            22        49999999999999975 44  899999977

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=97.84  E-value=2e-05  Score=66.18  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=80.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v  110 (267)
                      -...|..|....||++....    .+..+++|+......   ... ...+|+.+++.+...++ ++++....+ .   ++
T Consensus        15 i~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQL----TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHI-IKLYQVISTPTDFFMV   89 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             EEeeecCCCCeEEEEEEECC----CCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCE-eEEEEEEecCCeEEEE
Confidence            35667788889999998643    357899998743210   111 11367777776653333 445655432 2   88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ...       + +. ..      . ......+..                 .+...+..|.+
T Consensus        90 ~e~~~~~~L~~-------~l~-------~-~~-~~------~-~~~~~~~~~-----------------qi~~~l~~lH~  129 (276)
T 2h6d_A           90 MEYVSGGELFD-------YIC-------K-HG-RV------E-EMEARRLFQ-----------------QILSAVDYCHR  129 (276)
T ss_dssp             EECCCSCBHHH-------HHH-------H-HC-SC------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EeccCCCcHHH-------HHh-------c-cC-CC------C-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99998865531       111       0 00 00      0 011212221                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       130 --------~~i~H~dl~p~Nil~~~~-~~~~l~dfg~~~~  160 (276)
T 2h6d_A          130 --------HMVVHRDLKPENVLLDAH-MNAKIADFGLSNM  160 (276)
T ss_dssp             --------HCSSCCCCCGGGEEECTT-SCEEECCCCGGGC
T ss_pred             --------CCCccCCCChhhEEECCC-CCEEEeecccccc
Confidence                    248999999999999874 6899999997753

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.84  E-value=3.9e-05  Score=64.79  Aligned_cols=140  Identities=14%  Similarity=0.069  Sum_probs=74.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccC-hHHHHHHHHHHHhCCCCceEEEEECCe---eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFN-RDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i  114 (267)
                      ...|..|....||++..... +..+..+.+|........ ... -.+|+.+++.+..-+ .+++++...++   +|++|+
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~lv~e~~   97 (281)
T 1mp8_A           20 GRCIGEGQFGDVHQGIYMSP-ENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH-IVKLIGVITENPVWIIMELC   97 (281)
T ss_dssp             EEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSCEEEEECC
T ss_pred             EeEeeecCCeeEEEEEEecC-CCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCc-cceEEEEEccCccEEEEecC
Confidence            55667788899999976421 112346888886543211 111 135777776664323 35566665433   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .   ....+    .+ ...+..+..                 .+...+..+-+    
T Consensus        98 ~~~~L~~-------~l-------~---~~~~~----~~-~~~~~~~~~-----------------qi~~~l~~lH~----  134 (281)
T 1mp8_A           98 TLGELRS-------FL-------Q---VRKYS----LD-LASLILYAY-----------------QLSTALAYLES----  134 (281)
T ss_dssp             TTEEHHH-------HH-------H---HTTTT----SC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCCHHH-------HH-------H---hcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8765531       11       1   00000    01 111222221                 12223334432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       135 ----~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  164 (281)
T 1mp8_A          135 ----KRFVHRDIAARNVLVSSN-DCVKLGDFGLSR  164 (281)
T ss_dssp             ----TTCCCSCCSGGGEEEEET-TEEEECC-----
T ss_pred             ----CCeecccccHHHEEECCC-CCEEECcccccc
Confidence                148999999999999974 689999999774

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=97.83  E-value=6.1e-05  Score=65.77  Aligned_cols=32  Identities=16%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             cEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          198 EIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       198 ~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      ...++|+|++|.|||++..++.+.|+||..|.
T Consensus       149 ~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~  180 (360)
T 3e3p_A          149 SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAK  180 (360)
T ss_dssp             TTCCBCSCCCGGGEEEETTTTEEEECCCTTCB
T ss_pred             CCCeecCcCCHHHEEEeCCCCcEEEeeCCCce
Confidence            45699999999999998634679999999874

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.83  E-value=1.9e-05  Score=73.59  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=82.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      ...|..|....||++....     ...+.+|+...+.....+-.+|+++++.+..-.+ .++++...+.   +|+||++|
T Consensus       272 ~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~~~~~~~~~~~~lv~e~~~~  345 (535)
T 2h8h_A          272 EVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-VQLYAVVSEEPIYIVTEYMSK  345 (535)
T ss_dssp             EEEEEECSSEEEEEEEETT-----TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSCEEEECCCTT
T ss_pred             heecccCCCeEEEEEEECC-----CceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCE-eeEEEEEeeccceEeeehhcC
Confidence            4556778889999998642     3678999876543211112478999988864343 4456665433   88999988


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       .       |.+-....      .. ...+..+..                 .+...+..|.+.     
T Consensus       346 gsL~~-------~-------l~~~~~~~------l~-~~~~~~i~~-----------------qi~~~L~~LH~~-----  382 (535)
T 2h8h_A          346 GSLLD-------F-------LKGETGKY------LR-LPQLVDMAA-----------------QIASGMAYVERM-----  382 (535)
T ss_dssp             EEHHH-------H-------HSHHHHTT------CC-HHHHHHHHH-----------------HHHHHHHHHHHT-----
T ss_pred             CcHHH-------H-------HhhcCCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHhC-----
Confidence            65532       1       10000000      01 111222221                 222333444331     


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         .++|+|+++.|||++++ +.+.|+||..+..
T Consensus       383 ---~ivHrDlkp~NIll~~~-~~~kl~DFG~a~~  412 (535)
T 2h8h_A          383 ---NYVHRDLRAANILVGEN-LVCKVADFGLARL  412 (535)
T ss_dssp             ---TCCCSCCSGGGEEECGG-GCEEECCTTSTTT
T ss_pred             ---CeeCCCCCHhhEEEcCC-CcEEEccccccee
Confidence               38999999999999864 6899999998863

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=97.83  E-value=5.8e-05  Score=65.39  Aligned_cols=150  Identities=15%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEECC----
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFGD----  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~----  107 (267)
                      +.++ ++.|..|.-..||+..+.... +..+..+.+|........ .. .-.+|+.+++.+..-.+ -++++.+.+    
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNI-V~l~g~~~~~~~~  104 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV-VCLLGVVTKDQPL  104 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSSC
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCC-CCcceEEEECCEE
Confidence            3444 466788888999998763211 112457788876543221 11 11478888888854333 356776642    


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-------C---CchhHHHHHHHHHHHhhccCcccccccc
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-------R---KALLWDRLRKWVSVAKSFCSAKDAKEFC  177 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~  177 (267)
                      .+|+||++|..+..              .|   +.......       .   ..-.+.....+.                
T Consensus       105 ~lV~Ey~~~G~L~~--------------~L---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~----------------  151 (308)
T 4gt4_A          105 SMIFSYCSHGDLHE--------------FL---VMRSPHSDVGSTDDDRTVKSALEPPDFVHLV----------------  151 (308)
T ss_dssp             EEEEECCSSCBHHH--------------HH---HTTCSSCCCC-----CCEECCCCHHHHHHHH----------------
T ss_pred             EEEEEcCCCCcHHH--------------HH---HhhCccccccccccccccccCCCHHHHHHHH----------------
Confidence            28999999876642              11   11110000       0   000011111111                


Q ss_pred             hhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          178 LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       178 ~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       ..+...+++|-+        ..++|+|++|.|||++++ +.+.|.||..|.
T Consensus       152 -~qia~gl~yLH~--------~~iiHRDLK~~NILl~~~-~~~Ki~DFGlar  193 (308)
T 4gt4_A          152 -AQIAAGMEYLSS--------HHVVHKDLATRNVLVYDK-LNVKISDLGLFR  193 (308)
T ss_dssp             -HHHHHHHHHHHH--------TTCCCSCCSGGGEEECGG-GCEEECCSCCBC
T ss_pred             -HHHHHHHHHHHh--------CCCCCCCccccceEECCC-CCEEECCcccce
Confidence             122233344432        137999999999999974 689999999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.83  E-value=3.9e-05  Score=65.00  Aligned_cols=143  Identities=17%  Similarity=0.135  Sum_probs=78.7

Q ss_pred             CcEEEE-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEEC-----
Q 024452           36 DALQVI-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG-----  106 (267)
Q Consensus        36 ~~~~i~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-----  106 (267)
                      ...++. .|..|....||++....    .+..+.+|+.....  ..... ..+|+.+++.+..-++ .+++..+.     
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~  100 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTE----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI-VRFYDSWESTVKG  100 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTB-CCEEEEEEEESSS
T ss_pred             eeEEeeeeccCCCCeEEEEeEecC----CceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCe-eeeeeeeccccCC
Confidence            345544 46778889999997643    35677778764321  11111 1357777766643333 34454321     


Q ss_pred             C---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          107 D---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       107 ~---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      .   .+|++|++|.++..       ..       .+...        .. ...+..+..+                 +..
T Consensus       101 ~~~~~lv~e~~~~~~L~~-------~l-------~~~~~--------~~-~~~~~~~~~q-----------------i~~  140 (290)
T 1t4h_A          101 KKCIVLVTELMTSGTLKT-------YL-------KRFKV--------MK-IKVLRSWCRQ-----------------ILK  140 (290)
T ss_dssp             CEEEEEEEECCCSCBHHH-------HH-------HHHSS--------CC-HHHHHHHHHH-----------------HHH
T ss_pred             CceEEEEEEecCCCCHHH-------HH-------HHccC--------CC-HHHHHHHHHH-----------------HHH
Confidence            1   27899998865532       11       11100        01 1122222221                 222


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..|.+.      ...++|+|++|.||+++.+++.+.|+||+.+.
T Consensus       141 ~l~~lH~~------~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~  180 (290)
T 1t4h_A          141 GLQFLHTR------TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             HHHHHHTS------SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             HHHHHHcC------CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence            33344321      12489999999999997435689999999874

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.83  E-value=5e-05  Score=64.32  Aligned_cols=138  Identities=16%  Similarity=0.105  Sum_probs=78.3

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeecC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIHA  116 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~G  116 (267)
                      .|..|....||++....    .+..+.+|+.......... ..+|+.+++.+...++ +++++...  +.  ++++|++|
T Consensus        29 ~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~~~  103 (295)
T 2clq_A           29 VLGKGTYGIVYAGRDLS----NQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNI-VQYLGSFSENGFIKIFMEQVPG  103 (295)
T ss_dssp             EEEECSSSEEEEEEETT----TCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTB-CCEEEEEEETTEEEEEEECCSE
T ss_pred             EEeecCcEEEEEEEECC----CCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCE-eeEeeEEEeCCcEEEEEEeCCC
Confidence            56777788999998543    3578888876543222111 1467777777744333 44555543  22  78999987


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..              .+.. +  ..+.   ......+..+..                 .+...+..|.+      
T Consensus       104 ~~L~~--------------~l~~-~--~~~~---~~~~~~~~~~~~-----------------qi~~~l~~lH~------  140 (295)
T 2clq_A          104 GSLSA--------------LLRS-K--WGPL---KDNEQTIGFYTK-----------------QILEGLKYLHD------  140 (295)
T ss_dssp             EEHHH--------------HHHH-T--TCCC---TTCHHHHHHHHH-----------------HHHHHHHHHHH------
T ss_pred             CCHHH--------------HHHh-h--ccCC---CccHHHHHHHHH-----------------HHHHHHHHHHh------
Confidence            65531              1111 0  0000   001112222221                 12233344432      


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        ..++|+|++|.||+++..++.+.|+||+.+.
T Consensus       141 --~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A          141 --NQIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             --TTEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             --CCEEccCCChhhEEEECCCCCEEEeeccccc
Confidence              1499999999999998644689999998774

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.82  E-value=4.1e-05  Score=66.15  Aligned_cols=150  Identities=16%  Similarity=0.027  Sum_probs=79.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      .-+..|..|....||++..... ....+..+++|+......  ......+|+.+++.+. +.-.+++++.+.+    .+|
T Consensus        33 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~~iv~~~~~~~~~~~~~lv  111 (327)
T 2yfx_A           33 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFN-HQNIVRCIGVSLQSLPRFIL  111 (327)
T ss_dssp             EEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCC-CTTBCCEEEEECSSSSCEEE
T ss_pred             EEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCC-CCCCCeEEEEEcCCCCcEEE
Confidence            4566778888899999974311 011356899998754321  1111246777777773 3334556776643    288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..              .+.+....... ..... ...+..+..                 .+...+..|-+
T Consensus       112 ~e~~~~~~L~~--------------~l~~~~~~~~~-~~~~~-~~~~~~i~~-----------------qi~~al~~LH~  158 (327)
T 2yfx_A          112 MELMAGGDLKS--------------FLRETRPRPSQ-PSSLA-MLDLLHVAR-----------------DIACGCQYLEE  158 (327)
T ss_dssp             EECCTTEEHHH--------------HHHHTSCCSSS-TTSCC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCcHHH--------------HHHhhcccccc-ccccc-HHHHHHHHH-----------------HHHHHHHHHhh
Confidence            99998865531              11111111110 00011 111222221                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.||+++.+  +..+.|+||+.+.
T Consensus       159 ~--------~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~  191 (327)
T 2yfx_A          159 N--------HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR  191 (327)
T ss_dssp             T--------TCCCSCCCGGGEEESCSSTTCCEEECCCHHHH
T ss_pred             C--------CeecCcCCHhHEEEecCCCcceEEECcccccc
Confidence            1        38999999999999842  2358999999764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.82  E-value=1.6e-05  Score=68.56  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--c-cccChHHHHHHHHHHHhCCCCceEEEEEC----C---
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--E-VFFNRDDEIRTFECMSSQGQGPRLLGRFG----D---  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~---  107 (267)
                      .-...|..|....||++...... .....+.+|+.....  . ......+|+++++.+...++ +++++...    .   
T Consensus        26 ~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~  103 (323)
T 3qup_A           26 TLGRMLGKGEFGSVREAQLKQED-GSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV-AKLVGVSLRSRAKGRL  103 (323)
T ss_dssp             EEEEEEEEETTEEEEEEEC--------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTB-CCCCEEEECC------
T ss_pred             EEeceecccCCeEEEEEEEcccC-CcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCce-ehhhceeeccccccCC
Confidence            34667788888999999854310 011278899875432  1 11112467777777743333 34444331    1   


Q ss_pred             ---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 ---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         .++++|++|.++...       ...     .......  ..  .. ...+..+..                 .+...
T Consensus       104 ~~~~~v~e~~~~~~L~~~-------l~~-----~~~~~~~--~~--~~-~~~~~~i~~-----------------qi~~a  149 (323)
T 3qup_A          104 PIPMVILPFMKHGDLHAF-------LLA-----SRIGENP--FN--LP-LQTLVRFMV-----------------DIACG  149 (323)
T ss_dssp             -CEEEEEECCTTCBHHHH-------HHH-----HHC---C--CC--CC-HHHHHHHHH-----------------HHHHH
T ss_pred             CccEEEEEeccCCcHHHH-------HHh-----hhccccc--cc--cC-HHHHHHHHH-----------------HHHHH
Confidence               367899988665321       100     0000000  00  11 112222222                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..|-+.        .++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       150 l~~LH~~--------~ivH~Dikp~NIli~~~-~~~kl~Dfg~a~  185 (323)
T 3qup_A          150 MEYLSSR--------NFIHRDLAARNCMLAED-MTVCVADFGLSR  185 (323)
T ss_dssp             HHHHHHT--------TCCCSCCSGGGEEECTT-SCEEECCCCC--
T ss_pred             HHHHHcC--------CcccCCCCcceEEEcCC-CCEEEeeccccc
Confidence            3444321        38999999999999874 689999999874

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=97.81  E-value=5.4e-05  Score=66.01  Aligned_cols=137  Identities=18%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---------cccChHHHHHHHHHHHhCCCCceEEEEECC-e
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---------VFFNRDDEIRTFECMSSQGQGPRLLGRFGD-G  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---------~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~  108 (267)
                      .+..|..|....||++....    .+..+++|+......         ..-...+|+.+++.+...+ .++++..+.+ +
T Consensus        28 ~~~~lG~G~~g~Vy~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-Iv~~~~~~~~~~  102 (335)
T 3dls_A           28 TMSPLGSGAFGFVWTAVDKE----KNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHAN-IIKVLDIFENQG  102 (335)
T ss_dssp             EEEECSSSSSCSEEEEEETT----TTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTT-BCCEEEEEECSS
T ss_pred             EEeEEEecCCEEEEEEEECC----CCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCC-EeeEEEEEeeCC
Confidence            56778888889999997543    357889998754320         0011136999988885433 3456665542 2


Q ss_pred             ---eEEEeecCC-CCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          109 ---RVEEFIHAR-TLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       109 ---~v~e~i~G~-~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         +|++|+++. .+..              .+.   .. .   . .. ......+..                 .+...
T Consensus       103 ~~~lv~e~~~~g~~l~~--------------~~~---~~-~---~-l~-~~~~~~i~~-----------------qi~~~  142 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFA--------------FID---RH-P---R-LD-EPLASYIFR-----------------QLVSA  142 (335)
T ss_dssp             EEEEEEECCTTSCBHHH--------------HHH---TC-C---C-CC-HHHHHHHHH-----------------HHHHH
T ss_pred             EEEEEEEeCCCCccHHH--------------HHH---hc-C---C-CC-HHHHHHHHH-----------------HHHHH
Confidence               788887542 2211              110   00 0   0 01 111222221                 22233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..|-+.        .++|+|++|.|||++++ +.+.|+||..+.
T Consensus       143 L~~LH~~--------~ivH~Dlkp~NIll~~~-~~~kL~Dfg~a~  178 (335)
T 3dls_A          143 VGYLRLK--------DIIHRDIKDENIVIAED-FTIKLIDFGSAA  178 (335)
T ss_dssp             HHHHHHT--------TEECSCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             HHHHHhC--------CeEEeccCHHHEEEcCC-CcEEEeecccce
Confidence            3444321        39999999999999874 689999999874

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=97.81  E-value=2.7e-05  Score=65.79  Aligned_cols=29  Identities=14%  Similarity=0.124  Sum_probs=22.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       130 ~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  158 (290)
T 3fme_A          130 SVIHRDVKPSNVLINAL-GQVKMCDFGISG  158 (290)
T ss_dssp             CCCCCCCSGGGCEECTT-CCEEBCCC----
T ss_pred             CeecCCCCHHHEEECCC-CCEEEeecCCcc
Confidence            48999999999999974 689999999774

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=97.81  E-value=8.3e-05  Score=65.67  Aligned_cols=154  Identities=20%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEE-C-Ce-
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRF-G-DG-  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~-~-~~-  108 (267)
                      +.++ ...|..|.-..||+........ .....+.+|........  ...-.+|+.++..+..+--.-++++.+ . +. 
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~  143 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  143 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCE
Confidence            4455 4567888889999997543111 12345777876544211  111247888888887654344567654 2 22 


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC-------CCchhHHHHHHHHHHHhhccCcccccccchh
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-------RKALLWDRLRKWVSVAKSFCSAKDAKEFCLY  179 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  179 (267)
                        +|+||++|..+..              .|.+-.....+..       ...-.+.....|..                 
T Consensus       144 ~~iV~Ey~~~G~L~~--------------~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------  192 (353)
T 4ase_A          144 LMVIVEFCKFGNLST--------------YLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSF-----------------  192 (353)
T ss_dssp             CEEEEECCTTEEHHH--------------HHHHTGGGBCCC-------CTTCBCHHHHHHHHH-----------------
T ss_pred             EEEEEEcCCCCCHHH--------------HHHhcccccccccccchhhccccCCHHHHHHHHH-----------------
Confidence              8899999876542              1111111111100       00001111222221                 


Q ss_pred             hHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          180 TLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       180 ~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+...+++|-+        ..++|+|++|.|||++++ +.+.|.||..|.
T Consensus       193 qia~gl~yLH~--------~~iiHRDLK~~NILl~~~-~~vKi~DFGlar  233 (353)
T 4ase_A          193 QVAKGMEFLAS--------RKCIHRDLAARNILLSEK-NVVKICDFGLAR  233 (353)
T ss_dssp             HHHHHHHHHHH--------TTCCCSCCSGGGEEECGG-GCEEECCCGGGS
T ss_pred             HHHHHHHhHhh--------CCeecCccCccceeeCCC-CCEEECcchhhh
Confidence            12233344432        137999999999999874 689999999885

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.80  E-value=4e-05  Score=64.94  Aligned_cols=138  Identities=15%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      -+..|..|....||++....    .+..+++|+.......   .....+|+.+++.+...+ .+++++...+  .  +++
T Consensus        26 i~~~lg~G~~g~V~~~~~~~----~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           26 IVCMLGKGSFGEVLKCKDRI----TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN-IMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             eeEEEcCCCCEEEEEEEEcC----CCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCC-ccEEEEEEeCCCeEEEEE
Confidence            45667778788999998643    3578999987433211   111136777777774333 3455655432  2  788


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..          .+.+    -.  .      .. ...+..+..                 .+...+..|-+.
T Consensus       101 e~~~~~~L~~----------~l~~----~~--~------~~-~~~~~~i~~-----------------qi~~~l~~LH~~  140 (287)
T 2wei_A          101 ELYTGGELFD----------EIIK----RK--R------FS-EHDAARIIK-----------------QVFSGITYMHKH  140 (287)
T ss_dssp             CCCCSCBHHH----------HHHH----HS--S------CC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             EccCCCCHHH----------HHHh----cC--C------CC-HHHHHHHHH-----------------HHHHHHHHHHHC
Confidence            9988765531          1110    00  0      01 111222221                 222333444321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~  229 (267)
                              .++|+|++|.||+++.++  ..+.|+||+.+.
T Consensus       141 --------~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~  172 (287)
T 2wei_A          141 --------NIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (287)
T ss_dssp             --------TCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred             --------CeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence                    389999999999997532  258999999774

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.80  E-value=5.8e-05  Score=69.55  Aligned_cols=138  Identities=20%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ...|..|....||++....    .+..+.+|+..........-.+|+.+++.+..-+ ..++++.+.+    .+|+||++
T Consensus       225 ~~~lG~G~fg~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~l~~~~~~~~~~~lv~E~~~  299 (495)
T 1opk_A          225 KHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFYIITEFMT  299 (495)
T ss_dssp             EEESGGGTTSSEEEEEEGG----GTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEEEECCT
T ss_pred             eeEecCCCCeEEEEEEEcC----CCeEEEEEEecCcccchHHHHHHHHHHHhcCCCC-EeeEEEEEecCCcEEEEEEccC
Confidence            4556778889999998653    2478999987654322112247888888885433 3456666542    28999999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..              .+.+.....      .. ...+..+..                 .+...+..|.+.    
T Consensus       300 ~g~L~~--------------~l~~~~~~~------~~-~~~~~~i~~-----------------qi~~~L~~LH~~----  337 (495)
T 1opk_A          300 YGNLLD--------------YLRECNRQE------VS-AVVLLYMAT-----------------QISSAMEYLEKK----  337 (495)
T ss_dssp             TCBHHH--------------HHHHSCTTT------SC-HHHHHHHHH-----------------HHHHHHHHHHHT----
T ss_pred             CCCHHH--------------HHHhcCcCC------CC-HHHHHHHHH-----------------HHHHHHHHHHhC----
Confidence            865531              111111100      01 111222221                 222333444431    


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          .++|+|++|.|||++++ +.+.|+||..|.
T Consensus       338 ----~ivHrDlkp~NIll~~~-~~~kl~DFG~a~  366 (495)
T 1opk_A          338 ----NFIHRNLAARNCLVGEN-HLVKVADFGLSR  366 (495)
T ss_dssp             ----TEECSCCSGGGEEECGG-GCEEECCTTCEE
T ss_pred             ----CcccCCCChhhEEECCC-CcEEEeecccce
Confidence                39999999999999874 689999998764

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.79  E-value=0.00011  Score=64.91  Aligned_cols=138  Identities=12%  Similarity=0.029  Sum_probs=80.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-------cChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-------FNRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-------~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      -...|..|....||++....    .+..+.+|+........       ....+|+.+++.+.. .-.++++..+.+.   
T Consensus        16 ~~~~LG~G~fg~V~~~~~~~----~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~h-pnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           16 IGEELGSGQFAIVKKCREKS----TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLH-PNIITLHDVYENRTDV   90 (361)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCC-TTBCCEEEEEECSSEE
T ss_pred             EeeEEeeCcCEEEEEEEECC----CCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCC-cCCCcEEEEEEeCCEE
Confidence            35667778889999998643    35788899875432110       011468888877753 2334566665432   


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|..+..              .+.+   .    .. .+ ......+..+                 +...+..
T Consensus        91 ~lv~e~~~gg~L~~--------------~l~~---~----~~-l~-~~~~~~i~~q-----------------i~~aL~~  130 (361)
T 2yab_A           91 VLILELVSGGELFD--------------FLAQ---K----ES-LS-EEEATSFIKQ-----------------ILDGVNY  130 (361)
T ss_dssp             EEEEECCCSCBHHH--------------HHTT---C----SC-CB-HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEcCCCCcHHH--------------HHHh---c----CC-CC-HHHHHHHHHH-----------------HHHHHHH
Confidence             8899999865532              1100   0    00 11 1122222222                 2233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|.||++++++.   .+.|+||+.|.
T Consensus       131 LH~--------~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~  167 (361)
T 2yab_A          131 LHT--------KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (361)
T ss_dssp             HHH--------TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCE
T ss_pred             HHH--------CCcccCCCCHHHEEEeCCCCCccCEEEEecCCce
Confidence            432        24999999999999986432   68999999874

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=97.77  E-value=2.4e-05  Score=67.23  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---ccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---FFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -...|..|....||++....    .+..+++|+.......   ... ..+|+.+++.+..-++ ++++..+.  +.  ++
T Consensus        38 ~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-v~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           38 LRRLVGRGGMGDVYEAEDTV----RERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHV-VPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTB-CCEEEEEEETTEEEEE
T ss_pred             EEEEEcCCCCeeEEEEEEcC----CCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCe-eEEEEEEeeCCeEEEE
Confidence            45666777788999998543    3578999987543211   111 1356666666643333 44555543  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       ...       +- .   +    .. ......+..                 .+...+..|.+
T Consensus       113 ~e~~~~~~L~~-------~l~-------~~-~---~----~~-~~~~~~i~~-----------------qi~~~l~~lH~  152 (309)
T 2h34_A          113 MRLINGVDLAA-------MLR-------RQ-G---P----LA-PPRAVAIVR-----------------QIGSALDAAHA  152 (309)
T ss_dssp             EECCCCEEHHH-------HHH-------HH-C---S----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EEecCCCCHHH-------HHH-------hc-C---C----CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999865532       111       00 0   0    01 111222221                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .        .++|+|++|.||+++.+ +.+.|+||+.+..
T Consensus       153 ~--------~i~H~dlkp~NIl~~~~-~~~kl~Dfg~~~~  183 (309)
T 2h34_A          153 A--------GATHRDVKPENILVSAD-DFAYLVDFGIASA  183 (309)
T ss_dssp             T--------TCCCSCCCGGGEEECTT-SCEEECSCCC---
T ss_pred             C--------cCCcCCCChHHEEEcCC-CCEEEecCccCcc
Confidence            1        38999999999999874 6899999997753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=97.77  E-value=6.9e-05  Score=65.42  Aligned_cols=29  Identities=10%  Similarity=0.221  Sum_probs=25.0

Q ss_pred             EEEccCCCCCCeeeeCCC-CCEEEEeeccc
Q 024452          200 GFCHNDLQYGNIMIDEET-SSITIIVSFTF  228 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~-~~v~lIDwE~a  228 (267)
                      .++|+|++|.|||++.++ +.+.|+||..|
T Consensus       171 ~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a  200 (345)
T 2v62_A          171 EYVHGDIKAANLLLGYKNPDQVYLADYGLS  200 (345)
T ss_dssp             TEECSCCSGGGEEEESSSTTSEEECCCTTC
T ss_pred             CeeCCCcCHHHEEEccCCCCcEEEEeCCCc
Confidence            499999999999998642 27999999988

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=97.77  E-value=5.4e-05  Score=69.60  Aligned_cols=138  Identities=15%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      .+..|..|....||++....    .+..+.+|+.....   .......+|+.+++.+..-++ .+++..+.+.    +|+
T Consensus        41 ~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-v~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           41 RVKKLGSGAYGEVLLCRDKV----THVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNI-MKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             EEEEEECC---EEEEEEETT----TCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTB-CCEEEEEECSSEEEEEE
T ss_pred             EeeEEecCCCEEEEEEEECC----CCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCC-CeEEEEEEeCCEEEEEE
Confidence            46677888899999998643    35788888865432   111112468888877754333 4566655432    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..          .+.+      ....      . ......+..                 .+...+..|-+ 
T Consensus       116 e~~~~g~L~~----------~~~~------~~~~------~-~~~~~~i~~-----------------qi~~~l~~lH~-  154 (494)
T 3lij_A          116 ECYKGGELFD----------EIIH------RMKF------N-EVDAAVIIK-----------------QVLSGVTYLHK-  154 (494)
T ss_dssp             ECCCSCBHHH----------HHHH------HSSC------C-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             ecCCCCcHHH----------HHHH------cCCC------C-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9999865421          1110      0000      1 011222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++..  .+.+.|+||..|.
T Consensus       155 -------~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          155 -------HNIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             -------TTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             -------CCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence                   138999999999999753  2348999999774

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=97.76  E-value=7.7e-05  Score=66.06  Aligned_cols=137  Identities=18%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~  113 (267)
                      ...|..|....||++....    ++..+.+|+...... .. ..-.+|+.+++.+..-+ ..++++...+    .+|+||
T Consensus       119 ~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~e~  193 (377)
T 3cbl_A          119 GEQIGRGNFGEVFSGRLRA----DNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN-IVRLIGVCTQKQPIYIVMEL  193 (377)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTT-BCCEEEEECSSSSCEEEEEC
T ss_pred             eeEeccCCCCeEEEEEEec----CCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEecCCCcEEEEEc
Confidence            5667788889999998653    357899998764421 11 11237888887774333 3556776542    289999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .+ +....      . ...+..+..                 .+...+..|.+.  
T Consensus       194 ~~~g~L~~-------~l-------~~-~~~~~------~-~~~~~~~~~-----------------qi~~~l~~LH~~--  232 (377)
T 3cbl_A          194 VQGGDFLT-------FL-------RT-EGARL------R-VKTLLQMVG-----------------DAAAGMEYLESK--  232 (377)
T ss_dssp             CTTCBHHH-------HH-------HH-HGGGC------C-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             CCCCCHHH-------HH-------Hh-cCCCC------C-HHHHHHHHH-----------------HHHHHHHHHHHC--
Confidence            99865431       11       10 00000      1 111222221                 222333444431  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.|||++++ +.+.|+||+.|.
T Consensus       233 ------~ivHrDlkp~Nil~~~~-~~~kl~DfG~s~  261 (377)
T 3cbl_A          233 ------CCIHRDLAARNCLVTEK-NVLKISDFGMSR  261 (377)
T ss_dssp             ------TEECSCCSGGGEEECTT-CCEEECCGGGCE
T ss_pred             ------CcCCcccCHHHEEEcCC-CcEEECcCCCce
Confidence                  39999999999999874 689999999764

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.76  E-value=4.2e-05  Score=68.27  Aligned_cols=76  Identities=11%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC--C----eeEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D----GRVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~----~~v~  111 (267)
                      ...|..|....||++....    .+..+++|+...... ...+ ..+|+++++.+..-++ .++++.+.  +    .+|+
T Consensus        14 ~~~LG~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A           14 SDILGQGATANVFRGRHKK----TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNI-VKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEECSSEEEEEEEETT----TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTB-CCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEcCCCeEEEEEEECC----CCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCC-CeEEEeeccCCCCeeEEEE
Confidence            4556778789999998643    357899998754321 1111 1378888888854333 44555432  2    2789


Q ss_pred             EeecCCCCC
Q 024452          112 EFIHARTLS  120 (267)
Q Consensus       112 e~i~G~~l~  120 (267)
                      ||++|.++.
T Consensus        89 e~~~~g~L~   97 (396)
T 4eut_A           89 EFCPCGSLY   97 (396)
T ss_dssp             CCCTTEEHH
T ss_pred             ecCCCCCHH
Confidence            999886553

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.76  E-value=7.8e-05  Score=64.56  Aligned_cols=142  Identities=16%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~  113 (267)
                      .+..|..|....||++...........++++|.......  ......+|+.+++.+...++ +++++.+.++   .+++|
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~v~e~   97 (327)
T 3poz_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-CRLLGICLTSTVQLITQL   97 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTB-CCEEEEEESSSEEEEEEC
T ss_pred             cceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCE-eEEEEEEecCCeEEEEEe
Confidence            456778888899999985421100123467777643321  11112468888888854333 4566655332   78899


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+   +....+    .. ...+..|..+                 +...+..|-+.  
T Consensus        98 ~~~g~L~~--------------~l---~~~~~~----~~-~~~~~~~~~q-----------------i~~~l~~LH~~--  136 (327)
T 3poz_A           98 MPFGCLLD--------------YV---REHKDN----IG-SQYLLNWCVQ-----------------IAKGMNYLEDR--  136 (327)
T ss_dssp             CTTCBHHH--------------HH---HHSTTS----CC-HHHHHHHHHH-----------------HHHHHHHHHHT--
T ss_pred             cCCCcHHH--------------HH---HhcCCC----CC-HHHHHHHHHH-----------------HHHHHHHHhhC--
Confidence            88754421              11   111110    01 1122223221                 22333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.|||++++ +.+.|+||..|.
T Consensus       137 ------~ivH~Dikp~NIll~~~-~~~kl~Dfg~a~  165 (327)
T 3poz_A          137 ------RLVHRDLAARNVLVKTP-QHVKITDFGLAK  165 (327)
T ss_dssp             ------TCCCSCCCGGGEEEEET-TEEEECCTTHHH
T ss_pred             ------CeeCCCCChheEEECCC-CCEEEccCccee
Confidence                  48999999999999974 689999998763

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=97.76  E-value=1.7e-05  Score=69.56  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=79.7

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      ..+..|..|....||++....    .+..+.+|+....... .. ...+|+.+++.+...+ .+++++.+.  +.  +|+
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~----~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~  110 (360)
T 3eqc_A           36 EKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICM  110 (360)
T ss_dssp             EEEEEEEECSSCEEEEEEETT----TCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             eeeeeecCCCCeEEEEEEECC----CCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCC-EEEEeEEEEECCEEEEEE
Confidence            446677888889999998653    3578889987554211 11 1135666666553222 345565543  22  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...       +-.  .      .. ...+..+..                 .+...+..|.+.
T Consensus       111 e~~~~~~L~~-------~l~-------~~~--~------~~-~~~~~~i~~-----------------~i~~~l~~lh~~  150 (360)
T 3eqc_A          111 EHMDGGSLDQ-------VLK-------KAG--R------IP-EQILGKVSI-----------------AVIKGLTYLREK  150 (360)
T ss_dssp             CCCTTCBHHH-------HHH-------HHS--S------CC-HHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred             ECCCCCCHHH-------HHH-------HcC--C------CC-HHHHHHHHH-----------------HHHHHHHHHHHh
Confidence            9999866532       111       000  0      00 111222221                 122233333321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       151 -------~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  180 (360)
T 3eqc_A          151 -------HKIMHRDVKPSNILVNSR-GEIKLCDFGVSG  180 (360)
T ss_dssp             -------HCCCCSCCSGGGEEECTT-CCEEECCCCCCH
T ss_pred             -------CCEEcCCccHHHEEECCC-CCEEEEECCCCc
Confidence                   138999999999999874 689999999773

