Citrus Sinensis ID: 024455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcEEEEcccccccEEEEEEEEcccccEEEEEcccccccEEEcccccccccHHHHcccccHHHHHHHHHHHHccccccccccccccccEEEEEEcHHHHHHHHccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHcHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccccHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcEEccccccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccHHHHcccccHHHHHHHHHHHHHcccccEEEEccccccEEEEEccHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdteaelpkrstarhkcVACYKQFKRKDHLIEHMKIsyhsvhqpkcaVCQKLSKSFESLREhltgplskahcsgifsdrgcnlcmnifdspsslikhkeacslsapvpfektlsNAESQKKISGaidekrtcrgpkavamdcemvgggsngtlDLCARVclvdedenvifhtyvqpqlpvtnyryevtglteediknamplkEVKDKILEILNNGESTGRLMLDDGKARLLVGHGlehdldslrmnypdhmlrdtakyrplmktnlv
Flexible Loop (DISEMBL)
mdteaelpkrstarhkcvacYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPvpfektlsnaesqkkisgaidekrtcrgPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIfhtyvqpqlpvtnYRYEVTGLteediknamplkeVKDKILEILNNGESTGRLMLDDGKARLLVGHGLehdldslrmnypdhmlrdtakyrplmktnlv
Low Complexity Region (SEG)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV
Disordered region (IsUnstruct)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK***************************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY********************
Disordered Region (DISOPRED)
*****************VACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL*********************CNLCMNIFDSPSSLIK**EA***********************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTN**
Disordered Region (DISEMBL)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV
Disordered Region (DISPRO)
*************RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI*************************************RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q6PAQ4	432	RNA exonuclease 4 OS=Mus	yes	no	0.483	0.298	0.354	1e-19
Q9GZR2	422	RNA exonuclease 4 OS=Homo	yes	no	0.419	0.265	0.373	2e-19
Q91560	421	RNA exonuclease 4 OS=Xeno	N/A	no	0.419	0.266	0.380	7e-19
Q08237	289	RNA exonuclease 4 OS=Sacc	yes	no	0.426	0.394	0.359	1e-18
Q6DEW6	414	RNA exonuclease 4 OS=Xeno	no	no	0.419	0.270	0.380	2e-18
P0CQ44	408	RNA exonuclease 4 OS=Cryp	yes	no	0.419	0.274	0.357	2e-18
P0CQ45	408	RNA exonuclease 4 OS=Cryp	N/A	no	0.419	0.274	0.357	2e-18
Q6BIK6	272	RNA exonuclease 4 OS=Deba	yes	no	0.419	0.411	0.341	8e-18
Q4IEV5	319	RNA exonuclease 4 OS=Gibb	yes	no	0.426	0.357	0.367	1e-17
Q6FQA0	263	RNA exonuclease 4 OS=Cand	yes	no	0.419	0.425	0.357	1e-17

>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 15/144 (10%)

Query: 119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
           QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct: 234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query: 178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
            PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct: 294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query: 238 HDLDSLRMNYPDHMLRDTAKYRPL 261
           +DL  L +++P   +RDT K++P 
Sbjct: 340 NDLKVLFLDHPKKKIRDTQKFKPF 363

May function as an exonuclease.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 14/126 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           +A+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           K    L+ V+ ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347

Query: 256 AKYRPL 261
            KY+P 
Sbjct: 348 QKYKPF 353

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 14/126 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           K   P K V+ ++ EIL              + R LVGH + +DL  L +++P   +RDT
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 338

Query: 256 AKYRPL 261
            KY+P 
Sbjct: 339 QKYKPF 344

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 14/128 (10%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     AR+ +V+   +V+   +V+P+  V  +R  V+G+  E +
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHM 179

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           KNA+  KE + K  +IL              + R+LVGH L+HDL++L +++P  +LRDT
Sbjct: 180 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDT 225

Query: 256 AKYRPLMK 263
           +++ P  K
Sbjct: 226 SRHLPFRK 233

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 14/126 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  +DI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDI 286

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           KN    K+V+ ++ EIL              + R LVGH + +DL  L +++P   +RDT
Sbjct: 287 KNGEAFKDVQAEVAEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 332

Query: 256 AKYRPL 261
            KY+P 
Sbjct: 333 QKYKPF 338

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 14/126 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           +A+DCEMVG G NG  +  ARV +V+    VI  T+VQP+ PVT+YR  ++G+ + D+  
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A    EV  ++  +L++              ++L+GH +++DL  L + +P  + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238

Query: 258 YRPLMK 263
           Y+PL +
Sbjct: 239 YKPLQE 244

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=REX4 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 14/126 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           +A+DCEMVG G NG  +  ARV +V+    VI  T+VQP+ PVT+YR  ++G+ + D+  
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A    EV  ++  +L++              ++L+GH +++DL  L + +P  + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238

Query: 258 YRPLMK 263
           Y+PL +
Sbjct: 239 YKPLQE 244

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 14/126 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  GT    ARV +V+   + +F  +V+P+  VT++R  V+G+T + +
Sbjct: 98  KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM 157

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             A+  +E +++  ++L              + R+LVGH + HDLD+L +++P   +RDT
Sbjct: 158 NEAISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDT 203

Query: 256 AKYRPL 261
           ++Y+P 
Sbjct: 204 SQYKPF 209

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 14/128 (10%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +A+DCEMVG G  G     ARV +VD     I+ +YV+P+  VTN+R  V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           + A   +EV+ +I ++L              + R+LVGH L+HDL++L +++P   +RDT
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDT 237

Query: 256 AKYRPLMK 263
           AK+    K
Sbjct: 238 AKFSGFKK 245

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 14/126 (11%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     ARV LV+   NV+   +V+P+  VT++R  V+G+T + +
Sbjct: 94  KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           KNA+  K+ + ++ +IL              K ++LVGH ++HDL++L +++P   + DT
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDT 199

Query: 256 AKYRPL 261
           A++ P 
Sbjct: 200 ARHLPF 205

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
359807091	366	uncharacterized protein LOC100788682 [Gl	1.0	0.729	0.684	1e-105
356556710	366	PREDICTED: RNA exonuclease 4-like [Glyci	1.0	0.729	0.684	1e-104
296086710	341	unnamed protein product [Vitis vinifera]	1.0	0.782	0.645	1e-101
255567670	365	exonuclease, putative [Ricinus communis]	1.0	0.731	0.650	1e-99
224068807	349	predicted protein [Populus trichocarpa]	0.977	0.747	0.660	2e-99
357454687	366	RNA exonuclease [Medicago truncatula] gi	1.0	0.729	0.641	2e-98
388501576	366	unknown [Medicago truncatula]	1.0	0.729	0.641	2e-98
255635227	241	unknown [Glycine max]	0.895	0.991	0.655	6e-88
449449811	350	PREDICTED: RNA exonuclease 4-like [Cucum	0.936	0.714	0.573	3e-84
79422951	357	exonuclease-like protein [Arabidopsis th	0.985	0.736	0.547	2e-79

>gi|359807091|ref|NP_001241345.1| uncharacterized protein LOC100788682 [Glycine max] gi|255641871|gb|ACU21204.1| unknown [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 217/269 (80%), Gaps = 2/269 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H+E C LSAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                + DE     GP  AVA+DCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE +KNA+PLK+V++K+L+IL NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           DLD L+MNYPDHMLRDTAKYRPLMKTNLV
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556710|ref|XP_003546666.1| PREDICTED: RNA exonuclease 4-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 217/269 (80%), Gaps = 2/269 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                  DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           DLD L+MNYPDHMLRDTAKYRPLMKTNLV
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086710|emb|CBI32345.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 216/268 (80%), Gaps = 1/268 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           M +EA   +  T R+KC+AC++Q+K+K+HL+EHM++SYHSVHQPKC VCQK  KSF+SLR
Sbjct: 1   MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT-LSNAESQ 119
           EHLTG L K +C  IFS++GCN C+ IF +  SL +HKE C L  PV  EK  + + ESQ
Sbjct: 61  EHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQ 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              S +I+   T RG +A+A+DCE VGGGS+G+LDLCARVCL+DEDEN+IFHTYVQPQ+P
Sbjct: 121 IDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRYE+TG+TE  +++AMPLKEV++K++E+L NGES GRL LD GK RLLVGH L HD
Sbjct: 181 VTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           LD LRM+YPDH+LRDTAKY PLMKTNLV
Sbjct: 241 LDCLRMHYPDHLLRDTAKYLPLMKTNLV 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis] gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/272 (65%), Positives = 216/272 (79%), Gaps = 5/272 (1%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           M ++ ++P ++ T R+KC ACYKQ+K+K+HL+EHM ISYHSVHQP+CAVCQK  KSFESL
Sbjct: 1   MASKPDIPTKTPTTRYKCCACYKQYKKKEHLVEHMIISYHSVHQPRCAVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT---LSNA 116
           R HL GPL+KA+CS +FS  GC+LC+ +FDSP+SLI+H+E C LS P  F K    +  +
Sbjct: 61  RAHLQGPLAKANCSRVFSHLGCDLCLKVFDSPNSLIRHREMCCLSTPSSFVKLQICMLGS 120

Query: 117 ESQKKISGAIDEKRTCRGP-KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
                  G I       G  KA+A+DCEMVGGGS+GTL+LCARVCLVDEDEN+IFH YVQ
Sbjct: 121 NDNYIGGGVIGSNDNIGGDVKAIAIDCEMVGGGSDGTLNLCARVCLVDEDENIIFHAYVQ 180

Query: 176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
           PQ+P+T+YRYEVTGLTEE +++AMPLKEV++KILEIL NGES G+  L  GKARLLVGH 
Sbjct: 181 PQIPITDYRYEVTGLTEEHLRDAMPLKEVQNKILEILYNGESVGKARLSGGKARLLVGHS 240

Query: 236 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           L+HDLD LRM YPDH+LRDTAKYRPLMKTNL 
Sbjct: 241 LDHDLDCLRMFYPDHLLRDTAKYRPLMKTNLF 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068807|ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|222844556|gb|EEE82103.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/268 (66%), Positives = 213/268 (79%), Gaps = 7/268 (2%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           MD EA+ P RS T RHKC ACYKQFK+K+HL+EHMKISYH+ HQPKC VCQK  KSFESL
Sbjct: 1   MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQ 119
           R HLTGPLS+A CS  FS +GC+LC+ ++DSPSSL KH+E C LSAP      +      
Sbjct: 61  RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLSAPASLGTKI------ 114

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              +G++D K T +G KA+A++C +VGGG++G+LDLCARVCLVDEDEN+IFHTYVQPQ  
Sbjct: 115 LPFAGSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQSA 174

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VT+YRYE+TGLTEE ++N+   KEV+D+ILEIL NGES  RLM D GKARLLVGH L+  
Sbjct: 175 VTDYRYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLKRG 234

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           LD LR+NYP H+LRDTAKYRPL+KTNLV
Sbjct: 235 LDCLRINYPGHLLRDTAKYRPLLKTNLV 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454687|ref|XP_003597624.1| RNA exonuclease [Medicago truncatula] gi|358344695|ref|XP_003636423.1| RNA exonuclease [Medicago truncatula] gi|217072104|gb|ACJ84412.1| unknown [Medicago truncatula] gi|355486672|gb|AES67875.1| RNA exonuclease [Medicago truncatula] gi|355502358|gb|AES83561.1| RNA exonuclease [Medicago truncatula] gi|388504350|gb|AFK40241.1| unknown [Medicago truncatula]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/268 (64%), Positives = 210/268 (78%), Gaps = 1/268 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           LD L M+YPDH++RDTAKYRPLMKTNLV
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLV 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501576|gb|AFK38854.1| unknown [Medicago truncatula]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/268 (64%), Positives = 210/268 (78%), Gaps = 1/268 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           LD L M+YPDH++RDTAKYRPLMKTNLV
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLV 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635227|gb|ACU17968.1| unknown [Glycine max]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 190/241 (78%), Gaps = 2/241 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                  DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 D 239
           D
Sbjct: 241 D 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449811|ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus] gi|449507969|ref|XP_004163181.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 198/267 (74%), Gaps = 17/267 (6%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD++ +  K  + RHKC ACYKQ+K+K+HLIEHM++SYHSVHQP+C VC K  KSFESLR
Sbjct: 1   MDSDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
           EHL              ++GC LC+ + D P SL  H++ C ++APV    +L   +   
Sbjct: 61  EHLM-------------EQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTD--- 104

Query: 121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
            +S   +E R+ RG  A+A+DC M GGGS+G LD+C  +CLVDEDE +IF+T+VQPQ+P+
Sbjct: 105 -LSDCYEEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPI 163

Query: 181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           TNYR+EVTGL EE ++ AMPLK V++K+L++L NGES GRL L+ GKA+LLVGH LEHDL
Sbjct: 164 TNYRHEVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDL 223

Query: 241 DSLRMNYPDHMLRDTAKYRPLMKTNLV 267
           D LR+NYPDHMLRDTA+Y PLMKTNLV
Sbjct: 224 DCLRLNYPDHMLRDTARYHPLMKTNLV 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79422951|ref|NP_189436.2| exonuclease-like protein [Arabidopsis thaliana] gi|193211503|gb|ACF16171.1| At3g27970 [Arabidopsis thaliana] gi|225898687|dbj|BAH30474.1| hypothetical protein [Arabidopsis thaliana] gi|332643867|gb|AEE77388.1| exonuclease-like protein [Arabidopsis thaliana]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/265 (54%), Positives = 186/265 (70%), Gaps = 2/265 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct: 1   MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
           EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C  S+ V    T   A    
Sbjct: 61  EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGL 119

Query: 121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
           +    ID   + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + V
Sbjct: 120 RDKAMIDYTSS-RSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAV 178

Query: 181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           T+YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDL
Sbjct: 179 TSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDL 238

Query: 241 DSLRMNYPDHMLRDTAKYRPLMKTN 265
           D L++ YP  M+RDTAKY PLMKT+
Sbjct: 239 DRLQLEYPSSMIRDTAKYPPLMKTS 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2086839	357	AT3G27970 [Arabidopsis thalian	0.985	0.736	0.547	1.9e-76
TAIR|locus:2066406	344	AT2G48100 [Arabidopsis thalian	0.940	0.729	0.540	4.5e-75
TAIR|locus:2170533	348	AT5G40310 [Arabidopsis thalian	0.943	0.724	0.527	2e-72
FB|FBgn0036405	290	CG6833 [Drosophila melanogaste	0.453	0.417	0.362	3.6e-18
ZFIN|ZDB-GENE-120215-216	418	si:ch73-209e20.4 "si:ch73-209e	0.415	0.265	0.408	3.6e-18
MGI|MGI:2684957	432	Rexo4 "REX4, RNA exonuclease 4	0.479	0.296	0.356	8.7e-18
UNIPROTKB|Q9GZR2	422	REXO4 "RNA exonuclease 4" [Hom	0.486	0.308	0.344	2.2e-17
UNIPROTKB|H9KZR7	379	H9KZR7 "Uncharacterized protei	0.501	0.353	0.348	3.2e-17
UNIPROTKB|F1NQP7	414	Gga.48606 "Uncharacterized pro	0.501	0.323	0.348	4.4e-17
UNIPROTKB|F1N5B5	402	REXO4 "Uncharacterized protein	0.479	0.318	0.356	6.7e-17

TAIR|locus:2086839 AT3G27970 [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 145/265 (54%), Positives = 186/265 (70%)

Query:     1 MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
             MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct:     1 MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query:    61 EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
             EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C  S+ V    T   A    
Sbjct:    61 EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGL 119

Query:   121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
             +    ID   + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + V
Sbjct:   120 RDKAMIDYTSS-RSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAV 178

Query:   181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
             T+YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDL
Sbjct:   179 TSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDL 238

Query:   241 DSLRMNYPDHMLRDTAKYRPLMKTN 265
             D L++ YP  M+RDTAKY PLMKT+
Sbjct:   239 DRLQLEYPSSMIRDTAKYPPLMKTS 263

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2066406 AT2G48100 [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 147/272 (54%), Positives = 191/272 (70%)

Query:     1 MDTEAELPKRS--TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFES 58
             MD++    KR   + RH+CVACYK F R++HL+EHMKISYHS+HQP+C VC K  KSFES
Sbjct:     1 MDSQLNPSKRRKISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFES 60

Query:    59 LREHLTGP--LSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNA 116
             +REHL  P  LSK +C  IF+ RGC LC+ IF+   +L +HK  C LS P P        
Sbjct:    61 VREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPL-----GT 115

Query:   117 ESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP 176
              +Q+  S ++   R     KA+A+DCEMVGGG++GT+D CA VCLVD+DENVIF T+VQP
Sbjct:   116 STQRNPSSSLAGSRL----KAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQP 171

Query:   177 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL-VGHG 235
              LPVT+YR+E+TGLT+ED+K+ MPL+ V++++   L  G++       DG  RLL VGH 
Sbjct:   172 LLPVTDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQN-------DGAGRLLLVGHD 224

Query:   236 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
             L HD+  L++ YP H+LRDTAKY PLMKTNLV
Sbjct:   225 LRHDMSCLKLEYPSHLLRDTAKYVPLMKTNLV 256

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

TAIR|locus:2170533 AT5G40310 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 134/254 (52%), Positives = 182/254 (71%)

Query:    12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
             T R+KC  CY+QF +K+HL+EHM+ISYHSVH+P C +C K  +SF+SLREHL GPL K  
Sbjct:     3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQE 62

Query:    72 CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRT 131
             C  IFS RGC  C+ I +SP++   H+E C LS  V     +  A    + +  ID   +
Sbjct:    63 CKNIFSIRGCRFCLTILESPNARRIHQERCQLSN-VTSGLMIRMAALGLRNNSTIDYTSS 121

Query:   132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 191
              R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE ENV+FHTYV+P +PVTNYRYE+TG+ 
Sbjct:   122 -RSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIR 180

Query:   192 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
              E++++AM LK  + K+ E L NGE   ++   +GKAR+LVGHGL++ LDSL++ Y   M
Sbjct:   181 PENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSM 240

Query:   252 LRDTAKYRPLMKTN 265
             +RDTA+Y PLMK++
Sbjct:   241 IRDTAEYPPLMKSS 254

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0036405 CG6833 [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 49/135 (36%), Positives = 79/135 (58%)

Query:   129 KRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT 188
             K+     + +AMDCEMVG G N   D+ ARV +V+   +V+   YV+P+  VT+YR  V+
Sbjct:   109 KKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVS 168

Query:   189 GLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
             G+  +DI N      V+++++++++               R+LVGHGL +DL  L + +P
Sbjct:   169 GIRPQDIANGEDFAAVQNEVMKLIHG--------------RILVGHGLRNDLAVLGIRHP 214

Query:   249 DHMLRDTAKYRPLMK 263
              H +RDT+ Y+PL K
Sbjct:   215 FHDIRDTSHYKPLCK 229

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120215-216 si:ch73-209e20.4 "si:ch73-209e20.4" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 51/125 (40%), Positives = 74/125 (59%)

Query:   136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
             +AVAMDCEMVG G  G   + ARV LV+     I+  YV+P   VT+YR  V+G+  +DI
Sbjct:   232 RAVAMDCEMVGVGYKGEDSILARVSLVNHFGKCIYDKYVKPTEKVTDYRTAVSGIRPDDI 291

Query:   196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             KN   +K V+ ++ +IL              K R+LVGH + +DL  L +++P  M+RDT
Sbjct:   292 KNGEDIKTVQKEVAQIL--------------KGRILVGHAIHNDLKILLLDHPKKMIRDT 337

Query:   256 AKYRP 260
              +Y+P
Sbjct:   338 QRYKP 342

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

MGI|MGI:2684957 Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 8.7e-18, P = 8.7e-18
 Identities = 51/143 (35%), Positives = 84/143 (58%)

Query:   119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
             QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct:   234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query:   178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
              PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct:   294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query:   238 HDLDSLRMNYPDHMLRDTAKYRP 260
             +DL  L +++P   +RDT K++P
Sbjct:   340 NDLKVLFLDHPKKKIRDTQKFKP 362

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9GZR2 REXO4 "RNA exonuclease 4" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 50/145 (34%), Positives = 85/145 (58%)

Query:   117 ESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
             +S+  +S ++ +++   G  +A+A+DCEMVG G  G   + ARV +V++    ++  YV+
Sbjct:   222 QSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVK 281

Query:   176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
             P  PVT+YR  V+G+  E++K    L+ V+ ++ E+L              K R+LVGH 
Sbjct:   282 PTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML--------------KGRILVGHA 327

Query:   236 LEHDLDSLRMNYPDHMLRDTAKYRP 260
             L +DL  L +++P   +RDT KY+P
Sbjct:   328 LHNDLKVLFLDHPKKKIRDTQKYKP 352

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|H9KZR7 H9KZR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:   113 LSNAESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFH 171
             L   +S++ +   + ++++  G  +AVAMDCEMVG G +G   + ARV +V+     I+ 
Sbjct:   180 LEAGQSKQSVEQVLVKEKSSGGLTRAVAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYD 239

Query:   172 TYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL 231
              YV+P   VT+YR  V+G+  E +K     K V+ ++ +ILN               R+L
Sbjct:   240 KYVKPTEEVTDYRTAVSGIRPEHLKTGEDFKTVQKEVADILNG--------------RIL 285

Query:   232 VGHGLEHDLDSLRMNYPDHMLRDTAKYRP 260
             VGH L +DL  L +++P   +RDT KY+P
Sbjct:   286 VGHALHNDLKVLFLDHPKKKIRDTQKYKP 314

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NQP7 Gga.48606 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:   113 LSNAESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFH 171
             L   +S++ +   + ++++  G  +AVAMDCEMVG G +G   + ARV +V+     I+ 
Sbjct:   215 LEAGQSKQSVEQVLVKEKSSGGLTRAVAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYD 274

Query:   172 TYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL 231
              YV+P   VT+YR  V+G+  E +K     K V+ ++ +ILN               R+L
Sbjct:   275 KYVKPTEEVTDYRTAVSGIRPEHLKTGEDFKTVQKEVADILNG--------------RIL 320

Query:   232 VGHGLEHDLDSLRMNYPDHMLRDTAKYRP 260
             VGH L +DL  L +++P   +RDT KY+P
Sbjct:   321 VGHALHNDLKVLFLDHPKKKIRDTQKYKP 349

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1N5B5 REXO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 51/143 (35%), Positives = 79/143 (55%)

Query:   119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
             Q + S  + ++R   G  KA+AMDCEMVG G  G   + ARV LV++    ++  +V+P 
Sbjct:   206 QSESSSTLVKERPFGGLTKALAMDCEMVGVGPEGEESVVARVSLVNQHGRCVYDKHVKPT 265

Query:   178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
              PVT+YR  V+G+   D+      + V+ ++ E+L              K R+LVGH L 
Sbjct:   266 QPVTDYRTAVSGVRPADLAQGEEFEVVQREVAELL--------------KGRILVGHALH 311

Query:   238 HDLDSLRMNYPDHMLRDTAKYRP 260
             +DL +L + +P   +RDT KY+P
Sbjct:   312 NDLKALFLGHPKKKIRDTQKYKP 334

GO:0005730 "nucleolus" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00001978 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
cd06144	152	cd06144, REX4_like, DEDDh 3'-5' exonuclease domain	2e-58
cd06149	157	cd06149, ISG20, DEDDh 3'-5' exonuclease domain of	7e-26
smart00479	169	smart00479, EXOIII, exonuclease domain in DNA-poly	8e-22
cd06145	150	cd06145, REX1_like, DEDDh 3'-5' exonuclease domain	2e-21
cd06137	161	cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma	6e-16
pfam00929	161	pfam00929, RNase_T, Exonuclease	1e-15
cd06127	159	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam	4e-09
TIGR01405	1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	3e-07
cd06133	176	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonucleas	2e-06
COG2176	1444	COG2176, PolC, DNA polymerase III, alpha subunit (	3e-06
PRK07740	244	PRK07740, PRK07740, hypothetical protein; Provisio	8e-05
PRK00448	1437	PRK00448, polC, DNA polymerase III PolC; Validated	1e-04
COG0847	243	COG0847, DnaQ, DNA polymerase III, epsilon subunit	7e-04
cd06131	167	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-	0.001
TIGR01406	225	TIGR01406, dnaQ_proteo, DNA polymerase III, epsilo	0.002
PRK08074	928	PRK08074, PRK08074, bifunctional ATP-dependent DNA	0.003

>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  183 bits (466), Expect = 2e-58
 Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 14/129 (10%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G +G+    ARV +V+ED NV++ TYV+PQ PVT+YR  V+G+  E +K+
Sbjct: 1   VALDCEMVGVGPDGSESALARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKD 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A   +EV+ K+ E+L                R+LVGH L++DL  L++++P  ++RDT+K
Sbjct: 61  APDFEEVQKKVAELLKG--------------RILVGHALKNDLKVLKLDHPKKLIRDTSK 106

Query: 258 YRPLMKTNL 266
           Y+PL KT  
Sbjct: 107 YKPLRKTAK 115

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherchia coli RNase T. Length = 152

>gnl|CDD|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score = 99.0 bits (247), Expect = 7e-26
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 14/124 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G  G     AR  +V+   +V++  Y++P+ PVT+YR   +G+  + + N
Sbjct: 1   VAIDCEMVGTGPGGRESELARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVN 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A P    + +IL+IL              K +++VGH + +D  +L+  +P HM RDT+ 
Sbjct: 61  ATPFAVAQKEILKIL--------------KGKVVVGHAIHNDFKALKYFHPKHMTRDTST 106

Query: 258 YRPL 261
              L
Sbjct: 107 IPLL 110

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and replication. It may carry out its function by degrading viral RNAs as part of the IFN-regulated antiviral response. Length = 157

>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

 Score = 88.9 bits (221), Expect = 8e-22
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 26/140 (18%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDED---ENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
           V +DCE  G       D    +  VD D      +F TYV+P  P+T+Y  E+ G+T E 
Sbjct: 3   VVIDCETTGLDPGK--DEIIEIAAVDVDGGEIIEVFDTYVKPDRPITDYATEIHGITPEM 60

Query: 195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------ 248
           + +A   +EV +++LE L                 L+ G+    DL  L++ +P      
Sbjct: 61  LDDAPTFEEVLEELLEFLRGRI-------------LVAGNSAHFDLRFLKLEHPRLGIKQ 107

Query: 249 --DHMLRDTAKYRPLMKTNL 266
                + DT K        L
Sbjct: 108 PPKLPVIDTLKLARATNPGL 127

Length = 169

>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 21/114 (18%)

Query: 138 VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
            A+DCEM     G    L+L  RV +VDE+  V+    V+P   + +Y    +G+TEE +
Sbjct: 1   FALDCEMCYTTDG----LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEML 55

Query: 196 KNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
           +N    L++V+ K+L +++                +LVGH LE+DL +L++ +P
Sbjct: 56  ENVTTTLEDVQKKLLSLISPDT-------------ILVGHSLENDLKALKLIHP 96

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150

>gnl|CDD|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

 Score = 72.7 bits (179), Expect = 6e-16
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIK 196
           VA+DCEMVG           R+  VD     V+  + V+P + VT++R   +G+T  D++
Sbjct: 1   VALDCEMVG--LADGDSEVVRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLE 58

Query: 197 NAMPLKEVKDKILEILNNGESTGRLMLDD--GKARLLVGHGLEHDLDSLRM 245
            A    +    I      G    R  L        +LVGH L++DLD+LRM
Sbjct: 59  EA---AKAGKTI-----FGWEAARAALWKFIDPDTILVGHSLQNDLDALRM 101

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong preference for single-stranded RNA. Length = 161

>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 13/137 (9%)

Query: 138 VAMDCEMVGGGSNGT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           V +DCE  G        +++ A   +  E+   +F TYV+P+  +T+   E  G+T E +
Sbjct: 1   VVIDCETTGLDPEKDEIIEIAAVSIVGGENIGPVFDTYVKPERLITDEATEFHGITPEML 60

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------D 249
           +NA   +EV +  LE L         +L    A   VG  L  DL  L++  P      D
Sbjct: 61  RNAPSFEEVLEAFLEFLK-----KLKILVGHNASFDVGFLLYDDLRFLKLPMPKLNDVID 115

Query: 250 HMLRDTAKYRPLMKTNL 266
            ++ D A Y+   + +L
Sbjct: 116 TLILDKATYKGFKRRSL 132

This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;. Length = 161

>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVC-----LVDEDENVI--FHTYVQPQLPVTNYRYEVTGL 190
           V  D E  G           R+       VD    ++  F T V P  P+      + G+
Sbjct: 1   VVFDTETTGLDPKK-----DRIIEIGAVKVDGGIEIVERFETLVNPGRPIPPEATAIHGI 55

Query: 191 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           T+E + +A P +EV  + LE L                R+LV H    DL
Sbjct: 56  TDEMLADAPPFEEVLPEFLEFL--------------GGRVLVAHNASFDL 91

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others. Length = 159

>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++ +  E+TG+T++ ++NA  ++EV +K  E                K  
Sbjct: 226 FQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFF--------------KDS 271

Query: 230 LLVGHGLEHDLDSLRMNYPDHML 252
           +LV H    D+  L  N+    L
Sbjct: 272 ILVAHNASFDIGFLNTNFEKVGL 294

This model describes a polypeptide chain of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model [DNA metabolism, DNA replication, recombination, and repair]. Length = 1213

>gnl|CDD|99836 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
             LVD     I   F +YV+P +   ++++  E+TG+T+ED+ NA    EV  + LE L 
Sbjct: 28  AVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLKEFLEWLG 87

Query: 214 N 214
            
Sbjct: 88  K 88

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo. Length = 176

>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++    E+TG+T+E ++NA  ++EV +K  E +                 
Sbjct: 457 FQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFREFI--------------GDS 502

Query: 230 LLVGHGLEHDLDSLRMNYPDHMLRD 254
           +LV H    D+  L  NY  + L  
Sbjct: 503 ILVAHNASFDMGFLNTNYEKYGLEP 527

Length = 1444

>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 164 EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLML 223
           E E   F++ V+P+ P+  +  E+TG+T ED+  A PL EV  +    +           
Sbjct: 91  EVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHRFYAFIG---------- 140

Query: 224 DDGKARLLVGHGLEHDLDSLR 244
               A +LV H   HD   LR
Sbjct: 141 ----AGVLVAHHAGHDKAFLR 157

Length = 244

>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           ++  +I  F  +++P  P++ +  E+TG+T++ +K+A  ++EV  K  E   +       
Sbjct: 447 KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFCGD------- 499

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNYPDH 250
                   +LV H    D+  +  NY   
Sbjct: 500 -------SILVAHNASFDVGFINTNYEKL 521

Length = 1437

>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 163 DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLM 222
                  FHT V P+ P+    +++ G+T+E + +A    EV  + L+ +          
Sbjct: 43  GRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFIGGL------- 95

Query: 223 LDDGKARLLVGHGLEHDLDSLRM 245
                 RLLV H    D+  LR+
Sbjct: 96  ------RLLVAHNAAFDVGFLRV 112

Length = 243

>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH Y+ P+  +    ++V G+T+E + +     E+ D+ L+ +   E
Sbjct: 37  FHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFIRGAE 83

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex. Length = 167

>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH YV P+  +     +V G+T+E + +    KE+ D+ L+ +   E
Sbjct: 38  FHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFIGGSE 84

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in Pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 225

>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 159 VCLVDEDENV-IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG 215
             +V++ E +  F ++V P+ P+  +  E+TG++EE +K A   ++V  +I+E+L   
Sbjct: 28  AVVVEDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIVELLEGA 85

Length = 928

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG2249	280	consensus 3'-5' exonuclease [Replication, recombin	100.0
cd06143	174	PAN2_exo DEDDh 3'-5' exonuclease domain of the euk	99.94
cd06149	157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	99.92
cd06145	150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	99.91
cd06144	152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	99.9
KOG2248	380	consensus 3'-5' exonuclease [Replication, recombin	99.87
cd06137	161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	99.86
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.86
PRK07247	195	DNA polymerase III subunit epsilon; Validated	99.75
TIGR01406	225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	99.74
PRK05711	240	DNA polymerase III subunit epsilon; Provisional	99.73
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.73
PRK05601	377	DNA polymerase III subunit epsilon; Validated	99.71
cd06130	156	DNA_pol_III_epsilon_like an uncharacterized bacter	99.71
PRK09146	239	DNA polymerase III subunit epsilon; Validated	99.71
PRK06310	250	DNA polymerase III subunit epsilon; Validated	99.71
PRK07740	244	hypothetical protein; Provisional	99.68
TIGR00573	217	dnaq exonuclease, DNA polymerase III, epsilon subu	99.68
PRK06807	313	DNA polymerase III subunit epsilon; Validated	99.68
cd06131	167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	99.67
COG2176	1444	PolC DNA polymerase III, alpha subunit (gram-posit	99.66
PRK06195	309	DNA polymerase III subunit epsilon; Validated	99.66
PRK07983	219	exodeoxyribonuclease X; Provisional	99.66
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.65
PRK07246	820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.65
PRK09145	202	DNA polymerase III subunit epsilon; Validated	99.63
PRK06309	232	DNA polymerase III subunit epsilon; Validated	99.63
PRK08517	257	DNA polymerase III subunit epsilon; Provisional	99.63
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	99.61
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.61
smart00479	169	EXOIII exonuclease domain in DNA-polymerase alpha	99.61
PRK07883	557	hypothetical protein; Validated	99.6
PRK07942	232	DNA polymerase III subunit epsilon; Provisional	99.6
PRK08074	928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.59
PRK06722	281	exonuclease; Provisional	99.59
cd06136	177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	99.59
PRK05168	211	ribonuclease T; Provisional	99.55
PRK07748	207	sporulation inhibitor KapD; Provisional	99.55
cd06134	189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	99.54
TIGR01407	850	dinG_rel DnaQ family exonuclease/DinG family helic	99.54
TIGR01298	200	RNaseT ribonuclease T. in gamma-subdivision Proteo	99.54
TIGR01405	1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.53
COG0847	243	DnaQ DNA polymerase III, epsilon subunit and relat	99.53
PRK05359	181	oligoribonuclease; Provisional	99.51
cd06127	159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	99.51
KOG3608	467	consensus Zn finger proteins [General function pre	99.48
cd06138	183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.47
PF00929	164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	99.46
cd06135	173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	99.4
PRK09182	294	DNA polymerase III subunit epsilon; Validated	99.38
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.38
KOG3576	267	consensus Ovo and related transcription factors [T	99.34
cd06133	176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	99.33
PRK00448	1437	polC DNA polymerase III PolC; Validated	99.28
PTZ00315	582	2'-phosphotransferase; Provisional	99.27
KOG3608	467	consensus Zn finger proteins [General function pre	99.23
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.2
PRK11779	476	sbcB exonuclease I; Provisional	99.18
KOG3576	267	consensus Ovo and related transcription factors [T	99.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.13
PHA02768	55	hypothetical protein; Provisional	98.93
KOG3242	208	consensus Oligoribonuclease (3'->5' exoribonucleas	98.85
PHA00733	128	hypothetical protein	98.84
PHA02768	55	hypothetical protein; Provisional	98.7
PHA00733	128	hypothetical protein	98.54
PLN03086	567	PRLI-interacting factor K; Provisional	98.46
COG1949	184	Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA	98.3
PHA00616	44	hypothetical protein	98.26
PHA00616	44	hypothetical protein	98.23
PHA00732	79	hypothetical protein	98.21
KOG3993	500	consensus Transcription factor (contains Zn finger	98.21
KOG3993	500	consensus Transcription factor (contains Zn finger	98.2
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.2
PLN03086	567	PRLI-interacting factor K; Provisional	98.16
cd05160	199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	98.0
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.81
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.76
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.43
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.4
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.36
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.36
PHA00732	79	hypothetical protein	97.31
KOG0542	280	consensus Predicted exonuclease [Replication, reco	97.27
cd06125	96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	97.06
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.85
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.85
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.81
smart00355	26	ZnF_C2H2 zinc finger.	96.81
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.7
smart00355	26	ZnF_C2H2 zinc finger.	96.64
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.55
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.3
PF01612	176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	96.16
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.78
PRK04860	160	hypothetical protein; Provisional	95.67
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.38
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.21
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.98
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.92
cd05780	195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	94.75
COG2925	475	SbcB Exonuclease I [DNA replication, recombination	94.54
cd05785	207	DNA_polB_like2_exo Uncharacterized bacterial subgr	94.49
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	94.4
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.3
cd06146	193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	94.15
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.15
cd06139	193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	94.11
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	93.42
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.32
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.27
COG5018	210	KapD Inhibitor of the KinA pathway to sporulation,	93.12
cd05781	188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	93.01
COG5048	467	FOG: Zn-finger [General function prediction only]	92.76
cd05784	193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	92.47
PF03104	325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	92.2
KOG2893	341	consensus Zn finger protein [General function pred	92.09
PRK05755	880	DNA polymerase I; Provisional	90.71
cd06141	170	WRN_exo DEDDy 3'-5' exonuclease domain of WRN and	90.45
cd05779	204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	90.33
cd05783	204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	90.28
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	89.48
COG4049	65	Uncharacterized protein containing archaeal-type C	89.29
cd05777	230	DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain	89.02
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.97
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.44
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.32
cd05776	234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	87.91
PRK04860	160	hypothetical protein; Provisional	87.44
cd05778	231	DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease	86.78
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	86.07
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	85.91
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	85.25
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	85.19
PF13482	164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	83.19
cd06148	197	Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro	82.71
cd00007	155	35EXOc 3'-5' exonuclease. The 35EXOc domain is res	82.43
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	82.35
PTZ00166	1054	DNA polymerase delta catalytic subunit; Provisiona	82.05
PHA02528	881	43 DNA polymerase; Provisional	80.99