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=97.74  E-value=7.9e-05  Score=62.88  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=78.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccc-cChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVF-FNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -...|..|....||++....    .+..+++|+.....   ... ....+|+.+++.+...+ .+++++...+  .  ++
T Consensus        18 ~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           18 IGRPLGKGKFGNVYLAREKQ----NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN-ILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             eeheecCCCCeEEEEEEEcC----CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCC-EeeEEEEEEcCCEEEEE
Confidence            35667778889999998643    35688899864321   001 11136777777775333 3455665532  2  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..          .+    .+ +. .      .+ ...+..+..                 .+...+..|.+
T Consensus        93 ~e~~~~~~L~~----------~l----~~-~~-~------~~-~~~~~~~~~-----------------qi~~~l~~lH~  132 (284)
T 2vgo_A           93 LEFAPRGELYK----------EL----QK-HG-R------FD-EQRSATFME-----------------ELADALHYCHE  132 (284)
T ss_dssp             ECCCTTEEHHH----------HH----HH-HS-S------CC-HHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EEeCCCCcHHH----------HH----Hh-cC-C------CC-HHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99988765421          11    10 00 0      01 111222221                 12233333432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       133 --------~~i~H~dl~p~Nil~~~~-~~~kl~Dfg~~~  162 (284)
T 2vgo_A          133 --------RKVIHRDIKPENLLMGYK-GELKIADFGWSV  162 (284)
T ss_dssp             --------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             --------CCceecCCCHHHEEEcCC-CCEEEecccccc
Confidence                    249999999999999874 689999999763

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.73  E-value=2.2e-05  Score=71.27  Aligned_cols=139  Identities=19%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      -+..|..|....||++....    .+..+.+|+.....   .. .....+|..+++.+..-. .+++++.+.  +.  +|
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF-LTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEHHHHC-------------CCCCCSCTT-SCCEEEEEEETTEEEEE
T ss_pred             EeEEEeeCcCEEEEEEEEcC----CCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCe-EeeEEEEEeeCCEEEEE
Confidence            35667778889999997543    35789999864321   00 011124555544443222 344555443  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..          .+    .+ +. .      .. ......+..                 .+...++.|-+
T Consensus       227 ~e~~~~~~L~~----------~l----~~-~~-~------~~-~~~~~~~~~-----------------qi~~aL~~LH~  266 (446)
T 4ejn_A          227 MEYANGGELFF----------HL----SR-ER-V------FS-EDRARFYGA-----------------EIVSALDYLHS  266 (446)
T ss_dssp             ECCCSSCBHHH----------HH----HH-HS-C------CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EeeCCCCcHHH----------HH----Hh-cC-C------CC-HHHHHHHHH-----------------HHHHHHHHHhh
Confidence            99999865521          01    00 00 0      00 111222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                             ...++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       267 -------~~giiHrDlkp~NIll~~~-~~~kl~DFG~a~~  298 (446)
T 4ejn_A          267 -------EKNVVYRDLKLENLMLDKD-GHIKITDFGLCKE  298 (446)
T ss_dssp             -------HTCCCCCCCCGGGEEECSS-SCEEECCCCCCCT
T ss_pred             -------cCCEEECCCCHHHEEECCC-CCEEEccCCCcee
Confidence                   1248999999999999874 6899999998753

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=97.73  E-value=4.3e-05  Score=64.84  Aligned_cols=136  Identities=13%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--cc-ChHHHHHHHHHHHhCCCCceEEEEECC-e---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FF-NRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~  111 (267)
                      -+..|..|....||++...     .+..+++|........  .. ...+|+.+++.+..-+ ..++++...+ +   +++
T Consensus         6 ~~~~lg~G~~g~V~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQNN-----YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN-IVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             EEEEEEEETTEEEEEEEET-----TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTT-BCCEEEEEECSSCEEEEE
T ss_pred             hhhhcccCCCEEEEEEEcC-----CCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCC-EeeeeeEEccCCeEEEEE
Confidence            4567788888999999853     2578888887543211  11 1136777777764333 3456665532 1   789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++| ++.              ..+..   ...  .  .. ......+..                 .+...+..|-+ 
T Consensus        80 e~~~~-~l~--------------~~~~~---~~~--~--~~-~~~~~~~~~-----------------qi~~~l~~lH~-  118 (288)
T 1ob3_A           80 EHLDQ-DLK--------------KLLDV---CEG--G--LE-SVTAKSFLL-----------------QLLNGIAYCHD-  118 (288)
T ss_dssp             ECCSE-EHH--------------HHHHT---STT--C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EecCC-CHH--------------HHHHh---ccc--C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            99885 221              11111   000  0  01 111222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       119 -------~~i~H~dlkp~Nil~~~~-~~~kl~Dfg~~~  148 (288)
T 1ob3_A          119 -------RRVLHRDLKPQNLLINRE-GELKIADFGLAR  148 (288)
T ss_dssp             -------TTCCCSCCCGGGEEECTT-SCEEECCTTHHH
T ss_pred             -------CCeecCCCCHHHEEEcCC-CCEEEeECcccc
Confidence                   148999999999999874 689999998764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=97.72  E-value=0.00012  Score=65.40  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC----Ce----eEEE
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG----DG----RVEE  112 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~~----~v~e  112 (267)
                      ..|..|....||++....    .+..+.+|+.....    ...+|+.++..+..+--..+++..+.    +.    +|+|
T Consensus        68 ~~LG~G~~g~V~~~~~~~----~~~~vAiK~~~~~~----~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E  139 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKR----TQEKFALKMLQDCP----KARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME  139 (400)
T ss_dssp             EEEEEETTEEEEEEEETT----TCCEEEEEEEECSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeeeccCeEEEEEEECC----CCCEEEEEEeCcch----hHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEE
Confidence            467888889999997543    35789999875321    12467777766655544455665432    12    7899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|.++..              .+.   ...   ..... ......+..+                 +...+..|-+  
T Consensus       140 ~~~gg~L~~--------------~l~---~~~---~~~l~-~~~~~~i~~q-----------------i~~aL~~LH~--  179 (400)
T 1nxk_A          140 CLDGGELFS--------------RIQ---DRG---DQAFT-EREASEIMKS-----------------IGEAIQYLHS--  179 (400)
T ss_dssp             CCCSEEHHH--------------HHH---CC------CCB-HHHHHHHHHH-----------------HHHHHHHHHH--
T ss_pred             eCCCCcHHH--------------HHH---HhC---CCCCC-HHHHHHHHHH-----------------HHHHHHHHHH--
Confidence            999865531              111   100   00011 1122222221                 2233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~~  230 (267)
                            ..++|+|++|+|||++.+  ++.+.|+||+.|..
T Consensus       180 ------~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~  213 (400)
T 1nxk_A          180 ------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  213 (400)
T ss_dssp             ------TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             ------CCccccCcCcceEEEecCCCCccEEEEecccccc
Confidence                  238999999999999862  35799999998753

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.72  E-value=6.9e-05  Score=65.28  Aligned_cols=135  Identities=11%  Similarity=0.093  Sum_probs=77.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECC---------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGD---------  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~---------  107 (267)
                      -...|..|....||++....    .+..+++|+....... . ....+|+.+++.+...++ +++++....         
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           15 LKSLLGEGAYGVVCSATHKP----TGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENI-ITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTB-CCEEEECCCSCSTTCCCE
T ss_pred             EeeEEcCCCCeEEEEEEECC----CCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCc-CCeeeeecccccCccceE
Confidence            45667788889999998643    3578999987543221 1 112368888887754333 445554321         


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                      .++++|++| .+.              ..+..   ...      . ...+..+..                 .+...+..
T Consensus        90 ~lv~e~~~~-~L~--------------~~~~~---~~~------~-~~~~~~~~~-----------------qi~~~L~~  127 (353)
T 2b9h_A           90 YIIQELMQT-DLH--------------RVIST---QML------S-DDHIQYFIY-----------------QTLRAVKV  127 (353)
T ss_dssp             EEEECCCSE-EHH--------------HHHHH---CCC------C-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEeccCc-cHH--------------HHHhh---cCC------C-HHHHHHHHH-----------------HHHHHHHH
Confidence            167888764 111              11111   000      1 111222222                 12233334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       128 LH~--------~~ivH~Dlkp~Nil~~~~-~~~kl~Dfg~a~  160 (353)
T 2b9h_A          128 LHG--------SNVIHRDLKPSNLLINSN-CDLKVCDFGLAR  160 (353)
T ss_dssp             HHH--------TTEECSCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHH--------CCeecCCCCHHHeEEcCC-CcEEEEeccccc
Confidence            432        149999999999999874 689999999774

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.71  E-value=0.00012  Score=64.66  Aligned_cols=136  Identities=20%  Similarity=0.248  Sum_probs=73.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEEC-C------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRFG-D------  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~-~------  107 (267)
                      ..+..|..|....||++....    .+..+.+|.......  .... ..+|+.+++.+..-++. +++.... .      
T Consensus        28 ~~~~~lG~G~~g~V~~a~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv-~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           28 RDLQPVGSGAYGAVCSAVDGR----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVI-GLLDVFTPDETLDDF  102 (367)
T ss_dssp             EEEEEC------CEEEEEETT----TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBC-CCSEEECSCSSTTTC
T ss_pred             EEeEEeeecCCeEEEEEEECC----CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCC-CceeeEecCCccccC
Confidence            446777888889999997543    357899998744321  1111 13788888888643433 3334331 1      


Q ss_pred             ---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 ---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         .+|++|+ |.++.           .+   +.. .  ..      . ...+..+..                 .+...
T Consensus       103 ~~~~lv~e~~-~~~L~-----------~~---~~~-~--~l------~-~~~~~~~~~-----------------qi~~~  140 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLG-----------KL---MKH-E--KL------G-EDRIQFLVY-----------------QMLKG  140 (367)
T ss_dssp             CCCEEEEECC-SEEHH-----------HH---HHH-C--CC------C-HHHHHHHHH-----------------HHHHH
T ss_pred             ceEEEEEecC-CCCHH-----------HH---Hhc-C--CC------C-HHHHHHHHH-----------------HHHHH
Confidence               2778887 43321           11   111 0  01      0 111222222                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..|-+        ..++|+|++|+||+++++ +.+.|+||+.|.
T Consensus       141 L~~LH~--------~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~a~  176 (367)
T 1cm8_A          141 LRYIHA--------AGIIHRDLKPGNLAVNED-CELKILDFGLAR  176 (367)
T ss_dssp             HHHHHH--------TTEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHHHHH--------CCccccCcCHHHEEEcCC-CCEEEEeeeccc
Confidence            344432        139999999999999974 689999999774

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.71  E-value=0.00011  Score=66.82  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      ...|..|....||++....     ...+.+|+...+.....+-.+|+.+++.+..-.+ .++++...+.   +|+||++|
T Consensus       189 ~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~iv~e~~~~  262 (452)
T 1fmk_A          189 EVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-VQLYAVVSEEPIYIVTEYMSK  262 (452)
T ss_dssp             EEEEEECSSCEEEEEEETT-----TEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSCEEEECCCTT
T ss_pred             eeeecCCCCeEEEEEEECC-----CceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCE-eeEEEEEcCCceEEEehhhcC
Confidence            4556778788999998642     3678999876543211112478888888854333 4466665433   88999998


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ..       .+-....      .. ...+..+..                 .+...+..|.+.     
T Consensus       263 gsL~~-------~l-------~~~~~~~------~~-~~~~~~i~~-----------------qi~~~l~~LH~~-----  299 (452)
T 1fmk_A          263 GSLLD-------FL-------KGETGKY------LR-LPQLVDMAA-----------------QIASGMAYVERM-----  299 (452)
T ss_dssp             CBHHH-------HH-------SHHHHTT------CC-HHHHHHHHH-----------------HHHHHHHHHHHT-----
T ss_pred             CCHHH-------HH-------HhcCCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHhC-----
Confidence            66532       11       0000000      01 111222221                 222333444331     


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         .++|+|++|.|||++++ +.+.|+||..|..
T Consensus       300 ---~ivHrDlkp~Nill~~~-~~~kl~DfG~a~~  329 (452)
T 1fmk_A          300 ---NYVHRDLRAANILVGEN-LVCKVADFGLARL  329 (452)
T ss_dssp             ---TCCCSCCSGGGEEECGG-GCEEECCCCTTC-
T ss_pred             ---CeeCCCCChhhEEECCC-CCEEECCCcccee
Confidence               38999999999999874 6899999998863

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=97.71  E-value=0.00085  Score=57.48  Aligned_cols=141  Identities=13%  Similarity=0.093  Sum_probs=81.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHh--CCCCceEEEEEC-----C
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSS--QGQGPRLLGRFG-----D  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~--~gl~P~v~~~~~-----~  107 (267)
                      .-+..|..|....||++.....   .+..+++|+.....   .......+|..+++.+..  +.-.+++++.+.     .
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           14 ECVAEIGEGAYGKVFKARDLKN---GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   90 (326)
T ss_dssp             EEEEEEEEETTEEEEEEEETTT---TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             eeeeeecccccEEEEEEEecCC---CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence            3466778888899999985321   24678888764321   112233578999988874  333455665532     2


Q ss_pred             e----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          108 G----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       108 ~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      .    ++++|++| ++.              ..+.+.....      .. ...+..+..                 .+..
T Consensus        91 ~~~~~lv~e~~~~-~L~--------------~~l~~~~~~~------~~-~~~~~~~~~-----------------qi~~  131 (326)
T 1blx_A           91 ETKLTLVFEHVDQ-DLT--------------TYLDKVPEPG------VP-TETIKDMMF-----------------QLLR  131 (326)
T ss_dssp             EEEEEEEEECCSC-BHH--------------HHHHHSCTTC------SC-HHHHHHHHH-----------------HHHH
T ss_pred             CceEEEEEecCCC-CHH--------------HHHHhcccCC------CC-HHHHHHHHH-----------------HHHH
Confidence            1    78899886 221              1111111100      01 112222222                 1223


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+..|.+        ..++|+|++|+||+++.+ +.+.|+||+.+.
T Consensus       132 ~l~~lH~--------~gi~H~dlkp~Nili~~~-~~~kl~Dfg~~~  168 (326)
T 1blx_A          132 GLDFLHS--------HRVVHRDLKPQNILVTSS-GQIKLADFGLAR  168 (326)
T ss_dssp             HHHHHHH--------TTCCCCCCCGGGEEECTT-CCEEECSCCSCC
T ss_pred             HHHHHHH--------CCceeccCCHHHeEEcCC-CCEEEecCcccc
Confidence            3334432        148999999999999874 689999999875

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.70  E-value=5.3e-05  Score=69.27  Aligned_cols=133  Identities=18%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--c-ccChHHHHHHHHHHHhCCCCceEEEEEC--C-------
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--V-FFNRDDEIRTFECMSSQGQGPRLLGRFG--D-------  107 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~-------  107 (267)
                      +..|..|....||++....    .+..+.+|+......  . .....+|+.+++.+..-++ .+++..+.  +       
T Consensus        67 ~~~lG~G~~g~V~~a~~~~----~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~l~~~~~~~~~~~~~~~  141 (464)
T 3ttj_A           67 LKPIGSGAQGIVCAAYDAV----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI-ISLLNVFTPQKTLEEFQD  141 (464)
T ss_dssp             EEEEEECSSCEEEEEEETT----TTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTB-CCCSEEECSCCSTTTCCE
T ss_pred             EEEeecCCCeEEEEEEECC----CCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCC-CcEEEEEccCCccccCCe
Confidence            5667888889999997543    357888998754311  1 1111367778877754333 33444431  1       


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .+|+||++|...           ..+       .. .      .. ...+..+..                 .+...++
T Consensus       142 ~~lv~E~~~~~l~-----------~~~-------~~-~------l~-~~~~~~~~~-----------------qil~aL~  178 (464)
T 3ttj_A          142 VYLVMELMDANLC-----------QVI-------QM-E------LD-HERMSYLLY-----------------QMLCGIK  178 (464)
T ss_dssp             EEEEEECCSEEHH-----------HHH-------TS-C------CC-HHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEeCCCCCHH-----------HHH-------hh-c------CC-HHHHHHHHH-----------------HHHHHHH
Confidence             278999876311           101       00 0      01 112222222                 2223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .|-+.        .++|+|++|+|||++.+ +.+.|+||+.|.
T Consensus       179 ~lH~~--------~iiHrDlkp~NIll~~~-~~~kl~DFG~a~  212 (464)
T 3ttj_A          179 HLHSA--------GIIHRDLKPSNIVVKSD-CTLKILDFGLAR  212 (464)
T ss_dssp             HHHHT--------TCCCCCCCGGGEEECTT-SCEEECCCCCC-
T ss_pred             HHHHC--------CcccCCCChHhEEEeCC-CCEEEEEEEeee
Confidence            44321        38999999999999974 689999999874

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=97.70  E-value=8.1e-05  Score=63.20  Aligned_cols=137  Identities=17%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--cc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..|..|....||++....    .+..+++|+.......  .. ...+|+.+++.+...+ .+++++...  +.  +++
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   81 (299)
T 2r3i_A            7 KVEKIGEGTYGVVYKARNKL----TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN-IVKLLDVIHTENKLYLVF   81 (299)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEC--------CCHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             hhhhhccCCCeeEEEEEEcC----CCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCC-eeeEEEEEecCCceEEEE
Confidence            46677788889999998643    3578999987543211  11 1136777777664333 345565543  22  789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++| ++.              ..+..-...    .  .. ...+..+..                 .+...+..|-+ 
T Consensus        82 e~~~~-~L~--------------~~~~~~~~~----~--~~-~~~~~~~~~-----------------~i~~~l~~lH~-  121 (299)
T 2r3i_A           82 EFLHQ-DLK--------------KFMDASALT----G--IP-LPLIKSYLF-----------------QLLQGLAFCHS-  121 (299)
T ss_dssp             ECCSE-EHH--------------HHHHHTTTT----C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EcccC-CHH--------------HHHHhhhcc----C--CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            99875 221              111110000    0  01 111222222                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                             ..++|+|++|+||+++.+ +.+.|+||+.+
T Consensus       122 -------~~i~H~dlkp~Nili~~~-~~~kl~dfg~~  150 (299)
T 2r3i_A          122 -------HRVLHRDLKPQNLLINTE-GAIKLADFGLA  150 (299)
T ss_dssp             -------TTCCCCCCCGGGEEECTT-SCEEECSTTHH
T ss_pred             -------CCccCCCCCHHHeEEcCC-CCEEECcchhh
Confidence                   148999999999999874 68999999865

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.69  E-value=9.3e-05  Score=65.06  Aligned_cols=136  Identities=9%  Similarity=0.040  Sum_probs=79.0

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC--C------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D------  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~------  107 (267)
                      .-+..|..|....||++....    .+..+++|+...... .... ..+|+.+++.+..-++. +++....  +      
T Consensus        30 ~~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           30 TNLSYIGEGAYGMVCSAYDNL----NKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENII-GINDIIRAPTIEQMKD  104 (364)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBC-CCCEEECCSSTTTCCC
T ss_pred             EEEEEeecCCCeEEEEEEECC----CCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCc-cceeEEecCCccccce
Confidence            346677888889999997543    357889998754321 1111 14788888888644443 3444432  1      


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .++++|++| .+.           .   .+..   ...      . ...+..+..                 .+...+.
T Consensus       105 ~~iv~e~~~~-~L~-----------~---~l~~---~~~------~-~~~~~~i~~-----------------qi~~aL~  142 (364)
T 3qyz_A          105 VYIVQDLMET-DLY-----------K---LLKT---QHL------S-NDHICYFLY-----------------QILRGLK  142 (364)
T ss_dssp             EEEEEECCSE-EHH-----------H---HHHH---CCC------C-HHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEcccCc-CHH-----------H---HHHh---CCC------C-HHHHHHHHH-----------------HHHHHHH
Confidence             177888875 211           1   1110   000      1 111222222                 1223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .|-+        ..++|+|++|+|||++.+ +.+.|+||+.|.
T Consensus       143 ~LH~--------~~ivH~Dikp~NIl~~~~-~~~kl~Dfg~a~  176 (364)
T 3qyz_A          143 YIHS--------ANVLHRDLKPSNLLLNTT-CDLKICDFGLAR  176 (364)
T ss_dssp             HHHH--------TTEECCCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHHH--------CCeecCCCChHhEEECCC-CCEEEEeCcceE
Confidence            4432        139999999999999874 689999999774

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.68  E-value=0.00011  Score=66.87  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      ...|..|....||++....     +..+.+|+..........-.+|+.+++.+..-.+ .++++...+.   +|+||++|
T Consensus       193 ~~~lG~G~fg~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~l~~~~~~~~~~lv~e~~~~  266 (454)
T 1qcf_A          193 EKKLGAGQFGEVWMATYNK-----HTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKL-VKLHAVVTKEPIYIITEFMAK  266 (454)
T ss_dssp             EEEEECCSSEEEEEEEETT-----TEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTB-CCEEEEECSSSCEEEECCCTT
T ss_pred             EEEcccCCceEEEEEEECC-----ccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCE-eeEEEEEeCCccEEEEeecCC
Confidence            4566788889999998642     4678999876543221122478888887754333 3456655432   88999988


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++..       ..       .+-.....      . ...+..+..                 .+...+..|.+.     
T Consensus       267 g~L~~-------~l-------~~~~~~~~------~-~~~~~~~~~-----------------qi~~~l~~LH~~-----  303 (454)
T 1qcf_A          267 GSLLD-------FL-------KSDEGSKQ------P-LPKLIDFSA-----------------QIAEGMAFIEQR-----  303 (454)
T ss_dssp             CBHHH-------HH-------HSHHHHTC------C-HHHHHHHHH-----------------HHHHHHHHHHHT-----
T ss_pred             CcHHH-------HH-------HhccCCCC------C-HHHHHHHHH-----------------HHHHHHHHHHhC-----
Confidence            65532       11       10000000      0 111222221                 222333444431     


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         .++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       304 ---~ivHrDlkp~Nill~~~-~~~kl~DFG~a~~  333 (454)
T 1qcf_A          304 ---NYIHRDLRAANILVSAS-LVCKIADFGLARV  333 (454)
T ss_dssp             ---TCCCSSCSGGGEEECTT-CCEEECSTTGGGG
T ss_pred             ---CccCCCCCHHHEEECCC-CcEEEeeCCCceE
Confidence               38999999999999974 6899999998863

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.68  E-value=0.00021  Score=62.40  Aligned_cols=136  Identities=16%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEEC--C-----
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D-----  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~-----  107 (267)
                      .....|..|....||++....    .+..+++|+......  .... ..+|+.+++.+..-++. ++++...  +     
T Consensus        27 ~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv-~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           27 VSPTHVGSGAYGSVCSAIDKR----SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVI-GLLDVFTPASSLRNF  101 (353)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBC-CCSEEECSCSSGGGC
T ss_pred             EEeeeEecCCCeEEEEEEECC----CCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcc-cHhheEecccccccc
Confidence            446677888889999997543    357899998754321  1111 13677777777543333 3444432  1     


Q ss_pred             ---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 ---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         .++++|++| .+... +                 ...      .. ...+..+..                 .+...
T Consensus       102 ~~~~lv~e~~~~-~l~~~-~-----------------~~~------~~-~~~~~~i~~-----------------qi~~a  138 (353)
T 3coi_A          102 YDFYLVMPFMQT-DLQKI-M-----------------GLK------FS-EEKIQYLVY-----------------QMLKG  138 (353)
T ss_dssp             CCCEEEEECCSE-EGGGT-T-----------------TSC------CC-HHHHHHHHH-----------------HHHHH
T ss_pred             eeEEEEeccccC-CHHHH-h-----------------cCC------CC-HHHHHHHHH-----------------HHHHH
Confidence               378899886 22110 0                 000      01 111222222                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +..|-+.        .++|+|++|.||+++++ +.+.|+||+.+..
T Consensus       139 l~~LH~~--------~ivH~dlkp~NIl~~~~-~~~kl~Dfg~~~~  175 (353)
T 3coi_A          139 LKYIHSA--------GVVHRDLKPGNLAVNED-CELKILDFGLARH  175 (353)
T ss_dssp             HHHHHHT--------TCCCSSCCGGGEEECTT-CCEEECSTTCTTC
T ss_pred             HHHHHHC--------CcccCCCCHHHEeECCC-CcEEEeecccccC
Confidence            3444321        38999999999999974 6899999998753

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.68  E-value=0.00019  Score=61.52  Aligned_cols=151  Identities=16%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -...|..|....||++..... ....+..+.+|+.......  .....+|+.+++.+...+ .+++++...++    +|+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~  107 (322)
T 1p4o_A           29 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH-VVRLLGVVSQGQPTLVIM  107 (322)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTT-BCCEEEEECSSSSCEEEE
T ss_pred             eeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCC-EeeeEEEEccCCccEEEE
Confidence            356667787889999864310 0012467889987643211  111135666666664333 34566665432    889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|.++..       ...........-   .. .. ... ...+..+..                 .+...+..|.+.
T Consensus       108 e~~~~~~L~~-------~l~~~~~~~~~~---~~-~~-~~~-~~~~~~i~~-----------------qi~~~l~~lH~~  157 (322)
T 1p4o_A          108 ELMTRGDLKS-------YLRSLRPAMANN---PV-LA-PPS-LSKMIQMAG-----------------EIADGMAYLNAN  157 (322)
T ss_dssp             ECCTTCBHHH-------HHHHHHHHHHHC---TT-CC-CCC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             EeCCCCcHHH-------HHHHhchhhccC---CC-CC-CcC-HHHHHHHHH-----------------HHHHHHHHHHHC
Confidence            9999876542       122222111110   00 00 011 111222221                 122333344321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       158 --------~i~H~dikp~NIli~~~-~~~kl~Dfg~~~  186 (322)
T 1p4o_A          158 --------KFVHRDLAARNCMVAED-FTVKIGDFGMTR  186 (322)
T ss_dssp             --------TCBCSCCSGGGEEECTT-CCEEECCTTCCC
T ss_pred             --------CCccCCCccceEEEcCC-CeEEECcCcccc
Confidence                    38999999999999974 689999999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=97.68  E-value=8.5e-05  Score=67.09  Aligned_cols=138  Identities=15%  Similarity=0.091  Sum_probs=80.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---hHHHHHHHHHHHhCCCCceEEEEEC-C------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---RDDEIRTFECMSSQGQGPRLLGRFG-D------  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---r~~E~~~~~~l~~~gl~P~v~~~~~-~------  107 (267)
                      .-...|..|....||++....    .+..+.+|+.........+   ..+|+.+++.+.... ..+++.... .      
T Consensus        29 ~~~~~lG~G~~g~V~~a~~~~----~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-Iv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           29 IIKHLIGRGSYGYVYLAYDKN----TEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDY-IIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             EEEEEEEEETTEEEEEEEETT----TTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSCTTTCC
T ss_pred             EEEEEEeecCCEEEEEEEECC----CCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCC-cceEEEEEecCCCCcCC
Confidence            345667888889999998543    3578999987543211111   137888888885433 344555542 1      


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        .+|+||++| .+.              ..+.   . ..  .  .. ...+..+..+                 +...+
T Consensus       104 ~~~lv~e~~~~-~L~--------------~~~~---~-~~--~--l~-~~~~~~i~~q-----------------il~aL  142 (432)
T 3n9x_A          104 ELYIVLEIADS-DLK--------------KLFK---T-PI--F--LT-EEHIKTILYN-----------------LLLGE  142 (432)
T ss_dssp             CEEEEEECCSE-EHH--------------HHHH---S-SC--C--CC-HHHHHHHHHH-----------------HHHHH
T ss_pred             eEEEEEecCCc-CHH--------------HHHh---c-cC--C--CC-HHHHHHHHHH-----------------HHHHH
Confidence              277888775 221              1111   1 00  0  01 1122222222                 22333


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..|-+.        .++|+|++|+|||++.+ +.+.|+||..|..
T Consensus       143 ~~LH~~--------givHrDlkp~NILl~~~-~~~kL~DFGla~~  178 (432)
T 3n9x_A          143 NFIHES--------GIIHRDLKPANCLLNQD-CSVKVCDFGLART  178 (432)
T ss_dssp             HHHHHT--------TEECCCCCGGGEEECTT-CCEEECCCTTCEE
T ss_pred             HHHHHC--------CCCCCCCCHHHeEECCC-CCEEEccCCCccc
Confidence            444321        39999999999999874 6899999998864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.67  E-value=0.00011  Score=64.84  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccC-hHHHHHHHHHHHhCCCCceEEEEEC--C-----
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFN-RDDEIRTFECMSSQGQGPRLLGRFG--D-----  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~-----  107 (267)
                      .....|..|....||++....    .+..+++|+.......  ... ..+|+.+++.+...++. +++..+.  +     
T Consensus        45 ~~~~~lG~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           45 VSPTHVGSGAYGSVCSAIDKR----SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVI-GLLDVFTPASSLRNF  119 (371)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBC-CCSEEECSCSSSTTC
T ss_pred             EEEeEEecCCCeEEEEEEECC----CCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCch-hhhhheeccCCcccc
Confidence            345667888889999997543    3578999987543211  111 13677777777644433 3444432  1     


Q ss_pred             ---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 ---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         .++++|++|. +.              ..+    ...      .. ...+..+..                 .+...
T Consensus       120 ~~~~lv~e~~~~~-l~--------------~~~----~~~------~~-~~~~~~i~~-----------------qi~~a  156 (371)
T 4exu_A          120 YDFYLVMPFMQTD-LQ--------------KIM----GME------FS-EEKIQYLVY-----------------QMLKG  156 (371)
T ss_dssp             CCCEEEEECCCEE-HH--------------HHT----TSC------CC-HHHHHHHHH-----------------HHHHH
T ss_pred             eeEEEEEcccccc-HH--------------HHh----hcC------CC-HHHHHHHHH-----------------HHHHH
Confidence               3778888751 10              000    000      01 112222222                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +..|-+.        .++|+|++|.|||++++ +.+.|+||+.|.
T Consensus       157 L~~LH~~--------~ivH~Dikp~NIll~~~-~~~kL~Dfg~a~  192 (371)
T 4exu_A          157 LKYIHSA--------GVVHRDLKPGNLAVNED-CELKILDFGLAR  192 (371)
T ss_dssp             HHHHHHT--------TCCCSCCCGGGEEECTT-CCEEECSTTCC-
T ss_pred             HHHHHHC--------CCcCCCcCHHHeEECCC-CCEEEEecCccc
Confidence            3444321        38999999999999974 689999999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.67  E-value=8.2e-05  Score=64.19  Aligned_cols=29  Identities=21%  Similarity=0.214  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       146 ~ivH~dlkp~NIll~~~-~~~kl~Dfg~~~  174 (327)
T 3aln_A          146 KIIHRDIKPSNILLDRS-GNIKLCDFGISG  174 (327)
T ss_dssp             SCCCSCCCGGGEEEETT-TEEEECCCSSSC
T ss_pred             CEeECCCCHHHEEEcCC-CCEEEccCCCce
Confidence            48999999999999974 689999999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.66  E-value=0.0001  Score=63.20  Aligned_cols=135  Identities=12%  Similarity=0.070  Sum_probs=75.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--c-ccChHHHHHHHHHHHh-CCCCceEEEEECC-e---eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--V-FFNRDDEIRTFECMSS-QGQGPRLLGRFGD-G---RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~-~~dr~~E~~~~~~l~~-~gl~P~v~~~~~~-~---~v  110 (267)
                      -+..|..|....||++...     .+..+.+|+......  . .....+|+.+++.+.. +.-..+++....+ .   ++
T Consensus        32 ~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv  106 (313)
T 3cek_A           32 ILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV  106 (313)
T ss_dssp             EEEEEECCSSEEEEEEECT-----TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEecCCCCEEEEEEEcC-----CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEE
Confidence            3566778888999999743     257788998743321  1 1112478888988876 3334556665532 2   55


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +++ .|.++.              ..+.+-    .+    .+. .....+..                 .+...+..|-+
T Consensus       107 ~e~-~~~~L~--------------~~l~~~----~~----~~~-~~~~~i~~-----------------qi~~aL~~LH~  145 (313)
T 3cek_A          107 MEC-GNIDLN--------------SWLKKK----KS----IDP-WERKSYWK-----------------NMLEAVHTIHQ  145 (313)
T ss_dssp             ECC-CSEEHH--------------HHHHHC----SS----CCH-HHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             Eec-CCCcHH--------------HHHHhc----CC----CCH-HHHHHHHH-----------------HHHHHHHHHHH
Confidence            663 222221              111110    00    111 11112221                 12223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.||++++  +.+.|+||+.+.
T Consensus       146 --------~~ivH~dlkp~NIl~~~--~~~kL~Dfg~~~  174 (313)
T 3cek_A          146 --------HGIVHSDLKPANFLIVD--GMLKLIDFGIAN  174 (313)
T ss_dssp             --------TTCCCCCCCGGGEEEET--TEEEECCCSSSC
T ss_pred             --------CCceecCCCcccEEEEC--CeEEEeeccccc
Confidence                    13899999999999974  579999999875

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.65  E-value=0.00018  Score=62.40  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=76.2

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECC---eeEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGD---GRVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~---~~v~e  112 (267)
                      ..+..|..|....||++........-.-++++|....... .. ....+|+.+++.+..-++ +++++.+.+   ..+++
T Consensus        18 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~v~~   96 (327)
T 3lzb_A           18 KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-CRLLGICLTSTVQLITQ   96 (327)
T ss_dssp             EEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTB-CCCCEEEESSSEEEEEC
T ss_pred             eEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCe-eEEEEEEecCCceEEEE
Confidence            3467778888899999985431110112457776543321 11 111367777777754333 344554432   27788


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      +++|.++..              .+.   ....+    .. ...+..+..                 .+...+..|-+. 
T Consensus        97 ~~~~g~L~~--------------~l~---~~~~~----~~-~~~~~~i~~-----------------qi~~aL~~LH~~-  136 (327)
T 3lzb_A           97 LMPFGCLLD--------------YVR---EHKDN----IG-SQYLLNWCV-----------------QIAKGMNYLEDR-  136 (327)
T ss_dssp             CCSSCBHHH--------------HHH---HTTTC----CC-HHHHHHHHH-----------------HHHHHHHHHHHT-
T ss_pred             ecCCCcHHH--------------HHH---hcCCC----CC-HHHHHHHHH-----------------HHHHHHHHHhhC-
Confidence            888754321              111   10100    01 111222222                 122333344321 


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       137 -------~ivH~Dikp~NIl~~~~-~~~kL~DfG~a~  165 (327)
T 3lzb_A          137 -------RLVHRDLAARNVLVKTP-QHVKITDFGLAK  165 (327)
T ss_dssp             -------TCCCSCCCGGGEEEEET-TEEEECCTTC--
T ss_pred             -------CCcCCCCCHHHEEEcCC-CCEEEccCccee
Confidence                   38999999999999874 679999999885