>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=100.00  E-value=3.7e-35  Score=235.07  Aligned_cols=218  Identities=42%  Similarity=0.743  Sum_probs=169.1

Q ss_pred             ccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHH
Q 024455           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (267)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~   95 (267)
                      .|..|.+.|.-...+-.|+ +..|....+.|..|.+.-.....+..++-.+.+- .|...|++..|..|.-.-.......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (280)
T KOG2249|consen    2 KASSCAQQFNKKEHLPNHK-VSRHKLHERKCGKCKKVARSFESNEEGLIAPLPK-EGKNIFSQRGNRFKATIKASPGKRR   79 (280)
T ss_pred             CccHHHHHhCccccCcccc-chhhccCcchhhhHHHhccCcccccccccCCCCc-ccCccccchhhHHHhhHhhcCCcch
Confidence            3667778888888887887 2115544448889988888888788887555554 7777888877776654433333333


Q ss_pred             HHHHHhcCCCCccccccCcchhhhhhhccccccccccCCCceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccC
Q 024455           96 KHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ  175 (267)
Q Consensus        96 ~H~~~h~~~~~~~C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~  175 (267)
                      .|+-.+.+.    |..+    ..+..      ..+.....+++++||||+|.+..++.+++||++|||..|+++||+||+
T Consensus        80 ~~~~~~~~~----~~~~----~~~~k------~s~~~~~~r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVk  145 (280)
T KOG2249|consen   80 IHQGSCQAS----CRMA----ALGSK------DSRMGSLTRVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVK  145 (280)
T ss_pred             hhhcccCCC----cccc----ccchh------hccccccceEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecC
Confidence            333222221    1100    00000      011222236899999999999999999999999999999999999999


Q ss_pred             CCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCCCCceecc
Q 024455          176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT  255 (267)
Q Consensus       176 P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt  255 (267)
                      |..+|+||+|+++||+++++.+|++|+.|+.+++++|              .|+|||||.+++||.+|.+.||+.+|+||
T Consensus       146 P~~~VtDyRT~vSGIrpehm~~A~pf~~aQ~ev~klL--------------~gRIlVGHaLhnDl~~L~l~hp~s~iRDT  211 (280)
T KOG2249|consen  146 PTEPVTDYRTRVSGIRPEHMRDAMPFKVAQKEVLKLL--------------KGRILVGHALHNDLQALKLEHPRSMIRDT  211 (280)
T ss_pred             CCcccccceeeecccCHHHhccCccHHHHHHHHHHHH--------------hCCEEeccccccHHHHHhhhCchhhhccc
Confidence            9999999999999999999999999999999999999              88999999999999999999999999999


Q ss_pred             cccccccc
Q 024455          256 AKYRPLMK  263 (267)
Q Consensus       256 ~~~~~~~~  263 (267)
                      |.++||.+
T Consensus       212 s~~~pl~k  219 (280)
T KOG2249|consen  212 SKYPPLMK  219 (280)
T ss_pred             ccCchHHH
Confidence            99999987

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

Probab=99.94  E-value=5.8e-27  Score=180.89  Aligned_cols=113  Identities=27%  Similarity=0.393  Sum_probs=100.1

Q ss_pred             eeeeccccCCcC-------CCCc-------cceeeEEEec----CCCCeeEecccCCCCCccccccccccCCHHhhccCC
Q 024455          138 VAMDCEMVGGGS-------NGTL-------DLCARVCLVD----EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM  199 (267)
Q Consensus       138 ~~~dcE~~g~~~-------~~~~-------~~i~~v~vvd----~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~  199 (267)
                      +++|||+.|.+.       .++.       .++|||++||    ..|.+++|.+|+|..+|.+|+|++||||+++|++++
T Consensus         1 ~a~d~e~v~~~~~~~~~~~~g~~~~~~~~~~~LaRVsiVd~~~~~~g~vllD~~VkP~~~V~DYrT~~SGIt~~~L~~a~   80 (174)
T cd06143           1 VAIDAEFVKLKPEETEIRSDGTKSTIRPSQMSLARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPKT   80 (174)
T ss_pred             CceeeeEEEecchhceecCCCcEeeeccCCceeEEEEEEcCCCCcCCCEEEeeeECCCCCccCcCccccccCHHHcCccc
Confidence            367888887764       3443       3689999999    689999999999999999999999999999999874


Q ss_pred             ------CHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCCCCceecccccccccc
Q 024455          200 ------PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK  263 (267)
Q Consensus       200 ------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~~~  263 (267)
                            ++++|.++|+++|.             .|+|||||++++||++|++.||+..+||||.||+++.
T Consensus        81 ~~~~~~t~~~v~~~l~~li~-------------~~tILVGHsL~nDL~aL~l~hp~~~viDTa~l~~~~~  137 (174)
T cd06143          81 SSKNLTTLKSAYLKLRLLVD-------------LGCIFVGHGLAKDFRVINIQVPKEQVIDTVELFHLPG  137 (174)
T ss_pred             cccccCCHHHHHHHHHHHcC-------------CCCEEEeccchhHHHHhcCcCCCcceEEcHHhccCCC
Confidence                  69999999999993             6899999999999999999999999999999987764

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=99.92  E-value=2.2e-25  Score=173.14  Aligned_cols=110  Identities=38%  Similarity=0.712  Sum_probs=101.8

Q ss_pred             eeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCCC
Q 024455          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGES  217 (267)
Q Consensus       138 ~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~~  217 (267)
                      +++||||+|.+..++..+++++.+++.++..+++++|+|..+|+++++++||||+++|+++|++++|+.+|++|+     
T Consensus         1 v~~D~EttGl~~~~~~~~i~~i~~v~~~g~~~~~~lv~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~l~~~l-----   75 (157)
T cd06149           1 VAIDCEMVGTGPGGRESELARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVNATPFAVAQKEILKIL-----   75 (157)
T ss_pred             CEEEeEeccccCCCCeEEEEEEEEEeCCCCEEEEEeECCCCccCccceECCCCCHHHHhcCCCHHHHHHHHHHHc-----
Confidence            479999999987666778899999998899999999999999999999999999999999999999999999999     


Q ss_pred             CCcccccCCCceEEEeccchhhhccccccCCCCceecccccccc
Q 024455          218 TGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL  261 (267)
Q Consensus       218 ~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~  261 (267)
                               +|+||||||+.||++||++.++...++||+.+..+
T Consensus        76 ---------~~~vlV~Hn~~~D~~~l~~~~~~~~~~Dt~~l~~~  110 (157)
T cd06149          76 ---------KGKVVVGHAIHNDFKALKYFHPKHMTRDTSTIPLL  110 (157)
T ss_pred             ---------CCCEEEEeCcHHHHHHhcccCCCcCEEECcccccc
Confidence                     78999999999999999999998889999876544

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

Probab=99.91  E-value=3.3e-24  Score=165.42  Aligned_cols=106  Identities=35%  Similarity=0.582  Sum_probs=95.9

Q ss_pred             eeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCC-CHHHHHHHHHHHHhcCC
Q 024455          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-PLKEVKDKILEILNNGE  216 (267)
Q Consensus       138 ~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~-~~~~v~~~~~~~~~~~~  216 (267)
                      +++||||+|.+.+   ++++++.+++.++..+|+++|+|..+|+++++++||||+++|+++| ++++|+.++++|++   
T Consensus         1 ~~iD~E~~g~~~g---~ei~~i~~v~~~~~~~f~~lv~P~~~i~~~~t~itGIt~~~l~~a~~~~~~v~~~~~~fl~---   74 (150)
T cd06145           1 FALDCEMCYTTDG---LELTRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVTTTLEDVQKKLLSLIS---   74 (150)
T ss_pred             CEEeeeeeeecCC---CEEEEEEEEeCCCCEEEEEeECCCCccchhccCcCCCCHHHhccCCCCHHHHHHHHHHHhC---
Confidence            4789999998653   6779999999999999999999999999999999999999999995 99999999999992   


Q ss_pred             CCCcccccCCCceEEEeccchhhhccccccCCCCceecccccccc
Q 024455          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL  261 (267)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~  261 (267)
                                .+.+|||||+.||+.||+..++  ++|||+.+++.
T Consensus        75 ----------~~~vlVgHn~~fD~~fL~~~~~--~~iDT~~l~r~  107 (150)
T cd06145          75 ----------PDTILVGHSLENDLKALKLIHP--RVIDTAILFPH  107 (150)
T ss_pred             ----------CCCEEEEcChHHHHHHhhccCC--CEEEcHHhccc
Confidence                      3789999999999999999887  68999987654

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=99.90  E-value=2.3e-23  Score=161.26  Aligned_cols=111  Identities=50%  Similarity=0.908  Sum_probs=101.9

Q ss_pred             eeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCCC
Q 024455          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGES  217 (267)
Q Consensus       138 ~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~~  217 (267)
                      +++||||+|.....+.++++.+.+++..+...++++|+|..+++++++.+||||+++++++|++++++.+|++|+     
T Consensus         1 v~lD~EttGl~~~~~~~~i~~v~~v~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~~~v~~a~~~~~~~~~l~~~l-----   75 (152)
T cd06144           1 VALDCEMVGVGPDGSESALARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVAELL-----   75 (152)
T ss_pred             CEEEEEeecccCCCCEEEEEEEEEEeCCCCEEEEEEECCCCCCCcccccCCCCCHHHHcCCCCHHHHHHHHHHHh-----
Confidence            478999999876556788899999998899899999999999999999999999999999999999999999999     


Q ss_pred             CCcccccCCCceEEEeccchhhhccccccCCCCceeccccccccc
Q 024455          218 TGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLM  262 (267)
Q Consensus       218 ~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~~  262 (267)
                               ++.+|||||+.||+.||++..|+..++||..+..++
T Consensus        76 ---------~~~vlVgHn~~fD~~~L~~~~~~~~~~dt~~l~~~~  111 (152)
T cd06144          76 ---------KGRILVGHALKNDLKVLKLDHPKKLIRDTSKYKPLR  111 (152)
T ss_pred             ---------CCCEEEEcCcHHHHHHhcCcCCCccEEEeEEeeccc
Confidence                     678999999999999999999998999998766554

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus

>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=99.87  E-value=2.2e-22  Score=173.78  Aligned_cols=116  Identities=38%  Similarity=0.649  Sum_probs=105.2

Q ss_pred             ccCCCceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccC-CCHHHHHHHHH
Q 024455          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKIL  209 (267)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~-~~~~~v~~~~~  209 (267)
                      .....+++++|||||....+   .+++||.+||.++.+++|.+|+|..+|.+|+++++|||.++++++ .++++|..+|.
T Consensus       212 v~~~~~i~AlDCEm~~te~g---~el~RVt~VD~~~~vi~D~fVkP~~~VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~  288 (380)
T KOG2248|consen  212 VSKSPNIFALDCEMVVTENG---LELTRVTAVDRDGKVILDTFVKPNKPVVDYNTRYSGITEEDLENSTITLEDVQKELL  288 (380)
T ss_pred             CCCCCCeEEEEeeeeeeccc---eeeEEeeeeeccCcEEeEEeecCCCcccccccccccccHHHHhcCccCHHHHHHHHH
Confidence            45567789999999998543   567999999999999999999999999999999999999999876 69999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccccCCCCceeccccccccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT  264 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~~~~  264 (267)
                      .+++             .++|||||++++||++|++.||  .+||||.+|++...
T Consensus       289 ~~~~-------------~~TILVGHSLenDL~aLKl~H~--~ViDTa~lf~~~~g  328 (380)
T KOG2248|consen  289 ELIS-------------KNTILVGHSLENDLKALKLDHP--SVIDTAVLFKHPTG  328 (380)
T ss_pred             hhcC-------------cCcEEEeechhhHHHHHhhhCC--ceeeeeEEEecCCC
Confidence            9994             8899999999999999999999  78999988877654

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

Probab=99.86  E-value=4.2e-22  Score=155.63  Aligned_cols=107  Identities=31%  Similarity=0.520  Sum_probs=89.4

Q ss_pred             eeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCC-------HHHHHHHHH
Q 024455          138 VAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP-------LKEVKDKIL  209 (267)
Q Consensus       138 ~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~-------~~~v~~~~~  209 (267)
                      +++||||+|.+. .+++.+++.|.+.  ++.++++.+|+|..+|+++++++||||+++|+++|+       +++++++|+
T Consensus         1 v~lD~EttGl~~~~d~ii~Ig~V~v~--~g~i~~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~~~~~~~~~~~~~~~   78 (161)
T cd06137           1 VALDCEMVGLADGDSEVVRISAVDVL--TGEVLIDSLVRPSVRVTDWRTRFSGVTPADLEEAAKAGKTIFGWEAARAALW   78 (161)
T ss_pred             CEEEeeeeeEcCCCCEEEEEEEEEcC--CCeEEEeccccCCCCCCccceeccCCCHHHHhhhhhcCCccccHHHHHHHHH
Confidence            479999999875 3344444555443  566779999999999999999999999999999875       459999999


Q ss_pred             HHHhcCCCCCcccccCCCc-eEEEeccchhhhccccccCCCCceeccccccccc
Q 024455          210 EILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLM  262 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~-~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~~  262 (267)
                      +|+              ++ .||||||+.||++||+..++  .+|||..+++..
T Consensus        79 ~~i--------------~~~~vlVgHn~~fD~~fL~~~~~--~~iDT~~l~~~~  116 (161)
T cd06137          79 KFI--------------DPDTILVGHSLQNDLDALRMIHT--RVVDTAILTREA  116 (161)
T ss_pred             Hhc--------------CCCcEEEeccHHHHHHHHhCcCC--CeeEehhhhhhc
Confidence            999              55 89999999999999999877  789999887643

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.86  E-value=1.9e-22  Score=163.01  Aligned_cols=115  Identities=25%  Similarity=0.390  Sum_probs=95.3

Q ss_pred             CCCCCCccccccCccccCChHHHHHHHhHhcCCC--CCC--CcccchhhcCCHHHHHhhc---CCCCCCCcCCcccccc-
Q 024455            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV--HQP--KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDR-   79 (267)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~--~~~--~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~-   79 (267)
                      ++...-.|+|+.|||.+.+.++|.+|+++  |-.  ++.  .|+.|||.|.+...|+.|+   +-++.|.+|||.|++. 
T Consensus       124 ~~~~~~r~~c~eCgk~ysT~snLsrHkQ~--H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPW  201 (279)
T KOG2462|consen  124 SAAKHPRYKCPECGKSYSTSSNLSRHKQT--HRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPW  201 (279)
T ss_pred             ccccCCceeccccccccccccccchhhcc--cccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchH
Confidence            34456679999999999999999999999  743  333  9999999999999999999   4477788888888864 


Q ss_pred             ---------------cccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcc
Q 024455           80 ---------------GCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISG  124 (267)
Q Consensus        80 ---------------~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~  124 (267)
                                     +|+.|+|.|..++||+.||++|.+.|+|+   |+++|+..+.|.+|.+
T Consensus       202 LLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  202 LLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             HhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence                           28888888888888888888888888886   7788888888888874

>PRK07247 DNA polymerase III subunit epsilon; Validated

Probab=99.75  E-value=2.3e-18  Score=137.90  Aligned_cols=97  Identities=24%  Similarity=0.298  Sum_probs=88.9

Q ss_pred             CceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhc
Q 024455          135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~  214 (267)
                      ..++++|+||+|.....++++|+.|.+.++.....++.+|+|..+++.+.+.+||||+++|+++|++.+|+++|.+|+  
T Consensus         5 ~~~vvlD~EtTGl~~~~eIIeIgaV~v~~g~~~~~f~~lv~P~~~i~~~~~~lhGIt~~~v~~ap~~~evl~~f~~f~--   82 (195)
T PRK07247          5 ETYIAFDLEFNTVNGVSHIIQVSAVKYDDHKEVDSFDSYVYTDVPLQSFINGLTGITADKIADAPKVEEVLAAFKEFV--   82 (195)
T ss_pred             CeEEEEEeeCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECCCCCCCccceecCCCCHHHHhCCCCHHHHHHHHHHHH--
Confidence            467999999999876678899999999877666789999999999999999999999999999999999999999999  


Q ss_pred             CCCCCcccccCCCceEEEeccch-hhhccccc
Q 024455          215 GESTGRLMLDDGKARLLVGHGLE-HDLDSLRM  245 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~-~Dl~~l~~  245 (267)
                                  ++.+|||||+. ||+.||+.
T Consensus        83 ------------~~~~lVaHNa~~fD~~fL~~  102 (195)
T PRK07247         83 ------------GELPLIGYNAQKSDLPILAE  102 (195)
T ss_pred             ------------CCCeEEEEeCcHhHHHHHHH
Confidence                        77899999997 89999964

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial

Probab=99.74  E-value=2.4e-18  Score=141.18  Aligned_cols=107  Identities=24%  Similarity=0.296  Sum_probs=92.1

Q ss_pred             eeeeeccccCCcCC--CCccceeeEEEecCCC-CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          137 AVAMDCEMVGGGSN--GTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       137 ~~~~dcE~~g~~~~--~~~~~i~~v~vvd~~~-~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ++++|+||+|....  .++++++.|.+.+... ...|+.+|+|..++++..+++||||+++|+++|+|++|+.+|.+|+ 
T Consensus         2 ~vvlD~ETTGl~p~~~d~IIEIgav~~~~~~~~~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~~f~~fi-   80 (225)
T TIGR01406         2 QIILDTETTGLDPKGGHRIVEIGAVELVNRMLTGDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFI-   80 (225)
T ss_pred             EEEEEeeCCCcCCCCCCeEEEEEEEEEECCcEecceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHHHHHHHh-
Confidence            58899999998754  5789999999887542 2479999999999999999999999999999999999999999999 


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhccccccC-------C----CCceecccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-------P----DHMLRDTAK  257 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~-------~----~~~~~dt~~  257 (267)
                                   ++.+|||||+.||+.||+...       +    ...++||..
T Consensus        81 -------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~  122 (225)
T TIGR01406        81 -------------GGSELVIHNAAFDVGFLNYELERLGPTIKKIGEFCRVIDTLA  122 (225)
T ss_pred             -------------CCCEEEEEecHHHHHHHHHHHHHhCCCCcccccCCCEEEHHH
Confidence                         778999999999999996421       2    147889864

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.

>PRK05711 DNA polymerase III subunit epsilon; Provisional

Probab=99.73  E-value=2.6e-18  Score=141.65  Aligned_cols=108  Identities=22%  Similarity=0.355  Sum_probs=93.1

Q ss_pred             ceeeeeccccCCcC--CCCccceeeEEEecCCC-CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          136 KAVAMDCEMVGGGS--NGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       136 ~~~~~dcE~~g~~~--~~~~~~i~~v~vvd~~~-~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      .++++|+|++|...  .+++++|+.|.+.+... ...|+.+|+|..+|++...++||||+++|+++|+|++|+++|++|+
T Consensus         5 r~vvlDtETTGldp~~~drIIEIGaV~v~~~~~~~~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~ev~~~f~~fi   84 (240)
T PRK05711          5 RQIVLDTETTGLNQREGHRIIEIGAVELINRRLTGRNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAEVADEFLDFI   84 (240)
T ss_pred             eEEEEEeeCCCcCCCCCCeEEEEEEEEEECCEEeccEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHHHHHHHHHHh
Confidence            57899999999875  46889999999987643 2468999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhcccccc-------CCC----Cceecccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPD----HMLRDTAK  257 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-------~~~----~~~~dt~~  257 (267)
                                    ++.+|||||+.||+.||+..       .|+    ..++||..
T Consensus        85 --------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~  126 (240)
T PRK05711         85 --------------RGAELIIHNAPFDIGFMDYEFALLGRDIPKTNTFCKVTDTLA  126 (240)
T ss_pred             --------------CCCEEEEEccHHhHHHHHHHHHHhCCCCCcccccCceeeHHH
Confidence                          77899999999999999643       231    35788863

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.73  E-value=7.6e-19  Score=142.23  Aligned_cols=99  Identities=18%  Similarity=0.322  Sum_probs=88.9

Q ss_pred             CcccchhhcCCHHHHHhhc--------CCCCCCCcCCccccccc--------------ccccccccCChhhHHHHHHHhc
Q 024455           45 KCAVCQKLSKSFESLREHL--------TGPLSKAHCSGIFSDRG--------------CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~--------~~~~~C~~C~k~f~~~~--------------C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      +|..||+.+++.++|.+|.        .+-+.|+.|+|.+.+..              |.+|||.|.+..-|+.|+|+|+
T Consensus       132 ~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHT  211 (279)
T KOG2462|consen  132 KCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHT  211 (279)
T ss_pred             eccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccccccc
Confidence            9999999999999999998        45688999999999863              9999999999999999999999


Q ss_pred             CCCCcc---ccccCcchhhhhhhccccccccccCCCceeeeeccccCCcCCC
Q 024455          103 LSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNG  151 (267)
Q Consensus       103 ~~~~~~---C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~~g~~~~~  151 (267)
                      |||||.   |+++|..+++|+.|+..+.+.        .-+.|..|++.|..
T Consensus       212 GEKPF~C~hC~kAFADRSNLRAHmQTHS~~--------K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  212 GEKPFSCPHCGKAFADRSNLRAHMQTHSDV--------KKHQCPRCGKSFAL  255 (279)
T ss_pred             CCCCccCCcccchhcchHHHHHHHHhhcCC--------ccccCcchhhHHHH
Confidence            999997   999999999999999877643        45789999987543

>PRK05601 DNA polymerase III subunit epsilon; Validated

Probab=99.71  E-value=1.3e-17  Score=142.69  Aligned_cols=98  Identities=17%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             cCCCceeeeeccccCCcC-CCCccceeeEEEe-cCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHH
Q 024455          132 CRGPKAVAMDCEMVGGGS-NGTLDLCARVCLV-DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (267)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vv-d~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~  209 (267)
                      .....++++|+|++|.+. .+++++|+.|.+. ++.....|+++|+|..++..  ..+||||+++|+++|+|.+|+.+|.
T Consensus        43 ~~~~~fVvlDiETTGLdp~~drIIeIgAV~i~~~g~ive~f~tLVnP~~~~~p--~~LHGIT~e~La~AP~f~eVl~el~  120 (377)
T PRK05601         43 IEAAPFVAVSIQTSGIHPSTSRLITIDAVTLTADGEEVEHFHAVLNPGEDPGP--FHLHGLSAEEFAQGKRFSQILKPLD  120 (377)
T ss_pred             CCCCCEEEEEEECCCCCCCCCeEEEEEEEEEEcCCEEEEEEEEEECcCCCCCC--ccccCCCHHHHhcCCCHHHHHHHHH
Confidence            344579999999999975 4678888999988 55556789999999876554  4799999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      +||              +|.+|||||+.||+.||..
T Consensus       121 ~fL--------------~g~vLVaHNA~FD~~FL~~  142 (377)
T PRK05601        121 RLI--------------DGRTLILHNAPRTWGFIVS  142 (377)
T ss_pred             HHh--------------CCCEEEEECcHHHHHHHHH
Confidence            999              8899999999999999965

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III

Probab=99.71  E-value=2.2e-17  Score=128.40  Aligned_cols=108  Identities=24%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             eeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCC
Q 024455          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (267)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~  216 (267)
                      ++++|+|++|.. .+++.+++.+.+.++.....++.+++|..++++..+++||||++++++++++++|+++|.+++    
T Consensus         1 ~v~~D~Ettg~~-~~~ii~ig~v~~~~~~~~~~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~~~l----   75 (156)
T cd06130           1 FVAIDFETANAD-RASACSIGLVKVRDGQIVDTFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIKPFL----   75 (156)
T ss_pred             CEEEEEeCCCCC-CCceEEEEEEEEECCEEEEEEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHHHHh----
Confidence            478999999865 567888888888766555668899999999999999999999999999999999999999999    


Q ss_pred             CCCcccccCCCceEEEeccchhhhcccc-------ccCCCCceecccccc
Q 024455          217 STGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYR  259 (267)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~~~Dl~~l~-------~~~~~~~~~dt~~~~  259 (267)
                                ++.+|||||+.||+.||+       +..+...+|||..+.
T Consensus        76 ----------~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~~~~  115 (156)
T cd06130          76 ----------GGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTVRLA  115 (156)
T ss_pred             ----------CCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHHHHH
Confidence                      668999999999999995       456677889997443

This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser

>PRK09146 DNA polymerase III subunit epsilon; Validated

Probab=99.71  E-value=2e-17  Score=136.70  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=97.0

Q ss_pred             ccCCCceeeeeccccCCcC-CCCccceeeEEEecCCC--CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHH
Q 024455          131 TCRGPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDE--NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (267)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~--~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~  207 (267)
                      ......++++|+|++|.+. .++++++|.|.+.++..  ...++.+|+|..+|+...+.+||||+++++++|++++|+.+
T Consensus        43 ~~~~~~~vviD~ETTGl~p~~d~IieIg~v~v~~~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~~~evl~~  122 (239)
T PRK09146         43 PLSEVPFVALDFETTGLDAEQDAIVSIGLVPFTLQRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPDLERILDE  122 (239)
T ss_pred             CcccCCEEEEEeECCCCCCCCCcEEEEEEEEEECCeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCCHHHHHHH
Confidence            4445678999999999874 56788999998876543  35688999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCceEEEeccchhhhcccccc-------CCCCceeccccc
Q 024455          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKY  258 (267)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-------~~~~~~~dt~~~  258 (267)
                      |.+++              ++.+|||||+.||+.||+-.       .+...+|||..+
T Consensus       123 l~~~~--------------~~~~lVaHna~FD~~fL~~~l~~~~~~~~~~~~iDTl~L  166 (239)
T PRK09146        123 LLEAL--------------AGKVVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEI  166 (239)
T ss_pred             HHHHh--------------CCCEEEEECHHHHHHHHHHHHHHhcCCCCCCceechHHH
Confidence            99999              77899999999999999643       234578999865

>PRK06310 DNA polymerase III subunit epsilon; Validated

Probab=99.71  E-value=1.6e-17  Score=138.43  Aligned_cols=112  Identities=17%  Similarity=0.257  Sum_probs=94.6

Q ss_pred             CceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          135 PKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ..++++|+|++|... .+++++++.|.+..+.....++.+|+|..+|+...+.+||||+++|+++|++.+|+.+|.+|++
T Consensus         7 ~~~v~~D~ETTGl~~~~d~IIEIa~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~~~fl~   86 (250)
T PRK06310          7 TEFVCLDCETTGLDVKKDRIIEFAAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQIKGFFK   86 (250)
T ss_pred             CcEEEEEEeCCCCCCCCCeEEEEEEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHHHHHhC
Confidence            468999999999863 4678898999887655556789999999999999999999999999999999999999999992


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhccccccCC---------CCceecccccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP---------DHMLRDTAKYR  259 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~---------~~~~~dt~~~~  259 (267)
                                   ++.+|||||+.||+.||+..++         ...+|||..+.
T Consensus        87 -------------~~~~lvghn~~FD~~~L~~~~~r~g~~~~~~~~~~iDtl~la  128 (250)
T PRK06310         87 -------------EGDYIVGHSVGFDLQVLSQESERIGETFLSKHYYIIDTLRLA  128 (250)
T ss_pred             -------------CCCEEEEECHHHHHHHHHHHHHHcCCCccccCCcEEehHHHH
Confidence                         3379999999999999964331         25789987543

>PRK07740 hypothetical protein; Provisional

Probab=99.68  E-value=5e-17  Score=134.97  Aligned_cols=113  Identities=28%  Similarity=0.315  Sum_probs=95.4

Q ss_pred             CCCceeeeeccccCCcCC--CCccceeeEEEecCCC-CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~--~~~~~i~~v~vvd~~~-~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~  209 (267)
                      ...+++++|+|++|....  +++++++.|.+.++.. ...|+.+|+|..++++...++||||+++|++++++.+|+.+|.
T Consensus        57 ~~~~~vv~D~ETTGl~p~~~deIIeIgaV~~~~~~i~~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~evl~~f~  136 (244)
T PRK07740         57 TDLPFVVFDLETTGFSPQQGDEILSIGAVKTKGGEVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHRFY  136 (244)
T ss_pred             cCCCEEEEEEeCCCCCCCCCCeEEEEEEEEEECCEEEEEEEEEEeCcCCCCChhheeccCCCHHHHhCCCCHHHHHHHHH
Confidence            455789999999998753  5788999999876554 4568889999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccccC-------CCCceecccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-------PDHMLRDTAKYR  259 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~-------~~~~~~dt~~~~  259 (267)
                      +|+              ++.+|||||+.||+.||+-..       ....+|||..+.
T Consensus       137 ~fi--------------~~~~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~  179 (244)
T PRK07740        137 AFI--------------GAGVLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLT  179 (244)
T ss_pred             HHh--------------CCCEEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHH
Confidence            999              778999999999999995321       134788988554

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family

Probab=99.68  E-value=9e-17  Score=131.54  Aligned_cols=100  Identities=20%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             CCCceeeeeccccCCcCCCCccceeeEEEecCCC-CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~-~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ....++++|+||+|......++++|.+.+.++.. ...|+.+++|..++++....+||||+++|+++|++++|+++|.+|
T Consensus         5 ~~~~fvv~D~ETTGl~~~~~IIeIgav~v~~~~~~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~~~~~~~   84 (217)
T TIGR00573         5 VLDTETTGDNETTGLYAGHDIIEIGAVEIINRRITGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIAEDFADY   84 (217)
T ss_pred             EecCEEEEEecCCCCCCCCCEEEEEEEEEECCCEeeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHHHHHHHH
Confidence            3456899999999988655589999999876642 357899999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccchhhhcccccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN  246 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~  246 (267)
                      +              ++.+|||||+.||+.||+-.
T Consensus        85 ~--------------~~~~lVaHNa~FD~~fL~~~  105 (217)
T TIGR00573        85 I--------------RGAELVIHNASFDVGFLNYE  105 (217)
T ss_pred             h--------------CCCEEEEeccHHHHHHHHHH
Confidence            9              67899999999999999743

All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06807 DNA polymerase III subunit epsilon; Validated

Probab=99.68  E-value=9.9e-17  Score=137.35  Aligned_cols=111  Identities=24%  Similarity=0.325  Sum_probs=96.3

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      ...++++|+|++|... .+++++++++.+.++.....++.+|+|..++++..+++||||+++|++++++++|+.+|++|+
T Consensus         7 ~~~~Vv~DlETTGl~p~~~eIIEIgaV~v~~g~i~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl~~f~~fl   86 (313)
T PRK06807          7 PLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLFLAFL   86 (313)
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHHHHHHHHH
Confidence            4468999999999875 368899999998766555568999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhccccc-------cCCCCceeccccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAKY  258 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~~~~~dt~~~  258 (267)
                                    ++.+|||||+.||+.||+-       ..|...+|||..+
T Consensus        87 --------------~~~~lVaHNa~FD~~fL~~~~~~~gl~~~~~~~iDtl~l  125 (313)
T PRK06807         87 --------------HTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL  125 (313)
T ss_pred             --------------cCCeEEEEcHHHHHHHHHHHHHHcCCCCCCCCEeeHHHH
Confidence                          6789999999999999952       3566788998754

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

Probab=99.67  E-value=8.6e-17  Score=126.56  Aligned_cols=108  Identities=21%  Similarity=0.332  Sum_probs=90.5

Q ss_pred             eeeeeccccCCcC--CCCccceeeEEEecCCC-CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          137 AVAMDCEMVGGGS--NGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       137 ~~~~dcE~~g~~~--~~~~~~i~~v~vvd~~~-~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ++++|+|++|...  ..++.+++.+.+.++.. ...++.+++|..++++..+++||||++++++++++++|+++|.+|+ 
T Consensus         1 ~v~~D~ETTGl~~~~~~~iieig~v~v~~~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~e~l~~~~~~~~v~~~l~~~l-   79 (167)
T cd06131           1 QIVLDTETTGLDPREGHRIIEIGCVELINRRLTGNTFHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFI-   79 (167)
T ss_pred             CEEEEeeCCCCCCCCCCeEEEEEEEEEECCcEeccEEEEEECCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHH-
Confidence            4789999999875  35788889998776542 2368899999999999999999999999999999999999999999 


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhccccccC----------CCCceeccccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY----------PDHMLRDTAKY  258 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~----------~~~~~~dt~~~  258 (267)
                                   ++.+|||||+.||+.||+-..          ....++||..+
T Consensus        80 -------------~~~~lv~hn~~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~  121 (167)
T cd06131          80 -------------RGAELVIHNASFDVGFLNAELSLLGLGKKIIDFCRVIDTLAL  121 (167)
T ss_pred             -------------CCCeEEEeChHHhHHHHHHHHHHhCCCcccccCCCceEhHHH
Confidence                         667999999999999996432          22467898643

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

Probab=99.66  E-value=7.3e-17  Score=152.10  Aligned_cols=120  Identities=24%  Similarity=0.302  Sum_probs=104.0

Q ss_pred             cCCCceeeeeccccCCcCC-CCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHH
Q 024455          132 CRGPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (267)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~  210 (267)
                      -....++++|.|++|.+.. +.++++|++.+.+++....++.+++|..|++...+++||||+++|++++++++|+.++.+
T Consensus       418 l~datyVVfDiETTGLs~~~d~iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~kf~~  497 (1444)
T COG2176         418 LDDATYVVFDIETTGLSPVYDEIIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFRE  497 (1444)
T ss_pred             cccccEEEEEeecCCcCcccchhhhheeeeeeCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHHHHH
Confidence            3445689999999999844 678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCceEEEeccchhhhccccccCC-------CCceeccc-----ccccccccc
Q 024455          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP-------DHMLRDTA-----KYRPLMKTN  265 (267)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~-------~~~~~dt~-----~~~~~~~~~  265 (267)
                      |+              +|+||||||+.||+.||+..+.       ...+|||-     .+|.|.++.
T Consensus       498 ~~--------------~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~  550 (1444)
T COG2176         498 FI--------------GDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHR  550 (1444)
T ss_pred             Hh--------------cCcEEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcc
Confidence            99              8999999999999999975432       33578886     445555443

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=99.66  E-value=2.9e-16  Score=135.00  Aligned_cols=107  Identities=18%  Similarity=0.256  Sum_probs=92.4

Q ss_pred             ceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCC-CccccccccccCCHHhhccCCCHHHHHHHHHHHHhc
Q 024455          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL-PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~-~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~  214 (267)
                      .++++|+|++|. ..+++++++.+.+.++.....++++|+|.. .+++..+.+||||+++|+++|+|.+|+++|.+|+  
T Consensus         2 ~~vviD~ETTg~-~~d~IieIgav~v~~g~i~~~f~~lv~P~~~~~~~~~~~IhGIT~e~v~~ap~f~ev~~~~~~fl--   78 (309)
T PRK06195          2 NFVAIDFETANE-KRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVEDELEFDKIWEKIKHYF--   78 (309)
T ss_pred             cEEEEEEeCCCC-CCCceEEEEEEEEECCEEEEEEEEEECCCCCCCChhheeccCcCHHHHhCCCCHHHHHHHHHHHh--
Confidence            478999999986 456788999999987766677999999984 5777889999999999999999999999999999  


Q ss_pred             CCCCCcccccCCCceEEEeccchhhhccccc-------cCCCCceecccc
Q 024455          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAK  257 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~~~~~dt~~  257 (267)
                                  ++.+|||||+.||+.||+.       ..|...++||..
T Consensus        79 ------------~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~idT~~  116 (309)
T PRK06195         79 ------------NNNLVIAHNASFDISVLRKTLELYNIPMPSFEYICTMK  116 (309)
T ss_pred             ------------CCCEEEEECcHHHHHHHHHHHHHhCCCCCCCCEEEHHH
Confidence                        7789999999999999953       346668899963

>PRK07983 exodeoxyribonuclease X; Provisional

Probab=99.66  E-value=2.2e-16  Score=128.72  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=86.9

Q ss_pred             eeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCC
Q 024455          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (267)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~  216 (267)
                      ++++|+|++|..  ..+++++.+.+.++.....++++++|..+|+...+.+||||+++++++|++++|+.+   |+    
T Consensus         2 ~~vlD~ETTGl~--~~IieIg~v~v~~~~i~~~~~~lv~P~~~i~~~~~~ihgIt~e~v~~ap~~~ev~~~---~~----   72 (219)
T PRK07983          2 LRVIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YY----   72 (219)
T ss_pred             eEEEEEECCCCC--CCCEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHcCCCCHHHHHHH---Hc----
Confidence            478999999975  458899999998776666799999999999999999999999999999999998776   56    