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.65  E-value=0.00047  Score=59.10  Aligned_cols=138  Identities=13%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---hHHHHHHHHHHHhCCCCceEEEEECC-e---eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---RDDEIRTFECMSSQGQGPRLLGRFGD-G---RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---r~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~  111 (267)
                      .+..|..|....||++....    ++..+.+|+.........+   ...|...+..+..+.-.+++++.+.+ +   +|+
T Consensus        61 ~~~~LG~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           61 RLSRLGHGSYGEVFKVRSKE----DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eeheeccCCCeEEEEEEECC----CCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            45667888889999998653    3578999986543211111   12333333333334344566666542 2   789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||+.| .+.       ...       ... .  .+    .. ......+..+                 +...+..|-+ 
T Consensus       137 e~~~~-~L~-------~~~-------~~~-~--~~----l~-~~~~~~i~~q-----------------i~~aL~~LH~-  175 (311)
T 3p1a_A          137 ELCGP-SLQ-------QHC-------EAW-G--AS----LP-EAQVWGYLRD-----------------TLLALAHLHS-  175 (311)
T ss_dssp             ECCCC-BHH-------HHH-------HHH-C--SC----CC-HHHHHHHHHH-----------------HHHHHHHHHH-
T ss_pred             eccCC-CHH-------HHH-------Hhc-C--CC----CC-HHHHHHHHHH-----------------HHHHHHHHHH-
Confidence            99854 221       001       110 0  00    01 1122222221                 2233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|+|||++.+ +.+.|+||..|.
T Consensus       176 -------~~ivH~Dikp~NIll~~~-~~~kl~DFG~a~  205 (311)
T 3p1a_A          176 -------QGLVHLDVKPANIFLGPR-GRCKLGDFGLLV  205 (311)
T ss_dssp             -------TTEECCCCSGGGEEECGG-GCEEECCCTTCE
T ss_pred             -------CCEecCCCCHHHEEECCC-CCEEEccceeee
Confidence                   139999999999999874 689999998764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.64  E-value=4.3e-05  Score=69.92  Aligned_cols=137  Identities=16%  Similarity=0.107  Sum_probs=79.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cc-ccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~  111 (267)
                      ...|..|....||++....    .+..+.+|+.....   .. .....+|+.+++.+..-+ .++++..+.+ +   +|+
T Consensus        31 ~~~lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKI----TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN-IMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             eeEEecCCCEEEEEEEECC----CCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEEEEEE
Confidence            5567788889999998643    35789999864321   11 111146888887774333 3556666543 2   789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+..          .+       +..    .. .. ......+..                 .+...+..|-+.
T Consensus       106 e~~~~~~L~~----------~~-------~~~----~~-~~-~~~~~~i~~-----------------qi~~~l~~lH~~  145 (484)
T 3nyv_A          106 EVYTGGELFD----------EI-------ISR----KR-FS-EVDAARIIR-----------------QVLSGITYMHKN  145 (484)
T ss_dssp             CCCCSCBHHH----------HH-------HTC----SC-CB-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             ecCCCCCHHH----------HH-------Hhc----CC-CC-HHHHHHHHH-----------------HHHHHHHHHHHC
Confidence            9998765421          00       010    00 11 111222222                 122333444321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeC--CCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~--~~~~v~lIDwE~a~  229 (267)
                              .++|+|++|.|||++.  .++.+.|+||..|.
T Consensus       146 --------~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          146 --------KIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             --------TCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             --------CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence                    3899999999999952  23579999998763

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=97.64  E-value=8.6e-05  Score=68.05  Aligned_cols=138  Identities=15%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      -+..|..|....||++....    .+..+.+|+.....   .......+|+.+++.+..-++ ++++....+.    +|+
T Consensus        26 ~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-v~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           26 IVCMLGKGSFGEVLKCKDRI----TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI-MKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             EEEEEECCSSSEEEEEEETT----TCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEEE
T ss_pred             EeEEEeecCCEEEEEEEECC----CCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCc-CeEEEEEEcCCEEEEEE
Confidence            36677888889999998643    35789999863211   111112478888888854333 4556655322    789


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      +|++|..+..          .+.+      ...      .. ......+..                 .+...+..|-+ 
T Consensus       101 e~~~~~~L~~----------~~~~------~~~------~~-~~~~~~i~~-----------------qi~~al~~lH~-  139 (486)
T 3mwu_A          101 ELYTGGELFD----------EIIK------RKR------FS-EHDAARIIK-----------------QVFSGITYMHK-  139 (486)
T ss_dssp             CCCCSCBHHH----------HHHH------HSS------CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EcCCCCcHHH----------HHHh------cCC------CC-HHHHHHHHH-----------------HHHHHHHHHHH-
Confidence            9998865421          1110      000      01 111222222                 12233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++..  ++.+.|+||..|.
T Consensus       140 -------~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  172 (486)
T 3mwu_A          140 -------HNIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (486)
T ss_dssp             -------TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred             -------CCeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence                   138999999999999642  2469999999875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=97.64  E-value=0.00011  Score=69.04  Aligned_cols=139  Identities=15%  Similarity=0.029  Sum_probs=81.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .+..|..|....||++....    .+..|.+|+.....    .......+|..+++.+....+ .++++.+.+  .  +|
T Consensus       188 ~~~~LG~G~fG~Vy~a~~~~----tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I-v~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          188 QYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFV-VSLAYAYETKDALCLV  262 (576)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCE-eeEEEEEeeCCEEEEE
Confidence            35667778789999998643    35789999864321    011111368888887754333 445554432  2  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+.....      .. ......+..+                 +...++.|-+
T Consensus       263 mEy~~gg~L~~--------------~l~~~~~~~------l~-e~~~~~i~~q-----------------Il~aL~yLH~  304 (576)
T 2acx_A          263 LTLMNGGDLKF--------------HIYHMGQAG------FP-EARAVFYAAE-----------------ICCGLEDLHR  304 (576)
T ss_dssp             ECCCCSCBHHH--------------HHHSSSSCC------CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEcCCCCcHHH--------------HHHhcCCCC------CC-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876532              111111000      01 1122222221                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       305 ~--------gIvHrDLKPeNILld~~-g~vKL~DFGla~  334 (576)
T 2acx_A          305 E--------RIVYRDLKPENILLDDH-GHIRISDLGLAV  334 (576)
T ss_dssp             T--------TEECCCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             C--------CEeccCCchheEEEeCC-CCeEEEecccce
Confidence            1        39999999999999874 689999999874

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=97.63  E-value=7.2e-05  Score=65.49  Aligned_cols=158  Identities=15%  Similarity=0.104  Sum_probs=84.5

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc------c-----
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV------F-----   79 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~------~-----   79 (267)
                      ++..+..++.+.+.-.. .+     .-.-...|..|....||++...     .+..+++|+.......      .     
T Consensus         4 ~~~~~~~~~~~~~~~~~-~~-----~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~   72 (362)
T 3pg1_A            4 AKGEAAMRDLIAELHAM-QS-----PYTVQRFISSGSYGAVCAGVDS-----EGIPVAIKRVFNTVSDGRTVNILSDSFL   72 (362)
T ss_dssp             --CHHHHHHHHHHHHHT-TC-----SCEEEEEEEEETTEEEEEEECT-----TSCEEEEEEECEECCTTSCEEGGGSHHH
T ss_pred             CccHHHHHHHHHHHHHh-cc-----ceEEeEEeccCCCEEEEEEECC-----CCCeEEEEeccccCCccchhhhhhhhhH
Confidence            34445555555555221 11     2335677788888999999743     2578889876432110      0     


Q ss_pred             -cChHHHHHHHHHHHhCCCCceEEEEE-----CC----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC
Q 024452           80 -FNRDDEIRTFECMSSQGQGPRLLGRF-----GD----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR  149 (267)
Q Consensus        80 -~dr~~E~~~~~~l~~~gl~P~v~~~~-----~~----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~  149 (267)
                       ....+|+.+++.+..-++.+ ++..+     +.    .+|++|++|....               .+   +....+   
T Consensus        73 ~~~~~~E~~~l~~l~h~~iv~-~~~~~~~~~~~~~~~~~lv~e~~~~~l~~---------------~~---~~~~~~---  130 (362)
T 3pg1_A           73 CKRVLREIRLLNHFHHPNILG-LRDIFVHFEEPAMHKLYLVTELMRTDLAQ---------------VI---HDQRIV---  130 (362)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCC-CSEEEEECCTTTCCEEEEEEECCSEEHHH---------------HH---HCTTSC---
T ss_pred             HHHHHHHHHHHHhCCCcCccc-eeeeEEeccCCCcceEEEEEccCCCCHHH---------------HH---HhcccC---
Confidence             01146888888886444432 33322     11    2789998862111               01   111100   


Q ss_pred             CchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          150 KALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       150 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                       .. ...+..+..+                 +...+..|-+.        .++|+|++|.||+++.+ +.+.|+||+.|.
T Consensus       131 -~~-~~~~~~~~~q-----------------i~~~l~~lH~~--------~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~~~  182 (362)
T 3pg1_A          131 -IS-PQHIQYFMYH-----------------ILLGLHVLHEA--------GVVHRDLHPGNILLADN-NDITICDFNLAR  182 (362)
T ss_dssp             -CC-HHHHHHHHHH-----------------HHHHHHHHHHT--------TCCCCCCCGGGEEECTT-CCEEECCTTC--
T ss_pred             -CC-HHHHHHHHHH-----------------HHHHHHHHHHC--------cCEecCCChHHEEEcCC-CCEEEEecCccc
Confidence             11 1122223222                 22333444331        38999999999999874 689999999884

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.63  E-value=0.00027  Score=64.17  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=81.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE--CC-e--eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF--GD-G--RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~-~--~v~e~  113 (267)
                      -...|..|....||++...      +..+.+|+...... ...-.+|+.+++.+..-.+ .++++..  .+ .  +|+||
T Consensus       197 ~~~~lG~G~fg~V~~~~~~------~~~vavK~~~~~~~-~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          197 LLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDAT-AQAFLAEASVMTQLRHSNL-VQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             EEEEEEECSSEEEEEEEET------TEEEEEEEESSCTT-SHHHHHHHHHHHTCCCTTB-CCEEEEEECTTSCEEEEEEC
T ss_pred             EEeeecCcCCeeEEEEEec------CCeEEEEEeCCchH-HHHHHHHHHHHHhccCCCE-EEEEEEEEcCCCceEEEEEe
Confidence            3566778888999999753      46899998765431 1112478888888854343 3455543  22 2  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       ..       .+-..     . ... ...+..+..                 .+...+..|.+.  
T Consensus       269 ~~~g~L~~-------~l-------~~~~~-----~-~~~-~~~~~~~~~-----------------qi~~~l~~LH~~--  308 (450)
T 1k9a_A          269 MAKGSLVD-------YL-------RSRGR-----S-VLG-GDCLLKFSL-----------------DVCEAMEYLEGN--  308 (450)
T ss_dssp             CTTCBHHH-------HH-------HHHCT-----T-TCC-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             cCCCcHHH-------HH-------HhcCC-----C-CCC-HHHHHHHHH-----------------HHHHHHHHHHhC--
Confidence            99866532       11       11000     0 000 111222222                 122333444431  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.|||++++ +.+.|+||..|.
T Consensus       309 ------~ivHrDlkp~Nill~~~-~~~kl~DfG~a~  337 (450)
T 1k9a_A          309 ------NFVHRDLAARNVLVSED-NVAKVSDFGLTK  337 (450)
T ss_dssp             ------TEECSCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             ------CeeCCCCCHhhEEECCC-CCEEEeeCCCcc
Confidence                  39999999999999874 689999999774

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=97.62  E-value=6.9e-05  Score=62.47  Aligned_cols=139  Identities=13%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--c-ChHHHHHHHHHHHhCCCCceEEEEECC------e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--F-NRDDEIRTFECMSSQGQGPRLLGRFGD------G  108 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--~-dr~~E~~~~~~l~~~gl~P~v~~~~~~------~  108 (267)
                      .-...|..|....||++...      +..+++|+........  . ...+|+.+++.+. +.-..++++...+      .
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~------~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~~iv~~~~~~~~~~~~~~~   85 (271)
T 3kmu_A           13 NFLTKLNENHSGELWKGRWQ------GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFS-HPNVLPVLGACQSPPAPHPT   85 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEET------TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCS-CTTEECEEEEECTTTSSSCE
T ss_pred             HHHHHhcCCCcceEEEEEEC------CeeEEEEEecccccCHHHHHHHHHHHHHHHhcC-CCchhheEEEEccCCCCCeE
Confidence            34667788888999999853      4789999876432110  0 0123444444442 2122455665431      2


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      ++++|++|.++..              .+.   ....  .. .. ......+..+                 +...+..|
T Consensus        86 lv~e~~~~~~L~~--------------~l~---~~~~--~~-~~-~~~~~~i~~q-----------------i~~~l~~l  127 (271)
T 3kmu_A           86 LITHWMPYGSLYN--------------VLH---EGTN--FV-VD-QSQAVKFALD-----------------MARGMAFL  127 (271)
T ss_dssp             EEEECCTTCBHHH--------------HHH---SCSS--CC-CC-HHHHHHHHHH-----------------HHHHHHHH
T ss_pred             eeecccCCCcHHH--------------HHh---hccc--CC-CC-HHHHHHHHHH-----------------HHHHHHHH
Confidence            8899999865532              111   1100  00 01 1122222211                 22222333


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                      -      .....++|+|++|.||+++++ +.+.+.|++++
T Consensus       128 H------~~~~~i~H~dikp~Nil~~~~-~~~~l~~~~~~  160 (271)
T 3kmu_A          128 H------TLEPLIPRHALNSRSVMIDED-MTARISMADVK  160 (271)
T ss_dssp             T------TSSSCCTTCCCSGGGEEECTT-SCEEEEGGGSC
T ss_pred             h------cCCCceecCCCccceEEEcCC-cceeEEeccce
Confidence            2      122348999999999999874 67889888876

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.62  E-value=7.1e-05  Score=63.44  Aligned_cols=139  Identities=13%  Similarity=0.072  Sum_probs=77.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-cc-ChHHHHHHHHHHHhCCCCceEEEEEC--C---eeEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FF-NRDDEIRTFECMSSQGQGPRLLGRFG--D---GRVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~---~~v~e~  113 (267)
                      ..|..|....||++..... +.....+.+|+....... .. ...+|+.+++.+...++ .++++.+.  +   .++++|
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~~~v~e~  104 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQ-AQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV-LALIGIMLPPEGLPHVLLPY  104 (298)
T ss_dssp             EEEEEETTEEEEEEEEECS-SSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTB-CCCCEEECCSSSCCEEEECC
T ss_pred             ceeccCCCceEEEEEEecC-CCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCe-eeEEEEEecCCCCcEEEEec
Confidence            6678888899999975321 112236888887543221 11 11367777777754333 34455442  2   278888


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+..   ...    ... ...+..+..                 .+...+..|-+.  
T Consensus       105 ~~~~~L~~--------------~~~~---~~~----~~~-~~~~~~i~~-----------------qi~~~l~~LH~~--  143 (298)
T 3pls_A          105 MCHGDLLQ--------------FIRS---PQR----NPT-VKDLISFGL-----------------QVARGMEYLAEQ--  143 (298)
T ss_dssp             CTTCBHHH--------------HHHC---TTC----CCB-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             ccCCCHHH--------------HHhc---ccc----CCC-HHHHHHHHH-----------------HHHHHHHHHHhC--
Confidence            87754421              1111   000    011 112222222                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       144 ------~i~H~dikp~Nili~~~-~~~kl~Dfg~~~  172 (298)
T 3pls_A          144 ------KFVHRDLAARNCMLDES-FTVKVADFGLAR  172 (298)
T ss_dssp             ------TCCCSCCSGGGEEECTT-CCEEECCTTSSC
T ss_pred             ------CcccCCCCcceEEEcCC-CcEEeCcCCCcc
Confidence                  38999999999999874 689999999884

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.62  E-value=0.00017  Score=63.10  Aligned_cols=136  Identities=15%  Similarity=0.118  Sum_probs=75.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i~  115 (267)
                      ...|..|....||++....    .+..+.+|+....... -...+|+.+++.+...++ +++++.+.+  .  +|+||++
T Consensus        58 ~~~lG~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~-~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~  131 (349)
T 2w4o_A           58 ESELGRGATSIVYRCKQKG----TQKPYALKVLKKTVDK-KIVRTEIGVLLRLSHPNI-IKLKEIFETPTEISLVLELVT  131 (349)
T ss_dssp             EEEEEECSSEEEEEEEETT----TCCEEEEEEEEC-----------CHHHHHCCCTTB-CCEEEEEECSSEEEEEECCCC
T ss_pred             eeEEeeCCCEEEEEEEECC----CCcEEEEEEeccchhH-HHHHHHHHHHHhCCCCCC-cceeeeEecCCeEEEEEEeCC
Confidence            4567788889999998643    3578999987543211 111368888888864443 445555432  2  8899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++..              .+   ...    . ... ...+..+..                 .+...+..|-+.    
T Consensus       132 ~~~L~~--------------~l---~~~----~-~~~-~~~~~~i~~-----------------qi~~~L~~LH~~----  167 (349)
T 2w4o_A          132 GGELFD--------------RI---VEK----G-YYS-ERDAADAVK-----------------QILEAVAYLHEN----  167 (349)
T ss_dssp             SCBHHH--------------HH---TTC----S-SCC-HHHHHHHHH-----------------HHHHHHHHHHHT----
T ss_pred             CCCHHH--------------HH---Hhc----C-CCC-HHHHHHHHH-----------------HHHHHHHHHHHC----
Confidence            865531              01   000    0 001 111222222                 122333444321    


Q ss_pred             CCcEEEEccCCCCCCeeeeC--CCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~--~~~~v~lIDwE~a~  229 (267)
                          .++|+|++|.||+++.  +++.+.|+||+.+.
T Consensus       168 ----~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~  199 (349)
T 2w4o_A          168 ----GIVHRDLKPENLLYATPAPDAPLKIADFGLSK  199 (349)
T ss_dssp             ----TCCCCCCCGGGEEESSSSTTCCEEECCCC---
T ss_pred             ----CeEecCCCcccEEEecCCCCCCEEEccCcccc
Confidence                3899999999999974  23579999999875

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.62  E-value=6.1e-05  Score=64.16  Aligned_cols=137  Identities=14%  Similarity=0.115  Sum_probs=76.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-----cccChHHHHHHHHHHHhCCCCceEEEEE--CC----e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-----VFFNRDDEIRTFECMSSQGQGPRLLGRF--GD----G  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-----~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~----~  108 (267)
                      ...|..|....||++....    .+..+.+|+......     ......+|+.+++.+...+ ..++++..  .+    .
T Consensus        10 ~~~lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSE----TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKN-VIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTT----TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTT-BCCEEEEEECC---CEE
T ss_pred             eeEEecCCCeEEEEEEECC----CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCC-eeEEEEEEEcCCCCeEE
Confidence            3456677788999998543    357899998754210     0111136777777664333 34455543  22    2


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|. +.              ..+.......      .. ......+..                 .+...+..|
T Consensus        85 lv~e~~~~~-l~--------------~~~~~~~~~~------~~-~~~~~~~~~-----------------qi~~al~~L  125 (305)
T 2wtk_C           85 MVMEYCVCG-MQ--------------EMLDSVPEKR------FP-VCQAHGYFC-----------------QLIDGLEYL  125 (305)
T ss_dssp             EEEECCSEE-HH--------------HHHHHSTTCS------CC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEehhccCC-HH--------------HHHHhCcccc------cC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            889998864 11              1111111111      11 111222222                 122333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .+.        .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       126 H~~--------~i~H~dlkp~NIl~~~~-~~~kl~dfg~~~  157 (305)
T 2wtk_C          126 HSQ--------GIVHKDIKPGNLLLTTG-GTLKISALGVAE  157 (305)
T ss_dssp             HHT--------TEECSCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             HHC--------CeeecCCCcccEEEcCC-CcEEeecccccc
Confidence            321        39999999999999874 789999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=97.62  E-value=6e-05  Score=66.95  Aligned_cols=137  Identities=14%  Similarity=0.111  Sum_probs=73.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHH----H--hCCCCceEEEEECC--e--
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM----S--SQGQGPRLLGRFGD--G--  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l----~--~~gl~P~v~~~~~~--~--  108 (267)
                      -+..|..|....||++....    .+..|.+|+.....  ......+..++...    .  .+....++++.+.+  .  
T Consensus        42 ~~~~lG~G~fg~V~~~~~~~----~~~~~AiK~~~~~~--~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~  115 (373)
T 2r5t_A           42 FLKVIGKGSFGKVLLARHKA----EEVFYAVKVLQKKA--ILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY  115 (373)
T ss_dssp             EEEEEECCTTCEEEEEEETT----TCCEEEEEEEEGGG--BC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred             EEEEEeeCCCeEEEEEEEcC----CCCEEEEEEEEHHH--hhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence            45667888889999998643    35788999875432  11111122222211    1  11223456665542  2  


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|..+..              .+.+-.  ..      . ......+..                 .+...++.|
T Consensus       116 lv~E~~~gg~L~~--------------~l~~~~--~~------~-~~~~~~~~~-----------------qi~~aL~~L  155 (373)
T 2r5t_A          116 FVLDYINGGELFY--------------HLQRER--CF------L-EPRARFYAA-----------------EIASALGYL  155 (373)
T ss_dssp             EEEECCCSCBHHH--------------HHHHHS--SC------C-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEeCCCCCcHHH--------------HHHhcC--CC------C-HHHHHHHHH-----------------HHHHHHHHH
Confidence            8899999865531              111100  00      0 111222222                 122333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -+        ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       156 H~--------~givHrDlkp~NIll~~~-g~ikL~DFG~a~~  188 (373)
T 2r5t_A          156 HS--------LNIVYRDLKPENILLDSQ-GHIVLTDFGLCKE  188 (373)
T ss_dssp             HH--------TTCCCCCCCGGGEEECTT-SCEEECCCCBCGG
T ss_pred             HH--------CCceecCCCHHHEEECCC-CCEEEeeCccccc
Confidence            32        238999999999999874 6899999998753

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=97.61  E-value=0.00011  Score=63.91  Aligned_cols=140  Identities=11%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CcEEE-E-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC----C--
Q 024452           36 DALQV-I-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG----D--  107 (267)
Q Consensus        36 ~~~~i-~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~----~--  107 (267)
                      +...+ . .|..|....||++....    .+..+++|+.......    ..|......+..+--.++++....    +  
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~----~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~   99 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRR----TGQKCALKLLYDSPKA----RQEVDHHWQASGGPHIVCILDVYENMHHGKR   99 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEESSHHH----HHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEECC----CCCEEEEEEecCcHHH----HHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence            44555 4 47888889999998653    3578999987543211    233333322223323355555442    1  


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        .+|+||++|.++..              .+.+-..     . ... ...+..+..                 .+...+
T Consensus       100 ~~~lv~e~~~gg~L~~--------------~l~~~~~-----~-~l~-~~~~~~i~~-----------------ql~~~l  141 (336)
T 3fhr_A          100 CLLIIMECMEGGELFS--------------RIQERGD-----Q-AFT-EREAAEIMR-----------------DIGTAI  141 (336)
T ss_dssp             EEEEEEECCTTEEHHH--------------HHHTC-C-----C-CCB-HHHHHHHHH-----------------HHHHHH
T ss_pred             eEEEEEeccCCCCHHH--------------HHHhcCC-----C-CCC-HHHHHHHHH-----------------HHHHHH
Confidence              27899999865531              1111000     0 011 112222222                 222333


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                      ..|-+.        .++|+|++|.||+++.+  .+.+.|+||+.+.
T Consensus       142 ~~LH~~--------~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~  179 (336)
T 3fhr_A          142 QFLHSH--------NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK  179 (336)
T ss_dssp             HHHHHT--------TEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             HHHHhC--------CeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence            444321        39999999999999753  2348999999874

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=97.61  E-value=2.8e-05  Score=68.66  Aligned_cols=29  Identities=14%  Similarity=0.251  Sum_probs=25.8

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       214 ~ivHrDikp~NIll~~~-~~~kL~DFG~a~  242 (371)
T 3q60_A          214 GLVHGHFTPDNLFIMPD-GRLMLGDVSALW  242 (371)
T ss_dssp             TEEETTCSGGGEEECTT-SCEEECCGGGEE
T ss_pred             CCccCcCCHHHEEECCC-CCEEEEecceee
Confidence            39999999999999974 689999999874

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.60  E-value=0.00014  Score=61.62  Aligned_cols=146  Identities=14%  Similarity=0.048  Sum_probs=70.8

Q ss_pred             cEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEEC--C--eeE
Q 024452           37 ALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D--GRV  110 (267)
Q Consensus        37 ~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~--~~v  110 (267)
                      -.-...|..|....||++....    .+..+++|+...... ...+ ..+|+.+++.+..-+ .+++++.+.  +  .+|
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           17 YELQEVIGSGATAVVQAAYCAP----KKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN-IVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             CEEEEECC---CCCEEEEEC--------CEEEEECCC----------------CCCCCCCTT-BCCEEEEEESSSCEEEE
T ss_pred             hhhhheeccccceEEEEEEECC----CCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCC-EeeEEEEEeecCCcEEE
Confidence            3456677888889999997532    357899998754321 1111 124555554443222 245555543  2  288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|.++..       ...       .+...........+ ...+..+..                 .+...+..|.+
T Consensus        92 ~e~~~~~~L~~-------~l~-------~~~~~~~~~~~~~~-~~~~~~i~~-----------------qi~~~l~~lH~  139 (303)
T 2vwi_A           92 MKLLSGGSVLD-------IIK-------HIVAKGEHKSGVLD-ESTIATILR-----------------EVLEGLEYLHK  139 (303)
T ss_dssp             EECCTTCBHHH-------HHH-------HHHHTTTTTTCSSC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             ehhccCCchHH-------HHH-------HHhhccccccCCCC-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            99999876532       111       11111100000011 112222222                 12233334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeeccc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTF  228 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a  228 (267)
                              ..++|+|++|.||+++++ +.+.|+||+.+
T Consensus       140 --------~~i~H~dl~p~Nil~~~~-~~~kl~dfg~~  168 (303)
T 2vwi_A          140 --------NGQIHRDVKAGNILLGED-GSVQIADFGVS  168 (303)
T ss_dssp             --------TTCCCCCCSGGGEEECTT-CCEEECCCHHH
T ss_pred             --------CCCCCCCCChhhEEEcCC-CCEEEEeccch
Confidence                    138999999999999874 68999999866

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=97.59  E-value=0.00018  Score=65.32  Aligned_cols=140  Identities=13%  Similarity=0.068  Sum_probs=72.4

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccC---hHHHHHHHHHHHhCCCCceEEEEE-----C
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFN---RDDEIRTFECMSSQGQGPRLLGRF-----G  106 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~d---r~~E~~~~~~l~~~gl~P~v~~~~-----~  106 (267)
                      +..+ ...|..|....||++....    .+..+.+|+.........+   ..+|+.+++.+.. .-..+++..+     .
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~----~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~  127 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKL----EKRVVAIKKILRVFEDLIDCKRILREIAILNRLNH-DHVVKVLDIVIPKDVE  127 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC------CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC-TTBCCEEEECCCSCTT
T ss_pred             CCeEEeeEeeecCCeEEEEEEECC----CCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecCCcc
Confidence            3344 4456778889999997543    3578888876443211111   1368888888843 3334556554     1


Q ss_pred             C----eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHH
Q 024452          107 D----GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLK  182 (267)
Q Consensus       107 ~----~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  182 (267)
                      .    .+|+|+.+|.               +...+.   . ..  .  .. ...+..+..                 .+.
T Consensus       128 ~~~~~~lv~e~~~~~---------------L~~~~~---~-~~--~--l~-~~~~~~~~~-----------------qi~  166 (458)
T 3rp9_A          128 KFDELYVVLEIADSD---------------FKKLFR---T-PV--Y--LT-ELHIKTLLY-----------------NLL  166 (458)
T ss_dssp             TCCCEEEEECCCSEE---------------HHHHHH---S-SC--C--CC-HHHHHHHHH-----------------HHH
T ss_pred             cCceEEEEEeccccc---------------hhhhcc---c-CC--C--CC-HHHHHHHHH-----------------HHH
Confidence            1    1677776541               111111   1 00  0  01 112222222                 222


Q ss_pred             HHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          183 DEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       183 ~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..+..|-+.        .++|+|++|+|||++.+ +.+.|+||..|..
T Consensus       167 ~aL~~LH~~--------~iiHrDlKp~NILl~~~-~~~kl~DFGla~~  205 (458)
T 3rp9_A          167 VGVKYVHSA--------GILHRDLKPANCLVNQD-CSVKVCDFGLART  205 (458)
T ss_dssp             HHHHHHHHT--------TCBCCCCCGGGEEECTT-CCEEECCCTTCBC
T ss_pred             HHHHHHHhC--------CcCCCCCChhhEEECCC-CCEeecccccchh
Confidence            333444331        38999999999999974 6899999999864

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.59  E-value=6.3e-05  Score=65.20  Aligned_cols=73  Identities=12%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      .+..|..|....||++....    .+..+.+|+.......  . ....+|+.+++.+...++ .+++....  +.  +|+
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~  112 (329)
T 3gbz_A           38 RITKLGEGTYGEVYKAIDTV----TNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNI-IELKSVIHHNHRLHLIF  112 (329)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TTEEEEEEECCCCC--------CHHHHHHGGGCCCTTB-CCEEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCeEEEEEEECC----CCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCc-ceEEEEEecCCEEEEEE
Confidence            45677888889999997543    3578999987543211  1 112478888877744333 44555543  22  889


Q ss_pred             EeecC
Q 024452          112 EFIHA  116 (267)
Q Consensus       112 e~i~G  116 (267)
                      ||++|
T Consensus       113 e~~~~  117 (329)
T 3gbz_A          113 EYAEN  117 (329)
T ss_dssp             ECCSE
T ss_pred             ecCCC
Confidence            99886

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=97.58  E-value=7e-05  Score=65.51  Aligned_cols=136  Identities=13%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      -...|..|....||++....    .+..+.+|+.....   .... ...+|+.+++.+..-++ ++++..+.+  .  +|
T Consensus        13 i~~~lG~G~~g~V~~a~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYK----TQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHI-IKLYDVITTPTDIVMV   87 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTB-CCEEEEEECSSEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECC----CCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCC-CeEEEEEEeCCEEEEE
Confidence            45667788889999998643    35789999864321   1111 12468888777754333 455665532  2  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|...           ..+.+      ...      .. ......+..+                 +...+..+-+
T Consensus        88 ~E~~~g~l~-----------~~l~~------~~~------l~-~~~~~~i~~q-----------------i~~aL~~LH~  126 (336)
T 3h4j_B           88 IEYAGGELF-----------DYIVE------KKR------MT-EDEGRRFFQQ-----------------IICAIEYCHR  126 (336)
T ss_dssp             ECCCCEEHH-----------HHHHH------HCS------CC-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EECCCCcHH-----------HHHHH------cCC------CC-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            899855211           11110      000      01 1112222221                 2233344433


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.||+++++ +.+.|+||+.|.
T Consensus       127 ~--------givH~Dlkp~NIll~~~-~~~kl~DFG~s~  156 (336)
T 3h4j_B          127 H--------KIVHRDLKPENLLLDDN-LNVKIADFGLSN  156 (336)
T ss_dssp             H--------TCCCCCCSTTTEEECTT-CCEEECCSSCTB
T ss_pred             C--------CeEecCCchhhEEEcCC-CCEEEEEeccce
Confidence            2        38999999999999974 689999999774

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.57  E-value=0.00014  Score=68.85  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEeecC
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFIHA  116 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i~G  116 (267)
                      .|..|.-..||++......  .+..+.+|+.......  ...-.+|+.+++.+.. .-..++++.+.+.   +|+||++|
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~h-pniv~l~~~~~~~~~~lv~E~~~~  419 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDN-PYIVRLIGVCQAEALMLVMEMAGG  419 (613)
T ss_dssp             EEEECSSSEEEEEEEECSS--CEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCC-TTBCCEEEEEESSSEEEEEECCTT
T ss_pred             EEecCCCcEEEEEEEecCC--CcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCC-CCEeeEEEEeccCCeEEEEEeCCC
Confidence            4777888999998653211  2456889987654211  1112478888877743 2335566665432   88999998


Q ss_pred             CCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCC
Q 024452          117 RTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDH  196 (267)
Q Consensus       117 ~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  196 (267)
                      .++...              +   +....   . .. ...+..+..                 .+...+..|.+.     
T Consensus       420 g~L~~~--------------l---~~~~~---~-l~-~~~~~~i~~-----------------qi~~~L~~LH~~-----  455 (613)
T 2ozo_A          420 GPLHKF--------------L---VGKRE---E-IP-VSNVAELLH-----------------QVSMGMKYLEEK-----  455 (613)
T ss_dssp             CBHHHH--------------H---TTCTT---T-SC-HHHHHHHHH-----------------HHHHHHHHHHHT-----
T ss_pred             CcHHHH--------------H---hhccC---C-CC-HHHHHHHHH-----------------HHHHHHHHHHHC-----
Confidence            765320              1   11100   0 11 112222222                 222333444432     


Q ss_pred             CcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          197 QEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       197 ~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                         .++|+|++|.|||++++ +.+.|+||..|..
T Consensus       456 ---~iiHrDlkp~NILl~~~-~~vkL~DFGla~~  485 (613)
T 2ozo_A          456 ---NFVHRNLAARNVLLVNR-HYAKISDFGLSKA  485 (613)
T ss_dssp             ---TCCCSCCSGGGEEEEET-TEEEECCCSTTTT
T ss_pred             ---CEEcCcCCHHHEEEcCC-CcEEEeeccCccc
Confidence               38999999999999974 6799999998864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.57  E-value=0.00028  Score=62.35  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc--cC-hHHHHHHHHHHHhCCCCceEEEEEC--------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF--FN-RDDEIRTFECMSSQGQGPRLLGRFG--------  106 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~--~d-r~~E~~~~~~l~~~gl~P~v~~~~~--------  106 (267)
                      ..+..|..|....||++....    .+..+.+|+........  .. ..+|+.+++.+..-++ .+++..+.        
T Consensus        32 ~~~~~lG~G~~g~V~~a~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-v~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           32 QNLSPVGSGAYGSVCAAFDTK----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV-IGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EEEEECC----CCEEEEEETT----TTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTB-CCCSEEECSCSSGGGC
T ss_pred             EEeeEEeecCCeEEEEEEECC----CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCC-CcEEEEEecCCccccC
Confidence            346677888889999997543    35789999875432111  11 1368888887764333 33344331        