Q ss_pred             CCCcccccCCCceEEEeccchhhhccccccCCCCceeccccc
Q 024455          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKY  258 (267)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~  258 (267)
                                ++.+|||||+.||+.||...  ....|||-.+
T Consensus        73 ----------~~~~lVaHNa~FD~~~L~~~--~~~~idTl~l  102 (219)
T PRK07983         73 ----------GSEWYVAHNASFDRRVLPEM--PGEWICTMKL  102 (219)
T ss_pred             ----------CCCEEEEeCcHhhHHHHhCc--CCCcEeHHHH
Confidence                      66799999999999999753  3478898754

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.65  E-value=9.9e-17  Score=146.33  Aligned_cols=67  Identities=22%  Similarity=0.528  Sum_probs=59.7

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc---------CCCCCCC---cCCcccc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---------TGPLSKA---HCSGIFS   77 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---------~~~~~C~---~C~k~f~   77 (267)
                      .--|-.|-+|-+....++.|+.|.|+  |+|++| +|.+||+.|.++.+|+.|+         ..++.|+   +|-+.|.
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrt--HtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRT--HTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhc--ccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            34467899999999999999999999  999999 9999999999999999999         3467788   8888888


Q ss_pred             cc
Q 024455           78 DR   79 (267)
Q Consensus        78 ~~   79 (267)
                      ..
T Consensus       680 n~  681 (958)
T KOG1074|consen  680 NA  681 (958)
T ss_pred             cc
Confidence            64

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.65  E-value=2.6e-16  Score=150.78  Aligned_cols=110  Identities=22%  Similarity=0.317  Sum_probs=95.9

Q ss_pred             CCceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ...++++|+|++|.+..++++++|.|.+.++.....|+++|+|..+|++.++.+||||+++|+++|++++|+.+|.+++ 
T Consensus         6 ~~~~vvvD~ETTGl~~~d~IIeIgaV~v~~g~i~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~~~~~l-   84 (820)
T PRK07246          6 LRKYAVVDLEATGAGPNASIIQVGIVIIEGGEIIDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVARHIYDLI-   84 (820)
T ss_pred             CCCEEEEEEecCCcCCCCeEEEEEEEEEECCEEEEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHHHHHHHh-
Confidence            3468999999999976778999999999877666779999999999999999999999999999999999999999999 


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhcccccc-----C-CCCceecccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y-PDHMLRDTAK  257 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-----~-~~~~~~dt~~  257 (267)
                                   ++.++||||+.||+.||+-.     + .....|||..
T Consensus        85 -------------~~~~lVaHN~~FD~~fL~~~~~~~g~~~~~~~iDT~~  121 (820)
T PRK07246         85 -------------EDCIFVAHNVKFDANLLAEALFLEGYELRTPRVDTVE  121 (820)
T ss_pred             -------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCceeHHH
Confidence                         77999999999999999632     1 1235678763

>PRK09145 DNA polymerase III subunit epsilon; Validated

Probab=99.63  E-value=5.6e-16  Score=125.59  Aligned_cols=112  Identities=21%  Similarity=0.255  Sum_probs=93.0

Q ss_pred             CCCceeeeeccccCCcC-CCCccceeeEEEecCCCC--eeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDEN--VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~--~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~  209 (267)
                      ....++++|+||+|... .+++++++.|.+.++...  ..++.+|+|..++++..+++||||++++++++++++|+++|.
T Consensus        27 ~~~~~vviD~ETTGl~~~~d~IieIgaV~~~~~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~~~~vl~~~~  106 (202)
T PRK09145         27 PPDEWVALDCETTGLDPRRAEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLSEEEALRQLL  106 (202)
T ss_pred             CCCCEEEEEeECCCCCCCCCceEEEEEEEEECCEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCCHHHHHHHHH
Confidence            34578999999999874 467888898888765322  358899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccccC-------CCCceeccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-------PDHMLRDTAKY  258 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~-------~~~~~~dt~~~  258 (267)
                      +|+              ++.+|||||+.||+.||+...       ....++|++.+
T Consensus       107 ~~i--------------~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~id~~~l  148 (202)
T PRK09145        107 AFI--------------GNRPLVGYYLEFDVAMLNRYVRPLLGIPLPNPLIEVSAL  148 (202)
T ss_pred             HHH--------------cCCeEEEeCHHHHHHHHHHHHHHhcCCCCCCCeeeHHHH
Confidence            999              778999999999999996321       12357888643

>PRK06309 DNA polymerase III subunit epsilon; Validated

Probab=99.63  E-value=5.8e-16  Score=127.96  Aligned_cols=108  Identities=22%  Similarity=0.335  Sum_probs=89.8

Q ss_pred             ceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhc
Q 024455          136 KAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (267)
Q Consensus       136 ~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~  214 (267)
                      .++++|+||+|... .+++++++.   ++......++.+++|..+|+...+.+||||+++++++|++.+|+++|.+|++ 
T Consensus         3 ~~vv~D~ETTGl~~~~d~IIeig~---v~~~~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi~-   78 (232)
T PRK06309          3 ALIFYDTETTGTQIDKDRIIEIAA---YNGVTSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFCG-   78 (232)
T ss_pred             cEEEEEeeCCCCCCCCCEEEEEEE---EcCccccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHHc-
Confidence            47899999999873 356666665   4556667899999999999999999999999999999999999999999993 


Q ss_pred             CCCCCcccccCCCceEEEeccc-hhhhcccccc-------CCCCceecccccc
Q 024455          215 GESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN-------YPDHMLRDTAKYR  259 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~~-------~~~~~~~dt~~~~  259 (267)
                                  ++.+|||||+ .||+.||+-.       .+...+|||..++
T Consensus        79 ------------~~~~lVaHN~~~FD~~~L~~e~~r~g~~~~~~~~iDt~~l~  119 (232)
T PRK06309         79 ------------TDNILVAHNNDAFDFPLLRKECRRHGLEPPTLRTIDSLKWA  119 (232)
T ss_pred             ------------CCCEEEEeCCHHHHHHHHHHHHHHcCCCCCCCcEEeHHHHH
Confidence                        3569999995 8999999643       3456889997544

>PRK08517 DNA polymerase III subunit epsilon; Provisional

Probab=99.63  E-value=8.3e-16  Score=128.21  Aligned_cols=100  Identities=24%  Similarity=0.317  Sum_probs=88.0

Q ss_pred             ccCCCceeeeeccccCCcCC-CCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHH
Q 024455          131 TCRGPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (267)
Q Consensus       131 ~~~~~~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~  209 (267)
                      ......++++|+|++|.... ++++++|+|.+.++.....|+.+|+|. +++...+++||||+++++++|++++|+.+|.
T Consensus        64 ~~~~~~~vv~DiETTG~~~~~~~IIEIGAv~v~~g~i~~~f~~~v~p~-~ip~~~~~itGIt~e~l~~ap~~~evl~~f~  142 (257)
T PRK08517         64 PIKDQVFCFVDIETNGSKPKKHQIIEIGAVKVKNGEIIDRFESFVKAK-EVPEYITELTGITYEDLENAPSLKEVLEEFR  142 (257)
T ss_pred             CCCCCCEEEEEEeCCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECCC-CCChhhhhhcCcCHHHHcCCCCHHHHHHHHH
Confidence            34556789999999998754 478999999998765556789999996 8999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      +|+              ++.++||||+.||+.||+.
T Consensus       143 ~fl--------------~~~v~VaHNa~FD~~fL~~  164 (257)
T PRK08517        143 LFL--------------GDSVFVAHNVNFDYNFISR  164 (257)
T ss_pred             HHH--------------CCCeEEEECHHHHHHHHHH
Confidence            999              6789999999999999963

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=99.61  E-value=2e-15  Score=129.59  Aligned_cols=109  Identities=21%  Similarity=0.240  Sum_probs=89.4

Q ss_pred             CCceeeeeccccCCcCC-CCccceeeEEEe-cCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGSN-GTLDLCARVCLV-DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~-~~~~~i~~v~vv-d~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ...++++|+|++|.... +++++++.+.+. ++.....+..+++|..  +...+.+||||+++|+++|+|++++++|.+|
T Consensus        14 ~~~fvvlD~ETTGl~p~~d~IIeIgav~v~~~g~i~~~~~~lv~P~~--~~~~~~IhGIt~e~l~~ap~f~ev~~~l~~~   91 (313)
T PRK06063         14 PRGWAVVDVETSGFRPGQARIISLAVLGLDADGNVEQSVVTLLNPGV--DPGPTHVHGLTAEMLEGQPQFADIAGEVAEL   91 (313)
T ss_pred             CCCEEEEEEECCCCCCCCCEEEEEEEEEEECCceeeeEEEEEECcCC--CCCCeecCCCCHHHHhCCCCHHHHHHHHHHH
Confidence            45689999999998754 678888888886 4444557899999975  3467899999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccchhhhcccccc-------CCCCceeccccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKY  258 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-------~~~~~~~dt~~~  258 (267)
                      +              ++.+|||||+.||+.||+-.       .|...++||-.+
T Consensus        92 l--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~ldTl~l  131 (313)
T PRK06063         92 L--------------RGRTLVAHNVAFDYSFLAAEAERAGAELPVDQVMCTVEL  131 (313)
T ss_pred             c--------------CCCEEEEeCHHHHHHHHHHHHHHcCCCCCCCCEEehHHH
Confidence            9              77899999999999999643       343456787643

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.61  E-value=3.7e-16  Score=142.66  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=63.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhccccccccccCCCceeeeecc---ccCCcCCCCcc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCE---MVGGGSNGTLD  154 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE---~~g~~~~~~~~  154 (267)
                      |=+|-+..+-++.|+.|.|+|+||+||+   |++.|..+.+|+.|+..|..+-   ..+ +.+.|.   .|-..+...+.
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p---~~R-~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKP---PAR-VQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCc---ccc-ccccCCchhhhccccccccc
Confidence            9999999999999999999999999998   9999999999999997664321   111 567787   77666666666


Q ss_pred             ceeeEEEe
Q 024455          155 LCARVCLV  162 (267)
Q Consensus       155 ~i~~v~vv  162 (267)
                      +--+|++.
T Consensus       684 lpQhIriH  691 (958)
T KOG1074|consen  684 LPQHIRIH  691 (958)
T ss_pred             ccceEEee
Confidence            65666663

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

Probab=99.61  E-value=6.3e-16  Score=121.66  Aligned_cols=109  Identities=33%  Similarity=0.514  Sum_probs=91.6

Q ss_pred             eeeeeccccCCcCC-CCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          137 AVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       137 ~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      ++++|+|++|.... .++.+++.+.+.++.....|+.+|+|..+++++.++++|||++++++++++++|.++|.+++   
T Consensus         2 ~v~~D~Ettg~~~~~~~Iieig~v~~~~~~~~~~f~~~v~p~~~i~~~~~~~~Git~~~l~~~~~~~~~~~~~~~~l---   78 (169)
T smart00479        2 LVVIDCETTGLDPGKDEIIEIAAVDVDGGRIIVVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL---   78 (169)
T ss_pred             EEEEEeeCCCCCCCCCeEEEEEEEEEECCEeEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHh---
Confidence            58899999998765 67888888887766545679999999999999999999999999999999999999999999   


Q ss_pred             CCCCcccccCCCceEEEeccc-hhhhccccccCCC--------Cceecccccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGL-EHDLDSLRMNYPD--------HMLRDTAKYR  259 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~~~~~--------~~~~dt~~~~  259 (267)
                                 ++.++||||. .||+.||+..+.+        ..+|||..+.
T Consensus        79 -----------~~~~~v~~n~~~fD~~~L~~~~~~~~~~~~~~~~~iD~~~~~  120 (169)
T smart00479       79 -----------KGKILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLA  120 (169)
T ss_pred             -----------cCCEEEEeCCHHHhHHHHHHHHHHhCCCCCcCCCeeEHHHHH
Confidence                       5677888887 9999999764432        2368887544

>PRK07883 hypothetical protein; Validated

Probab=99.60  E-value=1.6e-15  Score=139.47  Aligned_cols=112  Identities=26%  Similarity=0.363  Sum_probs=97.3

Q ss_pred             CCCceeeeeccccCCcCC-CCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ....++++|+|++|.+.. .++.+++.|.+.++.....|+.+|+|..++++..+.+||||+++|++++++++|+.+|.+|
T Consensus        13 ~~~~~Vv~D~ETTGl~p~~~~IIEIgaV~v~~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl~~f~~f   92 (557)
T PRK07883         13 RDVTFVVVDLETTGGSPAGDAITEIGAVKVRGGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVLPAFLEF   92 (557)
T ss_pred             cCCCEEEEEEecCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHH
Confidence            345789999999998754 6889999999976655566899999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccchhhhccccc-------cCCCCceeccccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAKY  258 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~~~~~dt~~~  258 (267)
                      +              ++.+|||||+.||+.||+.       .+|...++||..+
T Consensus        93 l--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~iDTl~l  132 (557)
T PRK07883         93 A--------------RGAVLVAHNAPFDIGFLRAAAARCGYPWPGPPVLCTVRL  132 (557)
T ss_pred             h--------------cCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCcEecHHH
Confidence            9              6789999999999999963       4455678999643

>PRK07942 DNA polymerase III subunit epsilon; Provisional

Probab=99.60  E-value=1.8e-15  Score=124.93  Aligned_cols=116  Identities=18%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEec-CCCCeeEecccCCCCCccccccccccCCHHhhcc-CCCHHHHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVD-EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN-AMPLKEVKDKILE  210 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd-~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~-~~~~~~v~~~~~~  210 (267)
                      ...++++|+|++|.+. .+++++++.+.+.+ +.....++.+++|..+|++..+.+||||++++.+ ++++++|+.+|.+
T Consensus         5 ~~~~vv~D~ETTGl~p~~d~Iieig~v~v~~~g~~~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~~vl~e~~~   84 (232)
T PRK07942          5 PGPLAAFDLETTGVDPETARIVTAALVVVDADGEVVESREWLADPGVEIPEEASAVHGITTEYARAHGRPAAEVLAEIAD   84 (232)
T ss_pred             cCcEEEEEeccCCCCCCCCeeEEEEEEEEeCCCccccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHHHHHHHHHH
Confidence            3467999999999874 45677878777763 4444568889999999999999999999999976 6888899999988


Q ss_pred             HHhcCCCCCcccccCCCceEEEeccchhhhccccccCC--------CCceeccccc
Q 024455          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP--------DHMLRDTAKY  258 (267)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~--------~~~~~dt~~~  258 (267)
                      +|.....         ++.+|||||+.||+.||+-...        ...++||-.+
T Consensus        85 ~l~~~~~---------~~~~lVahNa~FD~~fL~~~~~r~~~~~~~~~~~iDt~~l  131 (232)
T PRK07942         85 ALREAWA---------RGVPVVVFNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVI  131 (232)
T ss_pred             HHHHHhh---------cCCEEEEeCcHhhHHHHHHHHHHcCCCCccCCcEeeHHHH
Confidence            8731111         4679999999999999964332        2356787644

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.59  E-value=2.1e-15  Score=146.74  Aligned_cols=109  Identities=27%  Similarity=0.393  Sum_probs=95.4

Q ss_pred             CceeeeeccccCCcC--CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          135 PKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~--~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      ..++++|+|++|...  .+++++++.+.+.++.....|+.+|+|..+|+++++++||||+++|+++|++++|+.+|.+|+
T Consensus         3 ~~~vvvD~ETTG~~p~~~d~IIeigav~v~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~l~~~l   82 (928)
T PRK08074          3 KRFVVVDLETTGNSPKKGDKIIQIAAVVVEDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIVELL   82 (928)
T ss_pred             CCEEEEEEeCCCCCCCCCCcEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHHHHHHh
Confidence            357999999999863  357999999999877666679999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhccccc-------cCCCCceecccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAK  257 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~~~~~dt~~  257 (267)
                                    +|.++||||+.||+.||+-       ..+...+|||..
T Consensus        83 --------------~~~~~VaHN~~FD~~fL~~~~~~~g~~~~~~~~iDt~~  120 (928)
T PRK08074         83 --------------EGAYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVE  120 (928)
T ss_pred             --------------CCCeEEEEChHHHHHHHHHHHHHcCCCCCCCCeeeHHH
Confidence                          7899999999999999963       223457889863

>PRK06722 exonuclease; Provisional

Probab=99.59  E-value=2.5e-15  Score=125.97  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             CceeeeeccccCCcC----CCCccceeeEEEecCCC--CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHH
Q 024455          135 PKAVAMDCEMVGGGS----NGTLDLCARVCLVDEDE--NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~----~~~~~~i~~v~vvd~~~--~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~  208 (267)
                      ..++++|.|+++...    .++++++|.|.+.++.+  ...|+++|+|..+|+++.+.+||||+++|+++|++++|+.+|
T Consensus         5 ~~~vViD~ETT~~p~~~~~~deIIEIGAVkV~~g~i~Ivd~F~sLV~P~~~I~~~i~~LTGIT~emV~~AP~f~eVl~ef   84 (281)
T PRK06722          5 THFIVFDIERNFRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKPGARLTRHTTKLTGITKKDLIGVEKFPQIIEKF   84 (281)
T ss_pred             CEEEEEEeeCCCCCCCCCCCCeEEEEEEEEEECCceeEEeeEEEEECCCCcCCHhHhhhcCCCHHHHcCCCCHHHHHHHH
Confidence            457899999986432    26789999999988743  455999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      .+|+              ++.++|+||+.||++||..
T Consensus        85 ~~fi--------------g~~~lvahna~FD~~FL~~  107 (281)
T PRK06722         85 IQFI--------------GEDSIFVTWGKEDYRFLSH  107 (281)
T ss_pred             HHHH--------------CCCcEEEEEeHHHHHHHHH
Confidence            9999              5567777788999999965

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins

Probab=99.59  E-value=2.2e-15  Score=119.47  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             eeeeeccccCCc--CCCCccceeeEEEecCCC-------------CeeEecccCCCCCccccccccccCCHHhhccCCCH
Q 024455          137 AVAMDCEMVGGG--SNGTLDLCARVCLVDEDE-------------NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPL  201 (267)
Q Consensus       137 ~~~~dcE~~g~~--~~~~~~~i~~v~vvd~~~-------------~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~  201 (267)
                      ++++|+|++|..  ..+++++++.+.+.++..             ...++++++|..+|++..+.+||||++++.+++++
T Consensus         1 ~vv~D~ETTGl~~~~~d~Iiei~av~v~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~a~~IhGIt~e~l~~~~~~   80 (177)
T cd06136           1 FVFLDLETTGLPKHNRPEITELCLVAVHRDHLLNTSRDKPALPRVLDKLSLCFNPGRAISPGASEITGLSNDLLEHKAPF   80 (177)
T ss_pred             CeEEeeecCCCCCCCCCceEEEEEEEEecccccccccccccccceeeeeeEEeCCCCcCChhHHHHhCcCHHHHhcCCCc
Confidence            478999999997  457889999999876531             23578999999999999999999999999999887


Q ss_pred             HH-HHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccccccC-------C-CCceecccccc
Q 024455          202 KE-VKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRMNY-------P-DHMLRDTAKYR  259 (267)
Q Consensus       202 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~~~-------~-~~~~~dt~~~~  259 (267)
                      ++ +.+.|.+|+...          +++.+|||||+ .||+.||+-..       + ....+||..+.
T Consensus        81 ~~~~~~~l~~f~~~~----------~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~  138 (177)
T cd06136          81 DSDTANLIKLFLRRQ----------PKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAF  138 (177)
T ss_pred             cHHHHHHHHHHHHhc----------CCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHH
Confidence            64 667777777320          03469999998 89999995432       2 23457876443

Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE

>PRK05168 ribonuclease T; Provisional

Probab=99.55  E-value=6.4e-15  Score=119.93  Aligned_cols=121  Identities=22%  Similarity=0.264  Sum_probs=90.3

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecC-CC----CeeEecccCC--CCCccccccccccCCHHh-hccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDE-DE----NVIFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~----~~~~~~~v~P--~~~i~~~~~~~~GIt~~~-l~~~~~~~~v  204 (267)
                      ...++++|.|++|.+. .+++++++.|.+... ++    ...|+.+|+|  ..+|+...+.+||||+++ +.++++++++
T Consensus        16 ~~~~vv~D~ETTGl~~~~d~IieIgaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~~~~~~~~~~   95 (211)
T PRK05168         16 GFLPVVIDVETAGFNAKTDALLEIAAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPLRGAVSEKEA   95 (211)
T ss_pred             CCceEEEEeeCCCCCCCCCEEEEEeEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhhhcCCChHHH
Confidence            4456899999999874 467889999998732 22    3578999999  468999999999999986 7888999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC----------CCCceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY----------PDHMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~----------~~~~~~dt~~~~  259 (267)
                      +.++++++.....    .. ...+.+|||||+.||+.||+...          +...++||..+.
T Consensus        96 l~~~~~~l~~~~~----~~-~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~iDt~~la  155 (211)
T PRK05168         96 LHEIFKMVRKGIK----AS-GCNRAILVAHNAHFDLSFLMAAAERAGLKRNPFHPFSTFDTATLS  155 (211)
T ss_pred             HHHHHHHHHHHHH----hc-ccCCceEEEeccHHhHHHHHHHHHHhCCCCCCCCCCcEeeHHHHH
Confidence            9888888731000    00 00257999999999999996432          234578987554

>PRK07748 sporulation inhibitor KapD; Provisional

Probab=99.55  E-value=7.4e-15  Score=119.42  Aligned_cols=108  Identities=20%  Similarity=0.260  Sum_probs=87.1

Q ss_pred             ceeeeeccccCCcC-------CCCccceeeEEEecCCCCeeEecccCCCC--CccccccccccCCHHhhccCCCHHHHHH
Q 024455          136 KAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       136 ~~~~~dcE~~g~~~-------~~~~~~i~~v~vvd~~~~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~  206 (267)
                      .++++|+|++|...       ..+++++++|.+.++.....|+++|+|..  +++++.+++||||+++|+++|++++|++
T Consensus         5 ~~vvlD~EtTg~~~~~~~~~~~~eIIeIGaV~v~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~l~~ap~~~evl~   84 (207)
T PRK07748          5 QFLFLDFEFTMPQHKKKPKGFFPEIIEVGLVSVVGCEVEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISFEELVE   84 (207)
T ss_pred             eEEEEEeecCCcCCCCCCCCCCCceEEEeEEEEecCcChhhhcceECCCccCccChhhhhhcCcCHHHHccCCCHHHHHH
Confidence            57999999998532       35789999999987766677999999986  6899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCc-eEEEeccchhhhccccc-------cCCC-Cceecccc
Q 024455          207 KILEILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRM-------NYPD-HMLRDTAK  257 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~-~~lvgh~~~~Dl~~l~~-------~~~~-~~~~dt~~  257 (267)
                      +|.+|+              ++ .++|+|+..||+.||+.       ..|- ..++|++.
T Consensus        85 ~f~~~~--------------~~~~~~iv~~~~fD~~fL~~~~~~~~~~~~~~~~~~dl~~  130 (207)
T PRK07748         85 KLAEYD--------------KRCKPTIVTWGNMDMKVLKHNCEKAGVPFPFKGQCRDLSL  130 (207)
T ss_pred             HHHHHh--------------CcCCeEEEEECHHHHHHHHHHHHHcCCCCcccccceeHHH
Confidence            999999              44 34444557999999953       2232 25667764

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T

Probab=99.54  E-value=4.8e-15  Score=118.74  Aligned_cols=119  Identities=23%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             ceeeeeccccCCcC-CCCccceeeEEEecC-CC----CeeEecccCC--CCCccccccccccCCHHh-hccCCCHHHHHH
Q 024455          136 KAVAMDCEMVGGGS-NGTLDLCARVCLVDE-DE----NVIFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKEVKD  206 (267)
Q Consensus       136 ~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~----~~~~~~~v~P--~~~i~~~~~~~~GIt~~~-l~~~~~~~~v~~  206 (267)
                      ..+++|+||+|.+. .+++++++.|.+.+. ++    ...|+++++|  ..+|+....++||||+++ +..++..++++.
T Consensus         6 ~~vv~D~ETTGl~~~~d~Iieigav~v~~~~~~~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~~~~~~~~~~~~~~~~   85 (189)
T cd06134           6 LPVVVDVETGGFNPQTDALLEIAAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEKEALK   85 (189)
T ss_pred             eeEEEEecCCCCCCCCCeEEEEEEEEEEECCCCceeccceEEEEEcCCCCCCCCHHHHhhcCCCchhhhccccchHHHHH
Confidence            45899999999874 467899999999853 22    3578999999  578999999999999987 566676666666


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEeccchhhhcccccc----------CCCCceecccccc
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN----------YPDHMLRDTAKYR  259 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~----------~~~~~~~dt~~~~  259 (267)
                      ++++++.+.-    . ....++.+|||||+.||+.||+..          ++...++||..+.
T Consensus        86 ~~~~~l~~~~----~-~~~~~~~~lVaHna~FD~~fL~~~~~~~~~~~~~~~~~~~lDt~~la  143 (189)
T cd06134          86 EIFKPIRKAL----K-AQGCTRAILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLA  143 (189)
T ss_pred             HHHHHHHHHH----h-hcccCCCeEEEecchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHH
Confidence            6666552100    0 000035799999999999999642          2234578987654

RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative

Probab=99.54  E-value=1.4e-14  Score=140.29  Aligned_cols=107  Identities=23%  Similarity=0.316  Sum_probs=93.2

Q ss_pred             eeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          137 AVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       137 ~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      ++++|+||+|... .++++++|.|.+.++.....|+++|+|..+|++..+.+||||+++++++|++++|+.+|.+++   
T Consensus         2 ~vvvD~ETTG~~~~~~~IIeig~v~v~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~l~~~l---   78 (850)
T TIGR01407         2 YAVVDLETTGTQLSFDKIIQIGIVVVEDGEIVDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQEIYDLL---   78 (850)
T ss_pred             EEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHHHHHHh---
Confidence            6899999999873 478899999998776656679999999999999999999999999999999999999999999   


Q ss_pred             CCCCcccccCCCceEEEeccchhhhcccccc-------CCCCceecccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAK  257 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-------~~~~~~~dt~~  257 (267)
                                 ++.++||||+.||+.||+-.       .....++||..
T Consensus        79 -----------~~~~~VahN~~fD~~fL~~~~~~~g~~~~~~~~iDt~~  116 (850)
T TIGR01407        79 -----------EDGIFVAHNVHFDLNFLAKALKDCGYEPLPKPRIDTVE  116 (850)
T ss_pred             -----------CCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCeEeHHH
Confidence                       77899999999999999642       12446788763

This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.

>TIGR01298 RNaseT ribonuclease T

Probab=99.54  E-value=1.2e-14  Score=117.28  Aligned_cols=121  Identities=22%  Similarity=0.244  Sum_probs=88.7

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecC-CCC----eeEecccCCC--CCccccccccccCCHH-hhccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDE-DEN----VIFHTYVQPQ--LPVTNYRYEVTGLTEE-DIKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~~----~~~~~~v~P~--~~i~~~~~~~~GIt~~-~l~~~~~~~~v  204 (267)
                      ...++++|+||+|.+. .++++++|.|.+... .+.    ..++.+++|.  .+|+.....+||||++ ++.++++.+++
T Consensus         7 ~~~~vv~D~ETTGl~~~~d~IieIgav~v~~~~~g~i~~~~~f~~~v~p~p~~~i~~~a~~ihGIt~~~~~~~~~~~~~~   86 (200)
T TIGR01298         7 GYLPVVVDVETGGFNAKTDALLEIAAITLKMDEQGWLFPDTTLHFHVEPFEGANIQPEALEFTGIDLDHPLRGAVSEYEA   86 (200)
T ss_pred             CCeeEEEEeeCCCCCCCCCeEEEEEEEEEEEcCCCcEeecceeEEEEcCCCCCCCCHHHHHccCCChhhhhhcCcchHHH
Confidence            3456899999999885 457889999998732 333    3488999974  7899999999999976 68899998888


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC----------CCCceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY----------PDHMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~----------~~~~~~dt~~~~  259 (267)
                      +.++++++....     .+...++.+|||||+.||+.||+...          +...++||..+.
T Consensus        87 ~~~~~~~l~~~~-----~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~lDTl~la  146 (200)
T TIGR01298        87 LHEIFKVVRKAM-----KASGCQRAILVGHNANFDLGFLNAAVERTSLKRNPFHPFSTFDTATLA  146 (200)
T ss_pred             HHHHHHHHHHHH-----HhcccCCCEEEEECchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHH
Confidence            888888762100     00000357999999999999996421          234578998655

in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type

Probab=99.53  E-value=6.6e-15  Score=144.49  Aligned_cols=113  Identities=24%  Similarity=0.360  Sum_probs=97.4

Q ss_pred             CCCceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ....++++|+|++|.+. .++++++++|.+.++.....|+.+|+|..+|++..+++||||+++|++++++++|+++|++|
T Consensus       188 ~~~~~VVfDiETTGL~~~~d~IIEIGAVkv~~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f~~f  267 (1213)
T TIGR01405       188 DDATYVVFDIETTGLSPQYDEIIEFGAVKVKNGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEF  267 (1213)
T ss_pred             cCCcEEEEEeEecCCCCCCCeEEEEEEEEEECCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHH
Confidence            34578999999999874 46789999999988766667999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccchhhhccccccC-------CCCceecccccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-------PDHMLRDTAKYR  259 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~-------~~~~~~dt~~~~  259 (267)
                      +              ++.+|||||+.||+.||+-.+       ....+|||..+.
T Consensus       268 l--------------~~~iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~la  308 (1213)
T TIGR01405       268 F--------------KDSILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELA  308 (1213)
T ss_pred             h--------------CCCeEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHH
Confidence            9              778999999999999996432       224678887433

The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

Probab=99.53  E-value=2.4e-14  Score=119.47  Aligned_cols=97  Identities=29%  Similarity=0.428  Sum_probs=89.1

Q ss_pred             CceeeeeccccCCcC-CCCccceeeEEEecCCCCee-EecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          135 PKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVI-FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~-~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      ..++++|+|++|... .+++++++.|.+.++..... ++.+++|..+|++...+++|||.+++.++|.+.++.+++.+++
T Consensus        13 ~~~vv~D~ETtg~~~~~~~iieIgav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~i   92 (243)
T COG0847          13 TRFVVIDLETTGLNPKKDRIIEIGAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFI   92 (243)
T ss_pred             CcEEEEecccCCCCCCCCceEEEEeEEEECCeeecceeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHHHHHHHH
Confidence            457999999999985 78999999999998866544 9999999989999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCc-eEEEeccchhhhccccc
Q 024455          213 NNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~lvgh~~~~Dl~~l~~  245 (267)
                                    .+ .++||||+.||+.||+.
T Consensus        93 --------------~~~~~~Vahna~fD~~fl~~  112 (243)
T COG0847          93 --------------GGLRLLVAHNAAFDVGFLRV  112 (243)
T ss_pred             --------------CCCCeEEEEchhhcHHHHHH
Confidence                          56 89999999999999964

>PRK05359 oligoribonuclease; Provisional

Probab=99.51  E-value=1.1e-14  Score=115.46  Aligned_cols=116  Identities=14%  Similarity=0.060  Sum_probs=86.6

Q ss_pred             CceeeeeccccCCcC-CCCccceeeEEEecCC--CCeeEecccCCCCC----ccccccccc---cCCHHhhccCCCHHHH
Q 024455          135 PKAVAMDCEMVGGGS-NGTLDLCARVCLVDED--ENVIFHTYVQPQLP----VTNYRYEVT---GLTEEDIKNAMPLKEV  204 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~--~~~~~~~~v~P~~~----i~~~~~~~~---GIt~~~l~~~~~~~~v  204 (267)
                      ..++++|+||+|.+. .+++.++|.|.+.++.  ....++.+++|...    ++.+...+|   |||++++++++++++|
T Consensus         3 ~~~vvlD~ETTGLdp~~d~IieIgaV~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~~~e~   82 (181)
T PRK05359          3 DNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVSEAEA   82 (181)
T ss_pred             CcEEEEEeecCCCCCCCCeEEEEEEEEEcCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCCHHHH
Confidence            458999999999874 4678888888664332  22348888998754    466777776   8999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC------CCCceeccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY------PDHMLRDTAKY  258 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~------~~~~~~dt~~~  258 (267)
                      +.+|++|+++    +.+    ..+.+|||||+.||+.||+...      ....++|++.+
T Consensus        83 ~~~~l~fl~~----~~~----~~~~~l~g~~v~FD~~FL~~~~~~~~~~l~~~~~Dv~tl  134 (181)
T PRK05359         83 EAQTLEFLKQ----WVP----AGKSPLCGNSIGQDRRFLARYMPELEAYFHYRNLDVSTL  134 (181)
T ss_pred             HHHHHHHHHH----hcC----CCCCceeecchhhCHHHHHHHHHHhcccCCCcccchhHH
Confidence            9999999942    000    1356899999999999997643      23456675433

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family

Probab=99.51  E-value=2.5e-14  Score=110.88  Aligned_cols=108  Identities=27%  Similarity=0.324  Sum_probs=92.2

Q ss_pred             eeeeccccCCcC-CCCccceeeEEEecC-CCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          138 VAMDCEMVGGGS-NGTLDLCARVCLVDE-DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       138 ~~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      +.+|+|++|... ..++.+++.+.+.+. .....++.+++|..++.+..+.++||+++++++++++.++..+|.+++   
T Consensus         1 v~~D~Ettg~~~~~~~iiei~~v~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l---   77 (159)
T cd06127           1 VVFDTETTGLDPKKDRIIEIGAVKVDGGIEIVERFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFLEFL---   77 (159)
T ss_pred             CeEEeeCCCcCCCCCeEEEEEEEEEECCcChhhhhheeeCcCCcCCHhheeccCCCHHHHhcCCCHHHHHHHHHHHH---
Confidence            468999999875 677888888887655 455678999999999999999999999999999999999999999999   


Q ss_pred             CCCCcccccCCCceEEEeccchhhhcccccc-------CCCCceecccccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYR  259 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~-------~~~~~~~dt~~~~  259 (267)
                                 .+.++||||+.||+.||+..       .+...++||..+.
T Consensus        78 -----------~~~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~iDt~~~~  117 (159)
T cd06127          78 -----------GGRVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLA  117 (159)
T ss_pred             -----------CCCEEEEeCcHhhHHHHHHHHHHhCCCCCCCCeeEHHHHH
Confidence                       55899999999999999754       3466889998543

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.48  E-value=1.7e-14  Score=120.26  Aligned_cols=110  Identities=27%  Similarity=0.419  Sum_probs=98.1

Q ss_pred             ccc--ccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-------CCCCCCCcCCccccccc----
Q 024455           15 HKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDRG----   80 (267)
Q Consensus        15 ~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-------~~~~~C~~C~k~f~~~~----   80 (267)
                      +.|  ..|-+.|..++.|.+|.++  |++++. .|+.||..|+++..|-.|.       +.+|.|..|.|.|...+    
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~--Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~  255 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRT--HSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKS  255 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHh--cCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHH
Confidence            666  7899999999999999999  999999 9999999999999999997       56899999999999874    


Q ss_pred             ----------ccccccccCChhhHHHHHH-HhcCCCCcc---ccccCcchhhhhhhcccc
Q 024455           81 ----------CNLCMNIFDSPSSLIKHKE-ACSLSAPVP---FEKTLSNAESQKKISGAI  126 (267)
Q Consensus        81 ----------C~~C~~~F~~~~~L~~H~~-~h~~~~~~~---C~~~f~~~~~l~~H~~~~  126 (267)
                                |+.|..+-...+.|.+|++ .|...|||+   |++.+.+.+.|.+|...+
T Consensus       256 Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H  315 (467)
T KOG3608|consen  256 HVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH  315 (467)
T ss_pred             HHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc
Confidence                      9999999999999999987 577888987   778888888888888644

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins

Probab=99.47  E-value=5e-14  Score=112.36  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             eeeccccCCcC-CCCccceeeEEEecC-CCCeeEecccCCCC--CccccccccccCCHHhhcc-CCCHHHHHHHHHHHHh
Q 024455          139 AMDCEMVGGGS-NGTLDLCARVCLVDE-DENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKN-AMPLKEVKDKILEILN  213 (267)
Q Consensus       139 ~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~-~~~~~~v~~~~~~~~~  213 (267)
                      .+|+||+|.+. .+++++++.|.+.++ .....++.+++|..  +++.....+||||+++|.+ ++++.+++++|.+|+.
T Consensus         2 ~~D~ETTGl~~~~d~Iieig~v~v~~~~~~~~~~~~~v~p~~~~~~~~~a~~ihGIt~e~l~~~~~~~~~~l~~~~~~~~   81 (183)
T cd06138           2 FYDYETFGLNPSFDQILQFAAIRTDENFNEIEPFNIFCRLPPDVLPSPEALIVTGITPQQLLKEGLSEYEFIAKIHRLFN   81 (183)
T ss_pred             EEEeecCCCCCCCCceEEEEEEEECCCCCCccceeEEEeCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHc
Confidence            68999999874 457888888877654 33356889999874  5677789999999999999 8999999999999994


Q ss_pred             cCCCCCcccccCCCceEEEecc-chhhhccccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~-~~~Dl~~l~~  245 (267)
                      +            .+.+||||| +.||+.||+.
T Consensus        82 ~------------~~~~lVahn~~~FD~~fL~~  102 (183)
T cd06138          82 T------------PGTCIVGYNNIRFDDEFLRF  102 (183)
T ss_pred             c------------CCCcEEeeCchhhHHHHHHH
Confidence            2            356999997 8999999964

This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III

Probab=99.46  E-value=2e-14  Score=111.83  Aligned_cols=94  Identities=30%  Similarity=0.501  Sum_probs=85.7

Q ss_pred             eeeeccccCCcC-CCCccceeeEEEecCC--CCeeEecccCCCCC--ccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          138 VAMDCEMVGGGS-NGTLDLCARVCLVDED--ENVIFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       138 ~~~dcE~~g~~~-~~~~~~i~~v~vvd~~--~~~~~~~~v~P~~~--i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      +++|+|++|... ...+.+++.+.+.+..  ....++.+|+|..+  ++++.+++||||.++|++++++.++.+++.+++
T Consensus         1 v~~D~Ettg~~~~~~~iieig~v~~~~~~~~~~~~~~~~i~p~~~~~i~~~~~~~~gIt~~~l~~~~~~~~~~~~~~~~~   80 (164)
T PF00929_consen    1 VVFDTETTGLDPRQDEIIEIGAVKVDDDENEEVESFNSLIRPEEPPKISPWATKVHGITQEDLEDAPSFEEALDEFEEFL   80 (164)
T ss_dssp             EEEEEEESSSTTTTCTEEEEEEEEEETTTTEEEEEEEEEBEHSSHCSSEHHHHHHHHHCHHHHHCHCEHHHHHHHHHHHH
T ss_pred             cEEEeEcCCCCCCCCeEEEEEEEEeeCCccccceeeeecccccccccCCHHHeeecCCcccccccCCcHHHHHHhhhhhh
Confidence            478999999986 6789999999999887  56779999999988  999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhcccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLR  244 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~  244 (267)
                      .             ++.++||||+.||..+|.
T Consensus        81 ~-------------~~~~~v~~n~~fd~~~l~   99 (164)
T PF00929_consen   81 K-------------KNDILVGHNASFDIGFLR   99 (164)
T ss_dssp             H-------------HHTEEEETTCCHEEESSH
T ss_pred             h-------------cccccccccccchhhHHH
Confidence            4             367999999999999985

Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins

Probab=99.40  E-value=1.8e-13  Score=108.08  Aligned_cols=111  Identities=19%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             eeeeccccCCcC-CCCccceeeEEEecCCC--CeeEecccCCCCCcc----cccccc---ccCCHHhhccCCCHHHHHHH
Q 024455          138 VAMDCEMVGGGS-NGTLDLCARVCLVDEDE--NVIFHTYVQPQLPVT----NYRYEV---TGLTEEDIKNAMPLKEVKDK  207 (267)
Q Consensus       138 ~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~--~~~~~~~v~P~~~i~----~~~~~~---~GIt~~~l~~~~~~~~v~~~  207 (267)
                      +++|+||+|.+. .++++++|.|.+.+..+  ...|+.+++|..+++    .+...+   +||+++++++++++.+|+.+
T Consensus         2 v~iD~ETTGl~p~~d~IieIgaV~~~~~~~~i~~~f~~~i~p~~~~~~~~~~~~~~ih~~tgIt~~~l~~~~~~~~vl~~   81 (173)
T cd06135           2 VWIDLEMTGLDPEKDRILEIACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHTKSGLTERVRASTVTLAQAEAE   81 (173)
T ss_pred             EEEEEecCCCCCCCCeeEEEEEEEEeCCCceecCceeEEECCCHHHhhhccHHHHHcccccccHHHHHhCCCCHHHHHHH
Confidence            689999999984 57789999997755432  356899999987654    344555   59999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC------CCceeccc
Q 024455          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDTA  256 (267)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~------~~~~~dt~  256 (267)
                      |.+|+.+.-        ...+.+|||||+.||+.||+...+      ....+||.
T Consensus        82 ~~~f~~~~~--------~~~~~~lvgh~~~FD~~fL~~~~~~~~~~~~~~~~D~~  128 (173)
T cd06135          82 LLEFIKKYV--------PKGKSPLAGNSVHQDRRFLDKYMPELEEYLHYRILDVS  128 (173)
T ss_pred             HHHHHHHhc--------CCCCCceeecchhhCHHHHHHHHHHHhccCCcchhhHH
Confidence            999994200        002369999999999999975432      22457773

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.

>PRK09182 DNA polymerase III subunit epsilon; Validated

Probab=99.38  E-value=6e-13  Score=113.06  Aligned_cols=98  Identities=19%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecC-CC-----CeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDE-DE-----NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~-~~-----~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~  206 (267)
                      ...++++|+||+|.+. .+++++||.|.+... .+     ...++.+++|..+|+...+.+||||++++++++...   +
T Consensus        36 ~~~~vvlD~ETTGLd~~~d~IIEIg~V~v~~~~~g~i~~v~~~~~~lv~P~~~I~~~~t~IhGIt~e~v~~~~~~~---~  112 (294)
T PRK09182         36 VRLGVILDTETTGLDPRKDEIIEIGMVAFEYDDDGRIGDVLDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTIDP---A  112 (294)
T ss_pred             CCeEEEEEeeCCCCCCCCCeEEEEEEEEEEecCCCceeeeeeEEEEEeCCCCCCCHHHHHhcCCCHHHHhcCCCcH---H
Confidence            3457899999999974 467899999988732 22     345888999999999999999999999999987653   3


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY  247 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~  247 (267)
                      .|.+|+.             .+.+|||||+.||+.||+...
T Consensus       113 ~l~~fl~-------------~~~vlVAHNA~FD~~fL~~~~  140 (294)
T PRK09182        113 AVDALIA-------------PADLIIAHNAGFDRPFLERFS  140 (294)
T ss_pred             HHHHHhc-------------CCCEEEEeCHHHHHHHHHHHH
Confidence            4677783             335999999999999997543

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.38  E-value=1.5e-13  Score=123.94  Aligned_cols=107  Identities=24%  Similarity=0.382  Sum_probs=90.9

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC--CcccchhhcCCHHHHHhhcCCC---------CCCCcCCccccccccc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHLTGP---------LSKAHCSGIFSDRGCN   82 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~--~C~~C~~~f~~~~~l~~H~~~~---------~~C~~C~k~f~~~~C~   82 (267)
                      ...|+.|.+.+.+-..|+.|++.+ |....+  .|..|.+.|+.+..|.+|+.-.         ..=..|.+.|+   |.
T Consensus       210 lltcpycdrgykrltslkeHikyr-hekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFK---Ct  285 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYR-HEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFK---CT  285 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHH-HhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccc---cc
Confidence            467999999999999999999874 665444  9999999999999999999222         22245555555   99


Q ss_pred             ccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcc
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISG  124 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~  124 (267)
                      +|||.|..+-.|+.|+|+|+|||||+   |.+.|+...+...|+.
T Consensus       286 ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  286 ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            99999999999999999999999998   8899999999999984

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.34  E-value=3.2e-13  Score=104.65  Aligned_cols=67  Identities=25%  Similarity=0.439  Sum_probs=57.9

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSD   78 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~   78 (267)
                      ++.-.|.|.+|+|.|.-...|.+|++-  |+..+. .|..|||.|...-.|++|+     .+||+|..|+|.|.+
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kc--h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq  185 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKC--HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ  185 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhh--ccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence            456689999999999999999999999  998777 9999999999999999999     468887666555554

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

Probab=99.33  E-value=2.6e-12  Score=101.77  Aligned_cols=109  Identities=25%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             eeeeeccccCCcCC------CCccceeeEEEecCCC--CeeEecccCCCC--CccccccccccCCHHhhccCCCHHHHHH
Q 024455          137 AVAMDCEMVGGGSN------GTLDLCARVCLVDEDE--NVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       137 ~~~~dcE~~g~~~~------~~~~~i~~v~vvd~~~--~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~  206 (267)
                      ++++|+|++|....      .++++++.+.+.+...  ...|+.+|+|..  +++++.++++|||++++++++++++|++
T Consensus         1 ~vv~D~Ettg~~~~~~~~~~~~IieIgav~v~~~~~~~~~~f~~~i~P~~~~~i~~~~~~i~gIt~e~l~~~~~~~~vl~   80 (176)
T cd06133           1 YLVIDFEATCWEGNSKPDYPNEIIEIGAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLK   80 (176)
T ss_pred             CEEEEeeccccCCCCCCCCCcceEEEEEEEEEcCCCeEEeeeeeeECCCcCCchhHHHHHhcCcCHHHHhcCCCHHHHHH
Confidence            47899999998753      6788888888876554  457999999997  8999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCce--EEEeccchhhhcccccc----------CCCCceecccccc
Q 024455          207 KILEILNNGESTGRLMLDDGKAR--LLVGHGLEHDLDSLRMN----------YPDHMLRDTAKYR  259 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~--~lvgh~~~~Dl~~l~~~----------~~~~~~~dt~~~~  259 (267)
                      +|.+|+              ++.  .+++|+..||+.+|.-.          ......+|++.++
T Consensus        81 ~~~~~l--------------~~~~~~~~v~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~D~~~~~  131 (176)
T cd06133          81 EFLEWL--------------GKNGKYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEF  131 (176)
T ss_pred             HHHHHH--------------HhCCCeEEEeecHhhHHHHHHHHHHhcCCCCcccccceEEHHHHH
Confidence            999999              444  45555569998876421          1233677887544

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=99.28  E-value=5.9e-12  Score=125.50  Aligned_cols=110  Identities=22%  Similarity=0.327  Sum_probs=94.9

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      ...++++|+|++|... ..++++++.+.+.++.....|+.+|+|..+++...+++||||++++.+++++.+|+++|.+|+
T Consensus       418 ~~~~VVfDLETTGL~~~~deIIEIgAV~V~~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~f~~fi  497 (1437)
T PRK00448        418 DATYVVFDVETTGLSAVYDEIIEIGAVKIKNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFC  497 (1437)
T ss_pred             cCcEEEEEhhhcCCCCchhhhheeeeEEEeCCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHHHHHHh
Confidence            3468999999999874 356888899988877666789999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhcccc-------ccCCCCceecccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAK  257 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~-------~~~~~~~~~dt~~  257 (267)
                                    +|.+|||||+.||+.||+       +..+...++||-.
T Consensus       498 --------------gg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLe  535 (1437)
T PRK00448        498 --------------GDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLE  535 (1437)
T ss_pred             --------------CCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHH
Confidence                          789999999999999984       3234556788753

>PTZ00315 2'-phosphotransferase; Provisional

Probab=99.27  E-value=1e-11  Score=112.63  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CceeeeeccccCCcC----CCCccceeeEEEe--cCCCCeeEecccCCCC--CccccccccccCCHHhhccCCCHHHHHH
Q 024455          135 PKAVAMDCEMVGGGS----NGTLDLCARVCLV--DEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~----~~~~~~i~~v~vv--d~~~~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~  206 (267)
                      ..++++|.|++|...    ..++++++.|.+.  ++.....|+.||+|..  +++.+.+++||||+++|+++|+|++|+.
T Consensus        56 d~~IV~DlETTgl~~~~~~~dEIIEIGaV~Vd~~ng~Ii~~F~~yVkP~~~p~Ls~fct~LTGITqe~V~~Ap~F~eVl~  135 (582)
T PTZ00315         56 DAYVVLDFEATCEADRRIEDAEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRADPFPVVYC  135 (582)
T ss_pred             CeEEEEEEecCCCCCCCCCCCceEEEEEEEEEccCCEEEEEEEEEECCCCCCCCChhHhhhcCcCHHHHhcCCCHHHHHH
Confidence            467899999999753    3678899999985  3344567999999986  6999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEeccchhhhc-cc
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SL  243 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~-~l  243 (267)
                      +|.+||.+..- .  .. .+.+.++|+||..||+. ||
T Consensus       136 ef~~fL~~~~~-~--e~-~~~~~~~vah~g~fDl~~fL  169 (582)
T PTZ00315        136 EALQFLAEAGL-G--DA-PPLRSYCVVTCGDWDLKTML  169 (582)
T ss_pred             HHHHHHhcccc-c--cc-cccCceEEEeccHHHHHHHH
Confidence            99999954210 0  00 01235899999999995 77

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.23  E-value=8.1e-12  Score=104.48  Aligned_cols=114  Identities=18%  Similarity=0.327  Sum_probs=60.6

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhc------CCCCCCCcCCccccccc-------
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL------TGPLSKAHCSGIFSDRG-------   80 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~------~~~~~C~~C~k~f~~~~-------   80 (267)
                      +|.|..|.|.|.+...|..|+..  |-.- .+|+.|.......++|..|+      .+||+|+.|++.|...+       
T Consensus       237 ~fqC~~C~KrFaTeklL~~Hv~r--Hvn~-ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~  313 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLKSHVVR--HVNC-YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ  313 (467)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHH--hhhc-ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH
Confidence            45555555555555555555554  3321 15555555555555555555      34566666666555432       


Q ss_pred             --------ccc--cccccCChhhHHHHHHHhc-CCC--Ccc---ccccCcchhhhhhhcccccccc
Q 024455           81 --------CNL--CMNIFDSPSSLIKHKEACS-LSA--PVP---FEKTLSNAESQKKISGAIDEKR  130 (267)
Q Consensus        81 --------C~~--C~~~F~~~~~L~~H~~~h~-~~~--~~~---C~~~f~~~~~l~~H~~~~~~~r  130 (267)
                              |+.  |..+|.....+++|++.++ |..  +|.   |++.|.+-.+|..|....++-+
T Consensus       314 ~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  314 VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhccc
Confidence                    555  6666666666666655544 332  222   5666666666666654444433

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.20  E-value=7.3e-12  Score=113.32  Aligned_cols=81  Identities=28%  Similarity=0.522  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccc
Q 024455            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFS   77 (267)
Q Consensus         4 ~~~~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~   77 (267)
                      ++.+-++.+.+|.|++|.|.|...++|.+|.--  |+|.+| +|.+|.|.|..+..|..|+     ++||+|        
T Consensus       884 ~tk~~kte~gmyaCDqCDK~FqKqSSLaRHKYE--HsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQC--------  953 (1007)
T KOG3623|consen  884 ETKHAKTEDGMYACDQCDKAFQKQSSLARHKYE--HSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQC--------  953 (1007)
T ss_pred             ccccccCccccchHHHHHHHHHhhHHHHHhhhh--hcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchh--------
Confidence            344556778889999999999999999999988  999888 8888887777777777776     445543        


Q ss_pred             cccccccccccCChhhHHHHH
Q 024455           78 DRGCNLCMNIFDSPSSLIKHK   98 (267)
Q Consensus        78 ~~~C~~C~~~F~~~~~L~~H~   98 (267)
                          +.|+|.|+....+.+||
T Consensus       954 ----dKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  954 ----DKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             ----hhhhhhcccccchHhhh
Confidence                34555555555566665

>PRK11779 sbcB exonuclease I; Provisional

Probab=99.18  E-value=6e-11  Score=106.72  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=79.7

Q ss_pred             CceeeeeccccCCc-CCCCccceeeEEEecCC--CCeeEecccCCCCC--ccccccccccCCHHhhccC-CCHHHHHHHH
Q 024455          135 PKAVAMDCEMVGGG-SNGTLDLCARVCLVDED--ENVIFHTYVQPQLP--VTNYRYEVTGLTEEDIKNA-MPLKEVKDKI  208 (267)
Q Consensus       135 ~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~~--~~~~~~~~v~P~~~--i~~~~~~~~GIt~~~l~~~-~~~~~v~~~~  208 (267)
                      ..++++|+||+|.+ ..++++++|.|.+.++.  ....+..+++|..+  +.+..+.+||||++++.+. .+..++.++|
T Consensus         6 ~~fvv~D~ETTGLdP~~DrIIeiAaVrvd~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e~e~~~~i   85 (476)
T PRK11779          6 PTFLWHDYETFGANPALDRPAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEFAARI   85 (476)
T ss_pred             CcEEEEEEECCCCCCCCCeeEEEEEEEEeCCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHH
Confidence            45799999999998 45678899999887653  22458899999853  4566899999999999664 5799999999


Q ss_pred             HHHHhcCCCCCcccccCCCceEEEecc-chhhhccccc
Q 024455          209 LEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (267)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~Dl~~l~~  245 (267)
                      .++++.            .|+++|||| +.||+.||+.
T Consensus        86 ~~~l~~------------~~~~lVGhNni~FD~eflr~  111 (476)
T PRK11779         86 HAEFSQ------------PGTCILGYNNIRFDDEVTRY  111 (476)
T ss_pred             HHHHhc------------CCCEEEEeCchhhcHHHHHH
Confidence            999942            368999997 7999999864

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.16  E-value=3.6e-12  Score=98.91  Aligned_cols=97  Identities=21%  Similarity=0.270  Sum_probs=74.2

Q ss_pred             CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhh
Q 024455           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKK  121 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~  121 (267)
                      .|.+|||.|.....|.+|+.    |   -...+..-|..|||.|...-.|++|+|+|+|.+||+   |+++|.+..+|..
T Consensus       119 tCrvCgK~F~lQRmlnrh~k----c---h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsles  191 (267)
T KOG3576|consen  119 TCRVCGKKFGLQRMLNRHLK----C---HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLES  191 (267)
T ss_pred             eeehhhhhhhHHHHHHHHhh----h---ccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHH
Confidence            89999999998888888872    2   111111227789999999999999999999999998   8999999999999


Q ss_pred             hcccccccc---ccCCCceeeeeccccCCc
Q 024455          122 ISGAIDEKR---TCRGPKAVAMDCEMVGGG  148 (267)
Q Consensus       122 H~~~~~~~r---~~~~~~~~~~dcE~~g~~  148 (267)
                      |....++..   .....+...+-||.||..
T Consensus       192 hl~kvhgv~~~yaykerr~kl~vcedcg~t  221 (267)
T KOG3576|consen  192 HLKKVHGVQHQYAYKERRAKLYVCEDCGYT  221 (267)
T ss_pred             HHHHHcCchHHHHHHHhhhheeeecccCCC
Confidence            987655432   223334456778999864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.13  E-value=3.4e-11  Score=111.54  Aligned_cols=119  Identities=23%  Similarity=0.345  Sum_probs=95.2

Q ss_pred             cCCCceeeeeccccCCc-------CC-------CCccceeeEEEecCC----CCeeEecccCCCCCccccccccccCCHH
Q 024455          132 CRGPKAVAMDCEMVGGG-------SN-------GTLDLCARVCLVDED----ENVIFHTYVQPQLPVTNYRYEVTGLTEE  193 (267)
Q Consensus       132 ~~~~~~~~~dcE~~g~~-------~~-------~~~~~i~~v~vvd~~----~~~~~~~~v~P~~~i~~~~~~~~GIt~~  193 (267)
                      ...+..+++|-|+....       .+       .....+||++++.+.    |....|.+|-.+..|.||.|+++||-+.
T Consensus       907 Pk~g~LVgiDAEFVtLq~Ee~Eir~DG~~stIkP~~msvARiScvRGeGp~eGiPFiDDYv~T~d~VvDYLTqySGI~PG  986 (1118)
T KOG1275|consen  907 PKSGDLVGIDAEFVTLQTEELEIRSDGKTSTIKPSRMSVARISCVRGEGPNEGIPFIDDYVSTDDKVVDYLTQYSGIKPG  986 (1118)
T ss_pred             CCCCceeeeehhheecchHHhccccCCceeEeccccceeEEEEEEcccCCCCCCccccceecchhHHHHHHHHhcCCCcc
Confidence            34456677777666432       11       122357999999886    4455788898889999999999999999


Q ss_pred             hhccCC------CHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCCCCceecccccccccc
Q 024455          194 DIKNAM------PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK  263 (267)
Q Consensus       194 ~l~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~~~~  263 (267)
                      ||+...      +++-+..+|+-++.             .|.++|||++++|+++|++..|+.+||||+.|+-+..
T Consensus       987 DLDp~~S~K~Lt~lK~~Y~Kl~~Li~-------------~GviFVGHGL~nDFrvINi~Vp~~QiiDTv~lf~~~s 1049 (1118)
T KOG1275|consen  987 DLDPTTSEKRLTTLKVLYLKLRLLIQ-------------RGVIFVGHGLQNDFRVINIHVPEEQIIDTVTLFRLGS 1049 (1118)
T ss_pred             ccCCccCcceehhHHHHHHHHHHHHH-------------cCcEEEcccccccceEEEEecChhhheeeeEEEeccc
Confidence            998653      57788888888884             8999999999999999999999999999999887654

>PHA02768 hypothetical protein; Provisional

Probab=98.93  E-value=3.9e-10  Score=69.65  Aligned_cols=43  Identities=19%  Similarity=0.453  Sum_probs=38.7

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLR   60 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~   60 (267)
                      -|+|+.||+.|.+.++|..||++  |+  ++ +|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC--CcccCCcccceecccceeE
Confidence            48999999999999999999999  88  45 9999999999887664

>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]

Probab=98.85  E-value=6.6e-10  Score=84.37  Aligned_cols=120  Identities=21%  Similarity=0.243  Sum_probs=85.8

Q ss_pred             CCceeeeeccccCCcCC-CCccceeeEEEecCCCCee---EecccCCCCCcccccccc-------ccCCHHhhccCCCHH
Q 024455          134 GPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVI---FHTYVQPQLPVTNYRYEV-------TGLTEEDIKNAMPLK  202 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~---~~~~v~P~~~i~~~~~~~-------~GIt~~~l~~~~~~~  202 (267)
                      ..+++.+||||+|..-. +++.+ .+..+.|++...+   ++..|+-+.++.+....|       +|+|..-+.+..+++
T Consensus        25 ~q~lVWiD~EMTGLdvekd~i~E-iacIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehhg~SGLt~kv~~S~~tl~  103 (208)
T KOG3242|consen   25 KQPLVWIDCEMTGLDVEKDRIIE-IACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHHGNSGLTEKVLASKITLA  103 (208)
T ss_pred             cCceEEEeeeccccccccceeEE-EEEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhccchhHHHHHHHhhccHH
Confidence            34679999999999844 44544 4555667765443   566676554444433333       579999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC------CCceeccccccccc
Q 024455          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDTAKYRPLM  262 (267)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~------~~~~~dt~~~~~~~  262 (267)
                      +|..++++||..    +++ +   +..+|.|+++..|..||..++|      .++|||.+.+..+-
T Consensus       104 ~aEnevl~yikk----~ip-~---~~~~laGNSV~~DrlFl~k~mPk~~~~lhyrivDVStIkeL~  161 (208)
T KOG3242|consen  104 DAENEVLEYIKK----HIP-K---GKCPLAGNSVYMDRLFLKKYMPKLIKHLHYRIVDVSTIKELA  161 (208)
T ss_pred             HHHHHHHHHHHH----hCC-C---CCCCccCcchhhHHHHHHHHhHHHHHhcceeeeeHHHHHHHH
Confidence            999999999942    222 2   4569999999999999986655      56788888665444

>PHA00733 hypothetical protein

Probab=98.84  E-value=2.8e-09  Score=79.41  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCCccccccCccccCChHHHHHH--HhHh-cCCCCCC-CcccchhhcCCHHHHHhhcC---CCCCCCcCCcccccccccc
Q 024455           11 STARHKCVACYKQFKRKDHLIEH--MKIS-YHSVHQP-KCAVCQKLSKSFESLREHLT---GPLSKAHCSGIFSDRGCNL   83 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H--~~~~-~H~~~~~-~C~~C~~~f~~~~~l~~H~~---~~~~C~~C~k~f~~~~C~~   83 (267)
                      ..|++.|.+|.+.|.....|..|  ++.+ .+.+.+| .|+.||+.|.+.++|..|+.   .+|            .|+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~------------~C~~  104 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK------------VCPV  104 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCc------------cCCC
Confidence            57789999999988887777666  2110 0233566 99999999999999999983   222            4778


Q ss_pred             cccccCChhhHHHHHHHhcC
Q 024455           84 CMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        84 C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |++.|.....|..|++..|+
T Consensus       105 CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcC
Confidence            88899999999999887664

>PHA02768 hypothetical protein; Provisional

Probab=98.70  E-value=8.4e-09  Score=63.79  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             cccccccccCChhhHHHHHHHhc-CCCCccccccCcchhhhhh
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACS-LSAPVPFEKTLSNAESQKK  121 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~-~~~~~~C~~~f~~~~~l~~  121 (267)
                      .|+.||+.|...++|..|+++|+ +.++..|++.|...+.|..
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHhcCCcccCCcccceecccceeEE
Confidence            48999999999999999999998 5555569998887776543

>PHA00733 hypothetical protein

Probab=98.54  E-value=9.9e-08  Score=71.11  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=48.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-CCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-TGPLSK   69 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-~~~~~C   69 (267)
                      ..+++||.|+.|++.|.+...|..|++.  |.  .+ .|+.|++.|.....|..|+ .+.-.|
T Consensus        68 ~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h~--~~~~C~~CgK~F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733         68 SKAVSPYVCPLCLMPFSSSVSLKQHIRY--TE--HSKVCPVCGKEFRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             cCCCCCccCCCCCCcCCCHHHHHHHHhc--CC--cCccCCCCCCccCCHHHHHHHHHHhcCcc
Confidence            3468899999999999999999999998  73  34 9999999999999999998 443334

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.46  E-value=2.7e-07  Score=84.15  Aligned_cols=95  Identities=18%  Similarity=0.417  Sum_probs=63.7

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccccc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLC   84 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C   84 (267)
                      -++.+.|+.|++.|. ...|..|+++  |.  .+ .|+ ||+.+ .+..|..|+     .+++.|            +.|
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~--~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C------------~fC  510 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKV--FH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITC------------RFC  510 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHh--cC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeC------------CCC
Confidence            456788999999885 6778999988  53  55 898 99755 668898887     344444            445


Q ss_pred             ccccC----------ChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcccc
Q 024455           85 MNIFD----------SPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAI  126 (267)
Q Consensus        85 ~~~F~----------~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~  126 (267)
                      ++.|.          ..+.|..|+.++ |.+++.   |++.+.. ..+..|+...
T Consensus       511 ~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~~~~  563 (567)
T PLN03086        511 GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVML-KEMDIHQIAV  563 (567)
T ss_pred             CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeee-hhHHHHHHHh
Confidence            55553          245788888886 777776   4444333 3455565433

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]

Probab=98.30  E-value=1.7e-07  Score=70.72  Aligned_cols=120  Identities=17%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             CCceeeeeccccCCcCCC-CccceeeEEEecCCCCeeEec---ccC-CC---CCcccccccc---ccCCHHhhccCCCHH
Q 024455          134 GPKAVAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHT---YVQ-PQ---LPVTNYRYEV---TGLTEEDIKNAMPLK  202 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~~-~~~~i~~v~vvd~~~~~~~~~---~v~-P~---~~i~~~~~~~---~GIt~~~l~~~~~~~  202 (267)
                      ..+.+.+||||+|..... ++++ .+..|.|.+.+++-+.   .|. |.   ....+|.++.   +|++....++..+.+
T Consensus         5 ~~nLiWIDlEMTGLd~~~drIIE-iA~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t~~   83 (184)
T COG1949           5 KNNLIWIDLEMTGLDPERDRIIE-IATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVTEA   83 (184)
T ss_pred             CCceEEEeeeeccCCcCcceEEE-EEEEEecCcccccccCceEEEeCCHHHHHHHHHHHHHccccccHHHHHHHhhccHH
Confidence            346789999999998554 4555 3444556655544322   222 21   2345666665   468888888889999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC------CCceeccccccccc
Q 024455          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDTAKYRPLM  262 (267)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~------~~~~~dt~~~~~~~  262 (267)
                      +|..++++||.+    |.+.    +-+++.|+++..|.+||-..+|      .++++|.+.++.+-
T Consensus        84 ~aE~~~l~flkk----wvp~----~~spicGNSI~qDRrFl~r~MP~Le~yfHYR~lDVSTlKELa  141 (184)
T COG1949          84 EAEAQTLDFLKK----WVPK----GVSPICGNSIAQDRRFLFRYMPKLEAYFHYRYLDVSTLKELA  141 (184)
T ss_pred             HHHHHHHHHHHH----hCCC----CCCCCccchhhHHHHHHHHHhhhHHHHhhhHhhhHHHHHHHH
Confidence            999999999942    4433    3359999999999999976555      45777877666554

>PHA00616 hypothetical protein

Probab=98.26  E-value=4.2e-07  Score=53.53  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHHHhcCCCCcccccc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~~  112 (267)
                      .|+.||+.|.++++|..|++.||+++++.|+.-
T Consensus         3 qC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          3 QCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             ccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            388899999999999999999999999987654

>PHA00616 hypothetical protein

Probab=98.23  E-value=6.1e-07  Score=52.81  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      ||+|+.||+.|..++.|.+|++.  |+++++ .|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~--~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS--VHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH--hcCCCccceeEE
Confidence            69999999999999999999999  888888 87754

>PHA00732 hypothetical protein

Probab=98.21  E-value=8.2e-07  Score=60.15  Aligned_cols=44  Identities=30%  Similarity=0.519  Sum_probs=35.6

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~   63 (267)
                      ||.|+.|++.|.+...|..|++.+ |.+.  .|+.||+.|.   +|..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-H~~~--~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-HTLT--KCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-cCCC--ccCCCCCEeC---Chhhhh
Confidence            688999999999999999999841 5532  7889998887   477777

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.21  E-value=3.2e-07  Score=79.07  Aligned_cols=87  Identities=21%  Similarity=0.339  Sum_probs=64.3

Q ss_pred             ccccccCccccCChHHHHHHH--hHhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCccc---------------
Q 024455           14 RHKCVACYKQFKRKDHLIEHM--KISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIF---------------   76 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~--~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f---------------   76 (267)
                      -|.|..|...|...-.|.+|.  +++ |.  .++|++|+|.|.-..||..|.....+-..-+++-               
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV-~v--EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~  343 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIV-HV--EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQ  343 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeE-Ee--eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhh
Confidence            488999999999999999997  442 22  2399999999999999999983222211111000               


Q ss_pred             --------cc---ccccccccccCChhhHHHHHHHhcC
Q 024455           77 --------SD---RGCNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        77 --------~~---~~C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                              ++   ..|.+|+|.|.+...|+.|+.+|+.
T Consensus       344 ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  344 EAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             hccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                    00   1299999999999999999999874

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.20  E-value=1e-06  Score=76.04  Aligned_cols=48  Identities=29%  Similarity=0.544  Sum_probs=41.8

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCC--------CCC--------------------------CcccchhhcCCHHHH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSV--------HQP--------------------------KCAVCQKLSKSFESL   59 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~--------~~~--------------------------~C~~C~~~f~~~~~l   59 (267)
                      .|+|+.|+|.|+...+|..|.|.  |..        ..|                          .|.+|+|.|.+...|
T Consensus       295 EYrCPEC~KVFsCPANLASHRRW--HKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRW--HKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             eecCCcccccccCchhhhhhhcc--cCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence            49999999999999999999999  731        111                          599999999999999


Q ss_pred             Hhhc
Q 024455           60 REHL   63 (267)
Q Consensus        60 ~~H~   63 (267)
                      +.|+
T Consensus       373 rKHq  376 (500)
T KOG3993|consen  373 RKHQ  376 (500)
T ss_pred             HHhH
Confidence            9996

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.20  E-value=5.5e-07  Score=47.48  Aligned_cols=25  Identities=36%  Similarity=0.707  Sum_probs=22.4

Q ss_pred             HHHHHHhHhcCCCCCC-CcccchhhcCC
Q 024455           29 HLIEHMKISYHSVHQP-KCAVCQKLSKS   55 (267)
Q Consensus        29 ~l~~H~~~~~H~~~~~-~C~~C~~~f~~   55 (267)
                      +|.+|+++  |++++| .|+.|++.|.+
T Consensus         1 ~l~~H~~~--H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT--HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH--HSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhh--cCCCCCCCCCCCcCeeCc
Confidence            58899999  999999 99999999864

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.16  E-value=4.5e-06  Score=76.29  Aligned_cols=116  Identities=12%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc--chhhcCCHHHHHhhcCCCCCCCcCCcccccc-----------
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHLTGPLSKAHCSGIFSDR-----------   79 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~-----------   79 (267)
                      .-.|+.|.+... ...|..|...  -. ... .|+.  ||..|. +..+..    ++.|+.|++.|...           
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~~--C~-r~~V~Cp~~~Cg~v~~-r~el~~----H~~C~~Cgk~f~~s~LekH~~~~Hk  477 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEAY--CS-RHNVVCPHDGCGIVLR-VEEAKN----HVHCEKCGQAFQQGEMEKHMKVFHE  477 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHhh--CC-CcceeCCcccccceee-cccccc----CccCCCCCCccchHHHHHHHHhcCC
Confidence            447999987654 4567788753  33 333 7874  888883 333333    46788888887532           


Q ss_pred             --cccccccccCChhhHHHHHHHhcCCCCcc---ccccCc----------chhhhhhhccccccccccCCCceeeeeccc
Q 024455           80 --GCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLS----------NAESQKKISGAIDEKRTCRGPKAVAMDCEM  144 (267)
Q Consensus        80 --~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~----------~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~  144 (267)
                        .|+ ||+.+ .+..|..|+++|.+++++.   |++.+.          ..+.|..|.....         ...+.|..
T Consensus       478 pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG---------~rt~~C~~  546 (567)
T PLN03086        478 PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICG---------SRTAPCDS  546 (567)
T ss_pred             CccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcC---------CcceEccc
Confidence              388 99755 6789999999999999998   555553          1346788874321         24578899


Q ss_pred             cCCcC
Q 024455          145 VGGGS  149 (267)
Q Consensus       145 ~g~~~  149 (267)
                      ||...
T Consensus       547 Cgk~V  551 (567)
T PLN03086        547 CGRSV  551 (567)
T ss_pred             cCCee
Confidence            98753

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=98.00  E-value=1.2e-05  Score=64.84  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=56.5

Q ss_pred             eeeeccccCCc-----CCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          138 VAMDCEMVGGG-----SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       138 ~~~dcE~~g~~-----~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      .++|.|++|..     ..+++.+|+.+...++.. ..+.....+.....      .||+..++...++..+++..+++++
T Consensus         2 ~~~DIEt~~~~~~p~~~~d~Ii~I~~~~~~~g~~-~~~~~~~~~~~~~~------~~i~~~~v~~~~~E~~lL~~f~~~i   74 (199)
T cd05160           2 LSFDIETTPPVGGPEPDRDPIICITYADSFDGVK-VVFLLKTSTVGDDI------EFIDGIEVEYFADEKELLKRFFDII   74 (199)
T ss_pred             ccEEEeecCCCCCcCCCCCCEEEEEEEEeeCCce-eeEEEeecccCCcC------CCCCCceEEEeCCHHHHHHHHHHHH
Confidence            57899999862     234444444433322222 12222222211111      1888889999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      .+      .+|     .+|||||+ .||+.+|.
T Consensus        75 ~~------~dp-----diivg~N~~~FD~~~L~   96 (199)
T cd05160          75 RE------YDP-----DILTGYNIDDFDLPYLL   96 (199)
T ss_pred             Hh------cCC-----CEEEEeccCCCcHHHHH
Confidence            42      111     39999999 89999994

The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.81  E-value=1e-05  Score=41.18  Aligned_cols=22  Identities=41%  Similarity=0.689  Sum_probs=20.4

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      |.|+.|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.76  E-value=1.4e-05  Score=42.06  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=17.4

Q ss_pred             hHHHHHHHhcCCCCcc---ccccCc
Q 024455           93 SLIKHKEACSLSAPVP---FEKTLS  114 (267)
Q Consensus        93 ~L~~H~~~h~~~~~~~---C~~~f~  114 (267)
                      +|.+|+++|++++||+   |++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            5889999999999997   555553

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.75  E-value=1.7e-05  Score=40.37  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=19.0

Q ss_pred             ccccccccCChhhHHHHHHHh
Q 024455           81 CNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      |+.|++.|.+++.|..|++.|
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    3 CPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             ETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHhHC
Confidence            889999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.43  E-value=0.00011  Score=37.40  Aligned_cols=22  Identities=36%  Similarity=0.765  Sum_probs=18.7

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      |.|+.|++.|.+...|..|+++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6899999999999999999987