Q ss_pred             C--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          107 D--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       107 ~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      .  .+++++. |.++..       +..          ...      .. ...+..+..                 .+...
T Consensus       107 ~~~~lv~e~~-~~~L~~-------~~~----------~~~------l~-~~~~~~i~~-----------------qi~~a  144 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNN-------IVK----------CQK------LT-DDHVQFLIY-----------------QILRG  144 (367)
T ss_dssp             CCCEEEEECC-CEECC----------------------CC------CC-HHHHHHHHH-----------------HHHHH
T ss_pred             CeEEEEeccc-CCCHHH-------HHh----------cCC------CC-HHHHHHHHH-----------------HHHHH
Confidence            1  2667776 434432       010          000      01 111222222                 12233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +..|-+        ..++|+|++|.||+++++ +.+.|+||+.|..
T Consensus       145 L~~LH~--------~givH~Dlkp~NIll~~~-~~~kL~DFG~a~~  181 (367)
T 2fst_X          145 LKYIHS--------ADIIHRDLKPSNLAVNED-CELKILDFGLARH  181 (367)
T ss_dssp             HHHHHH--------TTCCCCCCCGGGEEECTT-CCEEECC------
T ss_pred             HHHHHH--------CCeeeCCCCHhhEEECCC-CCEEEeecccccc
Confidence            344432        138999999999999974 6899999998753

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.57  E-value=0.00038  Score=61.33  Aligned_cols=149  Identities=16%  Similarity=0.014  Sum_probs=81.0

Q ss_pred             EEEEecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECC----eeEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~  111 (267)
                      -+..|..|....||++..... ....+..+.+|+......  ......+|+.+++.+...+ ..++++.+.+    .+|+
T Consensus        75 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~lv~  153 (367)
T 3l9p_A           75 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN-IVRCIGVSLQSLPRFILL  153 (367)
T ss_dssp             EEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEEE
T ss_pred             EeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCCCEEEE
Confidence            356678888899999985321 111346788998754321  1112236777777774333 3456666543    2899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..              .+..-........ ... ...+..+..                 .+...+..|-+.
T Consensus       154 e~~~~g~L~~--------------~l~~~~~~~~~~~-~~~-~~~~~~i~~-----------------qi~~aL~~LH~~  200 (367)
T 3l9p_A          154 ELMAGGDLKS--------------FLRETRPRPSQPS-SLA-MLDLLHVAR-----------------DIACGCQYLEEN  200 (367)
T ss_dssp             ECCTTEEHHH--------------HHHHHSCCSSSCC-CCC-HHHHHHHHH-----------------HHHHHHHHHHHT
T ss_pred             EeCCCCCHHH--------------HHHhhccccCccc-ccc-HHHHHHHHH-----------------HHHHHHHHHHhC
Confidence            9999855431              1111111111000 111 112222222                 122333444321


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCC--CCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEET--SSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~--~~v~lIDwE~a~  229 (267)
                              .++|+|++|.|||++.++  ..+.|+||..|.
T Consensus       201 --------~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~  232 (367)
T 3l9p_A          201 --------HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR  232 (367)
T ss_dssp             --------TCCCSCCCGGGEEESCSSTTCCEEECCCHHHH
T ss_pred             --------CeeCCCCChhhEEEecCCCCceEEECCCcccc
Confidence                    389999999999998532  348999998774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.56  E-value=0.00016  Score=69.14  Aligned_cols=134  Identities=15%  Similarity=0.064  Sum_probs=77.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEEC---C------e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFG---D------G  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~---~------~  108 (267)
                      ...|..|....||++.....   ++..+++|+...... ... ...+|..+++.+..-+ .++++.++.   .      .
T Consensus        85 ~~~lg~G~~g~Vy~a~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~~~~~~  160 (681)
T 2pzi_A           85 KGCIAHGGLGWIYLALDRNV---NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPS-IVQIFNFVEHTDRHGDPVGY  160 (681)
T ss_dssp             EEEEEEETTEEEEEEEEGGG---TTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTT-BCCEEEEEEEECTTSCEEEE
T ss_pred             EEEEeeCCCeEEEEEEEcCC---CCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCC-cCeEeeeEeecCCCCCceeE
Confidence            45567777889999975321   247899998754321 111 1135666666654322 355565542   2      3


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++....                 +. .      .. ......+..+                 +...+..+
T Consensus       161 lv~E~~~g~~L~~~~-----------------~~-~------l~-~~~~~~~~~q-----------------i~~aL~~l  198 (681)
T 2pzi_A          161 IVMEYVGGQSLKRSK-----------------GQ-K------LP-VAEAIAYLLE-----------------ILPALSYL  198 (681)
T ss_dssp             EEEECCCCEECC---------------------C-C------CC-HHHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEeCCCCcHHHHH-----------------hC-C------CC-HHHHHHHHHH-----------------HHHHHHHH
Confidence            889999998775310                 00 0      01 1122223222                 22233344


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+        ..++|+|++|.|||+++  +.+.|+||..+.
T Consensus       199 H~--------~giiHrDlkp~NIll~~--~~~kl~DFG~a~  229 (681)
T 2pzi_A          199 HS--------IGLVYNDLKPENIMLTE--EQLKLIDLGAVS  229 (681)
T ss_dssp             HH--------TTEECCCCSGGGEEECS--SCEEECCCTTCE
T ss_pred             HH--------CCCeecccChHHeEEeC--CcEEEEecccch
Confidence            32        13999999999999986  379999999774

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=97.54  E-value=0.00017  Score=62.84  Aligned_cols=135  Identities=12%  Similarity=0.060  Sum_probs=77.3

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cc-cChHHHHHHHHHHHhC-CCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VF-FNRDDEIRTFECMSSQ-GQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~-~dr~~E~~~~~~l~~~-gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++...     .+..+.+|+......  .. ....+|+.+++.+..+ .-.++++..+.+.    +|
T Consensus        13 i~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv   87 (343)
T 3dbq_A           13 ILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV   87 (343)
T ss_dssp             EEEEESCCSSEEEEEEECT-----TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEecCCCeEEEEEEeC-----CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence            3567788888999999743     257788998653321  11 1124788999888764 3346677665432    66


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +|+. |..+.              ..+.+   . .+    .. ......+..                 .+...+..|-+
T Consensus        88 ~e~~-~~~L~--------------~~l~~---~-~~----~~-~~~~~~i~~-----------------qi~~al~~lH~  126 (343)
T 3dbq_A           88 MECG-NIDLN--------------SWLKK---K-KS----ID-PWERKSYWK-----------------NMLEAVHTIHQ  126 (343)
T ss_dssp             ECCC-SEEHH--------------HHHHH---S-CC----CC-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EeCC-CCCHH--------------HHHHh---c-CC----CC-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            6642 22211              11111   0 00    11 111222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.|||+++  +.+.|+||..|.
T Consensus       127 ~--------~iiHrDikp~NIll~~--~~~kl~DFG~a~  155 (343)
T 3dbq_A          127 H--------GIVHSDLKPANFLIVD--GMLKLIDFGIAN  155 (343)
T ss_dssp             T--------TCCCCCCCGGGEEEET--TEEEECCCSSSC
T ss_pred             C--------CeecCCCCcceEEEEC--CcEEEeeccccc
Confidence            1        3899999999999984  579999999874

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.53  E-value=0.00018  Score=68.39  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=80.6

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--c-cChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEee
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFI  114 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i  114 (267)
                      ..|..|....||++.....  ..+..+.+|+.......  . ....+|+++++.+..-. ..++++...+.   +|+||+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~--~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~l~~~~~~~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMK--KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY-IVRMIGICEAESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECS--SCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTT-BCCEEEEEESSSEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCC--CcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCEEEEEEcc
Confidence            3588888899999854321  12467889987543211  1 11247888888885433 34566665432   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .   ...     ... ...+..+..                 .+...+..|.+.   
T Consensus       452 ~~g~L~~-------~l-------~---~~~-----~l~-~~~~~~i~~-----------------qi~~~L~yLH~~---  488 (635)
T 4fl3_A          452 ELGPLNK-------YL-------Q---QNR-----HVK-DKNIIELVH-----------------QVSMGMKYLEES---  488 (635)
T ss_dssp             TTEEHHH-------HH-------H---HCT-----TCC-HHHHHHHHH-----------------HHHHHHHHHHHT---
T ss_pred             CCCCHHH-------HH-------h---hCC-----CCC-HHHHHHHHH-----------------HHHHHHHHHHHC---
Confidence            9865531       11       1   000     001 112222222                 222333444432   


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       489 -----~iiHrDLkp~NILl~~~-~~~kL~DFGla~  517 (635)
T 4fl3_A          489 -----NFVHRDLAARNVLLVTQ-HYAKISDFGLSK  517 (635)
T ss_dssp             -----TCCCSCCSGGGEEEEET-TEEEECCTTHHH
T ss_pred             -----CEeCCCCChHhEEEeCC-CCEEEEEcCCcc
Confidence                 38999999999999974 679999999774

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.48  E-value=0.00016  Score=63.47  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=78.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      .+..|..|....||++....    ++..+.+|+......   .. ....+|+.+++.+..-++ .++++.+.  +.  +|
T Consensus        58 ~~~~lG~G~~g~Vy~a~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-v~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           58 DLREIGHGSFGAVYFARDVR----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT-IQYRGCYLREHTAWLV  132 (348)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEEETTEEEEE
T ss_pred             eeeEEccCCCEEEEEEEEcc----CCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCE-eeEEEEEEECCeEEEE
Confidence            46678888889999997542    357888988653321   11 112468888877754333 34555442  22  88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|...        +..       .. +....      . ...+..+..                 .+...+..|-+
T Consensus       133 ~e~~~g~l~--------~~l-------~~-~~~~l------~-~~~~~~i~~-----------------qi~~aL~~LH~  172 (348)
T 1u5q_A          133 MEYCLGSAS--------DLL-------EV-HKKPL------Q-EVEIAAVTH-----------------GALQGLAYLHS  172 (348)
T ss_dssp             EECCSEEHH--------HHH-------HH-HTSCC------C-HHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             EecCCCCHH--------HHH-------HH-hcCCC------C-HHHHHHHHH-----------------HHHHHHHHHHh
Confidence            999976211        001       00 11110      1 111222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .        .++|+|++|.||+++++ +.+.|+||+.+.
T Consensus       173 ~--------~ivH~Dlkp~NIll~~~-~~~kL~DfG~a~  202 (348)
T 1u5q_A          173 H--------NMIHRDVKAGNILLSEP-GLVKLGDFGSAS  202 (348)
T ss_dssp             T--------TCBCCCCSGGGEEEETT-TEEEECCCTTCB
T ss_pred             C--------CeeeCCCCHHHEEECCC-CCEEEeeccCce
Confidence            1        38999999999999974 689999999874

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=97.47  E-value=0.00016  Score=63.77  Aligned_cols=135  Identities=19%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--C------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--D------  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~------  107 (267)
                      -+..|..|....||++....    .+..+.+|+......  ... ...+|+.+++.+..-. ..+++..+.  +      
T Consensus        29 ~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           29 NLKPIGSGAQGIVCAAYDAI----LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSCCSTTTCC
T ss_pred             EeeeeEecCCEEEEEEEECC----CCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCC-ccceEEeecccccccccc
Confidence            45667788889999997543    357888998754321  111 1136777777774333 344555542  1      


Q ss_pred             --eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHH
Q 024452          108 --GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEI  185 (267)
Q Consensus       108 --~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (267)
                        .+|+||++|. +          ...    +.   . ..      + ...+..+..                 .+...+
T Consensus       104 ~~~lv~e~~~~~-l----------~~~----~~---~-~~------~-~~~~~~i~~-----------------qi~~al  140 (371)
T 2xrw_A          104 DVYIVMELMDAN-L----------CQV----IQ---M-EL------D-HERMSYLLY-----------------QMLCGI  140 (371)
T ss_dssp             EEEEEEECCSEE-H----------HHH----HH---S-CC------C-HHHHHHHHH-----------------HHHHHH
T ss_pred             ceEEEEEcCCCC-H----------HHH----Hh---h-cc------C-HHHHHHHHH-----------------HHHHHH
Confidence              2789998762 1          111    10   0 00      1 111222222                 122333


Q ss_pred             HHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          186 SMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       186 ~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ..|-+        ..++|+|++|+||+++.+ +.+.|+||+.|..
T Consensus       141 ~~lH~--------~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          141 KHLHS--------AGIIHRDLKPSNIVVKSD-CTLKILDFGLART  176 (371)
T ss_dssp             HHHHH--------TTCCCSCCCGGGEEECTT-SCEEECCCCC---
T ss_pred             HHHHH--------CCeecccCCHHHEEEcCC-CCEEEEEeecccc
Confidence            44432        138999999999999974 6899999998753

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=97.47  E-value=0.00027  Score=63.81  Aligned_cols=82  Identities=11%  Similarity=-0.063  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCCc-EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEE
Q 024452           26 SDWGDVIDDSDA-LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGR  104 (267)
Q Consensus        26 p~w~~~~~~~~~-~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~  104 (267)
                      |.|....+  +. +....|..|....||.....     ++..+.+|.........  ..+|+++++.+.++.-..++++.
T Consensus         7 p~~~~~l~--~~~~~~~~LG~G~~g~V~~~~~~-----~g~~vAvK~~~~~~~~~--~~~E~~~l~~l~~HpnIv~~~~~   77 (434)
T 2rio_A            7 PNFEQSLK--NLVVSEKILGYGSSGTVVFQGSF-----QGRPVAVKRMLIDFCDI--ALMEIKLLTESDDHPNVIRYYCS   77 (434)
T ss_dssp             -CCSCSCS--SCEEEEEEEEECSTTCEEEEEES-----SSSEEEEEEEEGGGHHH--HHHHHHHHHHHTTSTTBCCEEEE
T ss_pred             cchhhhhh--heeeccCeEeeCCCeEEEEEEEE-----CCeEEEEEEEcHHHHHH--HHHHHHHHHhccCCCCcCeEEEE
Confidence            55554332  22 23456777777888765432     25789999764332111  14788888877655545566766


Q ss_pred             ECCe----eEEEeecC
Q 024452          105 FGDG----RVEEFIHA  116 (267)
Q Consensus       105 ~~~~----~v~e~i~G  116 (267)
                      ..+.    +++||++|
T Consensus        78 ~~~~~~~~lv~E~~~g   93 (434)
T 2rio_A           78 ETTDRFLYIALELCNL   93 (434)
T ss_dssp             EECSSEEEEEECCCSE
T ss_pred             EecCCeEEEEEecCCC
Confidence            5432    78899865

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=97.45  E-value=0.00041  Score=62.72  Aligned_cols=70  Identities=16%  Similarity=-0.011  Sum_probs=42.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v~e~i~  115 (267)
                      ...|..|....||.....     ++..+.+|...+.....  ..+|+++++.+.++--..+++....+    .+++||++
T Consensus        29 ~~~LG~G~~G~V~~~~~~-----~~~~vAvK~~~~~~~~~--~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  101 (432)
T 3p23_A           29 KDVLGHGAEGTIVYRGMF-----DNRDVAVKRILPECFSF--ADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA  101 (432)
T ss_dssp             EEEEEECGGGCEEEEEES-----SSSEEEEEEECTTTEEE--CHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCeeecCcCEEEEEEEEe-----CCeEEEEEEECHHHHHH--HHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence            345666666665543322     25789999875543222  24899999888655444556666532    27899987


Q ss_pred             C
Q 024452          116 A  116 (267)
Q Consensus       116 G  116 (267)
                      |
T Consensus       102 g  102 (432)
T 3p23_A          102 A  102 (432)
T ss_dssp             E
T ss_pred             C
Confidence            6

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=97.43  E-value=5.1e-05  Score=65.05  Aligned_cols=137  Identities=17%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccChHHHHHHHHHHHhCCCCceEEEEEC--C--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--D--  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--  107 (267)
                      +.++ ...|..|....||++...       +.+.+|+.....   .......+|+.+++.+...++ .++++...  +  
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~-------~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~  104 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWH-------GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENV-VLFMGACMSPPHL  104 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEES-------SSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTB-CCCCEEEECSSCE
T ss_pred             HHeEEeeEeccCCceEEEEEEEc-------CeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCE-eEEEEEEecCCce
Confidence            3344 455677888899999742       458888765332   111111367777777654343 33444432  2  


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                      .++++|++|.++...              +   +....+    .. ......+..                 .+...+..
T Consensus       105 ~iv~e~~~~~~L~~~--------------l---~~~~~~----~~-~~~~~~i~~-----------------qi~~al~~  145 (319)
T 2y4i_B          105 AIITSLCKGRTLYSV--------------V---RDAKIV----LD-VNKTRQIAQ-----------------EIVKGMGY  145 (319)
T ss_dssp             EEECBCCCSEEHHHH--------------T---TSSCCC----CC-SHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEeecccCCcHHHH--------------H---HhcCCC----CC-HHHHHHHHH-----------------HHHHHHHH
Confidence            278899888655320              0   111100    01 011222222                 12223334


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |.+.        .++|+|++|.||++++  +.+.|+||+.+.
T Consensus       146 lH~~--------~i~H~dlkp~NIl~~~--~~~~l~Dfg~~~  177 (319)
T 2y4i_B          146 LHAK--------GILHKDLKSKNVFYDN--GKVVITDFGLFS  177 (319)
T ss_dssp             HHHT--------TCCCCCCCSTTEEEC----CCEECCCSCCC
T ss_pred             HHhC--------CccccCCChhhEEEeC--CCEEEeecCCcc
Confidence            4321        3899999999999983  579999999754

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.35  E-value=9.2e-05  Score=65.65  Aligned_cols=139  Identities=15%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEE--CC---eeEEEe
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRF--GD---GRVEEF  113 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~--~~---~~v~e~  113 (267)
                      ..|..|....||++...... +....+.+|....... ... .-.+|+.+++.+..-++ .++++..  .+   .+|+||
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~~~~lv~e~  172 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV-LSLLGICLRSEGSPLVVLPY  172 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETT-TEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTB-CCCCEEECCCSSCCEEEEEC
T ss_pred             cEeeeCCCeEEEEEEEECCC-CcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCc-ceEEEEEEcCCCCeEEEEEC
Confidence            56788888999998753211 1123567777643221 111 11356666655543233 3445442  22   288999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..       .       +   +....    ... ...+..+..                 .+...+..|-+.  
T Consensus       173 ~~~g~L~~-------~-------l---~~~~~----~~~-~~~~~~i~~-----------------qi~~aL~~LH~~--  211 (373)
T 3c1x_A          173 MKHGDLRN-------F-------I---RNETH----NPT-VKDLIGFGL-----------------QVAKGMKFLASK--  211 (373)
T ss_dssp             CTTCBHHH-------H-------H---HCTTC----CCB-HHHHHHHHH-----------------HHHHHHHHHHHT--
T ss_pred             CCCCCHHH-------H-------H---hhccc----CCC-HHHHHHHHH-----------------HHHHHHHHHHHC--
Confidence            99865532       1       1   11000    011 112222222                 122333444321  


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            .++|+|++|.||+++++ +.+.|+||..|.
T Consensus       212 ------~ivHrDlkp~NIll~~~-~~~kL~DFG~a~  240 (373)
T 3c1x_A          212 ------KFVHRDLAARNCMLDEK-FTVKVADFGLAR  240 (373)
T ss_dssp             ------TCCCSCCCGGGEEECTT-CCEEECCC----
T ss_pred             ------CEecCccchheEEECCC-CCEEEeeccccc
Confidence                  38999999999999874 689999999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.00028  Score=61.65  Aligned_cols=137  Identities=14%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             EEEecCceeeeeEEEEeCCCCC----CCCceEEEEEcCCCcccccChHHHHHHHHHHHhC------------C--CCceE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNN----GLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ------------G--QGPRL  101 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~----~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~------------g--l~P~v  101 (267)
                      ...|..|....||++....+..    ..+..+++|+..... .+   .+|+.+++.+...            .  -.|++
T Consensus        47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~-~~---~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~  122 (352)
T 2jii_A           47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDG-RL---FNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTC  122 (352)
T ss_dssp             EEEEEEETTEEEEEEEECC-----------CEEEEEEETTS-TH---HHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCC
T ss_pred             EEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccc-hH---HHHHHHHHHhcccchhhhhhhhccCCccCccch
Confidence            4666778788999998643100    025789999875432 12   3677777665431            1  12455


Q ss_pred             EEEEC--Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCccccccc
Q 024452          102 LGRFG--DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEF  176 (267)
Q Consensus       102 ~~~~~--~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  176 (267)
                      ++...  +.   +|+||+ |.++..              .+.+-....      .. ...+..+..              
T Consensus       123 ~~~~~~~~~~~~lv~e~~-~~~L~~--------------~l~~~~~~~------l~-~~~~~~i~~--------------  166 (352)
T 2jii_A          123 MGFGVHQDKYRFLVLPSL-GRSLQS--------------ALDVSPKHV------LS-ERSVLQVAC--------------  166 (352)
T ss_dssp             CEEEEETTTEEEEEEECC-CEEHHH--------------HHHHSGGGC------CC-HHHHHHHHH--------------
T ss_pred             hhccccCCcEEEEEecCC-CcCHHH--------------HHHhCCcCC------CC-HHHHHHHHH--------------
Confidence            55442  22   889998 655432              111110000      01 111222222              


Q ss_pred             chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeeccc
Q 024452          177 CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTF  228 (267)
Q Consensus       177 ~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a  228 (267)
                         .+...+..|-+.        .++|+|++|.||+++++ +  .+.|+||..|
T Consensus       167 ---qi~~~L~~LH~~--------~ivH~Dikp~NIl~~~~-~~~~~kl~Dfg~a  208 (352)
T 2jii_A          167 ---RLLDALEFLHEN--------EYVHGNVTAENIFVDPE-DQSQVTLAGYGFA  208 (352)
T ss_dssp             ---HHHHHHHHHHHT--------TCBCSCCCGGGEEEETT-EEEEEEECCGGGC
T ss_pred             ---HHHHHHHHHHhC--------CccCCCCCHHHEEEcCC-CCceEEEecCcce
Confidence               122333444321        48999999999999974 4  6899999988

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.33  E-value=0.00064  Score=64.82  Aligned_cols=140  Identities=13%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~i  114 (267)
                      ...|..|....||++...... ..+..+.+|........ . ....+|+.+++.+..-+ ..++++...++   +|+||+
T Consensus       395 ~~~LG~G~fG~Vy~a~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~~~~~~~~~~lv~E~~  472 (656)
T 2j0j_A          395 GRCIGEGQFGDVHQGIYMSPE-NPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH-IVKLIGVITENPVWIIMELC  472 (656)
T ss_dssp             EEEEECCSSCCEEEEEECCSS-SCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSCEEEEECC
T ss_pred             eeEEeeCCCEEEEEEEEecCC-CccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEecCceEEEEEcC
Confidence            455778888999998764211 12356778876543211 1 11136777777774333 34566665433   889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|.++..       ..       .. +...      .. ......+..                 .+...+..|.+    
T Consensus       473 ~~g~L~~-------~l-------~~-~~~~------l~-~~~~~~i~~-----------------qi~~aL~~LH~----  509 (656)
T 2j0j_A          473 TLGELRS-------FL-------QV-RKFS------LD-LASLILYAY-----------------QLSTALAYLES----  509 (656)
T ss_dssp             TTCBHHH-------HH-------HH-TTTT------CC-HHHHHHHHH-----------------HHHHHHHHHHH----
T ss_pred             CCCcHHH-------HH-------Hh-ccCC------CC-HHHHHHHHH-----------------HHHHHHHHHHh----
Confidence            8765532       11       10 1100      01 111222222                 12233344432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||++.+ +.+.|+||+.|.
T Consensus       510 ----~givHrDikp~NILl~~~-~~vkL~DFG~a~  539 (656)
T 2j0j_A          510 ----KRFVHRDIAARNVLVSSN-DCVKLGDFGLSR  539 (656)
T ss_dssp             ----TTCCCSCCSGGGEEEEET-TEEEECCCCCCC
T ss_pred             ----CCccccccchHhEEEeCC-CCEEEEecCCCe
Confidence                148999999999999974 689999999875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.24  E-value=0.0015  Score=58.09  Aligned_cols=71  Identities=10%  Similarity=0.023  Sum_probs=40.2

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE--C-C-e--eEEEeec
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF--G-D-G--RVEEFIH  115 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~--~-~-~--~v~e~i~  115 (267)
                      .|..|....||++.....  ..+..+.+|+...... .....+|+.+++.+..-.+. +++..+  . + .  +|++|++
T Consensus        28 ~lG~G~~g~Vy~~~~~~~--~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv-~~~~~~~~~~~~~~~lv~e~~~  103 (405)
T 3rgf_A           28 KVGRGTYGHVYKAKRKDG--KDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVI-SLQKVFLSHADRKVWLLFDYAE  103 (405)
T ss_dssp             CCC-----EEEEEEESSS--SCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBC-CCCEEEEETTTTEEEEEEECCS
T ss_pred             EeeecCCeEEEEEEEccC--CCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCee-eEeeEEecCCCCeEEEEEeCCC
Confidence            477788899999985421  1357899998754321 11124799999888654443 233333  2 2 1  7899988


Q ss_pred             C
Q 024452          116 A  116 (267)
Q Consensus       116 G  116 (267)
                      |
T Consensus       104 ~  104 (405)
T 3rgf_A          104 H  104 (405)
T ss_dssp             E
T ss_pred             C
Confidence            6

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=97.23  E-value=0.0003  Score=61.58  Aligned_cols=54  Identities=15%  Similarity=0.063  Sum_probs=36.9

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ   95 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~   95 (267)
                      .-+..|..|....||++....    .+..+++|+............+|+.+++.+...
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~   75 (373)
T 1q8y_A           22 ILVRKLGWGHFSTVWLAKDMV----NNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDA   75 (373)
T ss_dssp             EEEEEEEECSSEEEEEEEETT----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeeecCCeEEEEEEecC----CCcEEEEEEecCCccchhhhhHHHHHHHHhhcc
Confidence            346677888889999998543    357899999765432111224788898888753

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.20  E-value=0.00087  Score=57.16  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.||+++.+ +.+.|+||+.+.
T Consensus       145 ~i~H~dlkp~Nil~~~~-~~~kl~dfg~~~  173 (318)
T 2dyl_A          145 GVIHRDVKPSNILLDER-GQIKLCDFGISG  173 (318)
T ss_dssp             CCCCCCCCGGGEEECTT-SCEEECCCTTC-
T ss_pred             CEEeCCCCHHHEEECCC-CCEEEEECCCch
Confidence            48999999999999874 689999999874

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.17  E-value=0.0023  Score=56.82  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=75.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--c-ccChHHHHHHHHHHHh-CCCCceEEEEECC--e--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--V-FFNRDDEIRTFECMSS-QGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~-~~dr~~E~~~~~~l~~-~gl~P~v~~~~~~--~--~v~  111 (267)
                      +..|..|....||++...     .+..+.+|+......  . .....+|+.+++.+.. +.-..+++.....  .  +|+
T Consensus        61 ~~~LG~G~fg~Vy~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           61 LKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEECCSSEEEEEEECT-----TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             EEEEccCCCeEEEEEEcC-----CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            456778888999999743     257888998643321  1 1112478999988875 3334566665432  2  677


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      |+ .|.++.              ..+.+-.  .      ... .....+..                 .+...+..|-+ 
T Consensus       136 E~-~~~~L~--------------~~l~~~~--~------~~~-~~~~~i~~-----------------qi~~aL~~lH~-  173 (390)
T 2zmd_A          136 EC-GNIDLN--------------SWLKKKK--S------IDP-WERKSYWK-----------------NMLEAVHTIHQ-  173 (390)
T ss_dssp             EC-CSEEHH--------------HHHHHCS--S------CCH-HHHHHHHH-----------------HHHHHHHHHHT-
T ss_pred             ec-CCCCHH--------------HHHHhcC--C------CCH-HHHHHHHH-----------------HHHHHHHHHHH-
Confidence            74 332221              1111110  0      111 11111221                 12223334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||+++  +.+.|+||..|.
T Consensus       174 -------~~ivHrDlkp~NIll~~--~~~kl~DFG~a~  202 (390)
T 2zmd_A          174 -------HGIVHSDLKPANFLIVD--GMLKLIDFGIAN  202 (390)
T ss_dssp             -------TTCCCCCCCGGGEEESS--SCEEECCCSSSC
T ss_pred             -------CCeeecCCCHHHEEEEC--CeEEEEecCccc
Confidence                   23899999999999963  579999999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.14  E-value=0.00039  Score=66.38  Aligned_cols=140  Identities=13%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEEC-------C---e
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFG-------D---G  108 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~-------~---~  108 (267)
                      ..|..|....||++....    .+..+++|+...... ... ...+|+.+++.+..-++. ++++...       +   .
T Consensus        20 ~~LG~G~fG~Vyla~~~~----tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV-~l~~v~~~~~~~~~~~~~~   94 (676)
T 3qa8_A           20 ERLGTGGFGYVLRWIHQD----TGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVV-SAREVPDGLQKLAPNDLPL   94 (676)
T ss_dssp             CCCCBCSSSBCCCCCCTT----TTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBC-CEEECCTTTCCCCTTSSCC
T ss_pred             EEEeeCCCeEEEEEEECC----CCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCC-ceeeeecccccccCCCeEE
Confidence            345677788999987432    357899998754321 111 114688888888544443 3444422       1   2


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|++|++|.++..              .+.+... ..+.. ..    .+..+..                 .+...+..|
T Consensus        95 LVmEy~~ggsL~~--------------~L~~~~~-~~~ls-e~----~i~~I~~-----------------QLl~aL~yL  137 (676)
T 3qa8_A           95 LAMEYCEGGDLRK--------------YLNQFEN-CCGLK-EG----PIRTLLS-----------------DISSALRYL  137 (676)
T ss_dssp             CEEECCSSCBHHH--------------HHHSSSC-TTCCC-SS----HHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEEeCCCCCHHH--------------HHHhccc-CCCCC-HH----HHHHHHH-----------------HHHHHHHHH
Confidence            8899998865531              1111100 00001 11    1222222                 122233344


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCC--CEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETS--SITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~--~v~lIDwE~a~~  230 (267)
                      -+        ..++|+|++|+||+++.+++  .+.|+||+.+..
T Consensus       138 Hs--------~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~  173 (676)
T 3qa8_A          138 HE--------NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE  173 (676)
T ss_dssp             HH--------TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCB
T ss_pred             HH--------CCCccCCCCHHHeEeecCCCceeEEEcccccccc
Confidence            32        13999999999999996432  278999998753

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=95.86  E-value=0.0031  Score=55.48  Aligned_cols=29  Identities=17%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|+|||++.+ +.+.|+||..|.
T Consensus       226 ~ivHrDikp~NIll~~~-~~~kL~DFG~a~  254 (377)
T 3byv_A          226 GLVHTYLRPVDIVLDQR-GGVFLTGFEHLV  254 (377)
T ss_dssp             TEECSCCCGGGEEECTT-CCEEECCGGGCE
T ss_pred             CeecCCCCHHHEEEcCC-CCEEEEechhhe
Confidence            39999999999999974 789999999875

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=95.44  E-value=0.0056  Score=54.73  Aligned_cols=29  Identities=17%  Similarity=0.303  Sum_probs=25.7

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       231 ~iiHrDiKp~NILl~~~-~~~kL~DFG~a~  259 (413)
T 3dzo_A          231 GLVHTYLRPVDIVLDQR-GGVFLTGFEHLV  259 (413)
T ss_dssp             TEECSCCCGGGEEECTT-CCEEECCGGGCE
T ss_pred             CcccCCcccceEEEecC-CeEEEEecccee
Confidence            49999999999999974 679999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1nw1a_	395	d.144.1.8 (A:) Choline kinase {Caenorhabditis eleg	9e-40
d2pula1	392	d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {	3e-06

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} Length = 395

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  139 bits (352), Expect = 9e-40
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 16/208 (7%)

Query: 24  VASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARN---VLVRIYGEGVEVFF 80
           +   W  V    + L++  +KG M+N ++          +      VL+R+Y    E   
Sbjct: 33  LGGAWKTV--PLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETES 89

Query: 81  NRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREF 140
           +   E   F  +S +  GP+L G F  GR+EE+I +R LS  +I    +S  +A ++ + 
Sbjct: 90  HLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKV 149

Query: 141 HDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKD---------AKEFCLYTLKDEISMLEK 190
           H L++P  ++   L + L++W+        A+                  L  E+  L  
Sbjct: 150 HQLEVPIWKEPDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRA 209

Query: 191 ELPNDHQEIGFCHNDLQYGNIMIDEETS 218
            +      + FCHNDLQ GNI++ + +S
Sbjct: 210 HISLSKSPVTFCHNDLQEGNILLPKASS 237

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} Length = 392

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 29/222 (13%), Positives = 56/222 (25%), Gaps = 37/222 (16%)

Query: 30  DVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARN---VLVRIYGEGVEVFFNRDD-E 85
            +      L    +     N V+ I     +  L         ++ GE   +  +R   E
Sbjct: 21  GLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE 80

Query: 86  IRTFECMSSQGQG--PRLLGRFGDGR--VEEFIHARTLSAADIRDP--------KISELV 133
                          PR+     +    V E +    ++   + +          I E +
Sbjct: 81  SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFL 140

Query: 134 AAKMREFHDLKMPGPRKALL-------------------WDRLRKWVSVAKSFCSAKDAK 174
              +    D  +    K  L                           +  +        K
Sbjct: 141 GKTLFYSSDYALEPKVKKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEK 200

Query: 175 EFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEE 216
            +   ++K E + L+K      +     H DL  G+I   E 
Sbjct: 201 LWNNDSVKIEAAKLKKSFLTSAE--TLIHGDLHTGSIFASEH 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	100.0
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	99.9
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	99.89
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	99.88
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	99.86
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	99.85
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.84
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.71
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	98.67
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.5
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.47
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.44
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	98.38
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.37
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.35
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.33
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	98.33
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.32
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.28
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	98.28
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	98.26
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.26
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	98.25
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	98.23
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.23
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.2
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	98.18
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.17
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.15
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	98.15
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	98.14
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.11
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.11
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.1
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	98.09
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	98.09
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.04
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.04
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.04
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	98.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	97.98
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	97.94
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.93
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	97.92
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.89
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	97.88
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	97.86
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.85
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	97.83
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	97.83
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	97.77
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.76
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.73
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	97.7
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.69
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	97.68
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	97.68
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	97.67
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	97.65
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	97.61
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	97.56
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	97.53
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	97.3
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	97.15
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	96.82

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.1e-36  Score=271.73  Aligned_cols=223  Identities=25%  Similarity=0.394  Sum_probs=183.1

Q ss_pred             hHHHHHHHHHhC-CCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCC---CCCCceEEEEEcCCCcccccChHHHHHHH
Q 024452           14 PEELKKVLQSVA-SDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN---NGLARNVLVRIYGEGVEVFFNRDDEIRTF   89 (267)
Q Consensus        14 ~~~~~~l~~~~~-p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~---~~~~~~~vlRi~~~~~~~~~dr~~E~~~~   89 (267)
                      .+.+..+|++++ |.|+++.  .+.+++++++||+||.+|+|+.+...   ...+.++++|+++ ++...+||.+|..++
T Consensus        22 ~~~~~~~~~~~l~~~W~~~~--~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~~idr~~E~~i~   98 (395)
T d1nw1a_          22 KERAHMLCARFLGGAWKTVP--LEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETESHLVAESVIF   98 (395)
T ss_dssp             HHHHHHHHHHHHCTHHHHCC--GGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccCCC--ccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-CcchhhHHHHHHHHH
Confidence            366888999976 6798875  48899999999999999999975321   0135789999998 455678999999999