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.40  E-value=0.00023  Score=44.64  Aligned_cols=46  Identities=26%  Similarity=0.481  Sum_probs=29.1

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCC-C-CcccchhhcCCHHHHHhhc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ-P-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~-~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      .|.|+.|++ ..+...|..|.... |..+. . .|++|...+.  .+|..|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~-H~~~~~~v~CPiC~~~~~--~~l~~Hl   49 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDE-HRSESKNVVCPICSSRVT--DNLIRHL   49 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhH-CcCCCCCccCCCchhhhh--hHHHHHH
Confidence            478888888 45567788887663 66543 2 6777765433  2555554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.36  E-value=0.00012  Score=37.31  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=18.1

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |+.|++.|.+...|+.|+++|+
T Consensus         3 C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    3 CPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             -SSTS-EESSHHHHHHHHHHHS
T ss_pred             CcCCCCcCCcHHHHHHHHHhhC
Confidence            8889999999999999998875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.36  E-value=0.00013  Score=38.68  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ||+|+.|++.|.+...|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            68999999999999999999988

>PHA00732 hypothetical protein

Probab=97.31  E-value=0.00017  Score=48.81  Aligned_cols=19  Identities=26%  Similarity=0.662  Sum_probs=10.9

Q ss_pred             CcccchhhcCCHHHHHhhc
Q 024455           45 KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~   63 (267)
                      .|..||+.|.+.++|+.|+
T Consensus         3 ~C~~Cgk~F~s~s~Lk~H~   21 (79)
T PHA00732          3 KCPICGFTTVTLFALKQHA   21 (79)
T ss_pred             cCCCCCCccCCHHHHHHHh
Confidence            4555555555555555555

>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair]

Probab=97.27  E-value=0.00025  Score=57.77  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             eeeeccccCC-----cCCCCccceeeEEEecCC---CCeeEecccCCCC--CccccccccccCCHHhhccCCCHHHHHHH
Q 024455          138 VAMDCEMVGG-----GSNGTLDLCARVCLVDED---ENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (267)
Q Consensus       138 ~~~dcE~~g~-----~~~~~~~~i~~v~vvd~~---~~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~~  207 (267)
                      .++|.|.+-.     .+..+++++..|.+.+-+   ....|+.||+|..  .+.++.+.+|||..+.++.|++|++|+++
T Consensus        59 liiDFEaTC~e~~~~~~~~EIIEfP~V~l~~~~~~~Ie~eF~qYVrP~~np~LS~fC~~lTgI~Q~tVD~a~~f~~vl~~  138 (280)
T KOG0542|consen   59 LILDFEATCEEGNKPHYVQEIIEFPAVLLDNTETSIIEDEFHQYVRPVENPRLSDFCTSLTGIQQETVDEAPTFPQVLSE  138 (280)
T ss_pred             EEEeeeeeccccCCCCcchheeecceeEeeccchhhHHHHHHhhcCcccCchHHHHHHHhhCchHhhhccCCCHHHHHHH
Confidence            5677766532     355677777777555442   2236999999983  58999999999999999999999999999


Q ss_pred             HHHHHhc
Q 024455          208 ILEILNN  214 (267)
Q Consensus       208 ~~~~~~~  214 (267)
                      +..+|.+
T Consensus       139 f~~Wlr~  145 (280)
T KOG0542|consen  139 FDSWLRK  145 (280)
T ss_pred             HHHHHHH
Confidence            9999964

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

Probab=97.06  E-value=0.001  Score=47.06  Aligned_cols=30  Identities=33%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             eEEEeccchhhhccccccCC---------CCceeccccc
Q 024455          229 RLLVGHGLEHDLDSLRMNYP---------DHMLRDTAKY  258 (267)
Q Consensus       229 ~~lvgh~~~~Dl~~l~~~~~---------~~~~~dt~~~  258 (267)
                      .++||||+.||+.||+....         ...++||..+
T Consensus        45 ~v~V~hn~~fD~~fL~~~~~~~~~~~p~~~~~~lDT~~l   83 (96)
T cd06125          45 AILVGHNGSFDLPFLNNRCAELGLKYPLLAGSWIDTIKL   83 (96)
T ss_pred             CEEEEeCcHHhHHHHHHHHHHcCCCCCCcCCcEEEehHH
Confidence            69999999999999964321         2356777543

The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.98  E-value=0.00056  Score=41.28  Aligned_cols=26  Identities=23%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      |++|+..+.+..+|++|+..+|+.||
T Consensus        27 CP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   27 CPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCcchhhccchhhHHHHHHHHhcccC
Confidence            88888888889999999988888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.85  E-value=0.00062  Score=48.13  Aligned_cols=73  Identities=27%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             ccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHH
Q 024455           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (267)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~   95 (267)
                      +|..|+..|.....|..|+... |.-..+    ....+.....+..+....        ......|..|++.|.+...|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~----~~~~l~~~~~~~~~~~~~--------~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK-HGFDIP----DQKYLVDPNRLLNYLRKK--------VKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Cccccccccccccccccccccc-cccccc----cccccccccccccccccc--------cCCCCCCCccCCCCcCHHHHH
Confidence            5888999999999999998763 443222    111111222222222100        000124888999999999999


Q ss_pred             HHHHHh
Q 024455           96 KHKEAC  101 (267)
Q Consensus        96 ~H~~~h  101 (267)
                      .|++.+
T Consensus        68 ~Hm~~~   73 (100)
T PF12756_consen   68 EHMRSK   73 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHcCc
Confidence            999975

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.85  E-value=0.00038  Score=58.33  Aligned_cols=29  Identities=31%  Similarity=0.488  Sum_probs=23.8

Q ss_pred             CCCccccc--cCccccCChHHHHHHHhHhcCC
Q 024455           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      ++|||+|+  .|.|+|+....|+-|+.- .|.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lh-GH~  376 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH-GHQ  376 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhc-ccc
Confidence            46999995  599999999999999864 353

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.81  E-value=0.00058  Score=36.04  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.2

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |..|++.|.+...|..|++.|.
T Consensus         4 C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    4 CDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             ETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCccCCccCChhHHHHHhHHhc
Confidence            7888999999999999998775

>smart00355 ZnF_C2H2 zinc finger

Probab=96.81  E-value=0.0012  Score=34.04  Aligned_cols=24  Identities=46%  Similarity=0.789  Sum_probs=21.4

Q ss_pred             cccccCccccCChHHHHHHHhHhcCC
Q 024455           15 HKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |.|+.|++.|.....|..|++.  |.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~--H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT--HX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH--hc
Confidence            6799999999999999999987  65

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.70  E-value=0.0022  Score=40.14  Aligned_cols=51  Identities=27%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcC
Q 024455           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      .|+.|++ ..+...|..|....+.-+  ++   ...|++|...+.  .+|..|+..+++
T Consensus         4 ~CP~C~~-~~~~~~L~~H~~~~H~~~--~~---~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    4 TCPYCGK-GFSESSLVEHCEDEHRSE--SK---NVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CCCCCCC-ccCHHHHHHHHHhHCcCC--CC---CccCCCchhhhh--hHHHHHHHHhcC
Confidence            7999999 456788999982111100  00   112666766544  499999987763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.64  E-value=0.0016  Score=33.50  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |+.|++.|...+.|..|++.|.
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        3 CPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCcchhCCHHHHHHHHHHhc
Confidence            7889999999999999998774

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.55  E-value=0.0023  Score=38.65  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=16.4

Q ss_pred             CCCCccccccCccccCChHHHHHHHhH
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ..+.|..|++|+..+.+..+|++|+.+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHH
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHH
Confidence            356677788888878888888888766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.30  E-value=0.002  Score=33.24  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=19.7

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999876

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides

Probab=96.16  E-value=0.022  Score=44.42  Aligned_cols=85  Identities=22%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             ceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      ..+++|+|+.+.........++.+.+....+..+++..-....    .                    +.+.|.+++.+ 
T Consensus        21 ~~~a~D~E~~~~~~~~~~~~~~~iq~~~~~~~~i~~~~~~~~~----~--------------------~~~~l~~ll~~-   75 (176)
T PF01612_consen   21 KVLAFDTETTGLDPYSYNPKIALIQLATGEGCYIIDPIDLGDN----W--------------------ILDALKELLED-   75 (176)
T ss_dssp             SEEEEEEEEETSTSTTSSEEEEEEEEEESCEEEEECGTTSTTT----T--------------------HHHHHHHHHTT-
T ss_pred             CeEEEEEEECCCCccccCCeEEEEEEecCCCceeeeecccccc----c--------------------hHHHHHHHHhC-
Confidence            4799999999976533343445555554422222221111100    0                    67788888854 


Q ss_pred             CCCCcccccCCCceEEEeccchhhhccccc--cCCCCceeccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRM--NYPDHMLRDTA  256 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~--~~~~~~~~dt~  256 (267)
                                 .+.+.||||+.||+.+|.-  ..+-..++||.
T Consensus        76 -----------~~i~kv~~n~~~D~~~L~~~~~i~~~~~~D~~  107 (176)
T PF01612_consen   76 -----------PNIIKVGHNAKFDLKWLYRSFGIDLKNVFDTM  107 (176)
T ss_dssp             -----------TTSEEEESSHHHHHHHHHHHHTS--SSEEEHH
T ss_pred             -----------CCccEEEEEEechHHHHHHHhccccCCccchh
Confidence                       5679999999999999965  22223667884

This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.78  E-value=0.0041  Score=43.86  Aligned_cols=20  Identities=40%  Similarity=0.753  Sum_probs=17.8

Q ss_pred             CCcccchhhcCCHHHHHhhc
Q 024455           44 PKCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~   63 (267)
                      ..|..|++.|.+...|..|+
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm   70 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHM   70 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHH
Confidence            38999999999999999999

>PRK04860 hypothetical protein; Provisional

Probab=95.67  E-value=0.0053  Score=47.51  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=32.5

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCH
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF   56 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~   56 (267)
                      -+|.|. |++   ....+.+|.++  |+++++ .|..|++.|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri--~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRV--VRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHH--hcCCccEECCCCCceeEEe
Confidence            369998 987   67889999999  999988 999999988653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.38  E-value=0.0083  Score=30.83  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=17.2

Q ss_pred             ccccccccCChhhHHHHHHHh
Q 024455           81 CNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      |..|++.|.+...|+.|++.+
T Consensus         3 C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             ETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCcCCHHHHHHHHCcC
Confidence            788888888888888888654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.21  E-value=0.0059  Score=32.15  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=17.3

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      |.|..|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888877764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.98  E-value=0.017  Score=29.37  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=16.9

Q ss_pred             ccccccccCChhhHHHHHHHhcC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |+.|+.... .+.|..|++.|++
T Consensus         3 C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    3 CPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             -SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCcCC-HHHHHHHHHhhCc
Confidence            788888887 8899999998764

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.92  E-value=0.02  Score=29.60  Aligned_cols=19  Identities=37%  Similarity=0.833  Sum_probs=13.4

Q ss_pred             ccccccccCChhhHHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKEA  100 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~  100 (267)
                      |+.||+.| ....|..|+.+
T Consensus         5 C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    5 CPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCCCCCEE-CHHHHHHHHHh
Confidence            67777777 56677777654

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases

Probab=94.75  E-value=0.11  Score=41.63  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             ceeeeeccccCCc-C-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          136 KAVAMDCEMVGGG-S-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       136 ~~~~~dcE~~g~~-~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ++.++|.|+.+.. + ......+..+++....+..++..  ++             +....+..-.+-.+++..+++++.
T Consensus         4 ~i~~fDIEt~~~~g~p~~~~d~Ii~Is~~~~~~~~~~~~--~~-------------~~~~~v~~~~~E~~lL~~F~~~i~   68 (195)
T cd05780           4 KILSFDIEVLNHEGEPNPEKDPIIMISFADEGGNKVITW--KK-------------FDLPFVEVVKTEKEMIKRFIEIVK   68 (195)
T ss_pred             eEEEEEEEecCCCCCCCCCCCcEEEEEEecCCCceEEEe--cC-------------CCCCeEEEeCCHHHHHHHHHHHHH
Confidence            4678999998432 1 23334455555555444322211  11             001134445677899999999994


Q ss_pred             cCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      +      .+     -.+|||||. .||+.+|.
T Consensus        69 ~------~d-----pdiivgyN~~~FD~pyL~   89 (195)
T cd05780          69 E------KD-----PDVIYTYNGDNFDFPYLK   89 (195)
T ss_pred             H------cC-----CCEEEecCCCCCcHHHHH
Confidence            2      11     149999998 58999994

The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]

Probab=94.54  E-value=0.16  Score=44.30  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=70.2

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEe-cCC-CCeeEecccCCCCCc--cccccccccCCHHhhc-cCCCHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLV-DED-ENVIFHTYVQPQLPV--TNYRYEVTGLTEEDIK-NAMPLKEVKDK  207 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vv-d~~-~~~~~~~~v~P~~~i--~~~~~~~~GIt~~~l~-~~~~~~~v~~~  207 (267)
                      ...+..+|-|+-|... .++..+.|.|+-- +.+ ..+-..-+++|....  .+..+=|||||+.... ++.+..+..+.
T Consensus         8 ~~tF~~yDYETfG~~Pa~DRPaQFAgiRTD~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~G~~E~~F~~~   87 (475)
T COG2925           8 QPTFLFYDYETFGVHPALDRPAQFAGIRTDIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAAFAAR   87 (475)
T ss_pred             CCcEEEEehhhcCCCcccccchhhheeeccccccccCCCeEEEecCccccCCCCCceeeecCCHHHHHhcCCChHHHHHH
Confidence            3457889999999873 3556666666653 222 122244567776432  2346889999999985 56899999999


Q ss_pred             HHHHHhcCCCCCcccccCCCceEEEec-cchhhhccccc
Q 024455          208 ILEILNNGESTGRLMLDDGKARLLVGH-GLEHDLDSLRM  245 (267)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh-~~~~Dl~~l~~  245 (267)
                      |...+..            .++.+||+ |+.||=.|-+.
T Consensus        88 I~~~ls~------------P~Tcv~GYNniRFDDEvtRy  114 (475)
T COG2925          88 IHAELTQ------------PNTCVLGYNNIRFDDEVTRY  114 (475)
T ss_pred             HHHHhCC------------CCeeeecccccccchHHHHH
Confidence            9998864            67899995 57999888764

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=94.49  E-value=0.12  Score=41.91  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       198 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      ..+.++++..+.+++.+      .+|     .||||||+ .||+.+|.
T Consensus        55 ~~~E~~lL~~f~~~i~~------~dP-----dii~g~N~~~FD~pyl~   91 (207)
T cd05785          55 DAAEKELLEELVAIIRE------RDP-----DVIEGHNIFRFDLPYLR   91 (207)
T ss_pred             CCCHHHHHHHHHHHHHH------hCC-----CEEeccCCcccCHHHHH
Confidence            57899999999999952      111     49999999 89999983

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.41  E-value=0.022  Score=28.96  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=17.1

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      |+|+.|+.... +..|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            78999998887 8899999987

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=94.40  E-value=0.016  Score=48.86  Aligned_cols=57  Identities=30%  Similarity=0.574  Sum_probs=38.2

Q ss_pred             CCC-Cccc--chhhcCCHHHHHhhc-CC-------CCCCCcCCcccc----cccccccccccCChhhHHHHH
Q 024455           42 HQP-KCAV--CQKLSKSFESLREHL-TG-------PLSKAHCSGIFS----DRGCNLCMNIFDSPSSLIKHK   98 (267)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~-~~-------~~~C~~C~k~f~----~~~C~~C~~~F~~~~~L~~H~   98 (267)
                      ++| +|++  |.|.+.....|+.|+ .|       +-+-++--..|+    -..|+.|+|.|.....|+-|.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            477 8887  999999998899888 11       222233333342    224888888888888887774

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.30  E-value=0.01  Score=31.25  Aligned_cols=19  Identities=32%  Similarity=0.712  Sum_probs=13.4

Q ss_pred             ccccccccCChhhHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~   99 (267)
                      |..|++.|.+...|..|++
T Consensus         4 C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    4 CDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             BTTTTBBBSSHHHHHCCTT
T ss_pred             cccCCCCcCCHHHHHHHHc
Confidence            6677777777777777764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins

Probab=94.15  E-value=0.17  Score=40.50  Aligned_cols=45  Identities=20%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCCC--------Cceecccccc
Q 024455          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD--------HMLRDTAKYR  259 (267)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~--------~~~~dt~~~~  259 (267)
                      .+.+.|.+++.+            .+.+-|||++.+|+.+|.-.++.        ..++||+.+.
T Consensus        69 ~~~~~L~~ll~d------------~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a  121 (193)
T cd06146          69 DWDRLLKRLFED------------PDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLA  121 (193)
T ss_pred             HHHHHHHHHhCC------------CCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHH
Confidence            344567788843            44577999999999999754432        4788997543

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.15  E-value=0.043  Score=28.28  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=16.2

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .+|+.||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4788999998 56778888754

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases

Probab=94.11  E-value=0.041  Score=43.71  Aligned_cols=51  Identities=24%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC--CCCceecccccc
Q 024455          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--PDHMLRDTAKYR  259 (267)
Q Consensus       197 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~--~~~~~~dt~~~~  259 (267)
                      ++++++++.+.|.+++.+            .+..+||||+.||+.+|+...  ....++||..+.
T Consensus        48 ~~~~~~~~~~~l~~~l~~------------~~~~~v~hn~k~d~~~l~~~gi~~~~~~~Dt~l~a  100 (193)
T cd06139          48 EQLPREEVLAALKPLLED------------PSIKKVGQNLKFDLHVLANHGIELRGPAFDTMLAS  100 (193)
T ss_pred             cCCCHHHHHHHHHHHHhC------------CCCcEEeeccHHHHHHHHHCCCCCCCCcccHHHHH
Confidence            456788999999999943            335899999999999996432  123568887543

Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.11  Score=48.94  Aligned_cols=74  Identities=24%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             ccCChHHHHHHHhHhcCCCCCC--------CcccchhhcCCHHHHHhhc-CCCCCCCcCCccccc-ccccccccccCChh
Q 024455           23 QFKRKDHLIEHMKISYHSVHQP--------KCAVCQKLSKSFESLREHL-TGPLSKAHCSGIFSD-RGCNLCMNIFDSPS   92 (267)
Q Consensus        23 ~f~~~~~l~~H~~~~~H~~~~~--------~C~~C~~~f~~~~~l~~H~-~~~~~C~~C~k~f~~-~~C~~C~~~F~~~~   92 (267)
                      .|.....|+.|+... |..-.-        .+..+.+.| +...|+.|+ .+..    +++.|.. .-|..|...|-...
T Consensus       123 ~~~s~~~Lk~H~~~~-H~~~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~~gd~----d~~s~rGhp~C~~C~~~fld~~  196 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQ-HKLHLCSLCLQNLKIFINERKLY-TRAELNLHLMFGDP----DDESCRGHPLCKFCHERFLDDD  196 (669)
T ss_pred             chhHHHHHHHHHHHh-hhhhccccccccceeeeeeeehe-hHHHHHHHHhcCCC----ccccccCCccchhhhhhhccHH
Confidence            344778899998541 543221        222233333 456677777 2211    3333333 34666666666666


Q ss_pred             hHHHHHHHhc
Q 024455           93 SLIKHKEACS  102 (267)
Q Consensus        93 ~L~~H~~~h~  102 (267)
                      .|.+|++.++
T Consensus       197 el~rH~~~~h  206 (669)
T KOG2231|consen  197 ELYRHLRFDH  206 (669)
T ss_pred             HHHHhhccce
Confidence            6666666543

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.32  E-value=0.048  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=15.6

Q ss_pred             CCCcCCcccccc--cccccccccC
Q 024455           68 SKAHCSGIFSDR--GCNLCMNIFD   89 (267)
Q Consensus        68 ~C~~C~k~f~~~--~C~~C~~~F~   89 (267)
                      .|+.|++.....  .|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCCc
Confidence            477777776543  4888888875

Several members are annotated as putative helicases.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.27  E-value=0.066  Score=29.79  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +|.|+.|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999999865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only]

Probab=93.12  E-value=0.0095  Score=45.76  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             eeeecccc-----CCcCCCCccceeeE--EEecCCCCeeEecccCCCC--CccccccccccCCHHhhccCCCHHHHHHHH
Q 024455          138 VAMDCEMV-----GGGSNGTLDLCARV--CLVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (267)
Q Consensus       138 ~~~dcE~~-----g~~~~~~~~~i~~v--~vvd~~~~~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~  208 (267)
                      ..+|.|.+     +....-.+++|.+.  ..+|......|+++|+|..  .++++...++||+...++.||-|..|.+++
T Consensus         7 LIID~EaT~~eG~~~~~e~eiiei~a~lv~~id~~vvd~F~syVRP~~~P~Lt~~Ckslt~I~Q~~VD~apifs~v~E~f   86 (210)
T COG5018           7 LIIDFEATMPEGKYSPQEFEIIEIEAGLVKSIDDEVVDTFSSYVRPKKFPKLTKRCKSLTKITQKQVDEAPIFSMVFEDF   86 (210)
T ss_pred             EEEEeeeeccCCCCCchhceeeeehhhHHHHhhHHHHHHHHHhcCcccCchHHHHHHHhhhhhhhhccccchHHHHHHHH
Confidence            45566554     22233344443322  2234445566899999983  488889999999999999999999999999


Q ss_pred             HHHHhc
Q 024455          209 LEILNN  214 (267)
Q Consensus       209 ~~~~~~  214 (267)
                      ..+|..
T Consensus        87 ~r~L~~   92 (210)
T COG5018          87 IRKLNE   92 (210)
T ss_pred             HHHHHh
Confidence            999953

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases

Probab=93.01  E-value=0.5  Score=37.70  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=46.9

Q ss_pred             ceeeeeccccCCc-C-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          136 KAVAMDCEMVGGG-S-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       136 ~~~~~dcE~~g~~-~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      +..++|.|+.+.. + ......|..|++...++...+-.                       .+..+-++++..+.+++.
T Consensus         4 ~~l~fDIEt~~~~gfp~~~~d~Ii~Is~~~~~g~~~~~~-----------------------~~~~~E~~lL~~F~~~i~   60 (188)
T cd05781           4 KTLAFDIEVYSKYGTPNPRRDPIIVISLATSNGDVEFIL-----------------------AEGLDDRKIIREFVKYVK   60 (188)
T ss_pred             eEEEEEEEecCCCCCCCCCCCCEEEEEEEeCCCCEEEEE-----------------------ecCCCHHHHHHHHHHHHH
Confidence            4578999997432 1 23334455555554433311100                       124788999999999995


Q ss_pred             cCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      .      .+|     .+|+|+|. .||+.+|.
T Consensus        61 ~------~dP-----d~i~gyN~~~FDlpyl~   81 (188)
T cd05781          61 E------YDP-----DIIVGYNSNAFDWPYLV   81 (188)
T ss_pred             H------cCC-----CEEEecCCCcCcHHHHH
Confidence            2      111     48999997 59999984

The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.76  E-value=0.037  Score=49.48  Aligned_cols=112  Identities=24%  Similarity=0.342  Sum_probs=80.2

Q ss_pred             CccccccCccccCChHHHHHHHh--HhcCCCC--CC-Ccc--cchhhcCCHHHHHhhc-----CCCCCC--CcCCccccc
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMK--ISYHSVH--QP-KCA--VCQKLSKSFESLREHL-----TGPLSK--AHCSGIFSD   78 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~--~~~H~~~--~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C--~~C~k~f~~   78 (267)
                      .++.|..|...|.....|..|.+  .  |+++  ++ .|+  .|++.|.+...+..|.     ..++.+  ..|.+.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~--h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVN--HSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSP  365 (467)
T ss_pred             cCCCCccccCCccccccccccccccc--cccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccc
Confidence            57999999999999999999999  8  9999  88 999  7999999999999997     122332  333333332


Q ss_pred             cc-----------------------ccccccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhcccc
Q 024455           79 RG-----------------------CNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAI  126 (267)
Q Consensus        79 ~~-----------------------C~~C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~~~~  126 (267)
                      ..                       =..|-..+.....+..|...|-...++.     |...+.....+..|.+.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         366 LLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             ccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccc
Confidence            21                       2346667777777777777776544332     666777777777776544

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases

Probab=92.47  E-value=0.45  Score=38.18  Aligned_cols=38  Identities=13%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       196 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      .--.+-.+++..+.+++.+      .+|     .||+|||+ .||+.+|.
T Consensus        46 ~~~~~E~~lL~~f~~~i~~------~dP-----Dvi~g~N~~~FD~~yl~   84 (193)
T cd05784          46 EWFADEKSLLLALIAWFAQ------YDP-----DIIIGWNVINFDLRLLQ   84 (193)
T ss_pred             EEECCHHHHHHHHHHHHHh------hCC-----CEEEECCCcCcCHHHHH
Confidence            3346888999999999943      111     39999998 58999993

The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included

Probab=92.20  E-value=0.36  Score=41.73  Aligned_cols=91  Identities=14%  Similarity=0.134  Sum_probs=53.7

Q ss_pred             CCCceeeeeccccCCcC---CCCccceeeEEEe-cC-----CCCeeEecccCCCCCccccccccccCCHHhhccCCCHHH
Q 024455          133 RGPKAVAMDCEMVGGGS---NGTLDLCARVCLV-DE-----DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKE  203 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~---~~~~~~i~~v~vv-d~-----~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~  203 (267)
                      ..-.+.++|.|+.....   .....++..|+++ ..     ......-.+... ..+.+         ...+....+..+
T Consensus       155 p~l~i~s~DIe~~~~~~~~P~~~~d~I~~Is~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~v~~~~~E~~  224 (325)
T PF03104_consen  155 PPLRILSFDIETYSNDGKFPDPEKDEIIMISYVVYRNGSSEPYRRKVFTLGSC-DSIED---------NVEVIYFDSEKE  224 (325)
T ss_dssp             GGSEEEEEEEEECSSSSSS-TTTTSEEEEEEEEEEETTEEETTEEEEEECSCS-CCTTC---------TTEEEEESSHHH
T ss_pred             cccceeEEEEEEccccCCCCCCCCCeEEEEEEEEEeccccCCCceEEEEecCC-CCCCC---------CcEEEEECCHHH
Confidence            45567899999987652   3344555566642 11     122222222222 11111         334444578899


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCCceEEEeccch-hhhcccc
Q 024455          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR  244 (267)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~-~Dl~~l~  244 (267)
                      ++..++++|.      ..+|     .||+|||+. |||.+|.
T Consensus       225 lL~~f~~~i~------~~dP-----Dii~GyN~~~fD~~yl~  255 (325)
T PF03104_consen  225 LLEAFLDIIQ------EYDP-----DIITGYNIDGFDLPYLI  255 (325)
T ss_dssp             HHHHHHHHHH------HHS------SEEEESSTTTTHHHHHH
T ss_pred             HHHHHHHHHH------hcCC-----cEEEEecccCCCHHHHH
Confidence            9999999994      2333     299999995 8999993

; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=92.09  E-value=0.052  Score=44.00  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             CCCcccchhhcCCHHHHHhhc-CCCCCCCcCC
Q 024455           43 QPKCAVCQKLSKSFESLREHL-TGPLSKAHCS   73 (267)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~-~~~~~C~~C~   73 (267)
                      ++-|.+|++.|....-|.+|+ .+.|+|-+|-
T Consensus        10 kpwcwycnrefddekiliqhqkakhfkchich   41 (341)
T KOG2893|consen   10 KPWCWYCNREFDDEKILIQHQKAKHFKCHICH   41 (341)
T ss_pred             Cceeeecccccchhhhhhhhhhhccceeeeeh
Confidence            447777777777777777777 5666654443

>PRK05755 DNA polymerase I; Provisional

Probab=90.71  E-value=0.5  Score=46.93  Aligned_cols=45  Identities=27%  Similarity=0.182  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC--CCceecccccc
Q 024455          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP--DHMLRDTAKYR  259 (267)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~--~~~~~dt~~~~  259 (267)
                      ++++.|.+++.+            ...++||||+.||+.+|.....  ...++||-+..
T Consensus       357 ~~l~~l~~~L~d------------~~v~kV~HNakfDl~~L~~~gi~~~~~~~DT~iAa  403 (880)
T PRK05755        357 EVLAALKPLLED------------PAIKKVGQNLKYDLHVLARYGIELRGIAFDTMLAS  403 (880)
T ss_pred             HHHHHHHHHHhC------------CCCcEEEeccHhHHHHHHhCCCCcCCCcccHHHHH
Confidence            678889999953            3456899999999999963211  23578887543

>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins

Probab=90.45  E-value=0.68  Score=36.01  Aligned_cols=45  Identities=18%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             HHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC--CCceeccccccccc
Q 024455          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP--DHMLRDTAKYRPLM  262 (267)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~--~~~~~dt~~~~~~~  262 (267)
                      +.|.+++.+            .+.+.|||++.+|+.+|...++  -..++||.....+.
T Consensus        63 ~~l~~ll~~------------~~i~kv~~~~k~D~~~L~~~~g~~~~~~~Dl~~aa~ll  109 (170)
T cd06141          63 PSLKQLLED------------PSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRV  109 (170)
T ss_pred             HHHHHHhcC------------CCeeEEEeeeHHHHHHHHhHcCCCCCCeeeHHHHHHHh
Confidence            467778843            4567899999999999963222  12458888655443

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase

Probab=90.33  E-value=1.2  Score=36.09  Aligned_cols=36  Identities=11%  Similarity=0.077  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       198 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      -.+-.+++.++.+++.+      .+|     .+|+|+|. .||+.+|.
T Consensus        70 ~~~E~~lL~~f~~~i~~------~~P-----d~i~gyN~~~FD~pyl~  106 (204)
T cd05779          70 EPDEKALLQRFFEHIRE------VKP-----HIIVTYNGDFFDWPFVE  106 (204)
T ss_pred             CCCHHHHHHHHHHHHHH------hCC-----CEEEecCccccCHHHHH
Confidence            46889999999999942      111     39999997 69999994

The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases

Probab=90.28  E-value=2.1  Score=34.60  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       197 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      .-.+-++++..+.+++.+            - .+|||+|. .||+.+|.
T Consensus        69 ~~~~E~~lL~~F~~~i~~------------~-~~iig~N~~~FDlpyl~  104 (204)
T cd05783          69 FFDSEKELIREAFKIISE------------Y-PIVLTFNGDNFDLPYLY  104 (204)
T ss_pred             ecCCHHHHHHHHHHHHhc------------C-CEEEEeCCCCcCHHHHH
Confidence            346889999999999953            2 48999997 69999984

The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.48  E-value=0.27  Score=39.07  Aligned_cols=98  Identities=20%  Similarity=0.336  Sum_probs=64.9

Q ss_pred             CCCCCCCCCCCCCcccccc--CccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhcC-------------C
Q 024455            1 MDTEAELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLT-------------G   65 (267)
Q Consensus         1 ~~~~~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~-------------~   65 (267)
                      ||.-+++-+-..+.+.|.+  |.+.|..-.....|..+. |+.   .|..|.+.|.+..-|..|+.             |
T Consensus        66 ~d~~d~~~~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~-h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG  141 (253)
T KOG4173|consen   66 MDVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTL-HGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERG  141 (253)
T ss_pred             eeccccccccccccccccccchHHHHhhhhhHHHhhhhc-ccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcC
Confidence            3444444444566788855  667777777676776441 333   79999999999999999981             1


Q ss_pred             --CCCCCcCCcccccccccccccccCChhhHHHHH-HHhcCCCCcccccc
Q 024455           66 --PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHK-EACSLSAPVPFEKT  112 (267)
Q Consensus        66 --~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~-~~h~~~~~~~C~~~  112 (267)
                        -|.|          --+.|+..|.....-..|+ ++|.-...|...+.
T Consensus       142 ~dMy~C----------lvEgCt~KFkT~r~RkdH~I~~Hk~Pa~frFdk~  181 (253)
T KOG4173|consen  142 QDMYQC----------LVEGCTEKFKTSRDRKDHMIRMHKYPADFRFDKP  181 (253)
T ss_pred             ccHHHH----------HHHhhhhhhhhhhhhhhHHHHhccCCcceeecCc
Confidence              1334          1356888999888888886 46644444444444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.29  E-value=0.17  Score=31.24  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhH
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +-||-.+.|+.|+..|....++.+|...
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            4578888899999999888888888755

>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase

Probab=89.02  E-value=2  Score=35.38  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       196 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      ..-.+..+++..+.+++..      .+|     .||+|||+ .|||.+|.
T Consensus        66 ~~~~~E~eLL~~f~~~i~~------~DP-----Dii~GyN~~~FDl~yL~  104 (230)
T cd05777          66 FSFETEEELLLAWRDFVQE------VDP-----DIITGYNICNFDLPYLL  104 (230)
T ss_pred             EEECCHHHHHHHHHHHHHh------cCC-----CEEEEecCCCCCHHHHH
Confidence            3346889999999999942      222     39999998 57999983

The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.97  E-value=0.24  Score=35.68  Aligned_cols=11  Identities=27%  Similarity=0.621  Sum_probs=6.6

Q ss_pred             ccccccccCCh
Q 024455           81 CNLCMNIFDSP   91 (267)
Q Consensus        81 C~~C~~~F~~~   91 (267)
                      |+.||..|.-.
T Consensus        29 CP~CG~~~~~~   39 (108)
T PF09538_consen   29 CPKCGTEFPPE   39 (108)
T ss_pred             CCCCCCccCcc
Confidence            66666666543

The function of members of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.44  E-value=0.23  Score=40.52  Aligned_cols=13  Identities=38%  Similarity=0.667  Sum_probs=9.2

Q ss_pred             CcccchhhcCCHH
Q 024455           45 KCAVCQKLSKSFE   57 (267)
Q Consensus        45 ~C~~C~~~f~~~~   57 (267)
                      .|++|++.|..+.
T Consensus         7 ~CPvC~~~F~~~~   19 (214)
T PF09986_consen    7 TCPVCGKEFKTKK   19 (214)
T ss_pred             ECCCCCCeeeeeE
Confidence            6777777777654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.32  E-value=0.29  Score=27.07  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=16.2

Q ss_pred             ccccccccCChhhHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~   99 (267)
                      |+.|++.|.+...+..|++
T Consensus         6 C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        6 CKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             ccccCCccCCHHHHHHHHC
Confidence            8888889988888888874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase

Probab=87.91  E-value=0.5  Score=39.09  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             hccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccc
Q 024455          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSL  243 (267)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l  243 (267)
                      +.--.+..+++..+.+++.+      .+|     .||||||+ .|||.+|
T Consensus        76 v~~~~~E~~LL~~f~~~i~~------~DP-----DiivG~Ni~~fdl~~L  114 (234)
T cd05776          76 VRIFENERALLNFFLAKLQK------IDP-----DVLVGHDLEGFDLDVL  114 (234)
T ss_pred             EEEeCCHHHHHHHHHHHHhh------cCC-----CEEEeeccCCCCHHHH
Confidence            44456888999999999942      333     29999999 7999998

The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are

>PRK04860 hypothetical protein; Provisional

Probab=87.44  E-value=0.38  Score=37.26  Aligned_cols=28  Identities=14%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             cccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      .|. |++   ....+++|.++|+++++|.|++
T Consensus       121 ~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~  148 (160)
T PRK04860        121 RCK-CQE---HQLTVRRHNRVVRGEAVYRCRR  148 (160)
T ss_pred             EcC-CCC---eeCHHHHHHHHhcCCccEECCC
Confidence            487 887   6788999999999999998654

>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase

Probab=86.78  E-value=1.9  Score=35.53  Aligned_cols=41  Identities=10%  Similarity=0.166  Sum_probs=31.0

Q ss_pred             HhhccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       193 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      ..+.--.+..+++..+.+++..      .+|     .||+|||+ .||+.+|.
T Consensus        73 ~~v~~~~~E~~LL~~f~~~i~~------~DP-----Dii~GyNi~~fd~~YL~  114 (231)
T cd05778          73 IPVEVVESELELFEELIDLVRR------FDP-----DILSGYEIQRSSWGYLI  114 (231)
T ss_pred             CeEEEeCCHHHHHHHHHHHHHH------hCC-----CEEEEeccccCcHHHHH
Confidence            3455567889999999999942      222     39999999 58999983

The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=86.07  E-value=0.39  Score=35.50  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=16.7

Q ss_pred             CCCCCcCCccccccc------ccccccc
Q 024455           66 PLSKAHCSGIFSDRG------CNLCMNI   87 (267)
Q Consensus        66 ~~~C~~C~k~f~~~~------C~~C~~~   87 (267)
                      |++|..||+.|...+      |+.||..
T Consensus         1 PH~Ct~Cg~~f~dgs~eil~GCP~CGg~   28 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKEILSGCPECGGN   28 (131)
T ss_pred             CcccCcCCCCcCCCcHHHHccCcccCCc
Confidence            577888888888753      9999743

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=0.65  Score=43.85  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             CcccchhhcCCHHHHHhhc-CCCCCCCcCC
Q 024455           45 KCAVCQKLSKSFESLREHL-TGPLSKAHCS   73 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-~~~~~C~~C~   73 (267)
                      .|..|...|-....|.+|+ ...|.|..|.
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~  213 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCD  213 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecC
Confidence            6777777777777777776 3445565554

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=85.25  E-value=2.4  Score=37.08  Aligned_cols=47  Identities=15%  Similarity=0.047  Sum_probs=37.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC----Cc----------------------ccc---ccCcchhhhhhhccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA----PV----------------------PFE---KTLSNAESQKKISGAID  127 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~----~~----------------------~C~---~~f~~~~~l~~H~~~~~  127 (267)
                      |-.|++.|.+-..-..||..+||-.    .|                      -|.   +.|+.-...+.||....
T Consensus       169 CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~  244 (390)
T KOG2785|consen  169 CLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKG  244 (390)
T ss_pred             eeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhcc
Confidence            9999999999999999999888632    22                      077   88999999999996543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=85.19  E-value=0.45  Score=34.24  Aligned_cols=28  Identities=21%  Similarity=0.493  Sum_probs=13.5

Q ss_pred             CcccchhhcCCHHHHHhhcCCCCCCCcCCccccc
Q 024455           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSD   78 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~   78 (267)
                      .|+.||+.|-.   |+   ..|..|+.||..|.-
T Consensus        11 ~Cp~CG~kFYD---Ln---k~PivCP~CG~~~~~   38 (108)
T PF09538_consen   11 TCPSCGAKFYD---LN---KDPIVCPKCGTEFPP   38 (108)
T ss_pred             cCCCCcchhcc---CC---CCCccCCCCCCccCc
Confidence            55555555533   11   234445555555543

The function of members of this family is unknown.

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A

Probab=83.19  E-value=1.7  Score=33.47  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=14.7

Q ss_pred             CceEEEecc-chhhhccccccC
Q 024455          227 KARLLVGHG-LEHDLDSLRMNY  247 (267)
Q Consensus       227 ~~~~lvgh~-~~~Dl~~l~~~~  247 (267)
                      ....+|+|| ..||+.+|+-..
T Consensus        56 ~~~~iv~yng~~FD~p~L~~~~   77 (164)
T PF13482_consen   56 EADNIVTYNGKNFDIPFLKRRA   77 (164)
T ss_dssp             TT--EEESSTTTTHHHHHHHHH
T ss_pred             cCCeEEEEeCcccCHHHHHHHH
Confidence            446899988 589999997433

...

>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins

Probab=82.71  E-value=3.3  Score=33.19  Aligned_cols=41  Identities=27%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCCCCCcccccCCCceEEEeccchhhhcccc--ccCCCCceeccccc
Q 024455          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKY  258 (267)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~--~~~~~~~~~dt~~~  258 (267)
                      ..|.+++.+            .+.+-|||++.+|+.+|.  ....-..++||.+.
T Consensus        55 ~~L~~iLe~------------~~i~Kv~h~~k~D~~~L~~~~gi~~~~~fDt~iA   97 (197)
T cd06148          55 NGLKDILES------------KKILKVIHDCRRDSDALYHQYGIKLNNVFDTQVA   97 (197)
T ss_pred             HHHHHHhcC------------CCccEEEEechhHHHHHHHhcCccccceeeHHHH
Confidence            456667743            345679999999999983  11111255898754

The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.

>cd00007 35EXOc 3'-5' exonuclease

Probab=82.43  E-value=1.2  Score=33.55  Aligned_cols=45  Identities=27%  Similarity=0.307  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhcccccc---CCCCceecccccc
Q 024455          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---YPDHMLRDTAKYR  259 (267)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~---~~~~~~~dt~~~~  259 (267)
                      .++.+.|.+++.+            .+..+||||+.+|+.+|.-.   .+ ..++||....
T Consensus        40 ~~~~~~l~~~l~~------------~~~~~v~~~~k~d~~~L~~~~~~~~-~~~~D~~~~a   87 (155)
T cd00007          40 EEDLEALKELLED------------EDITKVGHDAKFDLVVLARDGIELP-GNIFDTMLAA   87 (155)
T ss_pred             HHHHHHHHHHHcC------------CCCcEEeccHHHHHHHHHHCCCCCC-CCcccHHHHH
Confidence            5677778899953            34579999999999999532   22 2467887443

The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=82.35  E-value=0.4  Score=27.26  Aligned_cols=14  Identities=29%  Similarity=0.693  Sum_probs=7.0

Q ss_pred             cccccCccccCChH
Q 024455           15 HKCVACYKQFKRKD   28 (267)
Q Consensus        15 ~~C~~C~k~f~~~~   28 (267)
                      +.|+.|+..|.-..
T Consensus         3 ~~CP~C~~~~~v~~   16 (38)
T TIGR02098         3 IQCPNCKTSFRVVD   16 (38)
T ss_pred             EECCCCCCEEEeCH
Confidence            34555555544443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional

Probab=82.05  E-value=3  Score=42.34  Aligned_cols=38  Identities=21%  Similarity=0.157  Sum_probs=29.2

Q ss_pred             hccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccc
Q 024455          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSL  243 (267)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l  243 (267)
                      +..-.+..+++..+.+++.      ..+|     .||+|||+ .|||.+|
T Consensus       324 V~~f~sE~eLL~~f~~~I~------~~DP-----DII~GYNi~~FDlpYL  362 (1054)
T PTZ00166        324 VLSFETEKELLLAWAEFVI------AVDP-----DFLTGYNIINFDLPYL  362 (1054)
T ss_pred             EEEeCCHHHHHHHHHHHHH------hcCC-----CEEEecCCcCCcHHHH
Confidence            3445688999999999993      2223     39999998 5899998

>PHA02528 43 DNA polymerase; Provisional

Probab=80.99  E-value=6.8  Score=38.93  Aligned_cols=101  Identities=9%  Similarity=-0.028  Sum_probs=52.8

Q ss_pred             CCCceeeeeccccCCc-CC-CC--ccceeeEEEecCCCCeeEecccCCCCCccccccccc--cCCHHhhccCCCHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGG-SN-GT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT--GLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~-~~-~~--~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~--GIt~~~l~~~~~~~~v~~  206 (267)
                      ..-+++++|+|+.... +. ..  ...|..|.+.+.......-..+....+.........  -....++..-.+-.+++.
T Consensus       104 p~lrv~s~DIE~~~~~gfP~p~~~~d~IisIsl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~sE~eLL~  183 (881)
T PHA02528        104 SKIRIANLDIEVTAEDGFPDPEEAKYEIDAITHYDSIDDRFYVFDLGSVEEWDAKGDEVPQEILDKVVYMPFDTEREMLL  183 (881)
T ss_pred             CCccEEEEEEEECCCCCCCCcccCCCcEEEEEEecCCCCEEEEEEecCcccccccCCcccccccCCeeEEEcCCHHHHHH
Confidence            3556789999996522 11 11  334566777666655422222210000000000000  000011112468889999


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      .+.+++..      .+|     .||+|||+ .|||.+|.
T Consensus       184 ~F~~~i~~------~DP-----DII~GyNi~~FDlpYL~  211 (881)
T PHA02528        184 EYINFWEE------NTP-----VIFTGWNVELFDVPYII  211 (881)
T ss_pred             HHHHHHHH------hCC-----cEEEecCCccCCHHHHH
Confidence            99999932      222     39999997 68999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1wlj_A	189	Human Isg20 Length = 189		2e-12

>pdb|1WLJ|A Chain A, Human Isg20 Length = 189

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T + +
Sbjct: 6   EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             A P    + +IL++L              K +L+VGH L+HD  +L+ +   + + DT
Sbjct: 65  VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 256 AKYRPLMK 263
           +  R L +
Sbjct: 111 STDRLLWR 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	6e-43
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	5e-06
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	8e-06
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	1e-05
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	2e-04
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	3e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189

 Score =  143 bits (363), Expect = 6e-43
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 15/131 (11%)

Query: 133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 192
              + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T 
Sbjct: 3   GSREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61

Query: 193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 252
           + +  A P    + +IL++L              K +L+VGH L+HD  +L+ +   + +
Sbjct: 62  QHMVGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTI 107

Query: 253 RDTAKYRPLMK 263
            DT+  R L +
Sbjct: 108 YDTSTDRLLWR 118

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++ + 
Sbjct: 38  VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMK 97

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR 253
             E      L       L+  G       L       R+ YP    +
Sbjct: 98  LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK 138

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 106 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 165

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR 253
             E      L       L+  G       L       R+ YP    +
Sbjct: 166 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK 206

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           +  ++     I   FH YVQP +   +T +  E+TG+ +  +     L++V +++ E + 
Sbjct: 57  ILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMA 116

Query: 214 N 214
            
Sbjct: 117 K 117

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL 212
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++
Sbjct: 156 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLM 214

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREHL 63
          ++C  C + +    +   H   S+    +   C  C    K F   +++  H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC---FKEFTRKDNMTAHV 60

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHC 72
          + +C  C   +     L  HM  + H      +         S    R  L     K   
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDA 77

Query: 73 SGIFSDRGCNLCMNIFDSPSSLIKH 97
            +     C  C + F+S   L  H
Sbjct: 78 QKVLK---CMYCGHSFESLQDLSVH 99

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 16/93 (17%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           +   ++  +HT ++P   ++    E+TG+T+E ++N   ++EV  + L  L +       
Sbjct: 40  QGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED------- 92

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 254
                   ++V H    D   LR+     M  D
Sbjct: 93  -------SIIVAHNANFDYRFLRLWIKKVMGLD 118

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 161 LVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN 214
           + ++     F+ YV+P L   +T    + TG+ +  I  A     V ++  + L  
Sbjct: 56  IREDIS---FNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLIT 108

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLS 68
          HKC  C K F RKD L  HM+   H+  +P KC  C   +    SL +HL   +   P  
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 69 KAHCSGIFSDRGCNLCMNIFDSPSSLIKHK 98
                      C +C     + S L  H 
Sbjct: 67 ------------CQICPYASRNSSQLTVHL 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKA 70
            C  C K F+   HL  H     HS  +P  C VC    K  + +  H+    G + K 
Sbjct: 8  VACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 71 HCSGIFSDRGCNLCMNIFDSPSSLIKH 97
          +         C  C   F  P  L  H
Sbjct: 66 Y--------ICQSCGKGFSRPDHLNGH 84

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK 51
          + C +C K F R DHL  H+K   H+  +P KC V   
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-QVHTSERPHKCQVWVS 49

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI-SYHSVHQP-KCAVCQKLSKSFE---SLREHL 63
           +C  C    ++K  L  H +  +         C  C    K FE   S+  H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC---GKRFEKPDSVAAHR 58

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREH 62
           +C  C + F R DHL  H++   H+  +P  C +C    + F   +  + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDIC---GRKFARSDERKRH 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.89
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.81
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.79
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	99.75
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.75
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2gui_A	194	DNA polymerase III epsilon subunit; DNA polymerase	99.71
2igi_A	180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	99.71
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.67
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	99.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.65
2gbz_A	194	Oligoribonuclease; ORN, deddh, structural genomics	99.64
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.63
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.63
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	99.63
3mxm_B	242	Three prime repair exonuclease 1; RNAse H-like fol	99.62
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.62
3u3y_B	314	Three prime repair exonuclease 1; RNAse H fold, 3'	99.61
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.61
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.6
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	99.6
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	99.6
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.6
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	99.59
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.59
3tr8_A	186	Oligoribonuclease; transcription, hydrolase; 2.50A	99.59
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.58
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	99.55
2f96_A	224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	99.54
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.53
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.52
3v9w_A	235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	99.5
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.49
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.49
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.46
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.42
2qxf_A	482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	99.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.42
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.4
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.39
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.37
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.36
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.35
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.35
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.33
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.33
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.32
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.32
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.32
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.32
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.29
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.28
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.28
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.26
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.25
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.24
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.24
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.24
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.21
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.21
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.2
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.2
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.18
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.17
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.17
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.16
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.15
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.13
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.12
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.12
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.03
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.0
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.97
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.96
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.92
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.92
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.92
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.91
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.89
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.89
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.89
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.87
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.85
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.81
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.81
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.75
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.73
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.72
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.72
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.72
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.71
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.71
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.71
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.71
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.7
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.7
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.69
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.69
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.66
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.65
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.62
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.61
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.59
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.59
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.55
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.55
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.55
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.55
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.54
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.54
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.53
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.52
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.52
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.52
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.52
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.52
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.52
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.52
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.51
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.51
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.51
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.51
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.51
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.51
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.5
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.5
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.5
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.5
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.5
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.49
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.49
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.49
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.49
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.49
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.48
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.47
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.47
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.47
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.47
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.47
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.45
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.45
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.45
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.44
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.44
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.43
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.43
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.43
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.42
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.42
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.42
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.41
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.41
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.4
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.4
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.4
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.4
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.4
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.4
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.4
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.4
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.4
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.39
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.39
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.39
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.39
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.39
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.39
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.39
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.39
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.38
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.38
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.38
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.38
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.38
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.37
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.37
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.37
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.37
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.37
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.37
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.36
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.36
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.36
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.35
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.35
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.35
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.35
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.35
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.34
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.34
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.34
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.33
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.32
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.32
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.32
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.32
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.32
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.31
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.3
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.28
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.27
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.26
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.26
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.25
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.55
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.23
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.22
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.21
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.21
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.19
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.16
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.41
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.1
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.08
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.05
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.03
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.02
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.01
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.01
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.99
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.95
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.94
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.94
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.92
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.91
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.11
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.87
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.86
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.84
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.99
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.79
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.77
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.73
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.72
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.72
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.68
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.64
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.48
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.4
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.35
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.75
4hec_A	190	Putative uncharacterized protein; ssgcid, structur	96.66
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.03
2kfn_A	605	Klenow fragment of DNA polymerase I; complex (poly	95.79
1x9m_A	698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	95.75
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.41
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.21
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.15
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.75
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.41
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	91.62
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	91.52
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.46
1noy_A	388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	90.8
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.64
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.89
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.88
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	84.76
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	84.52
3qex_A	903	DNA polymerase, GP43; difluorotoluene nucleoside;	84.39
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.74
2a1r_A	430	Poly(A)-specific ribonuclease PARN; DEDD, nuclease	82.05
3ikm_A	1172	DNA polymerase subunit gamma-1; human mitochondria	81.87
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	81.55
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	81.24
3iay_A	919	DNA polymerase delta catalytic subunit; protein-DN	81.1

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.89  E-value=3.9e-24  Score=170.58  Aligned_cols=136  Identities=25%  Similarity=0.426  Sum_probs=107.1

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccc---
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG---   80 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~---   80 (267)
                      .++++|.|+.|++.|.....|..|++.  |.++++ .|+.|++.|.+...|..|+     .++|.|+.|++.|....   
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   94 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR   94 (190)
T ss_dssp             --------------CCSSHHHHHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHH
Confidence            578999999999999999999999999  999888 9999999999999999998     57899999999998763   


Q ss_pred             -------------ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhccccccccccCCCceeeeeccc
Q 024455           81 -------------CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEM  144 (267)
Q Consensus        81 -------------C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~  144 (267)
                                   |+.|++.|.+.+.|..|+++|+++++|.   |++.|.....|..|+..+.+.        ..+.|+.
T Consensus        95 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--------~~~~C~~  166 (190)
T 2i13_A           95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE--------KPYKCPE  166 (190)
T ss_dssp             HHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC--------CCEECTT
T ss_pred             HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC--------CCeECCC
Confidence                         9999999999999999999999999997   899999999999999776542        3578999


Q ss_pred             cCCcCCCCccc
Q 024455          145 VGGGSNGTLDL  155 (267)
Q Consensus       145 ~g~~~~~~~~~  155 (267)
                      |+..+.....+
T Consensus       167 C~~~f~~~~~L  177 (190)
T 2i13_A          167 CGKSFSRRDAL  177 (190)
T ss_dssp             TCCEESSHHHH
T ss_pred             CCCccCCHHHH
Confidence            99987765544

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.87  E-value=5.2e-23  Score=164.01  Aligned_cols=118  Identities=25%  Similarity=0.432  Sum_probs=106.6

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccc---
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG---   80 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~---   80 (267)
                      .++++|.|+.|++.|.+...|..|+++  |.++++ .|+.|++.|.+..+|..|+     .++|.|+.|++.|.+..   
T Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  122 (190)
T 2i13_A           45 TGEKPYKCPECGKSFSDKKDLTRHQRT--HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR  122 (190)
T ss_dssp             ---CCEECTTTCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHH
T ss_pred             CCCCCccCCCcCchhCCHHHHHHHHHh--cCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH
Confidence            478899999999999999999999999  988888 9999999999999999998     57899999999999863   


Q ss_pred             -------------ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhccccccc
Q 024455           81 -------------CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDEK  129 (267)
Q Consensus        81 -------------C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~~  129 (267)
                                   |+.|++.|.+.+.|..|+++|++++||.   |++.|.....|..|++.+.+.
T Consensus       123 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred             HHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence                         9999999999999999999999999997   899999999999999776553

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=2.2e-22  Score=160.38  Aligned_cols=140  Identities=19%  Similarity=0.277  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCCcccc--ccCccccCChHHHHHHHhHhcCCCCCC-Cc--ccchhhcCCHHHHHhhc-----CCCCCCC
Q 024455            1 MDTEAELPKRSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KC--AVCQKLSKSFESLREHL-----TGPLSKA   70 (267)
Q Consensus         1 ~~~~~~~~~~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C--~~C~~~f~~~~~l~~H~-----~~~~~C~   70 (267)
                      |+.++.|.  ++++|.|  +.|++.|.+...|..|+++  |+++++ .|  +.|++.|.+...|..|+     .++|.|+
T Consensus         1 ~~~~~~~~--~~~~~~C~~~~C~~~f~~~~~L~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   76 (190)
T 1tf6_A            1 MGEKALPV--VYKRYICSFADCGAAYNKNWKLQAHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD   76 (190)
T ss_dssp             -----------CCCCBCSSTTTCCBCSSHHHHHHHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECC
T ss_pred             CccccccC--CCcceeCCCCCCcchhCCHHHHHHHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCC
Confidence            45555554  8999999  7899999999999999999  999888 99  88999999999999998     4689999


Q ss_pred             --cCCccccccc------------------c--cccccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhc
Q 024455           71 --HCSGIFSDRG------------------C--NLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKIS  123 (267)
Q Consensus        71 --~C~k~f~~~~------------------C--~~C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~  123 (267)
                        .|++.|.+..                  |  +.|++.|.+.+.|..|+++|++++||.     |++.|.....|..|+
T Consensus        77 ~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A           77 SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             SSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH
Confidence              8999998652                  8  899999999999999999999999995     788999999999999


Q ss_pred             cccccccccCCCceeeeeccc---cCCcCCCCccc
Q 024455          124 GAIDEKRTCRGPKAVAMDCEM---VGGGSNGTLDL  155 (267)
Q Consensus       124 ~~~~~~r~~~~~~~~~~dcE~---~g~~~~~~~~~  155 (267)
                      +.+.+           +.|+.   |+..+.....+
T Consensus       157 ~~H~~-----------~~C~~~~~C~~~f~~~~~l  180 (190)
T 1tf6_A          157 KVHAG-----------YPCKKDDSCSFVGKTWTLY  180 (190)
T ss_dssp             TSSCS-----------CCCCSTTTCCCCCSCHHHH
T ss_pred             HHhCC-----------CcCCCCCcCCCccccHHHH
Confidence            76543           55777   88776655433

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5

Probab=99.85  E-value=5e-22  Score=158.35  Aligned_cols=111  Identities=35%  Similarity=0.613  Sum_probs=98.0

Q ss_pred             CceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhc
Q 024455          135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~  214 (267)
                      ..++++|+||+|.+... ..+++.+.+++.++..+++++|+|..+|+++.+++||||+++|+++|++++|+.+|.+|+  
T Consensus         5 ~~~vviD~ETTGl~~~~-~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l--   81 (189)
T 1wlj_A            5 REVVAMDCEMVGLGPHR-ESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL--   81 (189)
T ss_dssp             -CEEEEEEEEEEETTTT-EEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH--
T ss_pred             CeEEEEEeECcCcCCCC-CceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHH--
Confidence            46799999999986443 234456677777888889999999999999999999999999999999999999999999  


Q ss_pred             CCCCCcccccCCCceEEEeccchhhhccccccCCCCceeccccccc
Q 024455          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRP  260 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~~~~  260 (267)
                                  ++.+|||||+.||+.||+..+|+..++||..+++
T Consensus        82 ------------~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~  115 (189)
T 1wlj_A           82 ------------KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRL  115 (189)
T ss_dssp             ------------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHH
T ss_pred             ------------CCCEEEECCcHHHHHHHHHhCCCCceechHhhhh
Confidence                        7789999999999999999999989999997754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.5e-20  Score=137.87  Aligned_cols=111  Identities=20%  Similarity=0.287  Sum_probs=94.0

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcCCCCCCCcCCccccccccccccccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIF   88 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F   88 (267)
                      +++++|.|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+.....- .-.+   ...|+.|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~~---~~~C~~C~~~f   76 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRK--HTGEKPFECPKCGKCYFRKENLLEHEARNCMN-RSEQ---VFTCSVCQETF   76 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHH--HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC-SCCC---CEECSSSCCEE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHh--CCCCCCeECCCCCchhcCHHHHHHHHhhhhcC-CCCC---CeECCCCCCcc
Confidence            688999999999999999999999999  998888 9999999999999999998210000 0000   11378899999


Q ss_pred             CChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcccc
Q 024455           89 DSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAI  126 (267)
Q Consensus        89 ~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~  126 (267)
                      .....|..|+++|++++||.   |++.|.....|+.|+...
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  117 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL  117 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHH
Confidence            99999999999999999997   899999999999999643

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.81  E-value=8.6e-21  Score=142.52  Aligned_cols=88  Identities=22%  Similarity=0.326  Sum_probs=78.2

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc---CCCCCCCcCCcccccccccccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCM   85 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C~   85 (267)
                      .|+++|.|++|++.|.+.+.|..|+++  |++++| .|++||+.|.+.+.|..|+   ++..++          .|++||
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~----------~C~~C~   85 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNI--HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY----------QCLACG   85 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHH--HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCE----------EESSSC
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHH--cCCCCCeeCCccCeecccccchhhhccccCCCccc----------cCCCCC
Confidence            589999999999999999999999999  999999 9999999999999999999   332222          377888


Q ss_pred             cccCChhhHHHHHHHhcCCCCccc
Q 024455           86 NIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        86 ~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      +.|.+.+.|..|+++|++++|+.|
T Consensus        86 k~F~~~~~L~~H~~~hh~~~p~~~  109 (133)
T 2lt7_A           86 KSFINYQFMSSHIKSVHSQDPSGD  109 (133)
T ss_dssp             CEESSHHHHHHHHHHHTCCCTTSS
T ss_pred             CCcCCHHHHHHHhHHhcCCCCCCC
Confidence            999999999999999999887643

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.80  E-value=8.3e-20  Score=145.38  Aligned_cols=116  Identities=18%  Similarity=0.274  Sum_probs=104.7

Q ss_pred             CCCCcccc--ccCccccCChHHHHHHHhHhcCCCCCC-Ccc--cchhhcCCHHHHHhhc-------CCCCCC--CcCCcc
Q 024455           10 RSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-------TGPLSK--AHCSGI   75 (267)
Q Consensus        10 ~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-------~~~~~C--~~C~k~   75 (267)
                      +++++|.|  +.|++.|.+...|..|+++  |.++++ .|+  .|++.|.+...|..|+       ..+|.|  +.|++.
T Consensus        38 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~  115 (190)
T 1tf6_A           38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLT--HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA  115 (190)
T ss_dssp             HCCCSSCCSSTTCCCCCSSHHHHHHHHTT--TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEE
T ss_pred             CCCCCccCCCCCCChhhCCHHHHHHHHHH--ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccc
Confidence            36889999  8999999999999999999  999998 999  8999999999999998       247899  999999


Q ss_pred             ccccc----------------ccc--cccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhccccc
Q 024455           76 FSDRG----------------CNL--CMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAID  127 (267)
Q Consensus        76 f~~~~----------------C~~--C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~  127 (267)
                      |.+..                |+.  |++.|.+.+.|..|+++|++-+...   |++.|.....|..|++.+.
T Consensus       116 f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          116 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             CSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCSCCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCCCcCCCCCcCCCccccHHHHHHHHHhhc
Confidence            99863                988  9999999999999999999844444   9999999999999997654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.79  E-value=6.5e-20  Score=134.67  Aligned_cols=102  Identities=20%  Similarity=0.455  Sum_probs=91.8

Q ss_pred             CCCCcccccc--CccccCChHHHHHHHhHhcCCCCCC-Ccc--cchhhcCCHHHHHhhc-----CCCCCCCcCCcccccc
Q 024455           10 RSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDR   79 (267)
Q Consensus        10 ~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~   79 (267)
                      +++++|.|+.  |++.|.+...|..|+++  |.++++ .|+  .|++.|.+...|..|+     .++|.           
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~-----------   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ-----------   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEE-----------
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHh--hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCcc-----------
Confidence            5889999987  99999999999999999  998888 999  7999999999999998     34444           


Q ss_pred             cccccccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhccc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGA  125 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~~~  125 (267)
                       |+.|++.|...+.|..|+++|+++++|.     |++.|.....|..|++.
T Consensus        69 -C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           69 -CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             -CTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             -CCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence             6778889999999999999999999885     68999999999999854

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.6e-19  Score=138.91  Aligned_cols=111  Identities=22%  Similarity=0.370  Sum_probs=74.8

Q ss_pred             CCccccccCccccCChHHHHHHHh---HhcCCCCCC-Cccc-----chhhcCCHHHHHhhc-----CCCCCCCc--CCcc
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMK---ISYHSVHQP-KCAV-----CQKLSKSFESLREHL-----TGPLSKAH--CSGI   75 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~---~~~H~~~~~-~C~~-----C~~~f~~~~~l~~H~-----~~~~~C~~--C~k~   75 (267)
                      |.+|+|+.|++.|.+...|..|++   +  |.++++ .|+.     |++.|.+...|..|+     .++|.|+.  |++.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~--h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   78 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHI--HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS   78 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTS--SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhcc--CCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCc
Confidence            568999999999999999999998   5  888777 7664     459999999999998     46788753  5555


Q ss_pred             ccccc----------------ccc--cccccCChhhHHHHH-HHhcCCCCcc-----ccccCcchhhhhhhcc
Q 024455           76 FSDRG----------------CNL--CMNIFDSPSSLIKHK-EACSLSAPVP-----FEKTLSNAESQKKISG  124 (267)
Q Consensus        76 f~~~~----------------C~~--C~~~F~~~~~L~~H~-~~h~~~~~~~-----C~~~f~~~~~l~~H~~  124 (267)
                      |.+..                |+.  |++.|.+.+.|..|+ ++|+++++|.     |++.|.....|..|+.
T Consensus        79 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A           79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             CSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHH
Confidence            54431                444  555555555555554 4454444442     3444555555555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.77  E-value=3.5e-19  Score=131.79  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=89.0

Q ss_pred             CCCccccc--cCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      ++++|.|+  .|++.|.+...|..|+++  | +.++ .|+.|++.|.+...|..|+     .++|.|.          ++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~   68 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHT--H-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT----------FE   68 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGG--G-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECC----------ST
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHH--c-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCC----------CC
Confidence            46799999  899999999999999999  8 6677 9999999999999999998     3345542          23


Q ss_pred             ccccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhcccccc
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~~~~~~  128 (267)
                      .|++.|...+.|..|+++|+++++|.     |++.|.....|..|+..+.+
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             TCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            48999999999999999999999885     68899999999999976654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=3.5e-18  Score=122.88  Aligned_cols=88  Identities=24%  Similarity=0.520  Sum_probs=78.8

Q ss_pred             CCCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccc
Q 024455            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGC   81 (267)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C   81 (267)
                      +..++++|.|+.|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+     .++|.            |
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C   76 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK------------C   76 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHH--HCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTS------------C
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeE------------C
Confidence            34678999999999999999999999999  998888 9999999999999999998     23444            6


Q ss_pred             cccccccCChhhHHHHHHHhcCCCCccc
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      ++|++.|.....|..|+++|+++++|.+
T Consensus        77 ~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           77 QECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            7788999999999999999999998763

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}

Probab=99.75  E-value=7.5e-19  Score=139.56  Aligned_cols=112  Identities=22%  Similarity=0.277  Sum_probs=94.6

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~  212 (267)
                      ...++++|+||+|.+. .+++++++.+.+.++.....|+.+|+|..+++++.+++||||++++++++++++|+++|.+++
T Consensus        11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l   90 (186)
T 2p1j_A           11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFL   90 (186)
T ss_dssp             --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHS
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHHH
Confidence            4568999999999874 467888888888755444459999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCceEEEeccchhhhccccc-------cCCCCceecccccc
Q 024455          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAKYR  259 (267)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~~~~~dt~~~~  259 (267)
                                    ++.+|||||+.||+.||+.       ..|...++||..+.
T Consensus        91 --------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~  130 (186)
T 2p1j_A           91 --------------EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALA  130 (186)
T ss_dssp             --------------SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
T ss_pred             --------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHH
Confidence                          7789999999999999963       34456789987443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=133.82  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=90.0

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCC---------CCcccchhhcCCHHHHHhhc-----CCCCCCCcCCccc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQ---------PKCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIF   76 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~---------~~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f   76 (267)
                      .+.+|.|+.|++.|.+...|..|++.+ |.+..         ..|..|++.|.+...|..|+     .++|.|..     
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~-H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-----   95 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF-----   95 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTT-TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC-----
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhh-cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc-----
Confidence            567899999999999999999999874 76654         37999999999999999998     34565421     


Q ss_pred             ccccccccccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhccccccc
Q 024455           77 SDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKISGAIDEK  129 (267)
Q Consensus        77 ~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~~~~~~~  129 (267)
                           +.|++.|.....|..|+++|+++++|.     |++.|.....|..|++.+.+.
T Consensus        96 -----~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           96 -----PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             -----TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             -----CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence                 228888899999999999999999885     778999999999999766543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.2e-18  Score=119.68  Aligned_cols=86  Identities=33%  Similarity=0.571  Sum_probs=76.9

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      ..++++|.|+.|++.|.+...|..|++.  |.++++ .|+.|++.|.+...|..|+     .++|.            |+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK------------CQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGG--CCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEE------------CS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHh--cCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCcc------------CC
Confidence            4688999999999999999999999999  999888 9999999999999999998     23343            77


Q ss_pred             ccccccCChhhHHHHHHHhcCCCCcc
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      .|++.|...+.|..|+++|+++++..
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            78899999999999999999987643

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*

Probab=99.71  E-value=9.3e-18  Score=134.15  Aligned_cols=109  Identities=20%  Similarity=0.343  Sum_probs=92.3

Q ss_pred             CceeeeeccccCCcC------CCCccceeeEEEecCCCC-eeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHH
Q 024455          135 PKAVAMDCEMVGGGS------NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~------~~~~~~i~~v~vvd~~~~-~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~  207 (267)
                      ..++++|+|++|...      ..++++++.|.+.++... ..|+.+|+|..+++++.+++||||+++|++++++++|+.+
T Consensus         9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~   88 (194)
T 2gui_A            9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADE   88 (194)
T ss_dssp             CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHHHH
T ss_pred             CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHHHHHH
Confidence            357899999999876      367888888888754322 3589999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCceEEEeccchhhhccccc-------cCCC----Cceecccc
Q 024455          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPD----HMLRDTAK  257 (267)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~-------~~~~----~~~~dt~~  257 (267)
                      |.+++              ++.+|||||+.||+.||+.       .+|.    ..++||..
T Consensus        89 ~~~~l--------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~  135 (194)
T 2gui_A           89 FMDYI--------------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLA  135 (194)
T ss_dssp             HHHHH--------------TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHH
T ss_pred             HHHHH--------------CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHH
Confidence            99999              7789999999999999963       3332    47889863

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A

Probab=99.71  E-value=3.8e-18  Score=134.76  Aligned_cols=111  Identities=19%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             ceeeeeccccCCcCC-CCccceeeEEEecCCCCee---EecccCCCCCcccc----c---cccccCCHHhhccCCCHHHH
Q 024455          136 KAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVI---FHTYVQPQLPVTNY----R---YEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~---~~~~v~P~~~i~~~----~---~~~~GIt~~~l~~~~~~~~v  204 (267)
                      .++++|+||+|.+.. +++++++.| ++++++..+   ++.+|+|..++++.    .   +.+||||+++++++|++++|
T Consensus         6 ~~v~iD~ETTGl~~~~~~IieIg~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~~v   84 (180)
T 2igi_A            6 NLIWIDLEMTGLDPERDRIIEIATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREA   84 (180)
T ss_dssp             CEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHH
T ss_pred             cEEEEEeeCCCCCCCCCceEEEEEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHHHH
Confidence            579999999998754 678888888 556665543   89999998876554    3   55699999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC------CCceecc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDT  255 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~------~~~~~dt  255 (267)
                      +.+|++|+++..      +  +++.+|||||+.||+.||+..++      ...++|+
T Consensus        85 ~~~~~~~l~~~~------~--~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~  133 (180)
T 2igi_A           85 ELATLEFLKQWV------P--AGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDV  133 (180)
T ss_dssp             HHHHHHHHTTTS------C--TTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEET
T ss_pred             HHHHHHHHHHhC------C--CCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeH
Confidence            999999993200      0  01369999999999999986543      2356783

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=7.7e-18  Score=117.30  Aligned_cols=82  Identities=21%  Similarity=0.543  Sum_probs=70.4

Q ss_pred             CCCccccc--cCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      |+++|.|+  .|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+     .++|.            |+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHH--hCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCcc------------CC
Confidence            57899998  699999999999999999  998888 9999999999999999998     33444            67


Q ss_pred             ccccccCChhhHHHHHHHhcCCCC
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      .|++.|...+.|..|+++|+++++
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC---
T ss_pred             CCCchhCCHHHHHHHHHHhcccCC
Confidence            788899999999999999998763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=9.8e-17  Score=115.58  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc--CCCCCCCcCCcccccccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL--TGPLSKAHCSGIFSDRGCNLCM   85 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~--~~~~~C~~C~k~f~~~~C~~C~   85 (267)
                      .+++++|.|+.|++.|.....|..|+++  |.  ++ .|.+|++.|.....|..|+  .+..+.          .|+.|+
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~--H~--~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~----------~C~~C~   76 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERL--CR--NAAVCPYCSLRFFSPELKQEHESKCEYKKL----------TCLECM   76 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHH--HH--HSBCCTTTCCCBSSHHHHHHHHHHCSTGGG----------EEGGGT
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHH--CC--CCccCCCCCCccCCHHHHHHHHHcCCCCCc----------cCcccc
Confidence            4689999999999999999999999999  84  56 9999999999999999998  222111          388899


Q ss_pred             cccCChhhHHHHHH-HhcCCCCccccc
Q 024455           86 NIFDSPSSLIKHKE-ACSLSAPVPFEK  111 (267)
Q Consensus        86 ~~F~~~~~L~~H~~-~h~~~~~~~C~~  111 (267)
                      +.|.....|..|++ +|+++++|+|..
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999997 899999988653

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.3e-16  Score=112.19  Aligned_cols=82  Identities=28%  Similarity=0.447  Sum_probs=72.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc---C----CCCCCCcCCccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---T----GPLSKAHCSGIFSDRG   80 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~----~~~~C~~C~k~f~~~~   80 (267)
                      .+++++|.|+.|++.|.+...|..|+++  |.++++ .|+.|++.|.+...|..|+   .    ++|.            
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~------------   67 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI------------   67 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHH--SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBC------------
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHh--cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceE------------
Confidence            3689999999999999999999999999  999998 9999999999999999998   2    3444            


Q ss_pred             ccccccccCChhhHHHHHH-HhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKE-ACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~-~h~~~  104 (267)
                      |+.|++.|...+.|..|++ +|.++
T Consensus        68 C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           68 CQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhcCCC
Confidence            6778889999999999986 67654

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5

Probab=99.65  E-value=5.3e-17  Score=130.75  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             CCceeeeeccccCCcC-----CCCccceeeEEEecCCCC--eeEecccCCCC--CccccccccccCCHHhhccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGGS-----NGTLDLCARVCLVDEDEN--VIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-----~~~~~~i~~v~vvd~~~~--~~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v  204 (267)
                      ...++++|+|++|...     ..++++++.|.+...++.  ..|+.+|+|..  +++++.+++||||+++|++++++++|
T Consensus         9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v   88 (204)
T 1w0h_A            9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV   88 (204)
T ss_dssp             SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred             cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence            3457999999999863     467888888877532344  34999999998  89999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhc-ccc-------ccCCCC--ceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPDH--MLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~-~l~-------~~~~~~--~~~dt~~~~  259 (267)
                      +.+|.+|+.+..       ..+.+.+|||||+.||+. ||+       +..|..  .++||..++
T Consensus        89 ~~~~~~~l~~~~-------~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~  146 (204)
T 1w0h_A           89 LKKVIDWMKLKE-------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY  146 (204)
T ss_dssp             HHHHHHHHHHTT-------BTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHH
T ss_pred             HHHHHHHHHhcC-------CCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHH
Confidence            999999995311       001235799999999996 995       445654  789997543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.65  E-value=5.9e-17  Score=110.68  Aligned_cols=76  Identities=32%  Similarity=0.605  Sum_probs=68.4