Q ss_pred             HHHHhCCCCceEEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC-CchhHHHHHHHHHHHhhcc
Q 024452           90 ECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-KALLWDRLRKWVSVAKSFC  168 (267)
Q Consensus        90 ~~l~~~gl~P~v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~-~~~~~~~l~~~~~~~~~~~  168 (267)
                      +.|++.|++|++++.+++|+|++|++|++++..++.++.+...+|+.|++||....+... .+..++.+.+|...+....
T Consensus        99 ~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~~~~~~~i~~~l~~~~~~~  178 (395)
T d1nw1a_          99 TLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYLCEALQRWLKQLTGTV  178 (395)
T ss_dssp             HHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCCCeEEEEcCCceEEEEeccccCChhhccchhhhHHHHHHHHHHhhcccccccCcchHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999998999999999999999999998876543 3467788999988765332


Q ss_pred             Ccc---------cccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeC------------------------
Q 024452          169 SAK---------DAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE------------------------  215 (267)
Q Consensus       169 ~~~---------~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~------------------------  215 (267)
                      ...         .........+.++++++++.+.....+.|+||||++++|||+.+                        
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (395)
T d1nw1a_         179 DAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSA  258 (395)
T ss_dssp             CTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------------------------
T ss_pred             hHHHhhhhhhhhccccccHHHHHHHHHHHHHHhhcccCCeeEEecCCCcccEeecccccccccccccccccccccccccc
Confidence            111         01122456788899999999887888999999999999999854                        


Q ss_pred             ---CCCCEEEEeecccCcchHhHHHHh
Q 024452          216 ---ETSSITIIVSFTFLQNMLNFKRAC  239 (267)
Q Consensus       216 ---~~~~v~lIDwE~a~~~~~~fD~A~  239 (267)
                         +++.+.+||||||++|+++||+|.
T Consensus       259 ~~~~~~~l~lID~EYa~~n~~~fDian  285 (395)
T d1nw1a_         259 FNPADPRLVLIDFEYASYNYRAFDFAN  285 (395)
T ss_dssp             ------CCEECCCTTCEEEEHHHHHHH
T ss_pred             ccCCCCcEEEEeecccCCCcchhhHHH
Confidence               235799999999999999999884

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=99.90  E-value=3e-23  Score=173.82  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=135.4

Q ss_pred             CcEEEEEecCceee-eeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCC-CceEEEEECC-e---e
Q 024452           36 DALQVIPLKGAMTN-EVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQ-GPRLLGRFGD-G---R  109 (267)
Q Consensus        36 ~~~~i~~l~~G~~N-~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl-~P~v~~~~~~-~---~  109 (267)
                      ...+++++.+|.+| .+|+++..     .+.++|+|+...+...  +...|.+++++|+..|+ +|++++...+ +   +
T Consensus        11 ~g~~~~~~~~G~s~~~v~r~~~~-----~~~~~vlK~~~~~~~~--~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~   83 (255)
T d1nd4a_          11 FGYDWAQQTIGCSDAAVFRLSAQ-----GRPVLFVKTDLSGALN--ELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWL   83 (255)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECT-----TSCCEEEEEECSCTTS--CHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEE
T ss_pred             cCCceEEcCCcccCCeEEEEEeC-----CCCEEEEEeCCccCHh--HHHHHHHHHHHHHhcCCCCCceeeecccccceEE
Confidence            44688999999987 67999853     2568999998665432  34689999999999997 6999987542 2   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC-CchhHHHHHHHHHHHhhccCcc-cc-cccchhhHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR-KALLWDRLRKWVSVAKSFCSAK-DA-KEFCLYTLKDEIS  186 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~  186 (267)
                      |++||+|+++.......+....++|+.|++||+.+.+... .......+..+........... .. ...........+.
T Consensus        84 v~~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (255)
T d1nd4a_          84 LLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFA  163 (255)
T ss_dssp             EEECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHH
T ss_pred             EEEeeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHH
Confidence            9999999998876666677889999999999998764322 1112222333322222111110 00 1111122344445


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhh
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACT  240 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~  240 (267)
                      .+.... ....+.++||||++++|||+++ ++.++|||||.+++|++.||+|.+
T Consensus       164 ~l~~~~-~~~~~~~liHgD~~~~Nvl~~~-~~~~~iID~~~~~~g~~~~Dla~~  215 (255)
T d1nd4a_         164 RLKARM-PDGEDLVVTHGDACLPNIMVEN-GRFSGFIDCGRLGVADRYQDIALA  215 (255)
T ss_dssp             HHHHTC-CSSCCEEEECSSCCGGGEEEET-TEEEEECCCTTCEEEETHHHHHHH
T ss_pred             HHHHhC-CccCCceEEeCCCCCcceEEeC-CceEEEEEchhcccCCHHHHHHHH
Confidence            555443 2456789999999999999996 345689999999999999997753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=4.7e-22  Score=167.13  Aligned_cols=195  Identities=16%  Similarity=0.125  Sum_probs=126.9

Q ss_pred             EEEEecCceee-eeEEEEeCCCCCCCCceEEEEEcCCCcc-cccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEE
Q 024452           39 QVIPLKGAMTN-EVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N-~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e  112 (267)
                      ++...++|.+| .+|+|+.      +++++++|+...... ...+..+|.+++++|++.+.+|++++...  +.  +|++
T Consensus        17 ~~~~~~~G~s~~~v~rv~~------~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~   90 (263)
T d1j7la_          17 RCVKDTEGMSPAKVYKLVG------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS   90 (263)
T ss_dssp             EEEECSCCCSSSEEEEEEC------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEe------CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEE
Confidence            45556667665 7899974      257899998765432 23455789999999988777899998753  22  8999


Q ss_pred             eecCCCCCcc---cCCChHHHHHHHHHHHhhccCCCCCCCCc-hhHHHHHHHHHHHhhccCccc----ccccchhhHHHH
Q 024452          113 FIHARTLSAA---DIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKD----AKEFCLYTLKDE  184 (267)
Q Consensus       113 ~i~G~~l~~~---~l~~~~i~~~la~~La~lH~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~l~~~  184 (267)
                      +++|.++...   ......++.++|+.+++||+...+..... .....+...............    ........+.+.
T Consensus        91 ~l~G~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (263)
T d1j7la_          91 EADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPREL  170 (263)
T ss_dssp             CCSSEEHHHHTTTCSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHH
T ss_pred             ecccccccccccccccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHH
Confidence            9999876432   22224578899999999999876542211 111222222111111111100    011112344444


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHHHhhhh
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKRACTKI  242 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~A~~~~  242 (267)
                      ...+.+..  ...+.++||||++++|||+++ ++.++|||||+|++|++.||+|.+-.
T Consensus       171 ~~~l~~~~--~~~~~~l~HgD~~~~Nil~~~-~~~~~lIDwe~a~~g~~~~Dla~~~~  225 (263)
T d1j7la_         171 YDFLKTEK--PEEELVFSHGDLGDSNIFVKD-GKVSGFIDLGRSGRADKWYDIAFCVR  225 (263)
T ss_dssp             HHHHHHSC--CCCCEEEECSCCCTTSEEEET-TEEEEECCCTTCEEEEHHHHHHHHHH
T ss_pred             HHHHHhcC--CcCCcEEEEeeccCcceeecC-CceEEEeechhcccCCHHHHHHHHHH
Confidence            55555443  355789999999999999996 34457999999999999999875443

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=4.4e-22  Score=177.63  Aligned_cols=228  Identities=13%  Similarity=0.066  Sum_probs=142.0

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC-------cccccCh-
Q 024452           11 SSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG-------VEVFFNR-   82 (267)
Q Consensus        11 ~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~-------~~~~~dr-   82 (267)
                      .-.++++.+++..+ +.|.+    ...+++++|++|..|.+|+|+...    .+.++|+|...+.       .....+| 
T Consensus         7 ~Lt~~~~~~la~~l-g~~~~----~~~l~~~eig~G~~N~vfrV~~~~----~~~svivKqa~p~~r~~g~~~~~~~~R~   77 (392)
T d2pula1           7 TLNESSAVALAVKL-GLFPS----KSTLTCQEIGDGNLNYVFHIYDQE----HDRALIIKQAVPYAKVVGESWPLTIDRA   77 (392)
T ss_dssp             CCCHHHHHHHHHHT-TC---------CCEEEECCSSSSEEEEEEEC--------CEEEEEEECCGGGC--CCCCCCTTHH
T ss_pred             cCCHHHHHHHHHHc-CCCCC----CCCeeEEEeCCCceEeEEEEEeCC----CCeEEEEecCCchhcccCCCCCCCHHHH
Confidence            34578888888765 55553    367899999999999999998542    2578999876442       2234566 


Q ss_pred             HHHHHHHHHHHhC--CCCceEEEEECCe--eEEEeecCCCCCc----ccCCChHHHHHHHHHHHhhccCCCCCCCCch-h
Q 024452           83 DDEIRTFECMSSQ--GQGPRLLGRFGDG--RVEEFIHARTLSA----ADIRDPKISELVAAKMREFHDLKMPGPRKAL-L  153 (267)
Q Consensus        83 ~~E~~~~~~l~~~--gl~P~v~~~~~~~--~v~e~i~G~~l~~----~~l~~~~i~~~la~~La~lH~~~~~~~~~~~-~  153 (267)
                      ..|+++++.++..  +.+|++++.+++.  +++||++|..+..    .....+....++|+.|+++|.........+. .
T Consensus        78 ~~E~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~  157 (392)
T d2pula1          78 RIESSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVK  157 (392)
T ss_dssp             HHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHH
T ss_pred             HHHHHHHHHhhhhCCCCcceEEEEcCCCCEEEEeccCCcccchhhhcccchhHHHHHHHHHHHHHHHHHhccccccchhh
Confidence            4699999999886  4689999998743  8999999876532    1223356788899999999976543221111 1


Q ss_pred             H--------HHHHHHHHHHhhccC--ccccccc------------chhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCe
Q 024452          154 W--------DRLRKWVSVAKSFCS--AKDAKEF------------CLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNI  211 (267)
Q Consensus       154 ~--------~~l~~~~~~~~~~~~--~~~~~~~------------~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Ni  211 (267)
                      .        ..+.+|.........  ......+            ....+...+..+...+.  ..+.+|||||+|+|||
T Consensus       158 ~~~~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~--~~~~~LiHGDl~~gNI  235 (392)
T d2pula1         158 KQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFL--TSAETLIHGDLHTGSI  235 (392)
T ss_dssp             HHHHHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHH--HBCCEEECSCCCGGGE
T ss_pred             cccccccccHHHHHHHHhhhcchHHHHHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHhhcc--cCCcceeccCCcCCce
Confidence            0        112222221111100  0000000            01223334444443332  4567999999999999


Q ss_pred             eeeCCCCCEEEEeecccCcchHhHHHHh-hhhhheeeeccC
Q 024452          212 MIDEETSSITIIVSFTFLQNMLNFKRAC-TKILLILTFSVN  251 (267)
Q Consensus       212 lv~~~~~~v~lIDwE~a~~~~~~fD~A~-~~~~~~~~~~~~  251 (267)
                      |++++  .++|||||+|.+|+++||++. +..+++.+++..
T Consensus       236 lv~~~--~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~  274 (392)
T d2pula1         236 FASEH--ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRD  274 (392)
T ss_dssp             EECSS--CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSC
T ss_pred             eEcCC--ceEEechhhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence            99863  689999999999999999554 444455666643

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.86  E-value=5.4e-21  Score=165.28  Aligned_cols=232  Identities=13%  Similarity=0.097  Sum_probs=141.1

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHH
Q 024452           12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFEC   91 (267)
Q Consensus        12 ~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~   91 (267)
                      .+.+++..++..+ +    +   ++..+++++.+|.+|+||+|++.      +++||+|++.++.. .-+.+.|.+++.+
T Consensus         3 ls~~el~~~l~~Y-~----l---g~~~~~~~i~~G~~N~ny~v~t~------~g~yVLri~~~~~~-~~~l~~~~~~l~~   67 (316)
T d2ppqa1           3 ITEDELRNFLTQY-D----V---GSLTSYKGIAEGVENSNFLLHTT------KDPLILTLYEKRVE-KNDLPFFLGLMQH   67 (316)
T ss_dssp             CCHHHHHHHHTTB-C----C---CCEEEEEEECC---EEEEEEEES------SCCEEEEEECC----CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhC-C----C---CCceEeecCCCCcccCeEEEEEC------CCcEEEEEcCCCCC-HHHHHHHHHHHHh
Confidence            3567777777664 2    2   25678999999999999999864      47899999976532 1122578999999


Q ss_pred             HHhCCCC-ceEEEEECC----------eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCC---CchhHHHH
Q 024452           92 MSSQGQG-PRLLGRFGD----------GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPR---KALLWDRL  157 (267)
Q Consensus        92 l~~~gl~-P~v~~~~~~----------~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~---~~~~~~~l  157 (267)
                      |++.|++ |.++....+          +.++.+++|......   +......+|..++++|........   .......+
T Consensus        68 L~~~g~pvp~pi~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (316)
T d2ppqa1          68 LAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRKP---EAKHCREVGKALAAMHLASEGFEIKRPNALSVDGW  144 (316)
T ss_dssp             HHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBCCSSC---CHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHH
T ss_pred             hhhccccccccceecCCCcceeeecccceeeeeccccccccc---chhHHHHHHHHHHhhhhhhhhcccccccccchhhc
Confidence            9999974 655543211          156788888766542   356688999999999998654321   11122222


Q ss_pred             HHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcchHhHHH
Q 024452          158 RKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNMLNFKR  237 (267)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~~~fD~  237 (267)
                      ..+...........  .......+....+.+.... ....+.++||||++++||+++++ +..+|||||+|+++++.||+
T Consensus       145 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~-~~~L~~giIHgDl~~dNvl~~~~-~v~gvIDF~~~~~~~~~~DL  220 (316)
T d2ppqa1         145 KVLWDKSEERADEV--EKGLREEIRPEIDYLAAHW-PKDLPAGVIHADLFQDNVFFLGD-ELSGLIDFYFACNDLLAYDV  220 (316)
T ss_dssp             HHHHHHHGGGGGGT--STTHHHHHHHHHHHHHHHC-CCSSCEEEECSCCCGGGEEEETT-EEEEECCCTTCEEEEHHHHH
T ss_pred             chhhhHHHHhhhhc--chhHHHHHHHHHHhhhccC-ccccccccccCCcchhhhhcccc-cceeEecccccccchhhhhH
Confidence            22222222111110  0011233444444444432 35789999999999999999963 45689999999999999996


Q ss_pred             Hhhh-hhheeeeccCCchhHhHHHHHHhh
Q 024452          238 ACTK-ILLILTFSVNSPMVCMRWLRILCL  265 (267)
Q Consensus       238 A~~~-~~~~~~~~~~~~~~~~~~~~~~~~  265 (267)
                      |.+- +.++...........--.+++|+-
T Consensus       221 Ai~~~~~~~~~~~~~~~~~~~afl~GY~~  249 (316)
T d2ppqa1         221 SICLNAWCFEKDGAYNVTKGKALLEGYQS  249 (316)
T ss_dssp             HHHHHHHSBCTTSCBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHHHh
Confidence            6432 322322222222233345666653

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.3e-21  Score=166.38  Aligned_cols=228  Identities=15%  Similarity=0.044  Sum_probs=141.4

Q ss_pred             CCCChHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHH
Q 024452           10 PSSSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTF   89 (267)
Q Consensus        10 ~~~~~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~   89 (267)
                      .+-+|+.+.+-+.+. .-+.+       -.+.++ +|..|.||+|+..     ++.+||+|++.++....-....|.+++
T Consensus         6 ~~L~pd~i~~al~~~-g~~~~-------~~~~~L-~s~EN~vy~v~~~-----dg~~~VlK~~rp~~~s~~~i~~E~~~l   71 (325)
T d1zyla1           6 QTLHPDTIMDALFEH-GIRVD-------SGLTPL-NSYENRVYQFQDE-----DRRRFVVKFYRPERWTADQILEEHQFA   71 (325)
T ss_dssp             CCCCHHHHHHHHHHT-TCCCC-------SCCEEE-CCSSSEEEEECCT-----TCCCEEEEEECTTTSCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHc-CCCCC-------cCcccc-ccccceeEEEEcC-----CCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            355688888887776 33332       134555 5889999999753     357899999987632211224799999


Q ss_pred             HHHHhCCCC-ceEEEEEC------Ce---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCC--C--CchhH-
Q 024452           90 ECMSSQGQG-PRLLGRFG------DG---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP--R--KALLW-  154 (267)
Q Consensus        90 ~~l~~~gl~-P~v~~~~~------~~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~--~--~~~~~-  154 (267)
                      ..|++.|++ |.++....      ++   .+++|++|+.+..   .+++.++++|+.|++||.......  .  ..+.. 
T Consensus        72 ~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~---~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~  148 (325)
T d1zyla1          72 LQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEA---DNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNE  148 (325)
T ss_dssp             HHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCS---SCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHH
T ss_pred             HHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCCCC---CCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHH
Confidence            999999974 55444321      12   6799999988754   356779999999999999754322  1  11221 


Q ss_pred             --HHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcch
Q 024452          155 --DRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQNM  232 (267)
Q Consensus       155 --~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~~  232 (267)
                        .....|....  .....+........+....+.+.... ....+.++||||+|++|||+++   ...+||||+|++|+
T Consensus       149 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~p~~liHgDlh~~NvL~~~---~~~~IDFdd~~~g~  222 (325)
T d1zyla1         149 YLIEPRKLFEDA--TLIPSGLKAAFLKATDELIAAVTAHW-REDFTVLRLHGDCHAGNILWRD---GPMFVDLDDARNGP  222 (325)
T ss_dssp             HTHHHHHHHHTC--SSSCTTTHHHHHHHHHHHHHHHHHHC-CSCSCCEECCSSCSGGGEEESS---SEEECCCTTCCEEC
T ss_pred             HhhhhHHHHHHc--CcCCHHHHHHHHHHHHHHHHHHHHhc-cccCCceeecCCCCcccEEEeC---CceEEechhcccCc
Confidence              1222222111  01011100001122333344444443 2456789999999999999974   35799999999999


Q ss_pred             HhHHHHhhhhhheeeeccCCchhHhHHHHHHh
Q 024452          233 LNFKRACTKILLILTFSVNSPMVCMRWLRILC  264 (267)
Q Consensus       233 ~~fD~A~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (267)
                      +.||+|+    ++++...+.+...-.|+.+|.
T Consensus       223 ~~~DLa~----~l~~~~~~~~~~~~~~l~GY~  250 (325)
T d1zyla1         223 AVQDLWM----LLNGDKAEQRMQLETIIEAYE  250 (325)
T ss_dssp             TTHHHHT----TCCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH----hccccccCHHHHHHHHHHHHH
Confidence            9999886    233332222222234677775

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.84  E-value=1.7e-08  Score=79.52  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc---------cC----------hHHHHHHHHHHHhCCC-Cce
Q 024452           41 IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF---------FN----------RDDEIRTFECMSSQGQ-GPR  100 (267)
Q Consensus        41 ~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~---------~d----------r~~E~~~~~~l~~~gl-~P~  100 (267)
                      .+|..|....||++...     +++.+.+|+...+...+         .+          ...|...+..+.  ++ .|.
T Consensus         6 ~~IG~G~~g~Vy~a~~~-----~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~--~~~v~~   78 (191)
T d1zara2           6 KLMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--GLAVPK   78 (191)
T ss_dssp             EEEEECSSEEEEEEEET-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--TSSSCC
T ss_pred             CEeeeCcceEEEEEECC-----CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHcc--CCCcce
Confidence            56778888999999753     35789999875432110         00          012344444332  33 477


Q ss_pred             EEEEECCeeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhh
Q 024452          101 LLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYT  180 (267)
Q Consensus       101 v~~~~~~~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
                      .+......++++|++|.....-.                       ..   .    ...+..                 .
T Consensus        79 ~~~~~~~~lvme~~~~~~~~~l~-----------------------~~---~----~~~i~~-----------------q  111 (191)
T d1zara2          79 VYAWEGNAVLMELIDAKELYRVR-----------------------VE---N----PDEVLD-----------------M  111 (191)
T ss_dssp             EEEEETTEEEEECCCCEEGGGCC-----------------------CS---C----HHHHHH-----------------H
T ss_pred             EEEecCCEEEEEeeccccccchh-----------------------hH---H----HHHHHH-----------------H
Confidence            88777667999999985432110                       00   0    001111                 1


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          181 LKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       181 l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +...+..|-+        ..++|+|++|+|||+++  +.+.+|||..|.
T Consensus       112 l~~~l~~lH~--------~giiHrDiKP~NILv~~--~~~~liDFG~a~  150 (191)
T d1zara2         112 ILEEVAKFYH--------RGIVHGDLSQYNVLVSE--EGIWIIDFPQSV  150 (191)
T ss_dssp             HHHHHHHHHH--------TTEECSCCSTTSEEEET--TEEEECCCTTCE
T ss_pred             HHHHHHHHhh--------CCEEEccCChhheeeeC--CCEEEEECCCcc
Confidence            2222233322        23999999999999995  368999999774

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.71  E-value=2.8e-08  Score=84.80  Aligned_cols=138  Identities=18%  Similarity=0.140  Sum_probs=87.3

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC---Ce---
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG---DG---  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~---~~---  108 (267)
                      +..+ +..|..|...+||++....    .+..|.+|+........  ..+|+++++.+..+.-..+++..+.   +.   
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~----~~~~vAiK~i~~~~~~~--~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~  108 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINIT----NNEKVVVKILKPVKKKK--IKREIKILENLRGGPNIITLADIVKDPVSRTPA  108 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEECSSCHHH--HHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECC----CCCEEEEEEECHHHHHH--HHHHHHHHHhccCCCCCcEEEEEEEecCCCcee
Confidence            3344 5677888889999998543    35788899875433221  2479999999986655567776652   22   


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|++|++|..+...                  ++ .      .. ...+..+..                 .+...++.|
T Consensus       109 ~v~e~~~~~~L~~~------------------~~-~------l~-e~~i~~i~~-----------------qil~aL~~L  145 (328)
T d3bqca1         109 LVFEHVNNTDFKQL------------------YQ-T------LT-DYDIRFYMY-----------------EILKALDYC  145 (328)
T ss_dssp             EEEECCCSCBGGGT------------------TT-S------CC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEeecCCCcHHHH------------------hc-C------CC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            78999988665321                  00 0      00 111222222                 223333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -+        ..++|+|++|.|||++.+++.+.++||..|..
T Consensus       146 H~--------~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         146 HS--------MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             HH--------TTEECCCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred             hh--------cccccccccccceEEcCCCCeeeeccccccee
Confidence            32        23899999999999987545689999998853

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.67  E-value=7.9e-08  Score=80.25  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc---------ccC-hHHHHHHHHHHHhCCCCceEEEEECCe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV---------FFN-RDDEIRTFECMSSQGQGPRLLGRFGDG  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~---------~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~  108 (267)
                      -...|..|....||++....    ++..|.+|+.......         ..+ ..+|+.+++.+..+.-..++++.+.+.
T Consensus         7 ~~~~iG~G~~g~V~~~~~~~----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           7 PKEILGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             EceEEecCcCeEEEEEEECC----CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            35667888889999998543    3578889876433211         111 136888999998776666777776532


Q ss_pred             ----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          109 ----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       109 ----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                          +|+||++|..+..       .       +..  ....       .......|..+                 +...
T Consensus        83 ~~~~ivmE~~~~g~L~~-------~-------l~~--~~~l-------~e~~~~~~~~q-----------------i~~a  122 (277)
T d1phka_          83 TFFFLVFDLMKKGELFD-------Y-------LTE--KVTL-------SEKETRKIMRA-----------------LLEV  122 (277)
T ss_dssp             SEEEEEEECCTTCBHHH-------H-------HHH--HSSC-------CHHHHHHHHHH-----------------HHHH
T ss_pred             cceEEEEEcCCCchHHH-------H-------HHh--cCCC-------CHHHHHHHHHH-----------------HHHH
Confidence                8999999876542       1       110  1111       11233334332                 2233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.|-+        ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       123 l~~lH~--------~~ivHrDlkp~Nill~~~-~~~kl~DFG~a~~  159 (277)
T d1phka_         123 ICALHK--------LNIVHRDLKPENILLDDD-MNIKLTDFGFSCQ  159 (277)
T ss_dssp             HHHHHH--------TTEECSCCSGGGEEECTT-CCEEECCCTTCEE
T ss_pred             HHHHHH--------cCCcccccccceEEEcCC-CCeEEccchheeE
Confidence            344432        139999999999999874 6899999988853

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-07  Score=78.20  Aligned_cols=158  Identities=17%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCcEEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHH
Q 024452           14 PEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECM   92 (267)
Q Consensus        14 ~~~~~~l~~~~~p~w~~~~~~~~~~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l   92 (267)
                      .+++.+-+++.++. .+.  ...-.-+..|..|....||++....    ++..|.+|+....... .-...+|+++++.+
T Consensus         2 d~~~~~~l~~~~~~-~dp--~~~Y~~~~~iG~G~fg~Vy~a~~~~----~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l   74 (293)
T d1yhwa1           2 DEEILEKLRSIVSV-GDP--KKKYTRFEKIGQGASGTVYTAMDVA----TGQEVAIRQMNLQQQPKKELIINEILVMREN   74 (293)
T ss_dssp             HHHHHHHHHHHSBS-SCT--TTTBCSCEECCCSSSCEEEEEEBTT----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhccCCC-CCc--ccccEEEEEEecCcCcEEEEEEECC----CCCEEEEEEEecccChHHHHHHHHHHHHHhC
Confidence            35666667776532 110  0122346778888889999998543    3578999986432211 11124788888888


Q ss_pred             HhCCCCceEEEEEC--Ce--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhcc
Q 024452           93 SSQGQGPRLLGRFG--DG--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFC  168 (267)
Q Consensus        93 ~~~gl~P~v~~~~~--~~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~  168 (267)
                      ..-. ..++++.+.  +.  +|+||++|..+..           +   +   +....     +  ......+..+     
T Consensus        75 ~Hpn-Iv~~~~~~~~~~~~~ivmEy~~gg~L~~-----------~---~---~~~~l-----~--~~~~~~i~~q-----  124 (293)
T d1yhwa1          75 KNPN-IVNYLDSYLVGDELWVVMEYLAGGSLTD-----------V---V---TETCM-----D--EGQIAAVCRE-----  124 (293)
T ss_dssp             CCTT-BCCEEEEEEETTEEEEEEECCTTCBHHH-----------H---H---HHSCC-----C--HHHHHHHHHH-----
T ss_pred             CCCC-EeeEeEEEEECCEEEEEEEecCCCcHHH-----------H---h---hccCC-----C--HHHHHHHHHH-----
Confidence            5433 345565543  32  8999999876531           1   1   11111     0  1123333322     


Q ss_pred             CcccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          169 SAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                  +...++.|-+        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       125 ------------i~~aL~yLH~--------~~iiHrDiKp~NILl~~~-~~vkl~DFG~a~  164 (293)
T d1yhwa1         125 ------------CLQALEFLHS--------NQVIHRDIKSDNILLGMD-GSVKLTDFGFCA  164 (293)
T ss_dssp             ------------HHHHHHHHHH--------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             ------------HHHHHHHHHH--------CCCcccCCcHHHeEECCC-CcEeeccchhhe
Confidence                        2233344432        239999999999999874 689999999885

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.50  E-value=1.6e-07  Score=81.03  Aligned_cols=140  Identities=15%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEe
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEF  113 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~  113 (267)
                      -+..|..|....||++....    .+..|.+|+....... .....+|+.+++.+..-+ ..+++..+.+  .  +||||
T Consensus        33 i~~~lG~G~fg~V~~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          33 ILEELGSGAFGVVHRCVEKA----TGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK-LINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             EEEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT-BCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEecCCCeEEEEEEECC----CCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEEc
Confidence            35667888889999998543    3578999976543211 111136888887774333 3456666542  2  89999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++...                 +.+...   . .+ ...+..+..+                 +...++.+-+   
T Consensus       108 ~~gg~L~~~-----------------~~~~~~---~-l~-e~~~~~i~~q-----------------i~~aL~ylH~---  145 (352)
T d1koba_         108 LSGGELFDR-----------------IAAEDY---K-MS-EAEVINYMRQ-----------------ACEGLKHMHE---  145 (352)
T ss_dssp             CCCCBHHHH-----------------TTCTTC---C-BC-HHHHHHHHHH-----------------HHHHHHHHHH---
T ss_pred             CCCChHHHH-----------------HHhcCC---C-CC-HHHHHHHHHH-----------------HHHHHHHHHH---
Confidence            999765311                 111000   0 01 1122223322                 2233344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeC-CCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDE-ETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~-~~~~v~lIDwE~a~~  230 (267)
                           ..++|+|++|.|||++. +.+.+.|+||..|..
T Consensus       146 -----~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~  178 (352)
T d1koba_         146 -----HSIVHLDIKPENIMCETKKASSVKIIDFGLATK  178 (352)
T ss_dssp             -----TTEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred             -----CCeeecccccccccccccCCCeEEEeeccccee
Confidence                 24899999999999973 236799999998853

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.7e-07  Score=76.56  Aligned_cols=141  Identities=18%  Similarity=0.201  Sum_probs=84.1

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEE
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVE  111 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~  111 (267)
                      +.++ ...|..|.-..||++...+     +..+.+|....+....-.-.+|+.+++.+..-.+ .++++...++   +|+
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnI-v~~~g~~~~~~~~iv~   86 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRL-VRLYAVVTQEPIYIIT   86 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-CCEEEEECSSSCEEEE
T ss_pred             HHeEEeEEEecCCCcEEEEEEECC-----CCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCE-eEEEeeeccCCeEEEE
Confidence            4455 4567778889999998642     4678889876543221112488999888854333 4567765433   899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+...- ...             +...      .+ +.....+..                 .+.+.+..|-+ 
T Consensus        87 Ey~~~g~L~~~~-~~~-------------~~~~------l~-~~~~~~i~~-----------------qi~~gl~~lH~-  127 (272)
T d1qpca_          87 EYMENGSLVDFL-KTP-------------SGIK------LT-INKLLDMAA-----------------QIAEGMAFIEE-  127 (272)
T ss_dssp             ECCTTCBHHHHT-TSH-------------HHHT------CC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EeCCCCcHHHHH-hhc-------------CCCC------CC-HHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            999987654210 000             0000      00 111112221                 12233334432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++++ +.+.|.||..|.
T Consensus       128 -------~~ivHrDiKp~NIll~~~-~~~Kl~DFGla~  157 (272)
T d1qpca_         128 -------RNYIHRDLRAANILVSDT-LSCKIADFGLAR  157 (272)
T ss_dssp             -------TTEECSCCSGGGEEECTT-SCEEECCCTTCE
T ss_pred             -------CCcccCccchhheeeecc-cceeeccccceE
Confidence                   238999999999999974 689999999885

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.5e-07  Score=74.71  Aligned_cols=136  Identities=18%  Similarity=0.127  Sum_probs=82.6

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~  113 (267)
                      ++.|..|....||++....    ++..|.+|+.....  .....-.+|+++++.+..-. ..+++..+.  +.  +|+||
T Consensus        10 ~~~lG~G~fg~V~~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_          10 VQTLGEGAYGEVQLAVNRV----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEEEECC-------CHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEecCcCeEEEEEEECC----CCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCC-EeeEeeeeccCceeEEEEec
Confidence            5667788889999998643    35788899864432  11112257888888875433 345666543  22  88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++... +..                    ... .+ ......+..+                 +...++.|-+   
T Consensus        85 ~~gg~L~~~-l~~--------------------~~~-l~-e~~~~~i~~q-----------------i~~al~ylH~---  121 (271)
T d1nvra_          85 CSGGELFDR-IEP--------------------DIG-MP-EPDAQRFFHQ-----------------LMAGVVYLHG---  121 (271)
T ss_dssp             CTTEEGGGG-SBT--------------------TTB-CC-HHHHHHHHHH-----------------HHHHHHHHHH---
T ss_pred             cCCCcHHHH-Hhc--------------------CCC-CC-HHHHHHHHHH-----------------HHHHHHHHHH---
Confidence            998776431 100                    000 01 1122223322                 2333344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           ..++|+|++|.|||++++ +.+.|+||..|.
T Consensus       122 -----~~IiHrDiKp~NILl~~~-~~~KL~DFG~a~  151 (271)
T d1nvra_         122 -----IGITHRDIKPENLLLDER-DNLKISDFGLAT  151 (271)
T ss_dssp             -----TTEECSCCCGGGEEECTT-CCEEECCCTTCE
T ss_pred             -----cCCccCcccHHHEEECCC-CCEEEccchhhe
Confidence                 239999999999999874 689999999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=98.38  E-value=4.4e-07  Score=78.11  Aligned_cols=138  Identities=17%  Similarity=0.129  Sum_probs=82.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccc-cChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVF-FNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFI  114 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i  114 (267)
                      +..|..|.-..||++....    .+..|.+|+.......- ....+|+.+++.+.. --..++++.+.  +.  +|+||+
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~----~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~H-pnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          31 HEELGTGAFGVVHRVTERA----TGNNFAAKFVMTPHESDKETVRKEIQTMSVLRH-PTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             EEEEEEETTEEEEEEEETT----TTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCC-TTBCCEEEEEEETTEEEEEECCC
T ss_pred             EEEEecCcCeEEEEEEECC----CCCEEEEEEEcccchhhHHHHHHHHHHHHhCCC-CCCCcEEEEEEECCEEEEEEEcC
Confidence            4667778889999998543    35788899875432111 111478888888853 33345666543  22  889999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..              .+   +...   .. . ....+..+..+                 +...++.|-+    
T Consensus       106 ~gg~L~~--------------~l---~~~~---~~-l-~e~~~~~i~~q-----------------i~~aL~ylH~----  142 (350)
T d1koaa2         106 SGGELFE--------------KV---ADEH---NK-M-SEDEAVEYMRQ-----------------VCKGLCHMHE----  142 (350)
T ss_dssp             CSCBHHH--------------HH---TCTT---SC-B-CHHHHHHHHHH-----------------HHHHHHHHHH----
T ss_pred             CCCCHHH--------------HH---Hhhc---CC-C-CHHHHHHHHHH-----------------HHHHHHHHHh----
Confidence            9876532              01   1100   00 1 11223333322                 2233344432    


Q ss_pred             CCCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~  229 (267)
                          ..++|+|++|.|||++.+ .+.+.|+||..|.
T Consensus       143 ----~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~  174 (350)
T d1koaa2         143 ----NNYVHLDLKPENIMFTTKRSNELKLIDFGLTA  174 (350)
T ss_dssp             ----TTEECCCCCGGGEEESSTTSCCEEECCCTTCE
T ss_pred             ----cCCeeeeechhHeeeccCCCCeEEEeecchhe
Confidence                248999999999999642 3578999999875

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.1e-07  Score=73.99  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=86.3

Q ss_pred             cEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           37 ALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        37 ~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      ..+ +..|..|....||++....    .+..+.+|+....... .-...+|+++++.+..-.+ .++++.+.  +.  +|
T Consensus        13 ~Y~i~~~iG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~~~lv   87 (288)
T d2jfla1          13 FWEIIGELGDGAFGKVYKAQNKE----TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI-VKLLDAFYYENNLWIL   87 (288)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTB-CCEEEEEEETTEEEEE
T ss_pred             CeEEeEEEeeCCCcEEEEEEECC----CCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCC-CeEEEEEeeCCeEEEE
Confidence            344 6778888889999998643    3578889987543322 2223589999988854333 34565543  32  89


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..       +       +.+.+.   +.    . ......+..+                 +...+..+-+
T Consensus        88 mEy~~~g~L~~-------~-------~~~~~~---~l----~-e~~~~~i~~q-----------------i~~gL~ylH~  128 (288)
T d2jfla1          88 IEFCAGGAVDA-------V-------MLELER---PL----T-ESQIQVVCKQ-----------------TLDALNYLHD  128 (288)
T ss_dssp             EECCTTEEHHH-------H-------HHHHTS---CC----C-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EecCCCCcHHH-------H-------HHhcCC---CC----C-HHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876532       1       111111   00    0 1122223222                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       129 --------~~ivHrDiKp~NIll~~~-~~~Kl~DFG~a~~  159 (288)
T d2jfla1         129 --------NKIIHRDLKAGNILFTLD-GDIKLADFGVSAK  159 (288)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTCEE
T ss_pred             --------CCEEEeecChhheeECCC-CCEEEEechhhhc
Confidence                    139999999999999974 6899999998864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.1e-07  Score=76.16  Aligned_cols=146  Identities=11%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEE--C-Ce---eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRF--G-DG---RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~--~-~~---~v  110 (267)
                      ++.|..|....||++....    ++..|.+|+......  .... ..+|+++++.+..-. ..+++...  . ++   +|
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN-IVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             EEEEEECSSEEEEEEEETT----TCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTT-BCCEEEEEEC----CEEEE
T ss_pred             eEEEecCCCeEEEEEEECC----CCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCC-EeeEEEEEEeCCCCEEEEE
Confidence            5667777789999998643    357888998654321  1111 135666666554322 34455543  2 22   78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..           +.....+-+. ..       ....+..+..+                 +...++.+-+
T Consensus        84 mEy~~~g~L~~-----------~i~~~~~~~~-~l-------~e~~~~~i~~q-----------------i~~al~ylH~  127 (269)
T d2java1          84 MEYCEGGDLAS-----------VITKGTKERQ-YL-------DEEFVLRVMTQ-----------------LTLALKECHR  127 (269)
T ss_dssp             EECCTTEEHHH-----------HHHHHHHHTC-CC-------CHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EecCCCCcHHH-----------HHHhccccCC-CC-------CHHHHHHHHHH-----------------HHHHHHHHHH
Confidence            99999876532           1111111000 00       01122223322                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .   ......++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       128 ~---~~~~~~IiHrDiKp~NIll~~~-~~vkl~DFG~a~~  163 (269)
T d2java1         128 R---SDGGHTVLHRDLKPANVFLDGK-QNVKLGDFGLARI  163 (269)
T ss_dssp             H---CC---------CCGGGEEECTT-SCEEECCHHHHHH
T ss_pred             h---cCCCCCEEeCcCchhhcCcCCC-CcEEEeeccceee
Confidence            2   1223458999999999999974 6899999998853

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.3e-07  Score=75.78  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ...|..|....||++....    ++..|.+|+.....   ..... ..+|+.+++.+..-. ..++++.+.+.    +|+
T Consensus        11 ~~~iG~G~fg~Vy~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1          11 GRPLGKGKFGNVYLAREKQ----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN-ILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             EEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             EEEEecCCCcEEEEEEECC----CCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCC-CCeEEEEEEECCEEEEEE
Confidence            4567788889999998643    35788899764321   11111 146888887775433 34567665432    899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|.++..              .+.+-.  ..      . ......+..+                 +...++.|-+ 
T Consensus        86 Ey~~~g~L~~--------------~l~~~~--~l------~-e~~~~~i~~q-----------------i~~al~~lH~-  124 (263)
T d2j4za1          86 EYAPLGTVYR--------------ELQKLS--KF------D-EQRTATYITE-----------------LANALSYCHS-  124 (263)
T ss_dssp             ECCTTCBHHH--------------HHHHHS--SC------C-HHHHHHHHHH-----------------HHHHHHHHHH-
T ss_pred             eecCCCcHHH--------------HHhhcC--CC------C-HHHHHHHHHH-----------------HHHHHHHHHH-
Confidence            9999876531              111100  00      0 1122223222                 2233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                             ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       125 -------~~ivHrDiKp~Nill~~~-~~~kl~DFG~a~~  155 (263)
T d2j4za1         125 -------KRVIHRDIKPENLLLGSA-GELKIADFGWSVH  155 (263)
T ss_dssp             -------TTCCCCCCCGGGEEECTT-SCEEECCCCSCSC
T ss_pred             -------CCeeeeeeccccceecCC-CCEeecccceeee
Confidence                   238999999999999874 6899999998854

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.8e-07  Score=79.61  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cccC-hHHHHHHHHHHHhCCCCceEEEEECC-e---eEEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEE  112 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e  112 (267)
                      -+..|..|....||++....    .+..+.+|+...... ...+ ..+|+.+++.+..-. ..++++.+.+ +   +|+|
T Consensus        10 ~~~~iG~G~fg~V~~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_          10 KISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             EEEEEECCSSCCEEEEEETT----TTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTT-BCCEEEEEECSSEEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECC----CCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEE
Confidence            45678888889999998543    357788887654321 1111 146888877774322 3456666532 2   8899


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      |++|..+..       +..       + +. ..       ....+..+..                 .+...+..|-+  
T Consensus        85 y~~gg~L~~-------~l~-------~-~~-~l-------~~~~~~~~~~-----------------qil~aL~yLH~--  122 (322)
T d1s9ja_          85 HMDGGSLDQ-------VLK-------K-AG-RI-------PEQILGKVSI-----------------AVIKGLTYLRE--  122 (322)
T ss_dssp             CCTTEEHHH-------HHH-------H-HS-SC-------CHHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             cCCCCcHHH-------HHh-------h-cC-CC-------CHHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            999865531       111       0 00 00       0112222222                 22233344432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ...++|+|++|.|||++++ +.+.|+||..|..
T Consensus       123 -----~~~IiHRDiKP~NILl~~~-~~vkl~DFGla~~  154 (322)
T d1s9ja_         123 -----KHKIMHRDVKPSNILVNSR-GEIKLCDFGVSGQ  154 (322)
T ss_dssp             -----HHCCCCSCCSGGGEEECTT-CCEEECCCCCCHH
T ss_pred             -----hCCEEccccCHHHeeECCC-CCEEEeeCCCccc
Confidence                 1248999999999999874 7899999998863

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.8e-07  Score=75.05  Aligned_cols=143  Identities=17%  Similarity=0.153  Sum_probs=81.1

Q ss_pred             cEEEE-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cccc-ChHHHHHHHHHHHhCCCCceEEEEEC-----C
Q 024452           37 ALQVI-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFF-NRDDEIRTFECMSSQGQGPRLLGRFG-----D  107 (267)
Q Consensus        37 ~~~i~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~-----~  107 (267)
                      ..++. .|..|.-..||++....    ++..+.+|......  .... .-.+|+++++.+.. --..++++.+.     +
T Consensus        10 y~~~~~~iG~G~fg~Vy~~~~~~----~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~~~~~~~~~~~~~   84 (270)
T d1t4ha_          10 FLKFDIEIGRGSFKTVYKGLDTE----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQH-PNIVRFYDSWESTVKGK   84 (270)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCC-TTBCCEEEEEEEESSSC
T ss_pred             EEEeeeEEecCcCcEEEEEEECC----CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCC-CCeeeEEEEEeeccccC
Confidence            34544 47777788999998643    24677777653321  1111 11368888777753 22345665532     2


Q ss_pred             e---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 G---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      .   +|+||++|.++..       .       +.+-..  .      + ......|..+                 +...
T Consensus        85 ~~~~ivmE~~~~g~L~~-------~-------l~~~~~--~------~-~~~~~~~~~q-----------------i~~g  124 (270)
T d1t4ha_          85 KCIVLVTELMTSGTLKT-------Y-------LKRFKV--M------K-IKVLRSWCRQ-----------------ILKG  124 (270)
T ss_dssp             EEEEEEEECCCSCBHHH-------H-------HHHHSS--C------C-HHHHHHHHHH-----------------HHHH
T ss_pred             CEEEEEEeCCCCCcHHH-------H-------Hhcccc--c------c-HHHHHHHHHH-----------------HHHH
Confidence            2   7899999876532       1       111000  0      0 1122223322                 2233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.|-+      ....++|+|++|.|||++++.+.+.|+||..|..
T Consensus       125 l~yLH~------~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_         125 LQFLHT------RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             HHHHHT------SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             HHHHHH------CCCCEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            344421      2234899999999999975346799999999864

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.2e-06  Score=73.27  Aligned_cols=139  Identities=12%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccc---cChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVF---FNRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~---~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      -...|..|.-..||++....    ++..|.+|+.....    ...   ..-.+|+++++.+..-+ ..++++.+.+.   
T Consensus        14 ~~~~lG~G~fg~Vy~~~~~~----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~   88 (293)
T d1jksa_          14 TGEELGSGQFAVVKKCREKS----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN-VITLHEVYENKTDV   88 (293)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             EeEEEecCCCeEEEEEEECC----CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEE
Confidence            34667888889999998643    35789899764321    111   11247999998885433 34677765432   


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++..       ..       .+-.  ..      . ......+..+                 +...++.
T Consensus        89 ~iv~E~~~gg~L~~-------~i-------~~~~--~l------~-~~~~~~~~~q-----------------i~~al~y  128 (293)
T d1jksa_          89 ILILELVAGGELFD-------FL-------AEKE--SL------T-EEEATEFLKQ-----------------ILNGVYY  128 (293)
T ss_dssp             EEEEECCCSCBHHH-------HH-------HHHS--SC------C-HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEcCCCccccc-------hh-------cccc--cc------c-hhHHHHHHHH-----------------HHHHHHh
Confidence             8899999866532       11       1100  00      0 1122223222                 2233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCC---CEEEEeecccCc
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETS---SITIIVSFTFLQ  230 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~---~v~lIDwE~a~~  230 (267)
                      |-+        ..++|+|++|.|||++.++.   .+.++||..|..
T Consensus       129 LH~--------~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_         129 LHS--------LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             HHH--------TTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             hhh--------cceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            432        23999999999999986422   489999998753

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.7e-07  Score=78.19  Aligned_cols=138  Identities=16%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      -+..|..|....||++....    ++..|.+|+.....   ..... ..+|..+++.+. +-...+++..+.+.    +|
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~-hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           9 YLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-HPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC-CTTBCCEEEEEECSSEEEEE
T ss_pred             EEEEEecCcCeEEEEEEECC----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCC-CCCEEEEEeeeccccccccc
Confidence            35667888889999998643    35789999865321   11111 136778777764 33345666665432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+.+-.  ..     +  .+....|..+                 +...++.+-+
T Consensus        84 ~ey~~gg~L~~--------------~~~~~~--~~-----~--e~~~~~~~~q-----------------il~al~ylH~  123 (337)
T d1o6la_          84 MEYANGGELFF--------------HLSRER--VF-----T--EERARFYGAE-----------------IVSALEYLHS  123 (337)
T ss_dssp             EECCTTCBHHH--------------HHHHHS--CC-----C--HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             eeccCCCchhh--------------hhhccc--CC-----c--HHHHHHHHHH-----------------Hhhhhhhhhh
Confidence            99999865521              011100  00     0  1123333322                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       124 --------~~iiHRDlKP~NILl~~~-g~vkl~DFG~a~~  154 (337)
T d1o6la_         124 --------RDVVYRDIKLENLMLDKD-GHIKITDFGLCKE  154 (337)
T ss_dssp             --------TTCBCCCCCGGGEEECTT-SCEEECCCTTCBC
T ss_pred             --------cCccccccCHHHeEecCC-CCEEEeecccccc
Confidence                    247999999999999974 6899999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.2e-06  Score=73.42  Aligned_cols=137  Identities=16%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE------CC----ee
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF------GD----GR  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~------~~----~~  109 (267)
                      +..|..|....||++....    .+..|.+|+...+.. ..  .+|+++++.+....+ .+++..+      .+    .+
T Consensus        25 ~k~LG~G~fg~Vy~a~~~~----~~~~vAiK~i~~~~~-~~--~~Ei~il~~l~h~ni-v~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          25 TKVIGNGSFGVVYQAKLCD----SGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNI-VRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSS-SC--CHHHHHHHHCCCTTB-CCEEEEEEEC--CCSCCEEEE
T ss_pred             eeEEeeCcCeEEEEEEECC----CCCEEEEEEECccch-HH--HHHHHHHHhcCCCCC-CcEEEEEEecCccCCceEEEE
Confidence            3447778788999998643    357888998755432 23  379999988854443 3344432      11    16


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|....           .+.....    ..   .  .-....+..|..+                 +...++.|-
T Consensus        97 v~Ey~~~~~~~-----------~l~~~~~----~~---~--~l~~~~~~~i~~q-----------------il~aL~yLH  139 (350)
T d1q5ka_          97 VLDYVPETVYR-----------VARHYSR----AK---Q--TLPVIYVKLYMYQ-----------------LFRSLAYIH  139 (350)
T ss_dssp             EEECCSEEHHH-----------HHHHHHH----TT---C--CCCHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEeccCCccHH-----------HHHhhhh----cc---C--CCCHHHHHHHHHH-----------------HHHHHHHHH
Confidence            78888762111           1111000    00   0  0011223333322                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.++..+.|+||..|.
T Consensus       140 ~--------~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~  171 (350)
T d1q5ka_         140 S--------FGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  171 (350)
T ss_dssp             T--------TTEECCCCCGGGEEECTTTCCEEECCCTTCE
T ss_pred             h--------cCCcccCCCcceEEEecCCCceeEecccchh
Confidence            2        2499999999999998754578899999875

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-06  Score=71.53  Aligned_cols=141  Identities=18%  Similarity=0.098  Sum_probs=82.3

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      +.++ +..|..|.-..||++...+     +..+.+|....+....-+-.+|+++++.+..-. ..++++.+.+    .+|
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~g~~~~~~~~~lv   78 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICLV   78 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETT-----TEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECC-----CCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCC-cccccceeccCCceEEE
Confidence            4444 4667888888999998642     467889987654322112247888888885433 3456776542    288


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|.++..       .          ++....     .-..+....+..+                 +...+..+.+
T Consensus        79 ~E~~~~g~L~~-------~----------l~~~~~-----~~~~~~~~~i~~q-----------------ia~gl~~lH~  119 (263)
T d1sm2a_          79 FEFMEHGCLSD-------Y----------LRTQRG-----LFAAETLLGMCLD-----------------VCEGMAYLEE  119 (263)
T ss_dssp             EECCTTCBHHH-------H----------HHTTTT-----CCCHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EEecCCCcHHH-------H----------hhcccc-----CCCHHHHHHHHHH-----------------HHHHHHhhhc
Confidence            99999866542       0          111111     0111222223222                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++++ +.+.|.||..|..
T Consensus       120 --------~~iiHrDlKp~Nill~~~-~~~Kl~DFGla~~  150 (263)
T d1sm2a_         120 --------ACVIHRDLAARNCLVGEN-QVIKVSDFGMTRF  150 (263)
T ss_dssp             --------TTCCCTTCSGGGEEECGG-GCEEECSCC----
T ss_pred             --------cceeecccchhheeecCC-CCeEecccchhee
Confidence                    137999999999999974 6899999998753

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=6e-07  Score=77.25  Aligned_cols=138  Identities=13%  Similarity=0.104  Sum_probs=81.4

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      .+..|..|....||++....    ++..|.+|+.....   ..... ..+|+.+++.+..-. ..+++..+.+  .  +|
T Consensus        45 i~~~lG~G~fg~Vy~a~~~~----~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          45 RIKTLGTGSFGRVMLVKHKE----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF-LVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             EEEEeecCcCcEEEEEEECC----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCc-Eeecccccccccccccc
Confidence            46778888889999998643    35788999764321   01111 136888777764323 3455655532  2  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+..          .+.+    -.  ..      . ...+..+..+                 +...+..|-+
T Consensus       120 ~e~~~~g~l~~----------~l~~----~~--~l------~-e~~~~~i~~q-----------------i~~aL~yLH~  159 (350)
T d1rdqe_         120 MEYVAGGEMFS----------HLRR----IG--RF------S-EPHARFYAAQ-----------------IVLTFEYLHS  159 (350)
T ss_dssp             EECCTTCBHHH----------HHHH----HC--CC------C-HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             cccccccchhh----------hHhh----cC--CC------C-HHHHHHHHHH-----------------HHHHHHHHHh
Confidence            99998865521          1110    00  00      0 1122223322                 2233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       160 --------~~iiHRDIKP~NILl~~~-g~ikL~DFG~a~~  190 (350)
T d1rdqe_         160 --------LDLIYRDLKPENLLIDQQ-GYIQVTDFGFAKR  190 (350)
T ss_dssp             --------TTEECCCCSGGGEEECTT-SCEEECCCTTCEE
T ss_pred             --------CCEecCcCCHHHcccCCC-CCEEeeeceeeee
Confidence                    239999999999999874 6899999998853

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-06  Score=72.11  Aligned_cols=135  Identities=14%  Similarity=0.126  Sum_probs=80.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--cc-ccChHHHHHHHHHHHhCCCCceEEEEECCe---eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EV-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e~  113 (267)
                      .+.|..|.-..||+++.       .+.+.+|+.....  .. ...-.+|+.+++.+..-.+. +++++..+.   +|+||
T Consensus        13 ~~~lG~G~fg~Vy~~~~-------~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv-~~~~~~~~~~~~lv~Ey   84 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKW-------HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL-LFMGYSTAPQLAIVTQW   84 (276)
T ss_dssp             CSEEEECSSCEEEEEES-------SSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBC-CEEEEECSSSCEEEEEC
T ss_pred             EEEEeeCCCcEEEEEEE-------CCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEe-eeeEEEeccEEEEEEec
Confidence            34577777889999974       2468888864332  11 11113688888777544443 566665433   89999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .   ++....+    .+ ......+..                 .+...++.|-+   
T Consensus        85 ~~~g~L~~--------------~---l~~~~~~----~~-~~~~~~i~~-----------------qi~~gl~yLH~---  122 (276)
T d1uwha_          85 CEGSSLYH--------------H---LHIIETK----FE-MIKLIDIAR-----------------QTAQGMDYLHA---  122 (276)
T ss_dssp             CCEEEHHH--------------H---HHTSCCC----CC-HHHHHHHHH-----------------HHHHHHHHHHH---
T ss_pred             CCCCCHHH--------------H---HhhccCC----CC-HHHHHHHHH-----------------HHHHHHHHHhc---
Confidence            99865531              1   1111111    11 112222222                 22333344433   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                           ..++|+|++|.|||++.+ +.+.|.||..|..
T Consensus       123 -----~~ivHrDlKp~NiLl~~~-~~~Kl~DFGla~~  153 (276)
T d1uwha_         123 -----KSIIHRDLKSNNIFLHED-LTVKIGDFGLATV  153 (276)
T ss_dssp             -----TTCCCSCCCGGGEEEETT-SSEEECCCCCSCC
T ss_pred             -----CCEeccccCHHHEEEcCC-CCEEEccccceee
Confidence                 138999999999999974 6899999998753

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.1e-06  Score=73.57  Aligned_cols=141  Identities=17%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~  108 (267)
                      ++.+ ...|..|....||++....    ++..|.+|+.....   ..... ..+|+++++.+..-++ .++++.+.+  .
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~   82 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELA----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF-VKLYFTFQDDEK   82 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTB-CCEEEEEECSSE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECC----CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCe-eEEEEEEEECCE
Confidence            4455 4455777788999998643    35789999864321   11111 2478888888854333 456666532  2


Q ss_pred             --eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          109 --RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       109 --~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                        +|+||++|.++..       .       +.+-..  .      + ......+..+                 +...++
T Consensus        83 ~~ivmEy~~gg~L~~-------~-------~~~~~~--l------~-e~~~~~~~~q-----------------i~~al~  122 (288)
T d1uu3a_          83 LYFGLSYAKNGELLK-------Y-------IRKIGS--F------D-ETCTRFYTAE-----------------IVSALE  122 (288)
T ss_dssp             EEEEECCCTTEEHHH-------H-------HHHHSS--C------C-HHHHHHHHHH-----------------HHHHHH
T ss_pred             EEEEEEccCCCCHHH-------h-------hhccCC--C------C-HHHHHHHHHH-----------------HHHHHH
Confidence              8899999865531       0       110000  0      0 1122222222                 222333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .+-+        ..++|+|++|.|||++++ +.+.|+||..|..
T Consensus       123 ylH~--------~~iiHrDiKp~NIll~~~-~~vkl~DFG~a~~  157 (288)
T d1uu3a_         123 YLHG--------KGIIHRDLKPENILLNED-MHIQITDFGTAKV  157 (288)
T ss_dssp             HHHH--------TTEECSCCSGGGEEECTT-SCEEECCCTTCEE
T ss_pred             hhcc--------ccEEcCcCCccccccCCC-ceEEeccccccee
Confidence            3332        249999999999999874 6899999998853

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.6e-06  Score=72.44  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eE
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RV  110 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v  110 (267)
                      +.++ ...|..|.-..||++....    .+..+.+|+...+....-+-.+|+++++.+..-. .-++++.+.++    ++
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~iv   91 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFYII   91 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGG----GTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECC----CCeEEEEEEECCccchHHHHHHHHHHHHhCCCCC-EecCCccEeeCCeeEEE
Confidence            4555 4556888889999998643    2467889987554322212247999998885433 34566665432    88


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||++|..+..              .+   +....  .  .-.......+..                 .+...++.|-+
T Consensus        92 ~E~~~~g~l~~--------------~l---~~~~~--~--~~~~~~~~~i~~-----------------qi~~gL~yLH~  133 (287)
T d1opja_          92 TEFMTYGNLLD--------------YL---RECNR--Q--EVSAVVLLYMAT-----------------QISSAMEYLEK  133 (287)
T ss_dssp             EECCTTCBHHH--------------HH---HHSCT--T--TSCHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred             eecccCcchHH--------------Hh---hhccc--c--chHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence            99999765421              11   11100  0  001112222222                 12233344432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              ..++|+|++|.|||++++ +.+.|.||..|..
T Consensus       134 --------~~iiHrDlKp~NILl~~~-~~~Kl~DFG~a~~  164 (287)
T d1opja_         134 --------KNFIHRDLAARNCLVGEN-HLVKVADFGLSRL  164 (287)
T ss_dssp             --------TTCCCSCCSGGGEEECGG-GCEEECCCCCTTT
T ss_pred             --------CCcccCccccCeEEECCC-CcEEEccccceee
Confidence                    138999999999999874 6899999998854

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.8e-07  Score=75.94  Aligned_cols=139  Identities=16%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v  110 (267)
                      ..+..|+.|....||++....    .+..|.+|+......  .... ..+|+++++.+.... ..+++..+.+  .  +|
T Consensus         5 ~~~~~lG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~-Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           5 QKVEKIGEGTYGVVYKARNKL----TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN-IVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             EEEEEEEECSSSEEEEEEETT----TCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             EeccEEecCcCeEEEEEEECC----CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCc-EEEeccccccccceeEE
Confidence            356788888889999998643    357888998744321  1111 247888888775433 3456665532  2  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      +||.+|.....               +. .+.    ...  -....+..|..+                 +...++.|.+
T Consensus        80 ~e~~~~~~~~~---------------~~-~~~----~~~--l~e~~~~~~~~q-----------------il~~L~yLH~  120 (298)
T d1gz8a_          80 FEFLHQDLKKF---------------MD-ASA----LTG--IPLPLIKSYLFQ-----------------LLQGLAFCHS  120 (298)
T ss_dssp             EECCSEEHHHH---------------HH-HTT----TTC--CCHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             EeecCCchhhh---------------hh-hhc----ccC--CCHHHHHHHHHH-----------------HHHHHHHhhc
Confidence            99987632111               00 000    000  011223333332                 2233344433


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|+|||++.+ +.+.++||..|.
T Consensus       121 --------~~IiHrDiKpeNIl~~~~-~~~kl~DFG~a~  150 (298)
T d1gz8a_         121 --------HRVLHRDLKPQNLLINTE-GAIKLADFGLAR  150 (298)
T ss_dssp             --------TTCCCSCCCGGGEEECTT-SCEEECSTTHHH
T ss_pred             --------CCEEccccCchheeeccc-CcceeccCCcce
Confidence                    238999999999999874 688999999874

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.8e-06  Score=71.06  Aligned_cols=138  Identities=16%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-----cccC-hHHHHHHHHHHHhCCCCceEEEEECCe----
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-----VFFN-RDDEIRTFECMSSQGQGPRLLGRFGDG----  108 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-----~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~~----  108 (267)
                      ++..|..|....||++....    .+..|.+|+......     .... ..+|+.+++.+..-. ..++++.+.+.    
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~~~~~~~~~~~~~   76 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKN----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGLLDAFGHKSNIS   76 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSS----CCSEEEEEEC------------CTHHHHHHHHHHHCCCTT-BCCEEEEECCTTCCE
T ss_pred             cceEeccCcCeEEEEEEECC----CCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCC-EeEEEeeeccCCcee
Confidence            45678778788999998543    357888998643321     1111 147899888886433 34566666432    


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||.+|..+..                  +........ .    ..+..|..+                 +...++.|
T Consensus        77 ivmE~~~~~~~~~------------------~~~~~~~l~-~----~~~~~~~~q-----------------il~aL~~l  116 (299)
T d1ua2a_          77 LVFDFMETDLEVI------------------IKDNSLVLT-P----SHIKAYMLM-----------------TLQGLEYL  116 (299)
T ss_dssp             EEEECCSEEHHHH------------------HTTCCSSCC-S----SHHHHHHHH-----------------HHHHHHHH
T ss_pred             ehhhhhcchHHhh------------------hhhcccCCC-H----HHHHHHHHH-----------------HHHHHHHh
Confidence            8999988743211                  011000000 0    122333322                 22333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      -+        ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       117 H~--------~~iiHrDiKp~NIli~~~-~~~KL~DFG~a~~  149 (299)
T d1ua2a_         117 HQ--------HWILHRDLKPNNLLLDEN-GVLKLADFGLAKS  149 (299)
T ss_dssp             HH--------TTCCCCCCCGGGEEECTT-CCEEECCCGGGST
T ss_pred             hc--------cceecccCCcceEEecCC-CccccccCccccc
Confidence            32        237999999999999974 7899999998843

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=4.3e-07  Score=76.81  Aligned_cols=139  Identities=12%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---ccc-ChHHHHHHHHHHHhCCCCceEEEEEC--Ce--e
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFF-NRDDEIRTFECMSSQGQGPRLLGRFG--DG--R  109 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~  109 (267)
                      -.+..|..|....||++....    ++..|.+|+......   ... +-.+|+.+++.+..-.+ -++++.+.  +.  +
T Consensus        18 ~~l~~lG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnI-v~~~~~~~~~~~~~i   92 (309)
T d1u5ra_          18 SDLREIGHGSFGAVYFARDVR----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT-IQYRGCYLREHTAWL   92 (309)
T ss_dssp             EEEEEEEECSSSEEEEEEETT----TTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTB-CCEEEEEEETTEEEE
T ss_pred             EeeEEEecCCCeEEEEEEECC----CCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCE-eeEEEEEEECCEEEE
Confidence            357788888889999997543    356788887643321   111 12468888877753333 35565542  32  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..        .        ..+....       .......+..+                 +...+..|-
T Consensus        93 v~E~~~~g~l~~--------~--------~~~~~~l-------~e~~~~~i~~q-----------------i~~aL~yLH  132 (309)
T d1u5ra_          93 VMEYCLGSASDL--------L--------EVHKKPL-------QEVEIAAVTHG-----------------ALQGLAYLH  132 (309)
T ss_dssp             EEECCSEEHHHH--------H--------HHHTSCC-------CHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEecCCCchHH--------H--------HHhCCCC-------CHHHHHHHHHH-----------------HHHHHHHHH
Confidence            899998754321        0        0011111       11223333322                 223334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       133 ~--------~~iiHrDiKp~NILl~~~-~~~Kl~DFG~a~~  164 (309)
T d1u5ra_         133 S--------HNMIHRDVKAGNILLSEP-GLVKLGDFGSASI  164 (309)
T ss_dssp             H--------TTCBCCCCSGGGEEEETT-TEEEECCCTTCBS
T ss_pred             h--------CCEeccCCCcceEEECCC-CCEEEeecccccc
Confidence            2        139999999999999974 6899999998763

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=2e-06  Score=71.12  Aligned_cols=136  Identities=15%  Similarity=0.086  Sum_probs=78.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc---cccC-hHHHHHHHHHHHhCCCCceEEEEE---C-C-e--
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE---VFFN-RDDEIRTFECMSSQGQGPRLLGRF---G-D-G--  108 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~---~~~d-r~~E~~~~~~l~~~gl~P~v~~~~---~-~-~--  108 (267)
                      ...|..|....||++....    .+..|.+|+......   .... -.+|+++++.+..-++. +++...   . . +  
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv-~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_          12 GEILGFGGMSEVHLARDLR----LHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIV-AVYDTGEAETPAGPLP   86 (277)
T ss_dssp             EEEEEECSSEEEEEEEETT----TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBC-CEEEEEEEECSSSEEE
T ss_pred             eEEEeeCCCeEEEEEEECC----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCC-cccceeeeccCCCceE
Confidence            4567888889999998543    357899998754321   1111 14677777766544443 333332   1 1 1  


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +||||++|..+..              .+.+-..        .. ......+..+                 +...++.
T Consensus        87 ~lvmE~~~g~~L~~--------------~~~~~~~--------l~-~~~~~~i~~q-----------------i~~al~~  126 (277)
T d1o6ya_          87 YIVMEYVDGVTLRD--------------IVHTEGP--------MT-PKRAIEVIAD-----------------ACQALNF  126 (277)
T ss_dssp             EEEEECCCEEEHHH--------------HHHHHCS--------CC-HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEECCCCCEehh--------------hhcccCC--------CC-HHHHHHHHHH-----------------HHHHHHH
Confidence             7899999865431              0100000        01 1122223222                 2233344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +-+        ..++|+|++|.|||++.+ +...++||..+.
T Consensus       127 lH~--------~~iiHrDiKP~NIll~~~-~~~~l~d~~~~~  159 (277)
T d1o6ya_         127 SHQ--------NGIIHRDVKPANIMISAT-NAVKVMDFGIAR  159 (277)
T ss_dssp             HHH--------TTEECCCCSGGGEEEETT-SCEEECCCTTCE
T ss_pred             HHh--------CCccCccccCcccccCcc-ccceeehhhhhh
Confidence            432        239999999999999974 678999998764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=1.5e-06  Score=75.08  Aligned_cols=137  Identities=12%  Similarity=0.009  Sum_probs=79.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccChHHHHHHHHHHHhCC--CCceEEEEECC--e--e
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFNRDDEIRTFECMSSQG--QGPRLLGRFGD--G--R  109 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~dr~~E~~~~~~l~~~g--l~P~v~~~~~~--~--~  109 (267)
                      +..|..|.-..||++....    .+..|.+|+.....    .......+|...++.++...  -..++++.+.+  .  +
T Consensus         9 ~~~lG~G~fg~Vy~~~~~~----t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~i   84 (364)
T d1omwa3           9 HRIIGRGGFGEVYGCRKAD----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSF   84 (364)
T ss_dssp             EEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEE
T ss_pred             eeEEecCCCeEEEEEEECC----CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEE
Confidence            4566778789999998643    35789999864321    00000124555566665432  23556666532  2  8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..          .+    .+ +. ..       ....+..|..+                 +...++.+-
T Consensus        85 vmE~~~gg~L~~----------~l----~~-~~-~~-------~e~~~~~~~~q-----------------i~~aL~ylH  124 (364)
T d1omwa3          85 ILDLMNGGDLHY----------HL----SQ-HG-VF-------SEADMRFYAAE-----------------IILGLEHMH  124 (364)
T ss_dssp             EECCCCSCBHHH----------HH----HH-HC-SC-------CHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEecCCCcHHH----------HH----Hh-cc-cc-------cHHHHHHHHHH-----------------HHHHHHHHH
Confidence            899999876532          11    11 10 00       01122333322                 222333333


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +        ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       125 ~--------~~iiHrDlKP~NILl~~~-g~iKl~DFGla~  155 (364)
T d1omwa3         125 N--------RFVVYRDLKPANILLDEH-GHVRISDLGLAC  155 (364)
T ss_dssp             H--------TTEECCCCSGGGEEECSS-SCEEECCCTTCE
T ss_pred             H--------CCccceeeccceeEEcCC-CcEEEeeeceee
Confidence            2        248999999999999874 689999999875

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=1.6e-06  Score=73.37  Aligned_cols=137  Identities=16%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---ccccC-hHHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFFN-RDDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      +..|..|....||++....    ++..|.+|+.....   ..... -.+|+.+++.+..-++ .++++.+.+  .  +|+
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~----~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRH----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI-IRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             EEEEEECSSCEEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTB-CCEEEEEECSSEEEEEE
T ss_pred             EEEEecCcCcEEEEEEECC----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcCh-hheeeeEeeCCeeeeEe
Confidence            5677888889999998643    35789899864321   11111 1367888777744333 456666543  2  889


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..              .+..    .   ..  ........|..+                 +...+..+-+ 
T Consensus        84 E~~~gg~l~~--------------~~~~----~---~~--~~~~~~~~~~~q-----------------i~~al~~lH~-  122 (316)
T d1fota_          84 DYIEGGELFS--------------LLRK----S---QR--FPNPVAKFYAAE-----------------VCLALEYLHS-  122 (316)
T ss_dssp             CCCCSCBHHH--------------HHHH----T---SS--CCHHHHHHHHHH-----------------HHHHHHHHHT-
T ss_pred             eecCCccccc--------------cccc----c---cc--ccccHHHHHHHH-----------------HHHhhhhhcc-
Confidence            9999864321              0000    0   00  011122223222                 2223333321 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                             ..++|+|++|.|||++.+ +.+.|+||..|..
T Consensus       123 -------~~iiHrDiKp~NILl~~~-g~vkL~DFG~a~~  153 (316)
T d1fota_         123 -------KDIIYRDLKPENILLDKN-GHIKITDFGFAKY  153 (316)
T ss_dssp             -------TTEECCCCCGGGEEECTT-SCEEECCCSSCEE
T ss_pred             -------CcEEccccCchheeEcCC-CCEEEecCccceE
Confidence                   249999999999999874 7899999998753

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.1e-06  Score=72.14  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -....++|+|++|.|||++++ +.+.|.||..|.
T Consensus       124 ~~~~~IvHrDlKp~NILl~~~-~~~Kl~DFGl~~  156 (303)
T d1vjya_         124 QGKPAIAHRDLKSKNILVKKN-GTCCIADLGLAV  156 (303)
T ss_dssp             TCBCEEECSCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             ccCCCeeccccCccceEEcCC-CCeEEEecCccc
Confidence            456789999999999999874 789999998553