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNI   87 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~   87 (267)
                      ||.|+.|++.|.....|..|+++  |.++++ .|+.|++.|.+...|..|+     .++|.            |+.|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI--HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK------------CQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH--HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEE------------CTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHH--cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCc------------CCCcchh
Confidence            68999999999999999999999  998888 9999999999999999998     34444            6778889


Q ss_pred             cCChhhHHHHHHHhcC
Q 024455           88 FDSPSSLIKHKEACSL  103 (267)
Q Consensus        88 F~~~~~L~~H~~~h~~  103 (267)
                      |.+.+.|..|+++|+|
T Consensus        67 f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           67 FSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ESSHHHHHHHHHHHC-
T ss_pred             hCChHHHHHHHHhhCC
Confidence            9999999999999975

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}

Probab=99.64  E-value=2.4e-17  Score=131.72  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecCCCC---eeEecccCCCCCc----ccccccc---ccCCHHhhccCCCHH
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDEN---VIFHTYVQPQLPV----TNYRYEV---TGLTEEDIKNAMPLK  202 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~---~~~~~~v~P~~~i----~~~~~~~---~GIt~~~l~~~~~~~  202 (267)
                      ...++++|+||+|.+. .+++++++.|. .++.+.   ..|+.+|+|..++    ++|..++   ||||+++++++|+++
T Consensus         8 ~~~~vviD~ETTGl~p~~d~IieIgav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~   86 (194)
T 2gbz_A            8 NDRLIWIDLEMTGLDTDRDSIIEIATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHA   86 (194)
T ss_dssp             CCEEEEEEEEESCSCTTTCCEEEEEEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHH
T ss_pred             CCCEEEEEeECCCCCCCCCccEEEEEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHH
Confidence            3468999999999875 46788888887 666643   2478899998776    5556555   999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCCceE------EEeccchhhhccccccCCC------Cceecccc
Q 024455          203 EVKDKILEILNNGESTGRLMLDDGKARL------LVGHGLEHDLDSLRMNYPD------HMLRDTAK  257 (267)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~------lvgh~~~~Dl~~l~~~~~~------~~~~dt~~  257 (267)
                      +|+.+|++||              ++.+      |||||+.||+.||+..+++      ...+|+..
T Consensus        87 ev~~~~~~~l--------------~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~  139 (194)
T 2gbz_A           87 QAEAQTVAFL--------------GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVST  139 (194)
T ss_dssp             HHHHHHHHHH--------------TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHH
T ss_pred             HHHHHHHHHH--------------HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHH
Confidence            9999999999              4444      9999999999999865543      35667653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.63  E-value=2.4e-16  Score=116.43  Aligned_cols=85  Identities=24%  Similarity=0.391  Sum_probs=71.8

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc--chhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      ++++|.|+.|++.|.+...|..|+++  |.++++ .|..  |++.|.+...|..|+     .++|.|+          ++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~   98 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLV--HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP----------FD   98 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGG--TSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCC----------ST
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECC----------CC
Confidence            57899999999999999999999999  999998 9975  999999999999998     4566652          24


Q ss_pred             ccccccCChhhHHHHHHHhcCCCCc
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~~  107 (267)
                      .|++.|.+.+.|..|+++|++++++
T Consensus        99 ~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           99 GCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCCccCCHHHHHHHHHHHcccccC
Confidence            5889999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.5e-16  Score=120.81  Aligned_cols=92  Identities=34%  Similarity=0.621  Sum_probs=82.8

Q ss_pred             CCCCccccccC-----ccccCChHHHHHHHhHhcCCCCCC-Cccc--chhhcCCHHHHHhhc-----CCCCCCCc--CCc
Q 024455           10 RSTARHKCVAC-----YKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAH--CSG   74 (267)
Q Consensus        10 ~~~k~~~C~~C-----~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~--C~k   74 (267)
                      .++++|.|+.|     ++.|.+...|..|+++  |.++++ .|+.  |++.|.+...|..|+     .++|.|+.  |++
T Consensus        30 ~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  107 (155)
T 2gli_A           30 GERKEFVCHWGGCSRELRPFKAQYMLVVHMRR--HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK  107 (155)
T ss_dssp             SCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH--HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCC
T ss_pred             CCCcceeCCCCCccchhhhhhhHHHHHHHHHh--cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCC
Confidence            47789998743     4999999999999999  998888 9985  999999999999998     56899998  999


Q ss_pred             cccccc-----------------ccc--cccccCChhhHHHHHHHhcC
Q 024455           75 IFSDRG-----------------CNL--CMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        75 ~f~~~~-----------------C~~--C~~~F~~~~~L~~H~~~h~~  103 (267)
                      .|.+..                 |+.  |++.|.+.+.|..|+++|+|
T Consensus       108 ~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          108 AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             EESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            998863                 988  99999999999999999986

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=133.61  Aligned_cols=119  Identities=18%  Similarity=0.252  Sum_probs=94.2

Q ss_pred             CCceeeeeccccCCc-----CCCCccceeeEEEecCCCCee--EecccCCCC--CccccccccccCCHHhhccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~-----~~~~~~~i~~v~vvd~~~~~~--~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v  204 (267)
                      ...++++|+|++|..     ...++++++.|.+.+..+.++  |+++|+|..  +|+++.+.+||||+++|++++++++|
T Consensus        77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev  156 (299)
T 1zbh_A           77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV  156 (299)
T ss_dssp             CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred             CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence            456799999999985     356788888888876555544  999999998  89999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhc-cccc-------cCCCC--ceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLRM-------NYPDH--MLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~-~l~~-------~~~~~--~~~dt~~~~  259 (267)
                      +.+|.+||.+..-       .+.+.+|||||+.||+. ||+.       ..|..  .+|||..++
T Consensus       157 l~~f~~~l~~~~~-------~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~  214 (299)
T 1zbh_A          157 LKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY  214 (299)
T ss_dssp             HHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH
T ss_pred             HHHHHHHHhhccc-------CCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHH
Confidence            9999999953100       00125999999999999 9953       34432  588986443

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A

Probab=99.62  E-value=1.3e-16  Score=131.68  Aligned_cols=114  Identities=14%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             CceeeeeccccCCc-CCCCccceeeEEEecC-------------------CCCeeEecccCCCCCccccccccccCCHHh
Q 024455          135 PKAVAMDCEMVGGG-SNGTLDLCARVCLVDE-------------------DENVIFHTYVQPQLPVTNYRYEVTGLTEED  194 (267)
Q Consensus       135 ~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~-------------------~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~  194 (267)
                      ..++++|+|++|.. ..+++++++.|.+.++                   .....++++|+|..+|++..+.+||||+++
T Consensus        12 ~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~~   91 (242)
T 3mxm_B           12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE   91 (242)
T ss_dssp             SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             ceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHHH
Confidence            45799999999987 4578999999998765                   234578999999999999999999999999


Q ss_pred             hccC--CCHH-HHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccccc-------cC--CCCceeccccc
Q 024455          195 IKNA--MPLK-EVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM-------NY--PDHMLRDTAKY  258 (267)
Q Consensus       195 l~~~--~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~-------~~--~~~~~~dt~~~  258 (267)
                      |+++  |+++ +|+.+|.+|+++.          +...+|||||+ .||+.||+.       ..  +...++||..+
T Consensus        92 l~~~g~p~~~~ev~~~~~~fl~~~----------~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l  158 (242)
T 3mxm_B           92 LEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAA  158 (242)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHH
T ss_pred             HHhcCCCchhHHHHHHHHHHHhcC----------CCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHH
Confidence            9998  8996 9999999999310          01289999995 999999963       22  23467888754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.62  E-value=6e-17  Score=121.44  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             HHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCC
Q 024455           32 EHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        32 ~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|.++  |.|+++ .|++||+.|.+.++|..|+     .++|.            |++|++.|.+.+.|..|+++|++++
T Consensus        12 h~~~~--h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~------------C~~C~k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A           12 HYELI--VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYP------------CRYCEKVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             EEEEE--ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEE------------CSSSSCEESSHHHHHHHHHHHHTCC
T ss_pred             hceee--cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCee------------CCccCeecccccchhhhccccCCCc
Confidence            34556  899999 9999999999999999999     34554            6678888999999999999999999


Q ss_pred             Ccc---ccccCcchhhhhhhccccccccccCCCceeeeeccccCCcCC
Q 024455          106 PVP---FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSN  150 (267)
Q Consensus       106 ~~~---C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~~g~~~~  150 (267)
                      ||.   |++.|.....|..|++.+++.....  ....+.|+.|+..+.
T Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~--~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSG--DSKLYRLHPCRSLQI  123 (133)
T ss_dssp             CEEESSSCCEESSHHHHHHHHHHHTCCCTTS--SSCCEEECCCCSSCC
T ss_pred             cccCCCCCCCcCCHHHHHHHhHHhcCCCCCC--CCCCeecCCCCchhh
Confidence            997   9999999999999998776533222  224577888886543

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*

Probab=99.61  E-value=2.3e-16  Score=133.56  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             CceeeeeccccCCc-CCCCccceeeEEEecCC-------------------CCeeEecccCCCCCccccccccccCCHHh
Q 024455          135 PKAVAMDCEMVGGG-SNGTLDLCARVCLVDED-------------------ENVIFHTYVQPQLPVTNYRYEVTGLTEED  194 (267)
Q Consensus       135 ~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~~-------------------~~~~~~~~v~P~~~i~~~~~~~~GIt~~~  194 (267)
                      ..++++|+|++|.. ..+++++|+.|.+.++.                   ....++++|+|..+|+...+++||||+++
T Consensus        12 ~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e~   91 (314)
T 3u3y_B           12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE   91 (314)
T ss_dssp             SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHHH
T ss_pred             CCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHHH
Confidence            45799999999987 45789999999887542                   33578999999999999999999999999


Q ss_pred             hccC--CCH-HHHHHHHHHHHhcCCCCCcccccCCCceEEEecc-chhhhccccc-------cC--CCCceecccc
Q 024455          195 IKNA--MPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM-------NY--PDHMLRDTAK  257 (267)
Q Consensus       195 l~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~Dl~~l~~-------~~--~~~~~~dt~~  257 (267)
                      |+++  |+| ++|+++|.+|+++.          +...+||||| +.||+.||+.       ..  .....+||..
T Consensus        92 l~~aG~P~f~~ev~~~l~~fL~~~----------~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~  157 (314)
T 3u3y_B           92 LEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA  157 (314)
T ss_dssp             HHHTTCCBSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred             HHhCCCCCcHHHHHHHHHHHHhcC----------CCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHH
Confidence            9999  899 79999999999320          0228999999 9999999963       22  2345778764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=107.87  Aligned_cols=86  Identities=23%  Similarity=0.473  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCcccccc--CccccCChHHHHHHHhHhcCCCCCC-Ccc--cchhhcCCHHHHHhhc-----CCCCCCCcCC
Q 024455            4 EAELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCS   73 (267)
Q Consensus         4 ~~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~   73 (267)
                      ++.+....+++|.|+.  |++.|.....|..|+++  |.++++ .|.  .|++.|.+...|..|+     .++|.     
T Consensus         5 ~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~-----   77 (100)
T 2ebt_A            5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT--HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ-----   77 (100)
T ss_dssp             CCCCCCCSCCCEECCSSSCCCEESCHHHHHHHHHH--HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCB-----
T ss_pred             CCCcccccCcceEcCCCCCCCcccCHHHHHHHHHH--hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeE-----
Confidence            3444556888999996  99999999999999999  998888 996  6999999999999998     34454     


Q ss_pred             cccccccccccccccCChhhHHHHHHHhcC
Q 024455           74 GIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        74 k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                             |+.|++.|...+.|..|+++|++
T Consensus        78 -------C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           78 -------CGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -------CSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             -------CCCCcCccCCHHHHHHHHHHhCC
Confidence                   66788899999999999999974

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=5.5e-16  Score=112.10  Aligned_cols=81  Identities=31%  Similarity=0.548  Sum_probs=72.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcC-----CCCCCCcCCccccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT-----GPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~-----~~~~C~~C~k~f~~~~C~   82 (267)
                      .+++++|.| .|++.|.+...|..|++.  |.++++ .|..|++.|.+...|..|+.     ++|            .|+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~   69 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY------------ECN   69 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCE------------ECS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHH--cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCe------------eCC
Confidence            468999999 999999999999999999  998888 99999999999999999982     233            377


Q ss_pred             ccccccCChhhHHHHHHHhcCC
Q 024455           83 LCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      .|++.|.....|..|+++|+..
T Consensus        70 ~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           70 ICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCcchhcCHHHHHHHHHHcccc
Confidence            8899999999999999999743

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5

Probab=99.60  E-value=1e-15  Score=126.17  Aligned_cols=115  Identities=21%  Similarity=0.195  Sum_probs=92.4

Q ss_pred             CCceeeeeccccCCcC-CCCccceeeEEEecC----------------CCCeeEecccCCCCCccccccccccCCHHhh-
Q 024455          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDE----------------DENVIFHTYVQPQLPVTNYRYEVTGLTEEDI-  195 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~----------------~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l-  195 (267)
                      ...++++|+||+|... ..++++++.+.+.++                .....|+.+|+|..+|+++.+++||||+++| 
T Consensus         9 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~   88 (238)
T 1y97_A            9 AETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLA   88 (238)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHH
T ss_pred             cCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHh
Confidence            3468999999999874 367889899888754                3345699999999999999999999999999 


Q ss_pred             -ccCCCH-HHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccccc-------cCC-CCceeccccc
Q 024455          196 -KNAMPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM-------NYP-DHMLRDTAKY  258 (267)
Q Consensus       196 -~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~-------~~~-~~~~~dt~~~  258 (267)
                       .++|+| ++|.+.|.+|+..          .+++.+|||||+ .||+.||+.       .+| ...++||..+
T Consensus        89 ~~~~p~f~~~v~~~l~~fl~~----------~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l  152 (238)
T 1y97_A           89 RCRKAGFDGAVVRTLQAFLSR----------QAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPA  152 (238)
T ss_dssp             HTTCCCSCHHHHHHHHHHHTT----------SCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHH
T ss_pred             hcCCCccHHHHHHHHHHHHHh----------CCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHH
Confidence             577999 5999999999931          012389999999 999999963       334 3568998643

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}

Probab=99.60  E-value=5.2e-16  Score=126.69  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=90.0

Q ss_pred             CceeeeeccccCCcCC---CCccceeeEEEecCCCCe--eEecccCCCC--CccccccccccCCHHhhccCCCHHHHHHH
Q 024455          135 PKAVAMDCEMVGGGSN---GTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~~---~~~~~i~~v~vvd~~~~~--~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v~~~  207 (267)
                      ..++++|+|++|....   .++++++.|.+.++.+..  .|+.+|+|..  +|+++.+++||||+++|++++++++|+++
T Consensus        31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~  110 (224)
T 2xri_A           31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER  110 (224)
T ss_dssp             SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred             CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence            4579999999998754   378888998888764544  4999999997  89999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCceEEEeccc--------hhhhcc-cc-------ccCCCC--ceeccc
Q 024455          208 ILEILNNGESTGRLMLDDGKARLLVGHGL--------EHDLDS-LR-------MNYPDH--MLRDTA  256 (267)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh~~--------~~Dl~~-l~-------~~~~~~--~~~dt~  256 (267)
                      |.+|+              ++.+|||||+        .||+.| |+       +..|..  .+||++
T Consensus       111 f~~~l--------------~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~  163 (224)
T 2xri_A          111 VDEWM--------------AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLK  163 (224)
T ss_dssp             HHHHH--------------HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHH
T ss_pred             HHHHH--------------hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHH
Confidence            99999              6678999999        999998 63       344432  678843

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=9.8e-16  Score=111.66  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC--Ccccchhhc--CCHHHHHhhc-----CCCCCCCcCCccccccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLS--KSFESLREHL-----TGPLSKAHCSGIFSDRG   80 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~--~C~~C~~~f--~~~~~l~~H~-----~~~~~C~~C~k~f~~~~   80 (267)
                      +++++|.|+.|++.|.+...|..|++++.|.+.++  .|+.|++.|  .....|..|+     .++|.            
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~------------   82 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK------------   82 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB------------
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE------------
Confidence            68899999999999999999999998722444444  699999999  8999999998     23443            


Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      |++|++.|...+.|..|+++|+......
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            6778889999999999999988766544

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}

Probab=99.59  E-value=4.6e-16  Score=134.47  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=94.2

Q ss_pred             CCceeeeeccccCCc-----CCCCccceeeEEEecCCCCe--eEecccCCCC--CccccccccccCCHHhhccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~-----~~~~~~~i~~v~vvd~~~~~--~~~~~v~P~~--~i~~~~~~~~GIt~~~l~~~~~~~~v  204 (267)
                      ...++++|+|++|..     ...++++|+.|.+.+..+.+  .|+++|+|..  +|+++.+.+||||+++|++++++.+|
T Consensus       127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV  206 (349)
T 1zbu_A          127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV  206 (349)
T ss_dssp             CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred             CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence            356799999999984     35678898999888655544  4999999998  89999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhc-cccc-------cCCCC--ceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLRM-------NYPDH--MLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~-~l~~-------~~~~~--~~~dt~~~~  259 (267)
                      +.+|.+||.+..-       ...+.+|||||+.||+. ||+.       ..|..  .++||..++
T Consensus       207 l~~f~~~l~~~~~-------~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~  264 (349)
T 1zbu_A          207 LKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY  264 (349)
T ss_dssp             HHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH
T ss_pred             HHHHHHHHhcccc-------cCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHH
Confidence            9999999953100       00125999999999999 9963       34432  578887543

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.59  E-value=4.1e-16  Score=100.00  Aligned_cols=51  Identities=25%  Similarity=0.460  Sum_probs=41.0

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      .||||+|++||+.|.+.+.|..|+++  |++++| .|++||+.|.+.++|..|+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRA--HLGYRPRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH--HHTCCCEECTTTCCEESSHHHHHHHG
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHH--hCCCcCeECCCCCCCcCCHHHHHHHh
Confidence            48999999999999999999999999  999877 6666665555555555554

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}

Probab=99.59  E-value=4.1e-16  Score=123.08  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=84.9

Q ss_pred             CCCceeeeeccccCCc-CCCCccceeeEEEecCCCCee---EecccCCCC----Ccccc---ccccccCCHHhhccCCCH
Q 024455          133 RGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENVI---FHTYVQPQL----PVTNY---RYEVTGLTEEDIKNAMPL  201 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~~~~~~---~~~~v~P~~----~i~~~---~~~~~GIt~~~l~~~~~~  201 (267)
                      ....++++|+||+|.+ ..++++++|.| +.++++..+   ++.+|+++.    .++++   ...+||||+++++++|++
T Consensus         7 ~~~~~v~~D~ETTGL~p~~d~IiEIgaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~   85 (186)
T 3tr8_A            7 SDDNLIWLDLEMTGLDPERDRIIEIATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDE   85 (186)
T ss_dssp             CTTCEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCH
T ss_pred             CCCcEEEEEEECCCCCCCCCceEEEEEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCH
Confidence            3457899999999998 44778899999 888766543   345586433    23445   445679999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccCC------CCceecc
Q 024455          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDT  255 (267)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~------~~~~~dt  255 (267)
                      ++|+++|++|+..    |  .+  .++.+|||||+.||+.||+..++      ...+||.
T Consensus        86 ~ev~~~~l~fl~~----~--~~--~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDv  137 (186)
T 3tr8_A           86 VEAETLTLAFLEK----Y--VS--AGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDV  137 (186)
T ss_dssp             HHHHHHHHHHHTT----T--SC--TTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEH
T ss_pred             HHHHHHHHHHHHH----h--cc--CCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeH
Confidence            9999999999931    0  11  14579999999999999986543      3467883

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.58  E-value=8.2e-16  Score=112.53  Aligned_cols=79  Identities=25%  Similarity=0.535  Sum_probs=71.7

Q ss_pred             CCCccccc--cCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      ++++|.|+  .|++.|.+...|..|+++  |.++++ .|+.|++.|.+...|..|+     .++|.|          .|+
T Consensus        33 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C----------~~~  100 (119)
T 2jp9_A           33 GEKPYQCDFKDCERRFSRSDQLKRHQRR--HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC----------RWP  100 (119)
T ss_dssp             TTCCEECCSTTCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEEC----------CST
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHH--cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeC----------CCC
Confidence            67899999  799999999999999999  999888 9999999999999999998     456665          247


Q ss_pred             ccccccCChhhHHHHHHHh
Q 024455           83 LCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h  101 (267)
                      .|++.|.+.+.|..|+++|
T Consensus       101 ~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          101 SCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TCCCEESSHHHHHHHHHTC
T ss_pred             CCccccCCHHHHHHHHhcC
Confidence            8999999999999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=1.7e-16  Score=110.26  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=70.1

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDS   90 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~   90 (267)
                      |+||.|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+...|..|+....     +.   ...|+.|++.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-----~~---~~~c~~C~~~f~~   70 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHRDIQH-----IL---PILEDKVEELLSK   70 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHCCCCEECTTTCCEESSHHHHHHHHHHHT-----HH---HHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--cCCCCCccCCCCCCccCCHHHHHHHHHHhC-----CC---cchHHHHHHHHHH
Confidence            6899999999999999999999999  999999 99999999999999999982111     01   1138899999999


Q ss_pred             hhhHHHHHHHhc
Q 024455           91 PSSLIKHKEACS  102 (267)
Q Consensus        91 ~~~L~~H~~~h~  102 (267)
                      ...|..|++.++
T Consensus        71 ~~~L~~H~~~~h   82 (88)
T 1llm_C           71 NYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHH
Confidence            999999998765

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A

Probab=99.55  E-value=9.1e-16  Score=130.80  Aligned_cols=111  Identities=20%  Similarity=0.238  Sum_probs=89.7

Q ss_pred             CceeeeeccccCCcCC-C---CccceeeEEEecCCCC--e--eEecccCCCCC--ccccccccccCCHHhhccCCCHHHH
Q 024455          135 PKAVAMDCEMVGGGSN-G---TLDLCARVCLVDEDEN--V--IFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       135 ~~~~~~dcE~~g~~~~-~---~~~~i~~v~vvd~~~~--~--~~~~~v~P~~~--i~~~~~~~~GIt~~~l~~~~~~~~v  204 (267)
                      ..++++|+|++|.+.. +   ++++++.|.+...++.  .  .|+++|+|...  |+++.+++||||+++|++++++++|
T Consensus        19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~ev   98 (308)
T 3cg7_A           19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVV   98 (308)
T ss_dssp             SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHHH
T ss_pred             CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHHHH
Confidence            4579999999998754 2   7888888877422333  3  58999999984  9999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccc------hhhh-cccc-------ccCCC--Cceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGL------EHDL-DSLR-------MNYPD--HMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~------~~Dl-~~l~-------~~~~~--~~~~dt~~~~  259 (267)
                      +.+|.+||              ++.+|||||+      .||+ .||+       +..|.  ..+|||..++
T Consensus        99 l~~f~~~l--------------~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~  155 (308)
T 3cg7_A           99 YEQFQQWL--------------ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIF  155 (308)
T ss_dssp             HHHHHHHH--------------HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHH
T ss_pred             HHHHHHHH--------------HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHH
Confidence            99999999              6678899999      9999 7985       34453  2578987543

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5

Probab=99.54  E-value=3.4e-15  Score=121.91  Aligned_cols=121  Identities=21%  Similarity=0.206  Sum_probs=91.0

Q ss_pred             CCceeeeeccccCCcCC-CCccceeeEEEe---cCCC--CeeEecccCC--CCCccccccccccCCHHh-hccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGGSN-GTLDLCARVCLV---DEDE--NVIFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~-~~~~~i~~v~vv---d~~~--~~~~~~~v~P--~~~i~~~~~~~~GIt~~~-l~~~~~~~~v  204 (267)
                      ...++++|+|++|.... .++++++.|.+.   ++..  ...|+.+|+|  ..+|+++.+++||||+++ +++++++++|
T Consensus        28 ~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v  107 (224)
T 2f96_A           28 GYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAA  107 (224)
T ss_dssp             TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHH
T ss_pred             CCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence            34579999999998754 678888888887   3332  2468999999  578999999999999985 8999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC--------C--CCceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--------P--DHMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~--------~--~~~~~dt~~~~  259 (267)
                      +.+|+++|.+.    .. ..-.++.+|||||+.||+.||+..+        |  ...+|||..+.
T Consensus       108 ~~~~~~~l~~~----~~-~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~  167 (224)
T 2f96_A          108 LTEIFRGIRKA----LK-ANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLA  167 (224)
T ss_dssp             HHHHHHHHHHH----HH-HTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHH
T ss_pred             HHHHHHHHHHH----hh-hcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHH
Confidence            99999998310    00 0000268999999999999996321        2  34688987543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.53  E-value=5.9e-15  Score=102.24  Aligned_cols=78  Identities=27%  Similarity=0.538  Sum_probs=67.9

Q ss_pred             CCCcccccc--CccccCChHHHHHHHhHhcCCCCCC-Ccc--cchhhcCCHHHHHhhc-----CCCCCCCcCCccccccc
Q 024455           11 STARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG   80 (267)
Q Consensus        11 ~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~   80 (267)
                      ++++|.|+.  |++.|.....|..|+++  |.++++ .|+  .|++.|.+...|..|+     .++|.            
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------------   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ------------   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE------------
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc------------
Confidence            467899999  99999999999999999  999888 997  6999999999999998     33444            


Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |+.|++.|...+.|..|+++|.
T Consensus        68 C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           68 CQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCCCcccCCHHHHHHHHHhhC
Confidence            6678888999999999999883

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.3e-14  Score=106.81  Aligned_cols=83  Identities=28%  Similarity=0.452  Sum_probs=70.1

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHh-cCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCccccccccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKIS-YHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~-~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (267)
                      .++++|.|+.|++.|.+...|..|++.+ .|.++++ .|+.|++.|.+...|..|+     .++|.            |+
T Consensus        31 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   98 (124)
T 2dlq_A           31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK------------CS   98 (124)
T ss_dssp             SSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEE------------CS
T ss_pred             CCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcc------------CC
Confidence            4678999999999999999999999862 1466777 9999999999999999999     33444            67


Q ss_pred             ccccccCChhhHHHHHHH-hcCC
Q 024455           83 LCMNIFDSPSSLIKHKEA-CSLS  104 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~-h~~~  104 (267)
                      .|++.|.+.+.|..|++. |.++
T Consensus        99 ~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           99 SCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CccchhCCHHHHHHHHHHHCCCC
Confidence            788899999999999985 6554

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A

Probab=99.50  E-value=8.7e-15  Score=120.32  Aligned_cols=121  Identities=19%  Similarity=0.206  Sum_probs=91.1

Q ss_pred             CCceeeeeccccCCc-CCCCccceeeEEEe---cCC--CCeeEecccCC--CCCccccccccccCCHH-hhccCCCHHHH
Q 024455          134 GPKAVAMDCEMVGGG-SNGTLDLCARVCLV---DED--ENVIFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPLKEV  204 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~-~~~~~~~i~~v~vv---d~~--~~~~~~~~v~P--~~~i~~~~~~~~GIt~~-~l~~~~~~~~v  204 (267)
                      ...++++|+|++|.. ...++++++.+.+.   ++.  ....|+.+|+|  ..+++++.+++||||++ ++++++++++|
T Consensus        36 ~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~v  115 (235)
T 3v9w_A           36 GFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEA  115 (235)
T ss_dssp             TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHH
T ss_pred             CCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence            446799999999986 44678888888875   333  23568899999  57899999999999999 99999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC--------C--CCceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--------P--DHMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~--------~--~~~~~dt~~~~  259 (267)
                      +.+|.+++.+.    .. ....++.+|||||+.||+.||+..+        |  ...++||..+.
T Consensus       116 l~~~~~~l~~~----~~-~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la  175 (235)
T 3v9w_A          116 LHEIFKVVRKG----IK-ASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALA  175 (235)
T ss_dssp             HHHHHHHHHHH----HT-TTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHH
T ss_pred             HHHHHHHHHHH----hh-hccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHH
Confidence            99999999310    00 0000368999999999999995321        1  23578887543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.5e-14  Score=96.85  Aligned_cols=66  Identities=21%  Similarity=0.307  Sum_probs=58.9

Q ss_pred             CCCCcccccc--CccccCChHHHHHHHh-HhcCCCCCC-Cccc--chhhcCCHHHHHhhc-----CCCCCCCcCCcccc
Q 024455           10 RSTARHKCVA--CYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFS   77 (267)
Q Consensus        10 ~~~k~~~C~~--C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~   77 (267)
                      +++++|.|+.  |++.|.+...|..|++ .  |+++++ .|+.  |++.|.+..+|..|+     .++|.|+.|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~--H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ--HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHG--GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHH--hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5889999986  9999999999999999 7  998888 9998  999999999999998     56888888888773

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=9.7e-16  Score=111.69  Aligned_cols=94  Identities=10%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             hHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcC--CCCCCCcCCccccccccccccccc--CChhhHHHHHHHh
Q 024455           27 KDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT--GPLSKAHCSGIFSDRGCNLCMNIF--DSPSSLIKHKEAC  101 (267)
Q Consensus        27 ~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~--~~~~C~~C~k~f~~~~C~~C~~~F--~~~~~L~~H~~~h  101 (267)
                      .+.|..|+++  |+++++ .|+.|++.|.+...|..|+.  +.+.+...      ..|+.|++.|  .....|..|+++|
T Consensus         4 ~~~l~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~------~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            4 GSSGKLYGSI--FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH------ETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCCCCC--CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC------CCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             chhhhhheee--eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC------ccCCCCCcccccccHHHHHHHhhcc
Confidence            4567889999  999999 99999999999999999983  23333211      1288899988  8999999999999


Q ss_pred             cCCCCcc---ccccCcchhhhhhhcccccc
Q 024455          102 SLSAPVP---FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus       102 ~~~~~~~---C~~~f~~~~~l~~H~~~~~~  128 (267)
                      ++++||.   |++.|.....|+.|++.++.
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            9999997   99999999999999976554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=2.1e-14  Score=98.37  Aligned_cols=74  Identities=27%  Similarity=0.501  Sum_probs=67.2

Q ss_pred             cccc--ccCccccCChHHHHHHHhHhcCCCCCC-Cccc--chhhcCCHHHHHhhc---CCCCCCCcCCcccccccccc--
Q 024455           14 RHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL--   83 (267)
Q Consensus        14 ~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~--   83 (267)
                      ||.|  +.|++.|.....|..|+++  |.++++ .|+.  |++.|.+...|..|+   .+ |.            |+.  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~------------C~~~~   65 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS--HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YP------------CKKDD   65 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EE------------CCSCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH--hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CC------------CCCCC
Confidence            6899  9999999999999999999  999999 9988  999999999999999   33 44            555  


Q ss_pred             -cccccCChhhHHHHHHHhc
Q 024455           84 -CMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        84 -C~~~F~~~~~L~~H~~~h~  102 (267)
                       |++.|...+.|..|+++|+
T Consensus        66 ~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           66 SCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCccCCHHHHHHHHHhcC
Confidence             8999999999999999985

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.46  E-value=9.7e-14  Score=106.35  Aligned_cols=109  Identities=16%  Similarity=0.215  Sum_probs=82.7

Q ss_pred             CCCCC-CcccchhhcCCHHHHHhhcC------CCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc----
Q 024455           40 SVHQP-KCAVCQKLSKSFESLREHLT------GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP----  108 (267)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~~------~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~----  108 (267)
                      ..... .|..|++.|.+...|..|+.      .+.....|.    ...|+.|++.|.....|..|+++|+++++|.    
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~   96 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY----WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP   96 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC----BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCT
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc----ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcC
Confidence            33445 99999999999999999982      122222221    1249999999999999999999999999985    


Q ss_pred             -ccccCcchhhhhhhccccccccccCCCceeeeeccc--cCCcCCCCccceeeEE
Q 024455          109 -FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEM--VGGGSNGTLDLCARVC  160 (267)
Q Consensus       109 -C~~~f~~~~~l~~H~~~~~~~r~~~~~~~~~~dcE~--~g~~~~~~~~~i~~v~  160 (267)
                       |++.|.....|..|+..+.+.        ..+.|+.  |+..+.....+..++.
T Consensus        97 ~C~~~f~~~~~L~~H~~~h~~~--------~~~~C~~~~C~k~f~~~~~L~~H~~  143 (155)
T 2rpc_A           97 GCGKIFARSENLKIHKRTHTGE--------KPFKCEFEGCDRRFANSSDRKKHMH  143 (155)
T ss_dssp             TTCCEESCHHHHHHHHTTTCSS--------CSBCCSSTTCCCCBSSHHHHHHSST
T ss_pred             CCCCccCCHHHHHHHHHhhCCC--------CCccCCCCCCCCccCCHHHHHHHHH
Confidence             788999999999999766542        3477886  9988776655544443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.42  E-value=2.5e-13  Score=95.33  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=69.0

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---c
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---F  109 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C  109 (267)
                      +.++++ .|..|++.|.+...|..|+     .++|            .|+.|++.|.....|..|+++|+++++|.   |
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   70 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPY------------KCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSE------------ECSSSCCEESSHHHHHHHHHHSCCCCCEECSSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCE------------eCCCCCCccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            566778 9999999999999999998     2233            37778899999999999999999999996   8


Q ss_pred             cccCcchhhhhhhccccccc
Q 024455          110 EKTLSNAESQKKISGAIDEK  129 (267)
Q Consensus       110 ~~~f~~~~~l~~H~~~~~~~  129 (267)
                      ++.|.....|..|++.+.+.
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           71 PYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             SCEESSHHHHHHHHTTCCSC
T ss_pred             CCccCCHHHHHHHHHHhcCC
Confidence            99999999999999877654

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*

Probab=99.42  E-value=1.3e-13  Score=123.69  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             CCceeeeeccccCCcCC-CCccceeeEEEecCCCCee---EecccCCCCCc--cccccccccCCHHhhccCCC-HHHHHH
Q 024455          134 GPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENVI---FHTYVQPQLPV--TNYRYEVTGLTEEDIKNAMP-LKEVKD  206 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~~---~~~~v~P~~~i--~~~~~~~~GIt~~~l~~~~~-~~~v~~  206 (267)
                      ...++++|+||+|.+.. ++++++|.|.+. .++.++   ++.+|+|..++  .+..+.+||||+++|.+++. +.+|+.
T Consensus         8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~   86 (482)
T 2qxf_A            8 QSTFLFHDYETFGTHPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA   86 (482)
T ss_dssp             CCEEEEEEEEESSSCTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHH
Confidence            44689999999998744 678888888765 333333   99999999887  56778999999999998764 599999


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEecc-chhhhccccc
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM  245 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~Dl~~l~~  245 (267)
                      +|.++++.            .|.+||||| +.||+.||+.
T Consensus        87 ~f~~~l~~------------~~~~lVaHNs~~FD~~fL~~  114 (482)
T 2qxf_A           87 RIHSLFTV------------PKTCILGYNNVRFDDEVTRN  114 (482)
T ss_dssp             HHHHHHTS------------TTEEEEESSTTTTHHHHHHH
T ss_pred             HHHHHHcC------------CCCEEEEECCHHHHHHHHHH
Confidence            99999921            278999999 9999999964

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=6.6e-14  Score=99.61  Aligned_cols=71  Identities=15%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHh-HhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~   87 (267)
                      ++|++||.|+.|++.|.+++.|..|++ +  |++..                   ..++|.            |++||+.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~--H~~~~-------------------~ekpf~------------C~~Cgk~   59 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSE--HPNVV-------------------LNSSYV------------CVECNFL   59 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHH--CSSCC-------------------CSCCEE------------ETTTTEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhh--CCCCC-------------------CCCCcC------------CCCCCcc
Confidence            689999999999999999999999997 6  84310                   012333            5556677


Q ss_pred             cCChhhHHHH-HHHhcCCCCcccccc
Q 024455           88 FDSPSSLIKH-KEACSLSAPVPFEKT  112 (267)
Q Consensus        88 F~~~~~L~~H-~~~h~~~~~~~C~~~  112 (267)
                      |..++.|..| +++|++++||.|...
T Consensus        60 F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           60 TKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             ESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            7777788888 678888888887653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=3.7e-13  Score=90.67  Aligned_cols=65  Identities=31%  Similarity=0.518  Sum_probs=48.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCccccccccccccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIF   88 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F   88 (267)
                      .+++++|.|+.|++.|.....|..|+++  |+++++                      |.            |++|++.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~----------------------~~------------C~~C~~~f   56 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRT--HTGEKP----------------------YK------------CDECGKAF   56 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCSCS----------------------EE------------CSSSCCEE
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHH--cCCCcC----------------------ee------------CCCCCCcc
Confidence            5688999999999999999999999999  887654                      22            33455555