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.9e-06  Score=71.82  Aligned_cols=141  Identities=14%  Similarity=0.165  Sum_probs=83.6

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe---eEE
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVE  111 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~  111 (267)
                      +.++ ...|..|.-..||++....     ...+.+|+........-+-.+|+.+++.+....+. ++++...+.   +|+
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~-----~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv-~~~g~~~~~~~~lv~   90 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLV-QLYAVVSEEPIYIVT   90 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETT-----TEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBC-CEEEEECSSSCEEEE
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECC-----CCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEe-EEEEEEecCCeEEEE
Confidence            4455 4556778788999998643     35788898754432111124788888888655443 466666433   899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+....                 +....  . ..+ +.....+..                 .+...+..|-+ 
T Consensus        91 Ey~~~g~l~~~~-----------------~~~~~--~-~l~-~~~~~~i~~-----------------~i~~gl~~LH~-  131 (285)
T d1fmka3          91 EYMSKGSLLDFL-----------------KGETG--K-YLR-LPQLVDMAA-----------------QIASGMAYVER-  131 (285)
T ss_dssp             CCCTTCBHHHHH-----------------SHHHH--T-TCC-HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             EecCCCchhhhh-----------------hhccc--c-cch-HHHHHHHHH-----------------HHHHHHHHHhh-
Confidence            999986543210                 00000  0 001 111111211                 22233344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       132 -------~~ivH~DlKp~NIll~~~-~~~kl~DfGla~  161 (285)
T d1fmka3         132 -------MNYVHRDLRAANILVGEN-LVCKVADFGLAR  161 (285)
T ss_dssp             -------TTCCCSCCSGGGEEECGG-GCEEECCCCTTC
T ss_pred             -------hheecccccceEEEECCC-CcEEEcccchhh
Confidence                   138999999999999874 689999999885

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=4.9e-06  Score=70.04  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=77.0

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECC-e---eEEEe
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G---RVEEF  113 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~---~v~e~  113 (267)
                      ...|..|....||++....    .+..|.+|+...... . .....+|+.+++.+.. --..++++.+.+ +   +|+||
T Consensus        14 ~~~lG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~H-pnIv~l~~~~~~~~~~~lvmE~   88 (307)
T d1a06a_          14 RDVLGTGAFSEVILAEDKR----TQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKH-PNIVALDDIYESGGHLYLIMQL   88 (307)
T ss_dssp             EEESBSGGGGGEEEEEETT----TCCEEEEEEEEC----------CHHHHHHHTCCC-TTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEeeccCeEEEEEEECC----CCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCC-CCCCcEEEEEEECCEEEEEEec
Confidence            4556788889999998543    357888998654321 1 1111378998888753 233556666543 2   88999


Q ss_pred             ecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCC
Q 024452          114 IHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELP  193 (267)
Q Consensus       114 i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~  193 (267)
                      ++|.++..              .+.   ..    .. . .......+..+                 +...++.|-+   
T Consensus        89 ~~gg~L~~--------------~l~---~~----~~-l-~e~~~~~~~~q-----------------i~~al~ylH~---  125 (307)
T d1a06a_          89 VSGGELFD--------------RIV---EK----GF-Y-TERDASRLIFQ-----------------VLDAVKYLHD---  125 (307)
T ss_dssp             CCSCBHHH--------------HHH---TC----SC-C-CHHHHHHHHHH-----------------HHHHHHHHHH---
T ss_pred             cCCCcHHH--------------hhh---cc----cC-C-CHHHHHHHHHH-----------------HHHHHHhhhh---
Confidence            99876632              111   10    00 0 11122223222                 2233344432   


Q ss_pred             CCCCcEEEEccCCCCCCeeeeC--CCCCEEEEeecccCc
Q 024452          194 NDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQ  230 (267)
Q Consensus       194 ~~~~~~~l~H~Dl~~~Nilv~~--~~~~v~lIDwE~a~~  230 (267)
                           ..++|+|++|.|||+..  +++.+.|+||..|..
T Consensus       126 -----~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~  159 (307)
T d1a06a_         126 -----LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM  159 (307)
T ss_dssp             -----TTCCCSCCCGGGEEESSSSTTCCEEECCC-----
T ss_pred             -----ceeeeEEecccceeecccCCCceEEEeccceeEE
Confidence                 23999999999999953  235799999999864

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.2e-06  Score=69.87  Aligned_cols=142  Identities=17%  Similarity=0.051  Sum_probs=82.0

Q ss_pred             EEE-EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----cccc--C-hHHHHHHHHHHHh-CCCCceEEEEECC-
Q 024452           38 LQV-IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFF--N-RDDEIRTFECMSS-QGQGPRLLGRFGD-  107 (267)
Q Consensus        38 ~~i-~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~--d-r~~E~~~~~~l~~-~gl~P~v~~~~~~-  107 (267)
                      .++ ..|..|.-..||++....    ++..+.+|+.....    ....  . -.+|+.+++.+.. +--..+++..+.+ 
T Consensus         6 Y~i~~~lG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~   81 (273)
T d1xwsa_           6 YQVGPLLGSGGFGSVYSGIRVS----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP   81 (273)
T ss_dssp             EEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             EEEeEEEeeCCCeEEEEEEECC----CCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC
Confidence            444 456777778999998543    35788898764321    1110  1 1479999998874 3224567776543 


Q ss_pred             -e--eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 -G--RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 -~--~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                       .  +|+++.+|....         .    ..+.+=+.  .       .......|..+                 +...
T Consensus        82 ~~~~lv~e~~~~~~~l---------~----~~~~~~~~--l-------~e~~~~~~~~q-----------------i~~a  122 (273)
T d1xwsa_          82 DSFVLILERPEPVQDL---------F----DFITERGA--L-------QEELARSFFWQ-----------------VLEA  122 (273)
T ss_dssp             SEEEEEEECCSSEEEH---------H----HHHHHHCS--C-------CHHHHHHHHHH-----------------HHHH
T ss_pred             CeEEEEEEeccCcchH---------H----HHHhccCC--C-------CHHHHHHHHHH-----------------HHHH
Confidence             2  788988763211         0    01111000  0       01122233322                 2223


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.+-+        ..++|+|++|.|||++.+++.+.|+||..|..
T Consensus       123 l~~lH~--------~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~  160 (273)
T d1xwsa_         123 VRHCHN--------CGVLHRDIKDENILIDLNRGELKLIDFGSGAL  160 (273)
T ss_dssp             HHHHHH--------TTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             HHHHHH--------CCCccccCcccceEEecCCCeEEECcccccee
Confidence            334432        24999999999999986556789999998864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.2e-06  Score=72.07  Aligned_cols=139  Identities=14%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             cEEE-EE-ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC-------
Q 024452           37 ALQV-IP-LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD-------  107 (267)
Q Consensus        37 ~~~i-~~-l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-------  107 (267)
                      ...+ .. |..|....||++....    ++..|.+|+.... . .  ..+|+.++..+.++--..+++..+.+       
T Consensus        12 ~y~i~~~~lG~G~fg~Vy~a~~~~----~~~~vAiK~i~~~-~-~--~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~   83 (335)
T d2ozaa1          12 DYKVTSQVLGLGINGKVLQIFNKR----TQEKFALKMLQDC-P-K--ARREVELHWRASQCPHIVRIVDVYENLYAGRKC   83 (335)
T ss_dssp             TEEEEEEEEEECSSCEEEEEEETT----TCCEEEEEEEECS-H-H--HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             CEEEeeEEeeeccCeEEEEEEECC----CCCEEEEEEECCc-H-H--HHHHHHHHHHhcCCCCCCeEEEEEeecccCCCE
Confidence            3554 34 7888889999998543    3578889986432 1 1  14788887766666555667665431       


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .+|+||++|.++..              .|.   ..   +.... .......|..+                 +...++
T Consensus        84 ~~ivmEy~~gg~L~~--------------~i~---~~---~~~~l-~e~~~~~i~~q-----------------i~~al~  125 (335)
T d2ozaa1          84 LLIVMECLDGGELFS--------------RIQ---DR---GDQAF-TEREASEIMKS-----------------IGEAIQ  125 (335)
T ss_dssp             EEEEEECCCSEEHHH--------------HHH---SC---SCCCE-EHHHHHHHHHH-----------------HHHHHH
T ss_pred             EEEEEECCCCCcHHH--------------HHH---hc---CCCCc-CHHHHHHHHHH-----------------HHHHHH
Confidence             28899999875532              111   10   00001 11223333332                 223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCC--CCCEEEEeecccC
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEE--TSSITIIVSFTFL  229 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~--~~~v~lIDwE~a~  229 (267)
                      .|-+        ..++|+|++|.|||++.+  .+.+.|+||..|.
T Consensus       126 ylH~--------~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~  162 (335)
T d2ozaa1         126 YLHS--------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK  162 (335)
T ss_dssp             HHHH--------TTEECCCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             HHHH--------cCCccccccccccccccccccccccccccceee
Confidence            4432        249999999999999853  2358999999874

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-05  Score=67.57  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      ...|..|.-..||++....    .+..|.+|+............+|+++++.+..-+ ..+++..+.  +.  +|+||++
T Consensus        10 ~~~lG~G~fg~Vy~~~~~~----~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~lvmE~~~   84 (321)
T d1tkia_          10 AEDLGRGEFGIVHRCVETS----SKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN-ILHLHESFESMEELVMIFEFIS   84 (321)
T ss_dssp             EEEEEECSSEEEEEEEETT----TTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTT-BCCEEEEEEETTEEEEEECCCC
T ss_pred             EEEEecCCCeEEEEEEECC----CCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEecCC
Confidence            4667777779999998543    3578999987654321111247888888876433 345666543  22  8999999


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |.++...                 ++....+    .+ ...+..|..+                 +...++.|-+     
T Consensus        85 gg~L~~~-----------------i~~~~~~----l~-e~~~~~i~~q-----------------i~~al~yLH~-----  120 (321)
T d1tkia_          85 GLDIFER-----------------INTSAFE----LN-EREIVSYVHQ-----------------VCEALQFLHS-----  120 (321)
T ss_dssp             CCBHHHH-----------------HTSSSCC----CC-HHHHHHHHHH-----------------HHHHHHHHHH-----
T ss_pred             CCcHHHH-----------------HHhcCCC----CC-HHHHHHHHHH-----------------HHHHHHHHHH-----
Confidence            8655320                 1111110    01 1223333322                 2334444432     


Q ss_pred             CCcEEEEccCCCCCCeeeeCC-CCCEEEEeecccCc
Q 024452          196 HQEIGFCHNDLQYGNIMIDEE-TSSITIIVSFTFLQ  230 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~-~~~v~lIDwE~a~~  230 (267)
                         ..++|+|++|.|||++.+ ...+.++||..|..
T Consensus       121 ---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~  153 (321)
T d1tkia_         121 ---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             ---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             ---cCCCcccccccceeecCCCceEEEEcccchhhc
Confidence               239999999999999753 23688999988753

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-05  Score=67.86  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             CcEEE-EEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCcc--cccChHHHHHHHHHHHhCCCCceEEEEECCe---
Q 024452           36 DALQV-IPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVE--VFFNRDDEIRTFECMSSQGQGPRLLGRFGDG---  108 (267)
Q Consensus        36 ~~~~i-~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~--~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---  108 (267)
                      +.+++ ..|..|.-..||++....... .....+.+|.......  ......+|..++..+.++--..++++.+.+.   
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~  116 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  116 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeE
Confidence            45554 456777789999997542110 0123466776543321  1111247888888886665556777776432   


Q ss_pred             -eEEEeecCCCCC
Q 024452          109 -RVEEFIHARTLS  120 (267)
Q Consensus       109 -~v~e~i~G~~l~  120 (267)
                       +|+||++|..+.
T Consensus       117 ~lv~Ey~~~g~L~  129 (325)
T d1rjba_         117 YLIFEYCCYGDLL  129 (325)
T ss_dssp             EEEEECCTTCBHH
T ss_pred             EEEEEcCCCCcHH
Confidence             899999987664

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=6.7e-06  Score=68.87  Aligned_cols=158  Identities=12%  Similarity=0.096  Sum_probs=84.2

Q ss_pred             HHHHHHHhCCCCCCCCCCCCcEEEE-EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cccc-ChHHHHHHHHHHH
Q 024452           17 LKKVLQSVASDWGDVIDDSDALQVI-PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFF-NRDDEIRTFECMS   93 (267)
Q Consensus        17 ~~~l~~~~~p~w~~~~~~~~~~~i~-~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~-dr~~E~~~~~~l~   93 (267)
                      ..+...++.+.+.     .+.+++. .|..|.-..||++....++ .....+.+|...... .... +-.+|+++++.+.
T Consensus        12 ~~~a~~~f~~~i~-----~~~~~~~~~lG~G~fg~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   85 (299)
T d1jpaa_          12 PNEAVREFAKEID-----ISCVKIEQVIGAGEFGEVCSGHLKLPG-KREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD   85 (299)
T ss_dssp             HHHHHHHHSCBCC-----GGGEEEEEEEEECSSSEEEEEEECC----CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhhchhhC-----hhhcEEeeEEeeCCCeEEEEEEEeCCC-CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence            4455556644433     2556654 4677778899999864311 011235566544332 1111 1147888887774


Q ss_pred             hCCCCceEEEEECCe----eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccC
Q 024452           94 SQGQGPRLLGRFGDG----RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCS  169 (267)
Q Consensus        94 ~~gl~P~v~~~~~~~----~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~  169 (267)
                      .-.+ .++++.+.+.    +|+||++|..+..       +       +   +...   .. .. +.....+..       
T Consensus        86 HpnI-v~l~g~~~~~~~~~iv~Ey~~~g~L~~-------~-------~---~~~~---~~-l~-~~~~~~i~~-------  135 (299)
T d1jpaa_          86 HPNV-IHLEGVVTKSTPVMIITEFMENGSLDS-------F-------L---RQND---GQ-FT-VIQLVGMLR-------  135 (299)
T ss_dssp             CTTB-CCEEEEECSSSSCEEEEECCTTEEHHH-------H-------H---HTTT---TC-SC-HHHHHHHHH-------
T ss_pred             CCCC-ccEEEEEeeCCEEEEEEEecCCCccee-------e-------e---cccc---CC-CC-HHHHHHHHH-------
Confidence            3333 4577776422    8899999876632       0       1   1100   00 11 112222222       


Q ss_pred             cccccccchhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          170 AKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                                .+...+..|-+        ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       136 ----------qia~gl~yLH~--------~~iiHrDlKp~NILl~~~-~~~Kl~DFGla~  176 (299)
T d1jpaa_         136 ----------GIAAGMKYLAD--------MNYVHRDLAARNILVNSN-LVCKVSDFGLSR  176 (299)
T ss_dssp             ----------HHHHHHHHHHH--------TTCCCSCCCGGGEEECTT-CCEEECCC----
T ss_pred             ----------HHHHHHHHHhh--------CCCccCccccceEEECCC-CcEEECCcccce
Confidence                      22233344432        136999999999999874 689999999875

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=6.5e-06  Score=70.24  Aligned_cols=138  Identities=9%  Similarity=0.042  Sum_probs=79.0

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-ccccCh-HHHHHHHHHHHhCCCCceEEEEEC--C------
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EVFFNR-DDEIRTFECMSSQGQGPRLLGRFG--D------  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~--~------  107 (267)
                      .-++.|..|....||++....    ++..|.+|+-.... .....+ .+|+.+++.+....+. +++....  .      
T Consensus        11 ~~~~~LG~G~fg~Vy~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv-~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_          11 TNLSYIGEGAYGMVCSAYDNV----NKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENII-GINDIIRAPTIEQMKD   85 (345)
T ss_dssp             EEEEECC---CCCEEEEEETT----TCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBC-CCCEEECCSSTTTCCC
T ss_pred             EEEEEEeeccCeEEEEEEECC----CCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCC-cEEEEEeeccccccce
Confidence            457888889899999997543    35788898765432 111111 4799999998655443 3444432  1      


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                      ..+++++.|..+..              .+.. +.  .     +  ...+..+..+                 +...++.
T Consensus        86 ~~l~~~~~~g~L~~--------------~l~~-~~--l-----~--~~~i~~i~~q-----------------il~al~y  124 (345)
T d1pmea_          86 VYLVTHLMGADLYK--------------LLKT-QH--L-----S--NDHICYFLYQ-----------------ILRGLKY  124 (345)
T ss_dssp             EEEEEECCCEEHHH--------------HHHH-CC--C-----C--HHHHHHHHHH-----------------HHHHHHH
T ss_pred             EEEEEeecCCchhh--------------hhhc-CC--C-----C--HHHHHHHHHH-----------------HHHHHHH
Confidence            14566666644321              1110 11  1     1  1223333322                 2233444


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      |-+        ..++|+|++|.|||++++ +.+.|.||..|..
T Consensus       125 LH~--------~~iiHRDIKp~NILl~~~-~~~kl~DfG~a~~  158 (345)
T d1pmea_         125 IHS--------ANVLHRDLKPSNLLLNTT-CDLKICDFGLARV  158 (345)
T ss_dssp             HHH--------TTEECCCCCGGGEEECTT-CCEEECCCTTCEE
T ss_pred             HHH--------CCCcCCCCCcceEEECCC-CCEEEcccCceee
Confidence            443        249999999999999874 6899999997753

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=66.70  Aligned_cols=143  Identities=16%  Similarity=0.119  Sum_probs=82.4

Q ss_pred             CcEEEE--EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEECC-e--
Q 024452           36 DALQVI--PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFGD-G--  108 (267)
Q Consensus        36 ~~~~i~--~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~--  108 (267)
                      +.+.+.  .|..|.-..||+.......  .+..+.+|+....... . ..-.+|+.+++.+..-.+ .++++...+ .  
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~--~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~g~~~~~~~~   84 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI-VRLIGVCQAEALM   84 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC-----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTB-CCEEEEEESSSEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCC--CcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCE-eeEeeeeccCeEE
Confidence            445555  3788888999998653211  2345778876544321 1 112478888888853333 456776543 2  


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      +|+||++|.++..-                 ++....+    .+ ......+..                 .+...++.+
T Consensus        85 lvmE~~~~g~L~~~-----------------l~~~~~~----l~-~~~~~~i~~-----------------qi~~gL~yl  125 (285)
T d1u59a_          85 LVMEMAGGGPLHKF-----------------LVGKREE----IP-VSNVAELLH-----------------QVSMGMKYL  125 (285)
T ss_dssp             EEEECCTTEEHHHH-----------------HTTCTTT----SC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEEeCCCCcHHHH-----------------hhccccC----CC-HHHHHHHHH-----------------HHHHHHHHH
Confidence            89999998765320                 1111100    01 112222222                 222333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+        ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       126 H~--------~~iiHrDlKp~Nill~~~-~~~Kl~DFGla~  157 (285)
T d1u59a_         126 EE--------KNFVHRDLAARNVLLVNR-HYAKISDFGLSK  157 (285)
T ss_dssp             HH--------TTEECCCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             Hh--------CCeecCcCchhheeeccC-Cceeeccchhhh
Confidence            32        138999999999999974 689999999774

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.6e-06  Score=67.75  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             CcEEEE--EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc--cccC-hHHHHHHHHHHHhCCCCceEEEEECC-e-
Q 024452           36 DALQVI--PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE--VFFN-RDDEIRTFECMSSQGQGPRLLGRFGD-G-  108 (267)
Q Consensus        36 ~~~~i~--~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~--~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~~-~-  108 (267)
                      ..+.+.  .|..|.-..||+......  ..+..+.+|+......  ...+ -.+|+.+++.+..-.+ .++++.+.+ . 
T Consensus         6 ~~~~le~k~iG~G~fG~Vy~~~~~~~--~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~~~g~~~~~~~   82 (277)
T d1xbba_           6 KLLTLEDKELGSGNFGTVKKGYYQMK--KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI-VRMIGICEAESW   82 (277)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECS--SSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTB-CCEEEEEESSSE
T ss_pred             hhCeecCCCcccCCCeEEEEEEEccC--CcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCC-ceEEEEeccCCE
Confidence            345554  588888899999875321  1235677887643321  1111 1478888887743333 456666532 2 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++..       .       +   +... +    .. ......+..                 .+...++.
T Consensus        83 ~lvmE~~~~g~L~~-------~-------l---~~~~-~----l~-~~~~~~i~~-----------------qi~~gl~y  122 (277)
T d1xbba_          83 MLVMEMAELGPLNK-------Y-------L---QQNR-H----VK-DKNIIELVH-----------------QVSMGMKY  122 (277)
T ss_dssp             EEEEECCTTEEHHH-------H-------H---HHCT-T----CC-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEEcCCCCcHHH-------H-------H---hhcc-C----CC-HHHHHHHHH-----------------HHHHHHhh
Confidence             8899999876532       1       1   1100 0    01 112222222                 22333344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |-+.        .++|+|++|.|||++.+ +.+.+.||..|.
T Consensus       123 lH~~--------~iiHrDlKp~Nill~~~-~~~kl~DFGla~  155 (277)
T d1xbba_         123 LEES--------NFVHRDLAARNVLLVTQ-HYAKISDFGLSK  155 (277)
T ss_dssp             HHHT--------TEECSCCSGGGEEEEET-TEEEECCCTTCE
T ss_pred             HHhC--------CcccCCCcchhhccccc-Ccccccchhhhh
Confidence            4321        28999999999999974 678999999874

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.2e-05  Score=68.42  Aligned_cols=137  Identities=14%  Similarity=0.152  Sum_probs=78.0

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCccc--ccC-hHHHHHHHHHHHhCCCCceEEEEEC------C--
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEV--FFN-RDDEIRTFECMSSQGQGPRLLGRFG------D--  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~--~~d-r~~E~~~~~~l~~~gl~P~v~~~~~------~--  107 (267)
                      .+..|..|....||++....    ++..|.+|+.......  ... ..+|+++++.+...++. +++..+.      +  
T Consensus        22 i~~~LG~G~fg~Vy~a~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv-~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          22 NLSPVGSGAYGSVCAAFDTK----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVI-GLLDVFTPARSLEEFN   96 (348)
T ss_dssp             EEEECGGGTTSSEEEEEETT----TTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBC-CCSEEECSCSSTTTCC
T ss_pred             EEEEEecCCCeEEEEEEECC----CCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCee-eEEEEEeeccccccCc
Confidence            35778888889999997543    3578999987543211  111 14788998888644433 3444331      1  


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       ..+++++.|..+..           +   +   +....      . ...+..+..+                 +...++
T Consensus        97 ~~~i~~~~~gg~L~~-----------~---~---~~~~l------~-e~~~~~i~~q-----------------il~aL~  135 (348)
T d2gfsa1          97 DVYLVTHLMGADLNN-----------I---V---KCQKL------T-DDHVQFLIYQ-----------------ILRGLK  135 (348)
T ss_dssp             CCEEEEECCSEEHHH-----------H---H---TTCCC------C-HHHHHHHHHH-----------------HHHHHH
T ss_pred             eEEEEEeecCCchhh-----------h---c---ccccc------c-HHHHHHHHHH-----------------HHHHHH
Confidence             26778887754421           1   1   11110      1 1122223222                 223334


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .|-+        ..++|+|++|.|||++.+ +.+.++||..|..
T Consensus       136 ~LH~--------~giiHrDiKp~NILi~~~-~~~kl~dfg~a~~  170 (348)
T d2gfsa1         136 YIHS--------ADIIHRDLKPSNLAVNED-CELKILDFGLARH  170 (348)
T ss_dssp             HHHH--------TTCCCCCCCGGGEEECTT-CCEEECCC----C
T ss_pred             HHHh--------CCCcccccCCcccccccc-ccccccccchhcc
Confidence            4432        238999999999999874 7899999998754

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.93  E-value=2.7e-05  Score=64.76  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=48.4

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECCe----eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDG----RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~e~i~  115 (267)
                      .+.|..|.-..||++....    .+..+.+|+...... .-....|++.++.|....-.|.++..+..+    +|++++.
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~----~~~~vAvK~~~~~~~-~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~   84 (293)
T d1csna_          10 GRRIGEGSFGVIFEGTNLL----NNQQVAIKFEPRRSD-APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLG   84 (293)
T ss_dssp             EEEEEECSSCEEEEEEETT----TTEEEEEEEEECCTT-SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEecCCCeEEEEEEECC----CCCEEEEEEEccccC-cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecC
Confidence            5667777789999998543    357888998644321 112247899999988766667777776422    7788874

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=66.87  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=78.1

Q ss_pred             CcEEEEE-ecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-c-ccChHHHHHHHHHHHhCCCCceEEEEECCe----
Q 024452           36 DALQVIP-LKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-V-FFNRDDEIRTFECMSSQGQGPRLLGRFGDG----  108 (267)
Q Consensus        36 ~~~~i~~-l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~~~----  108 (267)
                      +.++... |..|.-..||++......+.....+.+|....... . ..+-.+|+.+++.+....+ -++++...+.    
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~~~g~~~~~~~~~   85 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI-IRLEGVISKYKPMM   85 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTB-CCEEEEECSSSSEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCE-eeeeEEEecCCceE
Confidence            5565544 57777789999876432111123577887644321 1 1112368888877754333 3566665422    


Q ss_pred             eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHH
Q 024452          109 RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISML  188 (267)
Q Consensus       109 ~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  188 (267)
                      ++++|++|..+..              .+.+-   ..    ... +.....+..                 .+...++.|
T Consensus        86 ~v~e~~~~~~l~~--------------~~~~~---~~----~~~-~~~~~~i~~-----------------~i~~gl~~l  126 (283)
T d1mqba_          86 IITEYMENGALDK--------------FLREK---DG----EFS-VLQLVGMLR-----------------GIAAGMKYL  126 (283)
T ss_dssp             EEEECCTTEEHHH--------------HHHHT---TT----CSC-HHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEEecccCcchh--------------hhhcc---cc----ccc-HHHHHHHHH-----------------HHHHhhhhc
Confidence            7899988644321              00000   00    011 111222222                 122333444


Q ss_pred             HHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          189 EKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       189 ~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      -+        ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       127 H~--------~~iiHrDlKp~NILl~~~-~~~Kl~DFGla~  158 (283)
T d1mqba_         127 AN--------MNYVHRDLAARNILVNSN-LVCKVSDFGLSR  158 (283)
T ss_dssp             HH--------TTCCCSCCCGGGEEECTT-CCEEECCCCC--
T ss_pred             cc--------cccccCccccceEEECCC-CeEEEcccchhh
Confidence            32        238999999999999974 689999999885

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.1e-05  Score=68.14  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECCe----eEE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG----RVE  111 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~----~v~  111 (267)
                      ...|..|....||++....    .+..|.+|+.....   .... ....|..++...-++.-..+++..+.++    +|+
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~----t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivm   82 (320)
T d1xjda_           7 HKMLGKGSFGKVFLAEFKK----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVM   82 (320)
T ss_dssp             EEEEEECSSSEEEEEEETT----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             eeEEecCCCcEEEEEEECC----CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEE
Confidence            5667778788999998653    35788899864321   1111 1124555554444444456677765432    899


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ||++|..+..              .+.+-..  .     +  ......+..                 .+...++.|-+ 
T Consensus        83 Ey~~~g~L~~--------------~i~~~~~--~-----~--e~~~~~~~~-----------------qi~~al~ylH~-  121 (320)
T d1xjda_          83 EYLNGGDLMY--------------HIQSCHK--F-----D--LSRATFYAA-----------------EIILGLQFLHS-  121 (320)
T ss_dssp             ECCTTCBHHH--------------HHHHHSS--C-----C--HHHHHHHHH-----------------HHHHHHHHHHH-
T ss_pred             eecCCCcHHH--------------HhhccCC--C-----C--HHHHHHHHH-----------------HHHHHHHHHHh-
Confidence            9999865532              1111000  0     1  112222322                 22334444443 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                             ..++|+|++|.|||++++ +.+.++||..|..
T Consensus       122 -------~~iiHrDikp~NiL~~~~-~~~kl~DFG~a~~  152 (320)
T d1xjda_         122 -------KGIVYRDLKLDNILLDKD-GHIKIADFGMCKE  152 (320)
T ss_dssp             -------TTCBCCCCCGGGEEECTT-SCEEECCCTTCBC
T ss_pred             -------CCeeeccCcccceeecCC-Cceeccccchhhh
Confidence                   249999999999999974 7899999998863

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=8.1e-06  Score=66.87  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEECC--e--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGD--G--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~e~i~  115 (267)
                      .+.|..|--..||++...+     +..+.+|....+....-+-.+|+.++..+..-. .-++++.+.+  .  +|+||++
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~Hpn-Iv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           9 LKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCEETTEEEEEEEETT-----TEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTT-BCCEEEEECCSSSEEEEEECCT
T ss_pred             eEEEecCCCeEEEEEEECC-----CCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCc-eeeEEEEEeeCCceEEEEEccC
Confidence            3456777788999998642     457878876544321112247888887774323 3456666542  2  7899998


Q ss_pred             CCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCCC
Q 024452          116 ARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPND  195 (267)
Q Consensus       116 G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~  195 (267)
                      |..+....                 +....+     -.......+..                 .+.+.++.|.+     
T Consensus        83 ~g~l~~~~-----------------~~~~~~-----~~~~~~~~i~~-----------------qi~~gl~~LH~-----  118 (258)
T d1k2pa_          83 NGCLLNYL-----------------REMRHR-----FQTQQLLEMCK-----------------DVCEAMEYLES-----  118 (258)
T ss_dssp             TEEHHHHH-----------------HSGGGC-----CCHHHHHHHHH-----------------HHHHHHHHHHH-----
T ss_pred             CCcHHHhh-----------------hccccC-----CcHHHHHHHHH-----------------HHHHHHHHHhh-----
Confidence            76553210                 000000     00111222221                 22334444432     


Q ss_pred             CCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          196 HQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       196 ~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                         ..++|+|++|.||+++++ +.+.|.||..|.
T Consensus       119 ---~~iiH~dlk~~Nill~~~-~~~kl~DfG~a~  148 (258)
T d1k2pa_         119 ---KQFLHRDLAARNCLVNDQ-GVVKVSDFGLSR  148 (258)
T ss_dssp             ---TTBCCSCCSGGGEEECTT-CCEEECCCSSCC
T ss_pred             ---cCcccccccceeEEEcCC-CcEEECcchhhe
Confidence               238999999999999974 688999999874

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=97.86  E-value=7.9e-06  Score=67.69  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccCh-HHHHHHHHHHHhCCCCceEEEEECC--e--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNR-DDEIRTFECMSSQGQGPRLLGRFGD--G--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~~--~--~v~  111 (267)
                      .+..|..|....||++...     .+..|.+|+.....  .....+ .+|+.+++.+....+ .+++..+.+  .  +++
T Consensus         6 ~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           6 GLEKIGEGTYGVVYKAQNN-----YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI-VKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             EEEEEEEETTEEEEEEEET-----TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTB-CCEEEEEECSSCEEEEE
T ss_pred             eccEEecCCCcEEEEEEeC-----CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcE-EeeeeecccCCceeEEE
Confidence            5778888888999999754     25789999875432  111222 478888877754333 345555432  2  667


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ++..|..+.                  .++...   .. . ....+..+..+                 +...++.|-+.
T Consensus        80 e~~~~~~~~------------------~~~~~~---~~-l-~~~~~~~i~~q-----------------i~~~L~~LH~~  119 (286)
T d1ob3a_          80 EHLDQDLKK------------------LLDVCE---GG-L-ESVTAKSFLLQ-----------------LLNGIAYCHDR  119 (286)
T ss_dssp             ECCSEEHHH------------------HHHTST---TC-C-CHHHHHHHHHH-----------------HHHHHHHHHHT
T ss_pred             EeehhhhHH------------------HHHhhc---CC-c-chhhhHHHHHH-----------------HHHHHHHhccC
Confidence            777652111                  011111   00 0 11122223222                 22334444431


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                              .++|+|++|.|||++.+ +.+.++||..|..
T Consensus       120 --------~IvHrDiKp~NIll~~~-~~~kl~DfG~a~~  149 (286)
T d1ob3a_         120 --------RVLHRDLKPQNLLINRE-GELKIADFGLARA  149 (286)
T ss_dssp             --------TCCCSCCCGGGEEECTT-SCEEECCTTHHHH
T ss_pred             --------cEEecCCCCceeeEcCC-CCEEeccccccee
Confidence                    28999999999999874 6899999998854

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.8e-05  Score=63.93  Aligned_cols=141  Identities=12%  Similarity=0.064  Sum_probs=79.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC---cccccChHHHHHHHHHHHhC--CCCceEEEEEC-----C-
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG---VEVFFNRDDEIRTFECMSSQ--GQGPRLLGRFG-----D-  107 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~---~~~~~dr~~E~~~~~~l~~~--gl~P~v~~~~~-----~-  107 (267)
                      -+..|..|.-..||++....+   .+..+.+|+....   ........+|+.+++.|+..  --..+++..+.     . 
T Consensus        11 i~~~LG~G~fg~V~~a~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~   87 (305)
T d1blxa_          11 CVAEIGEGAYGKVFKARDLKN---GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   87 (305)
T ss_dssp             EEEEEEEETTEEEEEEEETTT---TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSE
T ss_pred             EEEEEecccCeEEEEEEEECC---CCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccC
Confidence            466778888899999975321   1344667765321   11122335799999998753  22345555431     1 


Q ss_pred             e---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 G---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ~---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                      +   +++++++|..+..               +...+..     .  -....+..+..+                 +...
T Consensus        88 ~~~~~~~e~~~~~~~~~---------------~~~~~~~-----~--~~~~~~~~~~~q-----------------i~~a  128 (305)
T d1blxa_          88 TKLTLVFEHVDQDLTTY---------------LDKVPEP-----G--VPTETIKDMMFQ-----------------LLRG  128 (305)
T ss_dssp             EEEEEEEECCSCBHHHH---------------HHHSCTT-----C--SCHHHHHHHHHH-----------------HHHH
T ss_pred             ceEEEEEEeccCCchhh---------------hhhccCC-----C--CCHHHHHHHHHH-----------------HHHH
Confidence            1   6788888743311               0000100     0  011222223222                 2233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.|-+        ..++|+|++|.|||++++ +.+.++||..+..
T Consensus       129 L~yLH~--------~~ivHrDiKp~NILi~~~-~~~kl~dfg~~~~  165 (305)
T d1blxa_         129 LDFLHS--------HRVVHRDLKPQNILVTSS-GQIKLADFGLARI  165 (305)
T ss_dssp             HHHHHH--------TTCCCCCCCGGGEEECTT-CCEEECSCCSCCC
T ss_pred             HHHHHh--------CCEEecCCCccEEEEcCC-CCeeecchhhhhh
Confidence            344432        239999999999999874 6899999998764

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.5e-05  Score=64.51  Aligned_cols=137  Identities=12%  Similarity=0.037  Sum_probs=79.9

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccCh-HHHHHHHHHHHhCCCCceEEEEEC--Ce--eEE
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNR-DDEIRTFECMSSQGQGPRLLGRFG--DG--RVE  111 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~  111 (267)
                      -+..|..|....||++....    ++..|.+|+.....  .....+ .+|+.+++.+....+. +++....  +.  +++
T Consensus         6 ~i~~LG~G~fg~V~~~~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv-~~~~~~~~~~~~~iv~   80 (292)
T d1unla_           6 KLEKIGEGTYGTVFKAKNRE----THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIV-RLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBC-CEEEEEECSSEEEEEE
T ss_pred             eeeEEecCcCeEEEEEEECC----CCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEE-eeccccccccceeEEe
Confidence            46778778788999998643    35778899864322  112222 4788888877654433 3455443  22  677


Q ss_pred             EeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHh
Q 024452          112 EFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKE  191 (267)
Q Consensus       112 e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  191 (267)
                      ++..|..+..              .+ .-+.        ......+..+..+                 +...++.|-+ 
T Consensus        81 ~~~~~~~l~~--------------~~-~~~~--------~~~~~~~~~~~~q-----------------~~~aL~~lH~-  119 (292)
T d1unla_          81 EFCDQDLKKY--------------FD-SCNG--------DLDPEIVKSFLFQ-----------------LLKGLGFCHS-  119 (292)
T ss_dssp             ECCSEEHHHH--------------HH-HTTT--------CCCHHHHHHHHHH-----------------HHHHHHHHHH-
T ss_pred             eecccccccc--------------cc-cccc--------ccchhHHHHHHHH-----------------HHHHHHHhhc-
Confidence            7776643321              00 0010        0111223333322                 2223344432 


Q ss_pred             CCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          192 LPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       192 l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                             ..++|+|++|+|||++.+ +.+.++||..|.
T Consensus       120 -------~~IvHrDiKP~NIli~~~-~~~kl~DFG~a~  149 (292)
T d1unla_         120 -------RNVLHRDLKPQNLLINRN-GELKLANFGLAR  149 (292)
T ss_dssp             -------TTEECCCCSGGGEEECTT-CCEEECCCTTCE
T ss_pred             -------CCEeeecccCcccccccC-Cceeeeecchhh
Confidence                   249999999999999874 689999999885

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.2e-06  Score=67.37  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=80.1

Q ss_pred             CcEEE-EEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEE-C-C---ee
Q 024452           36 DALQV-IPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRF-G-D---GR  109 (267)
Q Consensus        36 ~~~~i-~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~-~-~---~~  109 (267)
                      +++++ +.|..|--..||++...      +..+.+|....... .-+-.+|+++++.+. +--.-++++.+ . +   .+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~vAvK~i~~~~~-~~~~~~E~~~l~~l~-HpnIv~~~g~~~~~~~~~~l   78 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDAT-AQAFLAEASVMTQLR-HSNLVQLLGVIVEEKGGLYI   78 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET------TEEEEEEECCCCC---HHHHHTHHHHTTCC-CTTBCCEEEEECCC--CCEE
T ss_pred             HHeEEeEEEecCCCeEEEEEEEC------CeEEEEEEECcHHH-HHHHHHHHHHHHhCC-CCCEeeEEEEEEecCCcEEE
Confidence            44554 44677777899999863      36899998754421 111247888887774 33344567654 2 2   28


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|.++..       ....-      -+. ..       ....+..+..+                 +...+..|.
T Consensus        79 v~ey~~~g~L~~-------~l~~~------~~~-~l-------~~~~~~~i~~~-----------------i~~al~ylH  120 (262)
T d1byga_          79 VTEYMAKGSLVD-------YLRSR------GRS-VL-------GGDCLLKFSLD-----------------VCEAMEYLE  120 (262)
T ss_dssp             EECCCTTEEHHH-------HHHHH------HHH-HC-------CHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEeccCCCCHHH-------HHHhc------CCC-CC-------CHHHHHHHHHH-----------------HHhhccccc
Confidence            999999876642       11100      000 00       01112222221                 222333443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCcc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQN  231 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~~  231 (267)
                      +        ..++|+|++|.|||++.+ +.+.+.||..+...
T Consensus       121 ~--------~~ivH~dlkp~Nil~~~~-~~~kl~dfg~s~~~  153 (262)
T d1byga_         121 G--------NNFVHRDLAARNVLVSED-NVAKVSDFGLTKEA  153 (262)
T ss_dssp             H--------TTCCCSCCSGGGEEECTT-SCEEECCCCC----
T ss_pred             c--------CceeccccchHhheecCC-CCEeecccccceec
Confidence            2        238999999999999974 67899999988753

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.5e-05  Score=67.12  Aligned_cols=143  Identities=17%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-cc-cChHHHHHHHHHHHhCCCCceEEEEECCe---eEEE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VF-FNRDDEIRTFECMSSQGQGPRLLGRFGDG---RVEE  112 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~-~dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~v~e  112 (267)
                      -.+..|..|.-..||++....++.....++.+|....... .. ..-.+|+.+++.+..-. ..++++.+.++   .+++
T Consensus        12 ~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~g~~~~~~~~~v~e   90 (317)
T d1xkka_          12 KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH-VCRLLGICLTSTVQLITQ   90 (317)
T ss_dssp             EEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTT-BCCEEEEEESSSEEEEEE
T ss_pred             EEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCeeEEEE
Confidence            3456778888899999976431100123577776543321 11 11147888888885333 34566665332   7788


Q ss_pred             eecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhC
Q 024452          113 FIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKEL  192 (267)
Q Consensus       113 ~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l  192 (267)
                      +++|..+..              .+.+ +....       .......|..                 .+...+..|-+  
T Consensus        91 ~~~~~~l~~--------------~~~~-~~~~~-------~~~~~~~i~~-----------------qi~~gl~yLH~--  129 (317)
T d1xkka_          91 LMPFGCLLD--------------YVRE-HKDNI-------GSQYLLNWCV-----------------QIAKGMNYLED--  129 (317)
T ss_dssp             CCTTCBHHH--------------HHHH-TSSSC-------CHHHHHHHHH-----------------HHHHHHHHHHH--
T ss_pred             eccCCcccc--------------cccc-cccCC-------CHHHHHHHHH-----------------HHHHHHHHHHH--
Confidence            887654421              0000 11100       1112222222                 12233444432  


Q ss_pred             CCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          193 PNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       193 ~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                            ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       130 ------~~iiHrDlKp~NIll~~~-~~~kl~DFGla~  159 (317)
T d1xkka_         130 ------RRLVHRDLAARNVLVKTP-QHVKITDFGLAK  159 (317)
T ss_dssp             ------TTCCCSCCCGGGEEEEET-TEEEECCCSHHH
T ss_pred             ------cCcccCcchhhcceeCCC-CCeEeeccccce
Confidence                  138999999999999974 678999999774

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.2e-05  Score=65.51  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCC---CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC-e
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNN---GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD-G  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~---~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~-~  108 (267)
                      +.++ ...|..|--..||+++....+.   .....|.+|....+...  .....+|...+..+.++.-..++++.+.+ +
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            4555 4667888888999997532110   11235778876554321  12224677777777666555667776542 2


Q ss_pred             ---eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCC--------CCCCCchhHHHHHHHHHHHhhccCcccccccc
Q 024452          109 ---RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM--------PGPRKALLWDRLRKWVSVAKSFCSAKDAKEFC  177 (267)
Q Consensus       109 ---~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  177 (267)
                         +|+||++|..+..-              +. .+....        ......-....+..|..               
T Consensus        93 ~~~~v~e~~~~g~l~~~--------------i~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------  142 (299)
T d1fgka_          93 PLYVIVEYASKGNLREY--------------LQ-ARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY---------------  142 (299)
T ss_dssp             SCEEEECCCTTCBHHHH--------------HH-TTSCC------------CCCCCHHHHHHHHH---------------
T ss_pred             eEEEEEEccCCCcHHHH--------------HH-hhcCCccccccccccCccccCCHHHHHHHHH---------------
Confidence               88999998765420              00 000000        00000001111222221               


Q ss_pred             hhhHHHHHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          178 LYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       178 ~~~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                        .+...++.+.+        ..++|+|++|.|||++.+ +.+.|.||..+.
T Consensus       143 --qi~~al~ylH~--------~~ivHrDiKp~NiLl~~~-~~~kl~dfg~~~  183 (299)
T d1fgka_         143 --QVARGMEYLAS--------KKCIHRDLAARNVLVTED-NVMKIADFGLAR  183 (299)
T ss_dssp             --HHHHHHHHHHH--------TTCCCSCCSGGGEEECTT-CCEEECSTTCCC
T ss_pred             --HHHHHHHHhhh--------CCEEeeeecccceeecCC-CCeEeccchhhc
Confidence              22233344432        237999999999999874 689999998765

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.9e-05  Score=65.16  Aligned_cols=137  Identities=20%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccC-hHHHHHHHHHHHhCCCCceEEEEEC--C-----
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--D-----  107 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~-----  107 (267)
                      ..+..|..|....||++....    ++..|.+|+.....  ..... ..+|+++++.+....+. +++..+.  +     
T Consensus        21 ~~i~~lG~G~fg~V~~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv-~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          21 RDLQPVGSGAYGAVCSAVDGR----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVI-GLLDVFTPDETLDDF   95 (346)
T ss_dssp             EEEEEC------CEEEEEETT----TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBC-CCSEEECSCSSTTTC
T ss_pred             EEEEEEecCCCeEEEEEEECC----CCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCee-EEEEEeccCcccccc
Confidence            357778888899999998543    35788999875432  11111 14788888888543332 4444432  1     


Q ss_pred             ---eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHH
Q 024452          108 ---GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDE  184 (267)
Q Consensus       108 ---~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (267)
                         .+|++|+++ .+           ..+.+      ....      + ...+..+..+                 +...
T Consensus        96 ~~~~lv~e~~~~-~l-----------~~~~~------~~~l------~-~~~~~~~~~q-----------------i~~a  133 (346)
T d1cm8a_          96 TDFYLVMPFMGT-DL-----------GKLMK------HEKL------G-EDRIQFLVYQ-----------------MLKG  133 (346)
T ss_dssp             CCCEEEEECCSE-EH-----------HHHHH------HCCC------C-HHHHHHHHHH-----------------HHHH
T ss_pred             ceEEEEEecccc-cH-----------HHHHH------hccc------c-HHHHHHHHHH-----------------HHHH
Confidence               277888731 11           11110      1111      1 1122223222                 2233


Q ss_pred             HHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          185 ISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       185 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      ++.|-+        ..++|+|++|.|||++.+ +.+.+.||..|..
T Consensus       134 L~~LH~--------~~IiHrDiKp~NIL~~~~-~~~kl~Dfg~a~~  170 (346)
T d1cm8a_         134 LRYIHA--------AGIIHRDLKPGNLAVNED-CELKILDFGLARQ  170 (346)
T ss_dssp             HHHHHH--------TTEECCCCCGGGEEECTT-CCEEECCCTTCEE
T ss_pred             HHHHHh--------CCCcccccCcchhhcccc-cccccccccceec
Confidence            344432        249999999999999974 6899999998753

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.7e-05  Score=63.27  Aligned_cols=29  Identities=24%  Similarity=0.193  Sum_probs=21.5

Q ss_pred             EEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          200 GFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       200 ~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++|+|++|.|||++++ +.+.|.||..|.
T Consensus       154 ~ivHrDlKp~NILl~~~-~~~Kl~DFGla~  182 (299)
T d1ywna1         154 KCIHRDLAARNILLSEK-NVVKICDFGLAR  182 (299)
T ss_dssp             TCCCSCCCGGGEEECGG-GCEEECC-----
T ss_pred             CCcCCcCCccceeECCC-CcEEEccCcchh
Confidence            38999999999999874 689999999773

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.2e-05  Score=63.92  Aligned_cols=140  Identities=11%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc----ccccC-hHHHHHHHHHHHhCCCCceEEEEEC--Ce--eE
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV----EVFFN-RDDEIRTFECMSSQGQGPRLLGRFG--DG--RV  110 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~----~~~~d-r~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v  110 (267)
                      ++.|..|.-..||++..... ...+..|.+|+.....    ....+ -.+|+++++.+..+....+++....  +.  ++
T Consensus        29 ~~~IG~G~fg~Vy~~~~~~~-~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v  107 (322)
T d1vzoa_          29 LKVLGTGAYGKVFLVRKISG-HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLI  107 (322)
T ss_dssp             EEEEEETTTEEEEEEEECSS-TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEEecCCCeEEEEEEECcc-CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeee
Confidence            57788888999999974221 1135688899864321    01111 1379999999988755566666553  33  78


Q ss_pred             EEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHH
Q 024452          111 EEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEK  190 (267)
Q Consensus       111 ~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  190 (267)
                      ++|++|..+...              +..-+.       .+  ......+..+                 +...++.+.+
T Consensus       108 ~e~~~~~~L~~~--------------i~~~~~-------~~--e~~~~~~~~Q-----------------i~~al~~lH~  147 (322)
T d1vzoa_         108 LDYINGGELFTH--------------LSQRER-------FT--EHEVQIYVGE-----------------IVLALEHLHK  147 (322)
T ss_dssp             ECCCCSCBHHHH--------------HHHHSC-------CC--HHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred             eecccccHHHHH--------------HHhccc-------cc--HHHHHHHHHH-----------------HHHHHHHhhc
Confidence            899887665320              000000       01  1122223222                 2223334432


Q ss_pred             hCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          191 ELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       191 ~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                              ..++|+|++|.|||++.+ +.+.|+||..|.
T Consensus       148 --------~~ivHrDiKp~Nill~~~-~~vkL~DFG~a~  177 (322)
T d1vzoa_         148 --------LGIIYRDIKLENILLDSN-GHVVLTDFGLSK  177 (322)
T ss_dssp             --------TTCCCCCCCGGGEEECTT-SCEEESCSSEEE
T ss_pred             --------CCEEeccCCccceeecCC-CCEEEeeccchh
Confidence                    238999999999999974 689999999885

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.5e-05  Score=64.18  Aligned_cols=145  Identities=13%  Similarity=0.093  Sum_probs=75.0

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcc-ccc-ChHHHHHHHHHHHhCCCCceEEEEECCe---e
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVE-VFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG---R  109 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~-~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~---~  109 (267)
                      +.++ ...|..|.-..||++...... .....+.+|....... ... .-.+|+.+++.+.. --..++++.+.++   +
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~-~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~H-pnIv~l~~~~~~~~~~i   84 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPE-NPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH-PHIVKLIGVITENPVWI   84 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCC-TTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCC-ceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCC-CCEeeEEEEEecCeEEE
Confidence            3444 455677778999998754211 1123455666543221 111 11367777777743 2234577766543   8


Q ss_pred             EEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHH
Q 024452          110 VEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLE  189 (267)
Q Consensus       110 v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  189 (267)
                      |+||++|..+..           .   +.+   ...+    .. ......+..+                 +.+.+..+.
T Consensus        85 v~E~~~~g~l~~-----------~---~~~---~~~~----l~-~~~~~~~~~q-----------------i~~gl~ylH  125 (273)
T d1mp8a_          85 IMELCTLGELRS-----------F---LQV---RKYS----LD-LASLILYAYQ-----------------LSTALAYLE  125 (273)
T ss_dssp             EEECCTTEEHHH-----------H---HHH---TTTT----SC-HHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             EEEeccCCcHHh-----------h---hhc---cCCC----CC-HHHHHHHHHH-----------------HHHHhhhhc
Confidence            899998755431           0   000   0000    01 1122222222                 222334443


Q ss_pred             HhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          190 KELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       190 ~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      +        ..++|+|++|.||+++.+ +.+.|+||..|..
T Consensus       126 ~--------~~iiHrDlKp~NIll~~~-~~~Kl~DfG~a~~  157 (273)
T d1mp8a_         126 S--------KRFVHRDIAARNVLVSSN-DCVKLGDFGLSRY  157 (273)
T ss_dssp             H--------TTCCCSCCSGGGEEEEET-TEEEECC------
T ss_pred             c--------cCeeccccchhheeecCC-CcEEEccchhhee
Confidence            2        237899999999999974 6899999998754

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=9.1e-05  Score=61.40  Aligned_cols=72  Identities=13%  Similarity=0.008  Sum_probs=48.9

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhCCCCceEEEEEC--Ce--eEEEeec
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFG--DG--RVEEFIH  115 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~--~v~e~i~  115 (267)
                      .+.|..|.-..||++....    ++..+.+|+...... ......|.++++.+......+.+.....  +.  +|++|++
T Consensus        12 ~~~iG~G~fG~Vy~a~~~~----~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_          12 GRKIGSGSFGDIYLGTDIA----AGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             EEEEEECSSSEEEEEEETT----TTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             eEEEeeCCCcEEEEEEECC----CCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC
Confidence            5667888889999997543    357888997644321 1122479999999887766676666543  22  7889886


Q ss_pred             C
Q 024452          116 A  116 (267)
Q Consensus       116 G  116 (267)
                      |
T Consensus        87 ~   87 (299)
T d1ckia_          87 P   87 (299)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=2.6e-05  Score=65.11  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             EEEEEecCceeeeeEEEEeCCCCC-CCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----eeE
Q 024452           38 LQVIPLKGAMTNEVYQIAWPAKNN-GLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----GRV  110 (267)
Q Consensus        38 ~~i~~l~~G~~N~vy~v~~~~~~~-~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----~~v  110 (267)
                      --+..|..|.-..||+++.....+ .++..+.+|+.......  ..+-.+|+++++.+....+. +.++....    ..+
T Consensus        16 ~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv-~~~~~~~~~~~~~~v   94 (301)
T d1lufa_          16 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIV-KLLGVCAVGKPMCLL   94 (301)
T ss_dssp             EEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBC-CEEEEECSSSSCEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcc-cceeeeccCCceEEE
Confidence            346778888889999998642111 12356778876543211  11124788888887544433 34554432    288


Q ss_pred             EEeecCCCCC
Q 024452          111 EEFIHARTLS  120 (267)
Q Consensus       111 ~e~i~G~~l~  120 (267)
                      ++|++|..+.
T Consensus        95 ~e~~~~g~L~  104 (301)
T d1lufa_          95 FEYMAYGDLN  104 (301)
T ss_dssp             EECCTTCBHH
T ss_pred             EEecCCCcHH
Confidence            9999876653

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.9e-05  Score=66.31  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc--ccccCh-HHHHHHHHHHHhCCCCceEEEEEC--------C-
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV--EVFFNR-DDEIRTFECMSSQGQGPRLLGRFG--------D-  107 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~--~~~~dr-~~E~~~~~~l~~~gl~P~v~~~~~--------~-  107 (267)
                      +..|..|....||++....    .+..|.+|+.....  .....+ .+|+.+++.+....+ .+.+..+.        + 
T Consensus        22 ~~~LG~G~fg~V~~~~d~~----t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnI-v~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAV----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI-ISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             EEECSCC--CEEEEEEETT----TTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTB-CCCSEEECSCCSTTTCCE
T ss_pred             EEEeecCcCeEEEEEEECC----CCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCe-eEEEEEEecccccccCce
Confidence            5678888889999997543    35788999875432  111112 478888877743333 33444431        1 


Q ss_pred             -eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHH
Q 024452          108 -GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEIS  186 (267)
Q Consensus       108 -~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (267)
                       .+|+||+.|..+.                  .++..       . ....++.+..+                 +...++
T Consensus        97 ~~iv~Ey~~~~l~~------------------~~~~~-------~-~~~~i~~~~~q-----------------il~gl~  133 (355)
T d2b1pa1          97 VYLVMELMDANLCQ------------------VIQME-------L-DHERMSYLLYQ-----------------MLCGIK  133 (355)
T ss_dssp             EEEEEECCSEEHHH------------------HHTSC-------C-CHHHHHHHHHH-----------------HHHHHH
T ss_pred             eEEEEeccchHHHH------------------hhhcC-------C-CHHHHHHHHHH-----------------HHHHHH
Confidence             1789998764221                  11111       0 11233333332                 222333


Q ss_pred             HHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccCc
Q 024452          187 MLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFLQ  230 (267)
Q Consensus       187 ~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~~  230 (267)
                      .|-+        ..++|+|++|.|||++.+ +.+.++||..+..
T Consensus       134 ~LH~--------~giiHrDlKP~Nil~~~~-~~~kl~df~~~~~  168 (355)
T d2b1pa1         134 HLHS--------AGIIHRDLKPSNIVVKSD-CTLKILDFGLART  168 (355)
T ss_dssp             HHHH--------TTCCCSCCCGGGEEECTT-CCEEECCCCC---
T ss_pred             Hhhh--------cccccccCCccccccccc-cceeeechhhhhc
Confidence            4432        238999999999999974 6789999987653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.4e-05  Score=61.07  Aligned_cols=144  Identities=19%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc---cccc-ChHHHHHHHHHHHhCCCCceEEEEECCe--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV---EVFF-NRDDEIRTFECMSSQGQGPRLLGRFGDG--  108 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~---~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~~~~--  108 (267)
                      ++++ +..|..|....||++...... +....+.+|+..+..   .... +-.+|+.+++.+. +--..++++.+.+.  
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~-~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~-H~nIv~~~g~~~~~~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPS-GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD-HRNLIRLYGVVLTPPM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTT-SCEEEEEEEC--------CHHHHHHHHHHHHHHHCC-CTTBCCEEEEECSSSC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCC-CcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCC-CCCEEEEEEEEeecch
Confidence            3344 566788888999999754211 112356677664431   1111 1247888888884 33335677766533  


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||.+|..+...              +.. +....      . ......+..                 .+...+..
T Consensus        86 ~lv~e~~~~~~l~~~--------------~~~-~~~~l------~-~~~~~~~~~-----------------qi~~gl~y  126 (273)
T d1u46a_          86 KMVTELAPLGSLLDR--------------LRK-HQGHF------L-LGTLSRYAV-----------------QVAEGMGY  126 (273)
T ss_dssp             EEEEECCTTCBHHHH--------------HHH-HGGGS------C-HHHHHHHHH-----------------HHHHHHHH
T ss_pred             heeeeeecCcchhhh--------------hhc-ccCCC------C-HHHHHHHHH-----------------HHHHHHHH
Confidence             88999987543210              000 11000      0 111222222                 22333444


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |-+        ..++|+|++|.||+++.+ +.+.|.||..|.
T Consensus       127 lH~--------~~iiHrDikp~NIll~~~-~~vkl~DfGl~~  159 (273)
T d1u46a_         127 LES--------KRFIHRDLAARNLLLATR-DLVKIGDFGLMR  159 (273)
T ss_dssp             HHH--------TTEECSCCCGGGEEEEET-TEEEECCCTTCE
T ss_pred             hhh--------CCEeeeeecHHHhccccc-cceeeccchhhh
Confidence            443        138999999999999974 689999998664

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00024  Score=59.26  Aligned_cols=137  Identities=11%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             EEEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCC--ccccc-ChHHHHHHHHHHHhCCCCceEEEEE----------
Q 024452           39 QVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEG--VEVFF-NRDDEIRTFECMSSQGQGPRLLGRF----------  105 (267)
Q Consensus        39 ~i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~--~~~~~-dr~~E~~~~~~l~~~gl~P~v~~~~----------  105 (267)
                      -+..|..|....||++....    ++..|.+|+....  .+... ...+|+.+++.++..++. +.+...          
T Consensus        14 i~~~LG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii-~~~~~~~~~~~~~~~~   88 (318)
T d3blha1          14 KLAKIGQGTFGEVFKARHRK----TGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVV-NLIEICRTKASPYNRC   88 (318)
T ss_dssp             EEEEEEECSSSEEEEEEETT----TCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBC-CEEEEEEC--------
T ss_pred             EEEEEecCcCeEEEEEEECC----CCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCcc-ceEeeeeccccccccc
Confidence            45788888889999998643    3578999976432  11121 124899999998654443 333322          


Q ss_pred             CC--eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHH
Q 024452          106 GD--GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKD  183 (267)
Q Consensus       106 ~~--~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (267)
                      ++  .++++++++..+...                   ...  ...  .....+..+..                 .+..
T Consensus        89 ~~~~~iv~e~~~~~~~~~~-------------------~~~--~~~--~~~~~~~~i~~-----------------qil~  128 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLL-------------------SNV--LVK--FTLSEIKRVMQ-----------------MLLN  128 (318)
T ss_dssp             --CEEEEEECCCEEHHHHH-------------------TCT--TCC--CCHHHHHHHHH-----------------HHHH
T ss_pred             CceEEEEEeccCCCccchh-------------------hhc--ccc--cccHHHHHHHH-----------------HHHH
Confidence            11  166777664322100                   000  000  01112222222                 1223


Q ss_pred             HHHHHHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          184 EISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       184 ~~~~l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      .++.+.+        ..++|+|++|.|||++++ +.+.+.||..|.
T Consensus       129 ~l~~lH~--------~~ivHrDlKp~NILl~~~-~~~kl~dfg~~~  165 (318)
T d3blha1         129 GLYYIHR--------NKILHRDMKAANVLITRD-GVLKLADFGLAR  165 (318)
T ss_dssp             HHHHHHH--------TTEECCCCCGGGEEECTT-SCEEECCCTTCE
T ss_pred             HHHHhcc--------CCEEecCcCchheeecCC-CcEEeeecceee
Confidence            3344432        248999999999999974 689999999873

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=61.32  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             CcEEEE-EecCceeeeeEEEEeCCC-CCCCCceEEEEEcCCCccc--ccChHHHHHHHHHHHhCCCCceEEEEECC----
Q 024452           36 DALQVI-PLKGAMTNEVYQIAWPAK-NNGLARNVLVRIYGEGVEV--FFNRDDEIRTFECMSSQGQGPRLLGRFGD----  107 (267)
Q Consensus        36 ~~~~i~-~l~~G~~N~vy~v~~~~~-~~~~~~~~vlRi~~~~~~~--~~dr~~E~~~~~~l~~~gl~P~v~~~~~~----  107 (267)
                      +.+++. .|..|--..||+++.... ....+..+.+|........  .....+|+.+++.+.++.-.-++++.+.+    
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~  102 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEE
Confidence            556654 468888899999975321 1123467888876543311  11123688888888766555567777653    


Q ss_pred             eeEEEeecCCCC
Q 024452          108 GRVEEFIHARTL  119 (267)
Q Consensus       108 ~~v~e~i~G~~l  119 (267)
                      .+++||++|..+
T Consensus       103 ~lvmE~~~~g~l  114 (311)
T d1t46a_         103 LVITEYCCYGDL  114 (311)
T ss_dssp             EEEEECCTTEEH
T ss_pred             EEEEEcCCCCCH
Confidence            289999998664

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.7e-05  Score=63.70  Aligned_cols=156  Identities=12%  Similarity=0.033  Sum_probs=79.5

Q ss_pred             cEEE-EEecCceeeeeEEEEeCCCCCCCCce--EEEEEcCCC-ccc-ccChHHHHHHHHHHHhCCCCceEEEEEC--Ce-
Q 024452           37 ALQV-IPLKGAMTNEVYQIAWPAKNNGLARN--VLVRIYGEG-VEV-FFNRDDEIRTFECMSSQGQGPRLLGRFG--DG-  108 (267)
Q Consensus        37 ~~~i-~~l~~G~~N~vy~v~~~~~~~~~~~~--~vlRi~~~~-~~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~~--~~-  108 (267)
                      .+++ ..|..|.-..||++....+    +..  +.+|..... ... ...-.+|++++..+.++--..++++.+.  +. 
T Consensus        11 ~~~~~~~iG~G~fg~Vy~~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_          11 DIKFQDVIGEGNFGQVLKARIKKD----GLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEET----TEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HcEEEEEEeeCCCcEEEEEEECCC----CeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            4444 5678888899999986431    233  334432221 111 1112478888888765544455666543  22 


Q ss_pred             -eEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          109 -RVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       109 -~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                       +|+||++|.++..--..........+  +...+....    .. .+.....+..                 .+...+..
T Consensus        87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~--~~~~~~~~~----~l-~~~~~~~~~~-----------------qia~gl~~  142 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKSRVLETDPA--FAIANSTAS----TL-SSQQLLHFAA-----------------DVARGMDY  142 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHH--HHHHTTBSC----SS-CHHHHHHHHH-----------------HHHHHHHH
T ss_pred             EEEEEecCCCcHHHHHhhccccccchh--hhccccccC----CC-CHHHHHHHHH-----------------HHHHHHHh
Confidence             88999998776531100100000000  000000000    00 0111111211                 12222333


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      +.+        ..++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       143 lH~--------~~iiHrDlkp~NIL~~~~-~~~kl~DfG~a~  175 (309)
T d1fvra_         143 LSQ--------KQFIHRDLAARNILVGEN-YVAKIADFGLSR  175 (309)
T ss_dssp             HHH--------TTEECSCCSGGGEEECGG-GCEEECCTTCEE
T ss_pred             hhc--------CCccccccccceEEEcCC-CceEEccccccc
Confidence            322        238999999999999874 688999999873

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00027  Score=59.07  Aligned_cols=138  Identities=15%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             EecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCc-cc-ccChHHHHHHHHHHHhCCCCceEEEEE--CCe---eEEEee
Q 024452           42 PLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGV-EV-FFNRDDEIRTFECMSSQGQGPRLLGRF--GDG---RVEEFI  114 (267)
Q Consensus        42 ~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~-~~-~~dr~~E~~~~~~l~~~gl~P~v~~~~--~~~---~v~e~i  114 (267)
                      .|..|.-..||++......+ ....+.+|...... .. ...-.+|+.+++.+..-.+ .++++..  .++   +|+||.
T Consensus        34 ~iG~G~fg~Vyk~~~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-v~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          34 VIGRGHFGCVYHGTLLDNDG-KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV-LSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEETTEEEEEEEECC-----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTB-CCCCEEEEETTTEEEEEEECC
T ss_pred             EEeecCCeEEEEEEEECCCC-EEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCE-eEEeEEEEecCCceEEEEEEe
Confidence            46778889999998653210 11235567654322 11 1112478888877753222 3444442  333   789999


Q ss_pred             cCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHHHHHhCCC
Q 024452          115 HARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPN  194 (267)
Q Consensus       115 ~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  194 (267)
                      +|..+..           +      ++....    ... ......+..                 .+...+..+.+.   
T Consensus       112 ~~g~l~~-----------~------~~~~~~----~~~-~~~~~~i~~-----------------qia~gL~~lH~~---  149 (311)
T d1r0pa_         112 KHGDLRN-----------F------IRNETH----NPT-VKDLIGFGL-----------------QVAKGMKFLASK---  149 (311)
T ss_dssp             TTCBHHH-----------H------HHCTTC----CCB-HHHHHHHHH-----------------HHHHHHHHHHHT---
T ss_pred             ecCchhh-----------h------hccccc----cch-HHHHHHHHH-----------------HHHHhhhhhccc---
Confidence            9865431           1      111111    011 111111211                 122233333321   


Q ss_pred             CCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          195 DHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       195 ~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                           .++|+|++|.|||+++ ...+.|.||..+.
T Consensus       150 -----~iiHrDLK~~NILl~~-~~~~kL~DFG~~~  178 (311)
T d1r0pa_         150 -----KFVHRDLAARNCMLDE-KFTVKVADFGLAR  178 (311)
T ss_dssp             -----TCCCSCCSGGGEEECT-TCCEEECSSGGGC
T ss_pred             -----CcccCCccHHhEeECC-CCCEEEecccchh
Confidence                 2789999999999987 4689999998774

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00085  Score=55.72  Aligned_cols=154  Identities=15%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CcEE-EEEecCceeeeeEEEEeCCCC-CCCCceEEEEEcCCCccc-c-cChHHHHHHHHHHHhCCCCceEEEEEC--C--
Q 024452           36 DALQ-VIPLKGAMTNEVYQIAWPAKN-NGLARNVLVRIYGEGVEV-F-FNRDDEIRTFECMSSQGQGPRLLGRFG--D--  107 (267)
Q Consensus        36 ~~~~-i~~l~~G~~N~vy~v~~~~~~-~~~~~~~vlRi~~~~~~~-~-~dr~~E~~~~~~l~~~gl~P~v~~~~~--~--  107 (267)
                      +.++ ...|..|--..||++...... ...+..+.+|........ . ..-.+|+.+++.+....+ .+.++.+.  +  
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nI-v~~~~~~~~~~~~   98 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV-VRLLGVVSQGQPT   98 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTB-CCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCE-eeeeeEEecCCce
Confidence            4555 455777777899998753110 002357788876543211 0 011356666666543333 34555543  2  


Q ss_pred             eeEEEeecCCCCCcccCCChHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHhhccCcccccccchhhHHHHHHH
Q 024452          108 GRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFCLYTLKDEISM  187 (267)
Q Consensus       108 ~~v~e~i~G~~l~~~~l~~~~i~~~la~~La~lH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (267)
                      .+|++|++|..+..       ....-...+.   ....  .. ......+..+..                 .+...+..
T Consensus        99 ~lv~e~~~~g~l~~-------~~~~~~~~~~---~~~~--~~-~~~~~~~~~i~~-----------------~ia~gl~~  148 (308)
T d1p4oa_          99 LVIMELMTRGDLKS-------YLRSLRPAMA---NNPV--LA-PPSLSKMIQMAG-----------------EIADGMAY  148 (308)
T ss_dssp             EEEEECCTTCBHHH-------HHHHHHHHHH---HCTT--CC-CCCHHHHHHHHH-----------------HHHHHHHH
T ss_pred             eEEEeecCCCCHHH-------HHHhcccccc---cccc--cC-CCCHHHHHHHHH-----------------HHHHHHHH
Confidence            28899999866532       1111000000   0000  00 001111111211                 12223344


Q ss_pred             HHHhCCCCCCcEEEEccCCCCCCeeeeCCCCCEEEEeecccC
Q 024452          188 LEKELPNDHQEIGFCHNDLQYGNIMIDEETSSITIIVSFTFL  229 (267)
Q Consensus       188 l~~~l~~~~~~~~l~H~Dl~~~Nilv~~~~~~v~lIDwE~a~  229 (267)
                      |.+.        .++|+|++|.|||++.+ +.+.|.||..|.
T Consensus       149 LH~~--------~ivHrDlk~~NiLld~~-~~~Kl~DFGla~  181 (308)
T d1p4oa_         149 LNAN--------KFVHRDLAARNCMVAED-FTVKIGDFGMTR  181 (308)
T ss_dssp             HHHT--------TCBCSCCSGGGEEECTT-CCEEECCTTCCC
T ss_pred             HhhC--------CeeeceEcCCceeecCC-ceEEEeecccce
Confidence            4321        37999999999999974 689999999875

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00074  Score=57.00  Aligned_cols=52  Identities=15%  Similarity=0.058  Sum_probs=36.2

Q ss_pred             EEEecCceeeeeEEEEeCCCCCCCCceEEEEEcCCCcccccChHHHHHHHHHHHhC
Q 024452           40 VIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQ   95 (267)
Q Consensus        40 i~~l~~G~~N~vy~v~~~~~~~~~~~~~vlRi~~~~~~~~~dr~~E~~~~~~l~~~   95 (267)
                      +..|..|..+.||++....    ++..|.+|+........-...+|+.+++.+...
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~----~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~   69 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMV----NNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDA   69 (362)
T ss_dssp             EEEEEECSSEEEEEEEETT----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeCCCeEEEEEEECC----CCCEEEEEEEeccccchHHHHHHHHHHHHhcch
Confidence            7778888889999997543    357889998765421111124788999888764