Q ss_pred             CChhhHHHHHHHhcCCCCccc
Q 024455           89 DSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        89 ~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      .....|..|+++|++++||.|
T Consensus        57 ~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           57 IQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCHHHHHHHHHHhCCCCCCCC
Confidence            566666666666666666665

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.39  E-value=1.1e-13  Score=88.50  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             CCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCC
Q 024455           42 HQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        42 ~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |+| .|++||+.|.+.++|..|+     .++|.            |++||+.|.+.++|..|+++|+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~------------C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRS------------CPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEE------------CTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeE------------CCCCCCCcCCHHHHHHHhCccCCC
Confidence            455 6666666666666666666     23333            445555666666666666666655

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.1e-13  Score=97.91  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             HHhHhcCCCCCC-CcccchhhcCCHHHHHhhc---CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      +++.  |+++++ .|.+|++.|.+...|..|+   .++|.            |+.|++.|.....|..|++ |+++++|.
T Consensus         7 ~~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~------------C~~C~~~f~~~~~l~~H~~-H~~~~~~~   71 (107)
T 1wjp_A            7 GASP--VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV------------CPYCSLRFFSPELKQEHES-KCEYKKLT   71 (107)
T ss_dssp             CCCC--CCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBC------------CTTTCCCBSSHHHHHHHHH-HCSTGGGE
T ss_pred             cCcc--cCCCcCeECCCCCCccCCHHHHHHHHHHCCCCcc------------CCCCCCccCCHHHHHHHHH-cCCCCCcc
Confidence            3456  889998 9999999999999999998   34554            6678889999999999996 99999997


Q ss_pred             ---ccccCcchhhhhhhcc-cccc
Q 024455          109 ---FEKTLSNAESQKKISG-AIDE  128 (267)
Q Consensus       109 ---C~~~f~~~~~l~~H~~-~~~~  128 (267)
                         |++.|.....|+.|++ .+.+
T Consensus        72 C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           72 CLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             EGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CccccchhCCHHHHHHHHHHHcCC
Confidence               8999999999999996 4443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.36  E-value=1.1e-12  Score=93.83  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             CCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---cc
Q 024455           40 SVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (267)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~  110 (267)
                      ..+++ .|..|++.|.+...|..|+     .++|.            |+.|++.|.....|..|+++|+++++|.   |+
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   80 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT------------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG   80 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCB------------CSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcC------------CCCccchhCCHHHHHHHHHHhCCCCCeECCCcC
Confidence            34556 9999999999999999998     34454            6678888999999999999999999997   89


Q ss_pred             ccCcchhhhhhhccccccc
Q 024455          111 KTLSNAESQKKISGAIDEK  129 (267)
Q Consensus       111 ~~f~~~~~l~~H~~~~~~~  129 (267)
                      +.|.....|..|++.+.+.
T Consensus        81 ~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           81 KGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCCSSHHHHHHHHHHTTSC
T ss_pred             CcccCHHHHHHHHHHhCCC
Confidence            9999999999999777653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=7.8e-13  Score=88.35  Aligned_cols=64  Identities=30%  Similarity=0.562  Sum_probs=50.7

Q ss_pred             CCCCCCccccccCccccCChHHHHHHHhHhcCCCCCCCcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccc
Q 024455            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (267)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~   87 (267)
                      ..+++++|+|+.|++.|.....|..|+++  |+++++                      |.            |+.|++.
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~----------------------~~------------C~~C~k~   54 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTV--HTGEKP----------------------YR------------CNICGAQ   54 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--HCCCCS----------------------EE------------CTTTCCE
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHH--cCCCCC----------------------EE------------CCCCCch
Confidence            35689999999999999999999999999  876543                      32            4456666


Q ss_pred             cCChhhHHHHHHHhcCCCCc
Q 024455           88 FDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        88 F~~~~~L~~H~~~h~~~~~~  107 (267)
                      |...+.|..|+++|++++||
T Consensus        55 f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           55 FNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             ESCHHHHHHHHHHHCCSCCC
T ss_pred             hCCHHHHHHHHHhcCCCCCC
Confidence            77777777888888888775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=7.6e-13  Score=90.85  Aligned_cols=53  Identities=25%  Similarity=0.419  Sum_probs=47.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      .+++++|.|++|++.|.++..|..|+++  |++++| .|++|++.|.+..+|.+|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRL--LHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHT--TSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhh--ccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            3578899999999999999999999999  999888 8888888888888888886

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.2e-12  Score=86.35  Aligned_cols=52  Identities=31%  Similarity=0.496  Sum_probs=37.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhh
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (267)
                      .+++++|.|+.|++.|.....|..|+++  |+++++ .|+.|++.|.+...|..|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~~~f~~~~~L~~H   56 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI--HCTDRPFKCNYCSFDTKQPSNLSKH   56 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSCSEECSSSSCEESSHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCEeCCCCCCccCCHHHHHHH
Confidence            5689999999999999999999999999  887655 444444444443333333

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.33  E-value=4.8e-13  Score=84.49  Aligned_cols=51  Identities=31%  Similarity=0.587  Sum_probs=41.4

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      |+++|.|+.|++.|.+...|..|+++  |+++++ .|+.|++.|.+...|..|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   52 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRT--HTGEKPYKCEFCEYAAAQKTSLRYHL   52 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHH--HHCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHH--cCCCCCcCCCCCcchhCCHHHHHHHH
Confidence            57899999999999999999999999  988877 8888877777777777775

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.32  E-value=4.7e-13  Score=90.98  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=62.2

Q ss_pred             CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---ccccCcch
Q 024455           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNA  116 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~  116 (267)
                      .|+.|++.|.+...|..|+     .++|.            |+.|++.|.....|..|+++|+++++|.   |++.|...
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   70 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLIHSDTRPYP------------CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS   70 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTCCCEE------------CSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSH
T ss_pred             cCCCCcccccCchhHHHHHHHcCCCCCee------------CCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCCh
Confidence            7999999999999999998     34444            6678888999999999999999999997   89999999


Q ss_pred             hhhhhhcccc
Q 024455          117 ESQKKISGAI  126 (267)
Q Consensus       117 ~~l~~H~~~~  126 (267)
                      ..|..|++.+
T Consensus        71 ~~l~~H~~~H   80 (82)
T 2kmk_A           71 SNLITHSRKH   80 (82)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=1.8e-12  Score=88.92  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             CCCCccccccCccccCChHHHHHHHhH
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +++++|.|+.|++.|.....|..|++.
T Consensus        11 ~~~k~~~C~~C~~~f~~~~~l~~H~~~   37 (86)
T 1x6h_A           11 TGEKPYACSHCDKTFRQKQLLDMHFKR   37 (86)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCCCCCcCCCCCCccCCHHHHHHHHHH
Confidence            355666666666666666666666655

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.32  E-value=7.8e-13  Score=91.56  Aligned_cols=75  Identities=20%  Similarity=0.472  Sum_probs=64.7

Q ss_pred             CCC-Ccc--cchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---cc
Q 024455           42 HQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (267)
Q Consensus        42 ~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~  110 (267)
                      +++ .|+  .|++.|.+...|..|+     .++|.            |+.|++.|.+...|..|+++|+++++|.   |+
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   69 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ------------CRICMRNFSRSDHLTTHIRTHTGEKPFACDICG   69 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEE------------CTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCcc------------CCCCCcccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            466 898  6999999999999998     33444            6778889999999999999999999997   89


Q ss_pred             ccCcchhhhhhhcccccc
Q 024455          111 KTLSNAESQKKISGAIDE  128 (267)
Q Consensus       111 ~~f~~~~~l~~H~~~~~~  128 (267)
                      +.|.....|..|++.+.+
T Consensus        70 ~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           70 RKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             CEESSHHHHHHHHGGGGC
T ss_pred             chhCCHHHHHHHHHHhcc
Confidence            999999999999977654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=6.7e-13  Score=95.65  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---c
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---F  109 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C  109 (267)
                      |+++++ .| .|++.|.+...|..|+     .++|.            |+.|++.|.....|..|+++|+++++|.   |
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYG------------CGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEE------------CTTTSCEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCcc------------CCCCCcccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            899999 99 9999999999999998     23443            6778889999999999999999999996   8


Q ss_pred             cccCcchhhhhhhcccccc
Q 024455          110 EKTLSNAESQKKISGAIDE  128 (267)
Q Consensus       110 ~~~f~~~~~l~~H~~~~~~  128 (267)
                      ++.|.....|..|++.+..
T Consensus        72 ~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           72 AKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CCEESCHHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHccc
Confidence            9999999999999976543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.2e-13  Score=94.89  Aligned_cols=72  Identities=18%  Similarity=0.329  Sum_probs=58.6

Q ss_pred             ccCChHHHHHHHhHhcCCCCCC-CcccchhhcC-CHHHHHhhc---C---CCCCCCcCCcccccccccccccccCChhhH
Q 024455           23 QFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSK-SFESLREHL---T---GPLSKAHCSGIFSDRGCNLCMNIFDSPSSL   94 (267)
Q Consensus        23 ~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~-~~~~l~~H~---~---~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L   94 (267)
                      .+.....+..|+++  |+++++ .|.+|++.|. +...|..|+   .   ++|.            |++|++.|.....|
T Consensus         5 s~~~~~~~~~h~~~--h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~------------C~~C~k~F~~~~~L   70 (98)
T 2gqj_A            5 SSGPGGPEEQWQRA--IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALK------------CQHCRKQFKSKAGL   70 (98)
T ss_dssp             CCCCCCSCSHHHHT--TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHS------------CSSSCCCCSCHHHH
T ss_pred             CCCCCCcHHHHHHH--hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEE------------CCCCCCccCCHHHH
Confidence            34455667788888  888888 9999999999 899999988   2   2444            66788899999999


Q ss_pred             HHHHHHhcCCCCcc
Q 024455           95 IKHKEACSLSAPVP  108 (267)
Q Consensus        95 ~~H~~~h~~~~~~~  108 (267)
                      ..|+++|++++|..
T Consensus        71 ~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           71 NYHTMAEHSAKPSD   84 (98)
T ss_dssp             HHHHHHHSCSCSSC
T ss_pred             HHHHHHHcCCCCCC
Confidence            99999999999864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.29  E-value=3.1e-13  Score=100.35  Aligned_cols=101  Identities=17%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCC---CCCC-CcccchhhcC------CHHHHHhhc----CCCCCCCcCCcc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHS---VHQP-KCAVCQKLSK------SFESLREHL----TGPLSKAHCSGI   75 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~---~~~~-~C~~C~~~f~------~~~~l~~H~----~~~~~C~~C~k~   75 (267)
                      +|.|+|.|..++-..  ...+..|.+.  |.   .++. .|++|++.|.      ....|..|+    .++|.       
T Consensus         8 ~~~k~~~~~~k~~~~--~~s~ee~~~~--~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~-------   76 (129)
T 2wbt_A            8 SGSKKYLSNHKGIFI--HVTLEELKRY--HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFV-------   76 (129)
T ss_dssp             TTCCGGGGCSSCEEE--ECCHHHHHHH--TTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEE-------
T ss_pred             ccccccccccCCeee--eecHHhhhcc--ccCChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeE-------
Confidence            477888776544322  1223334333  22   1223 6777766654      566676666    44554       


Q ss_pred             cccccccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcccccc
Q 024455           76 FSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus        76 f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~  128 (267)
                           |++||+.|...+.|..|+++|  ++||.   |++.|.....|..|++.+++
T Consensus        77 -----C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           77 -----CPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             -----CTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             -----CCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence                 455677777778888888887  77776   77888888888888765544

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.28  E-value=3.2e-12  Score=89.39  Aligned_cols=74  Identities=22%  Similarity=0.319  Sum_probs=64.5

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCC--CCcc--
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS--APVP--  108 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~--~~~~--  108 (267)
                      .+++++ .|..|++.|.+...|..|+     .++|.            |+.|++.|.....|..|+++|+++  ++|.  
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS------------CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEE------------CSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCc------------CCCCCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            356777 9999999999999999998     23343            677888999999999999999987  8886  


Q ss_pred             -ccccCcchhhhhhhcc
Q 024455          109 -FEKTLSNAESQKKISG  124 (267)
Q Consensus       109 -C~~~f~~~~~l~~H~~  124 (267)
                       |++.|.....|..|++
T Consensus        70 ~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSCCCBSSHHHHHHHHH
T ss_pred             CccchhCCHHHHHHHHH
Confidence             8999999999999985

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=9.1e-13  Score=90.42  Aligned_cols=78  Identities=18%  Similarity=0.307  Sum_probs=59.4

Q ss_pred             HHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCc
Q 024455           29 HLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        29 ~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~  107 (267)
                      +|..|+++  |+++++ .|..|++.|.+...|..|+.....-..-.+.   ..|+.|++.|.....|..|+++|++++++
T Consensus         2 s~~~H~~~--H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~---~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            2 SSGSSGRT--HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA---FVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TTTCCSTT--CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC---EECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             Ccccccce--ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc---eECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            45678999  999999 9999999999999999998100000000001   13778899999999999999999999998


Q ss_pred             cccc
Q 024455          108 PFEK  111 (267)
Q Consensus       108 ~C~~  111 (267)
                      .|..
T Consensus        77 ~~~~   80 (86)
T 1x6h_A           77 EGEN   80 (86)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            8543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=2.7e-12  Score=85.23  Aligned_cols=52  Identities=31%  Similarity=0.594  Sum_probs=37.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhh
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (267)
                      .+++++|.|+.|++.|.....|..|+++  |.++++ .|++|++.|.+...|..|
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~~~C~~C~~~f~~~~~L~~H   61 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRV--HTGEKPYKCLECGKAFSQNSGLINH   61 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG--GGCSCCEECSSSCCEESSHHHHHHH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHh--cCCCCCeECCCCCcccCCHHHHHHH
Confidence            3688999999999999999999999998  877655 444444444444444444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=3e-12  Score=86.16  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~  128 (267)
                      |++|++.|.....|..|+++|+++++|.   |++.|.....|..|+..+.+
T Consensus        21 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            6778889999999999999999999996   89999999999999977654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-11  Score=85.82  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=55.2

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChh
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPS   92 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~   92 (267)
                      .|.|+.|++.|.....|..|++++ |+++++ .+..|.               .|            .|+.|++.|...+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~-H~~~~~~~~~~c~---------------~~------------~C~~C~k~f~~~~   76 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCY---------------WE------------ECPREGKSFKAKY   76 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHT-TTCCTTCSCCCCC---------------CT------------TCSSTTCCCSSHH
T ss_pred             CCcccccccccCCHHHHHHHHHHh-ccCCCCCCcccee---------------cc------------CCCCCCcccCCHH
Confidence            467999999999999999999863 776655 333331               12            3788999999999


Q ss_pred             hHHHHHHHhcCCCCcccc
Q 024455           93 SLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        93 ~L~~H~~~h~~~~~~~C~  110 (267)
                      .|..|+++|++++||.|.
T Consensus        77 ~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           77 KLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHTCCCCSSC
T ss_pred             HHHHHHHhcCCCCCCCCC
Confidence            999999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=2.9e-12  Score=83.48  Aligned_cols=53  Identities=17%  Similarity=0.397  Sum_probs=40.8

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcC-CCCCC-CcccchhhcCCHHHHHhhc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYH-SVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H-~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      ++++||.|+.|++.|.+...|..|++++ | +++++ .|+.|++.|.+.+.|..|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~~~~~C~~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTS-HKRNVKVYPCPFCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHH-SSSSCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHH-cCCCCcCeECCCCCCccCCHHHHHHHH
Confidence            5789999999999999999999999873 5 56666 6666666666666666664

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=4.7e-12  Score=80.79  Aligned_cols=49  Identities=27%  Similarity=0.631  Sum_probs=44.1

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      +||.|+.|++.|.+...|..|+++  |+++++ .|+.|++.|.+...|..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--hCCCCCccCCCCCCccCCHHHHHHHH
Confidence            589999999999999999999999  998888 8888888888888888885

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.24  E-value=8.2e-12  Score=83.28  Aligned_cols=48  Identities=17%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhcccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~~~~  128 (267)
                      |+.|++.|...+.|..|+++|+++++|.   |++.|.....|..|++.+.+
T Consensus        20 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            6778899999999999999999999997   89999999999999977654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=5.8e-12  Score=88.69  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=60.0

Q ss_pred             cccCChHHHHHHHhHhcCCCCCC-Ccccchhhc-CCHHHHHhhc----CCCCCCCcCCcccccccccccccccCChhhHH
Q 024455           22 KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS-KSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (267)
Q Consensus        22 k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f-~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~   95 (267)
                      ..|.....|..|++.  |.++++ .|+.|++.| .+..+|..|+    .++|.            |++||+.|...+.|.
T Consensus        14 ~~~~~~~~~~~~~~~--~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~------------C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLE--IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFT------------CHHCGKQLRSLAGMK   79 (96)
T ss_dssp             CSSCTTCHHHHHHHH--HHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCC------------CSSSCCCCSSHHHHH
T ss_pred             CCCCCchHHHHHHHH--hcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeE------------CCCCCCeeCCHHHHH
Confidence            356778889999999  888888 999999999 9999999998    34444            677888899999999


Q ss_pred             HH-HHHhcCCCCcc
Q 024455           96 KH-KEACSLSAPVP  108 (267)
Q Consensus        96 ~H-~~~h~~~~~~~  108 (267)
                      .| +++|+++..++
T Consensus        80 ~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           80 YHVMANHNSLPSGP   93 (96)
T ss_dssp             HHHHHHTCCCSSCS
T ss_pred             HHhHHhcCCCCCCC
Confidence            99 88997654433

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.4e-12  Score=86.03  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      +++++|.|+.|++.|.....|..|+++  |.+
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~   32 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRK--HAE   32 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHH--HHH
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHH--hhc
Confidence            588999999999999999999999998  764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.21  E-value=8.2e-12  Score=86.13  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             Cccc--chhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---ccccCc
Q 024455           45 KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLS  114 (267)
Q Consensus        45 ~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~  114 (267)
                      .|+.  |++.|.+...|..|+     .++|.|+          .+.|++.|.....|..|+++|+++++|.   |++.|.
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD----------WDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHTTSCSSCCEECC----------STTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCC----------CCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            8998  999999999999998     2344441          1368999999999999999999999997   899999


Q ss_pred             chhhhhhhcccc
Q 024455          115 NAESQKKISGAI  126 (267)
Q Consensus       115 ~~~~l~~H~~~~  126 (267)
                      ....|..|++.+
T Consensus        77 ~~~~l~~H~~~H   88 (89)
T 2wbs_A           77 RSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhh
Confidence            999999998643

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.20  E-value=1.1e-11  Score=78.19  Aligned_cols=48  Identities=25%  Similarity=0.528  Sum_probs=38.8

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      ||.|+.|++.|.+...|..|+++  |+++++ .|+.|++.|.+..+|..|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   49 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--HTDVRPYHCTYCNFSFKTKGNLTKHM   49 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--cCCCCCccCCCCCchhcCHHHHHHHH
Confidence            68999999999999999999999  988776 6666666666666666665

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.20  E-value=1.2e-11  Score=87.19  Aligned_cols=75  Identities=17%  Similarity=0.272  Sum_probs=64.0

Q ss_pred             CCC-Cccc--chhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---cc
Q 024455           42 HQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FE  110 (267)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~  110 (267)
                      .++ .|..  |++.|.....|..|+     .++|.|.          ++.|++.|.....|..|+++|+++++|.   |+
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCT----------WEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECC----------SSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCC----------CCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            344 8886  999999999999998     3456552          2468899999999999999999999997   89


Q ss_pred             ccCcchhhhhhhcccc
Q 024455          111 KTLSNAESQKKISGAI  126 (267)
Q Consensus       111 ~~f~~~~~l~~H~~~~  126 (267)
                      +.|.....|..|++.+
T Consensus        83 ~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           83 RSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CBCSSHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHh
Confidence            9999999999998654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.2e-11  Score=81.50  Aligned_cols=58  Identities=33%  Similarity=0.485  Sum_probs=50.4

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      |+++++ .|+.|++.|.+...|..|+     .++|.            |+.|++.|.....|..|+++|++++|.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~------------C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFK------------CNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEE------------CSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEe------------CCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            788888 9999999999999999998     23343            6778889999999999999999998854

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.17  E-value=2.2e-11  Score=76.09  Aligned_cols=46  Identities=35%  Similarity=0.574  Sum_probs=42.3

Q ss_pred             CCCCCCccccccCccccCChHHHHHHHh-HhcCCCCCC-CcccchhhcCC
Q 024455            8 PKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVCQKLSKS   55 (267)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~C~~~f~~   55 (267)
                      +.+++++|.|+.|++.|.....|..|++ +  |+++++ .|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHh--cCCCCCccCCCCCCCCCC
Confidence            3568999999999999999999999997 7  999998 99999999976

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.8e-11  Score=82.24  Aligned_cols=26  Identities=15%  Similarity=0.404  Sum_probs=17.6

Q ss_pred             CCCCccccccCccccCChHHHHHHHh
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMK   35 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~   35 (267)
                      ++++||.|+.|++.|.+...|..|++
T Consensus        11 ~~~k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           11 SGEKPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCCCeECCCcCchhCCHHHHHHHHH
Confidence            45666777777777777777777765

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=1.4e-11  Score=86.64  Aligned_cols=50  Identities=22%  Similarity=0.409  Sum_probs=47.6

Q ss_pred             CCCccccccCcccc-CChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhh-c
Q 024455           11 STARHKCVACYKQF-KRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-L   63 (267)
Q Consensus        11 ~~k~~~C~~C~k~f-~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H-~   63 (267)
                      ++++|.|+.|++.| .++..|..|+++  | ++++ .|.+||+.|.+.+.|..| +
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~--h-~~k~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMEN--C-KQEMFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHH--H-CCCCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHH--H-CCCCeECCCCCCeeCCHHHHHHHhH
Confidence            47889999999999 999999999999  9 8888 999999999999999999 6

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=8.2e-14  Score=92.61  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             hHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhcCCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCC
Q 024455           27 KDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        27 ~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      +..|..|+++  |+++++ .|+.||+.|.+.+.|..  .++|.            |+.||+.|...+.|..|+++|++++
T Consensus         3 ~~~l~~H~~~--h~~~~~~~C~~C~k~f~~~~~l~~--~~~~~------------C~~C~~~f~~~~~l~~H~~~H~~~~   66 (73)
T 2ctu_A            3 SGSSGKRQKI--HLGDRSQKCSKCGIIFIRRSTLSR--RKTPM------------CEKCRKDSCQEAALNKDEGNESGKK   66 (73)
T ss_dssp             CCSCCCCCCC--CCCCSEEECSSSCCEEECCCCCCC--SSSCC------------CHHHHHTCSCCCSSCCCSSCCCCCC
T ss_pred             chhHHHHHHH--hCCCCCeeCCcccchhCCHHHhCc--CCCCC------------CCCCChhhcCHHHHHHHHHhhcCCC
Confidence            4567889998  999998 99999999999888776  33443            7789999999999999999999999


Q ss_pred             Cccccc
Q 024455          106 PVPFEK  111 (267)
Q Consensus       106 ~~~C~~  111 (267)
                      ||.|+.
T Consensus        67 ~~~C~~   72 (73)
T 2ctu_A           67 TSGPSS   72 (73)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            999863

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.14  E-value=3.5e-12  Score=94.56  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             CCCccccccCccccC------ChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc---CCCCCCCcCCccccccc
Q 024455           11 STARHKCVACYKQFK------RKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~------~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~   80 (267)
                      .++++.|+.|++.|.      ....|..|+ .  |++++| .|++||+.|.+..+|..|+   .++|.            
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~--h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~------------  102 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-A--SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV------------  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-H--HHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCB------------
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-H--hCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCC------------
Confidence            456788999887765      667777777 5  778888 9999999999999999998   34544            


Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |+.||+.|...+.|..|+++|++.
T Consensus       103 C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          103 CPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHCCc
Confidence            677889999999999999999976

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=6.6e-12  Score=84.42  Aligned_cols=61  Identities=20%  Similarity=0.332  Sum_probs=51.9

Q ss_pred             HHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc----C---CCCCCCcCCcccccccccccccccCChhhHHHHHHHh
Q 024455           30 LIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----T---GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        30 l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~---~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      |.+|+++  |+++++ .|++|++.|.+..+|..|+    .   ++|.            |+.|++.|...+.|..|+++|
T Consensus         3 ~~~H~~~--H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~------------C~~C~~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A            3 SGSSGRT--HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH------------CPHCDTVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCC--CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEE------------CSSSSCEESSHHHHHHHHHHT
T ss_pred             CCccccc--cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccC------------CCCCCCccCCHHHHHHHHHHh
Confidence            4568888  999999 9999999999999999997    1   2333            777889999999999999987


Q ss_pred             cCC
Q 024455          102 SLS  104 (267)
Q Consensus       102 ~~~  104 (267)
                      ++.
T Consensus        69 H~~   71 (77)
T 2ct1_A           69 HSY   71 (77)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=1.4e-11  Score=81.67  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=49.8

Q ss_pred             HhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCC
Q 024455           34 MKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        34 ~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      .++  |+++++ .|+.|++.|.+...|..|+     .++|.            |++|++.|.....|..|+++|+++.+
T Consensus         6 ~~~--H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~------------C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            6 SGI--HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK------------CLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCT--TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEE------------CSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             Ccc--cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeE------------CCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            456  899999 9999999999999999998     33444            67788899999999999999987743

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=2e-11  Score=86.65  Aligned_cols=58  Identities=10%  Similarity=0.060  Sum_probs=46.5

Q ss_pred             ccccccccCChhhHHHHHH-Hh---cCCCCcc---ccccCcchhhhhhh-ccccccccccCCCceeeeeccccC
Q 024455           81 CNLCMNIFDSPSSLIKHKE-AC---SLSAPVP---FEKTLSNAESQKKI-SGAIDEKRTCRGPKAVAMDCEMVG  146 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~-~h---~~~~~~~---C~~~f~~~~~l~~H-~~~~~~~r~~~~~~~~~~dcE~~g  146 (267)
                      |+.||+.|..++.|..|++ +|   .+++||.   |++.|...+.|..| ++.+.+.        ..+.|..+.
T Consensus        21 C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htge--------kpy~C~~~~   86 (102)
T 2ghf_A           21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE--------ENFKLTMVK   86 (102)
T ss_dssp             CSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTC--------CCEEEEECC
T ss_pred             CCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCC--------CCeeCCccc
Confidence            7778899999999999998 58   5688996   99999999999999 6555432        346676644

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=3.6e-11  Score=79.81  Aligned_cols=53  Identities=26%  Similarity=0.642  Sum_probs=46.6

Q ss_pred             CCCCCccccc--cCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus         9 ~~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      .+++++|.|+  .|++.|.....|..|+++  |.++++ .|+.||+.|.+...|..|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHh--hCCCCCeECCCCCchhCCHHHHHHHH
Confidence            4688999997  699999999999999999  888888 8888888888888888886

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1e-11  Score=87.65  Aligned_cols=52  Identities=25%  Similarity=0.389  Sum_probs=49.5

Q ss_pred             CCCCccccccCccccC-ChHHHHHHHhHhcCCC-CCC-CcccchhhcCCHHHHHhhc
Q 024455           10 RSTARHKCVACYKQFK-RKDHLIEHMKISYHSV-HQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~-~~~~l~~H~~~~~H~~-~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      +++++|.|+.|++.|. ....|..|+++  |++ +++ .|.+|++.|.+...|.+|+
T Consensus        20 ~~~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A           20 HERGEAVCPTCNVVTRKTLVGLKKHMEV--CQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             TTTSCCCCTTTCCCCSSCSHHHHHHHHH--HHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             ccCCCcCCCCCCCChhhhHHHHHHHHHH--HcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            5789999999999999 99999999999  887 778 9999999999999999998

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.08  E-value=8e-12  Score=86.28  Aligned_cols=73  Identities=19%  Similarity=0.486  Sum_probs=61.5

Q ss_pred             CCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCCCcc---cccc
Q 024455           42 HQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKT  112 (267)
Q Consensus        42 ~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~  112 (267)
                      ++| .|+.|++.|.+.+.|..|+     .++|.            |+.|++.|...+.|..|+++|++ .++.   |++.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~------------C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~   67 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CDICGRKFARSDERKRHRDIQHI-LPILEDKVEEL   67 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCcc------------CCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            356 9999999999999999998     34554            66788889999999999999985 5664   9999


Q ss_pred             Ccchhhhhhhccccc
Q 024455          113 LSNAESQKKISGAID  127 (267)
Q Consensus       113 f~~~~~l~~H~~~~~  127 (267)
                      |.....|..|+...+
T Consensus        68 f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           68 LSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHH
Confidence            999999999996543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=9.5e-11  Score=71.14  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=39.6

Q ss_pred             CCCCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccchh
Q 024455            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (267)
Q Consensus         7 ~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (267)
                      .+.+++++|.|+.|++.|.+...|..|+++  |++++| .|++|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS--HSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGG--SCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence            345789999999999999999999999999  999998 9999985

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=9.6e-11  Score=78.85  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             CCCCCC-Cccc--chhhcCCHHHHHhhc------CCCCCCCcCCcccccccccc--cccccCChhhHHHHHHHhcCCCCc
Q 024455           39 HSVHQP-KCAV--CQKLSKSFESLREHL------TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        39 H~~~~~-~C~~--C~~~f~~~~~l~~H~------~~~~~C~~C~k~f~~~~C~~--C~~~F~~~~~L~~H~~~h~~~~~~  107 (267)
                      .+++++ .|..  |++.|.+..+|..|+      .++|.            |+.  |++.|...+.|..|+++|++++||
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~------------C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   69 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS------------CPEPACGKSFNFKKHLKEHMKLHSDTRDY   69 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEE------------CSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeE------------CCCCCCcCccCCHHHHHHHHHHhCCCCCe
Confidence            355666 6665  999999999999997      23444            556  888999999999999999999999


Q ss_pred             c---ccccC
Q 024455          108 P---FEKTL  113 (267)
Q Consensus       108 ~---C~~~f  113 (267)
                      .   |++.|
T Consensus        70 ~C~~C~k~F   78 (79)
T 2dlk_A           70 ICEFSGPSS   78 (79)
T ss_dssp             SCCSSSCCC
T ss_pred             eCCCCCCCC
Confidence            7   55555

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.05  E-value=8.1e-11  Score=80.20  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=58.5

Q ss_pred             Cc--ccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccc--cccccCChhhHHHHHHHhcC---CCCcccccc
Q 024455           45 KC--AVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSL---SAPVPFEKT  112 (267)
Q Consensus        45 ~C--~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~--C~~~F~~~~~L~~H~~~h~~---~~~~~C~~~  112 (267)
                      .|  +.||+.|.+.+.|..|+     .++|.            |+.  |++.|...+.|..|+++|++   ..++.|++.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~~~C~~~f~~~~~l~~H~~~h~~~~C~~~~~C~~~   70 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYE------------CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV   70 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHTTCCEE------------CCSTTCCCEESSHHHHHHHHHHHHSEECCSCSSCCCE
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCCCCCee------------CCCCCCcCccCCHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence            68  89999999999999998     34554            555  88899999999999999998   333349999


Q ss_pred             Ccchhhhhhhcccc
Q 024455          113 LSNAESQKKISGAI  126 (267)
Q Consensus       113 f~~~~~l~~H~~~~  126 (267)
                      |.....|..|++.+
T Consensus        71 f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           71 GKTWTLYLKHVAEC   84 (85)
T ss_dssp             ESSHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHhc
Confidence            99999999998543

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=2.2e-10  Score=75.72  Aligned_cols=54  Identities=24%  Similarity=0.523  Sum_probs=49.0

Q ss_pred             CCCCCCcccccc--CccccCChHHHHHHHhHhcCCCCCC-Cccc--chhhcCCHHHHHhhc
Q 024455            8 PKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL   63 (267)
Q Consensus         8 ~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~   63 (267)
                      ..+..++|.|+.  |++.|.....|..|+++  |+++++ .|..  |++.|.+...|..|+
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRT--HTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHH--HSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHh--cCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            356889999988  99999999999999999  999998 9964  999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.00  E-value=8.3e-11  Score=76.38  Aligned_cols=55  Identities=15%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhcC-----CCCCCCcCCcccccccccccccccCChhhHHHHHHHhcC
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHLT-----GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~~-----~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |+++++ .|+.||+.|.+..+|..|+.     +..+.          .|+.|++.|...+.|..|+++|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~----------~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY----------PCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCE----------ECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCe----------ECCCCCCccCCHHHHHHHHHHHcC
Confidence            888888 99999999999999999971     11111          377888899999999999999876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3e-10  Score=67.78  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccch
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQ   50 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~   50 (267)
                      .++++||.|+.|++.|..+..|..|+++  |+++++ .|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS--HDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHH--HSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHH--ccCCCCCCCcCCC
Confidence            4689999999999999999999999999  999998 999996

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.96  E-value=2.9e-10  Score=71.40  Aligned_cols=46  Identities=30%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhc
Q 024455           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      .|+.|++.|.+...|..|+     .++|.            |+.|++.|...+.|..|+++|+
T Consensus         6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYK------------CEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             BCTTTCCBCSCHHHHHHHHHHHHCCCCEE------------CSSSSCEESSHHHHHHHHHHHC
T ss_pred             cCCCCcchhCChHHHHHHHHHcCCCCCcC------------CCCCcchhCCHHHHHHHHHHhc
Confidence            5666666666666666665     22333            3445555555666666666554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=8.5e-10  Score=66.07  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGG--TSCCCCCSCCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhh--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.92  E-value=3.9e-10  Score=77.23  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKIS  123 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~  123 (267)
                      |++||+.|.+.+.|..|+++|++++||+   |++.|.....|..|+
T Consensus        31 C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            4444444444444444444444444443   444444444444443

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.8e-10  Score=75.30  Aligned_cols=60  Identities=23%  Similarity=0.430  Sum_probs=46.9

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc---C---CCCCCCcCCcccccccccccccccCChhhHHHHHH-HhcCCCCcc
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL---T---GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE-ACSLSAPVP  108 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~---~---~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~-~h~~~~~~~  108 (267)
                      |+++++ .|.+|++.|.+...|..|+   .   +..+.          .|++|++.|...+.|..|++ .|.++++..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~----------~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRF----------PCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCE----------ECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCccc----------CCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            889999 9999999999999999998   2   12221          36778889999999999995 555565543

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1e-09  Score=65.67  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.++..|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERL--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHH--CCSSSCCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHh--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.4e-10  Score=65.91  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=36.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRT--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTT--TCCSCSSCCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  999998 99887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.6e-10  Score=66.08  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRV--HMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGG--GGSCCCCCSCCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999998 99887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.1e-09  Score=65.57  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMV--HTAEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHH--TTCCCSSSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.91  E-value=8.9e-10  Score=66.03  Aligned_cols=39  Identities=26%  Similarity=0.512  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHH--HSSCCCSSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.5e-10  Score=66.11  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGG--TSCSSCSCCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.91  E-value=9.3e-10  Score=65.86  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRS--HTGVKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGG--SSSCCCSCCTTC
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1e-09  Score=65.73  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTT--TTTCCCCSSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=7.4e-10  Score=65.66  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+++.|..|+++  |+++++ .|+.|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT--HAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHH--HTSSCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.8e-10  Score=65.76  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|+|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRI--HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGG--GSCCCSCSSCCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=65.61  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+.+.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRS--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--SCCSSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.5e-10  Score=65.86  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTT--TCCCCCCSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 99887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=9.9e-10  Score=65.78  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=35.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||+|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNV--HVGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGG--GSSSSCSCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHH--cCCCCCcCCCCC
Confidence            3589999999999999999999999999  999988 99887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=9.4e-10  Score=65.89  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMV--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGG--GTTCCCSSTTCC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.1e-09  Score=65.51  Aligned_cols=39  Identities=28%  Similarity=0.482  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRI--HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTT--TTTSCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.4e-10  Score=65.88  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTT--TCCCCCSCCSCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.8e-10  Score=65.80  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRI--HSGKKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGG--GSSCCCSCSSCC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHH--hcCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.1e-09  Score=65.61  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHT--TSSCCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.5e-10  Score=65.83  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHH--HSCCCTTSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.3e-09  Score=65.31  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKI--HTKQKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHH--TSCCCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99886

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.8e-10  Score=73.99  Aligned_cols=50  Identities=26%  Similarity=0.439  Sum_probs=34.4

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc-cchhhcCCHHHHHhhc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA-VCQKLSKSFESLREHL   63 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~-~C~~~f~~~~~l~~H~   63 (267)
                      -+++||.|+.|++.|. .+.|..|+++   ++++| .|+ .||+.|..++.|..|+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~   57 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHL   57 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHH
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHH
Confidence            4688999999999999 9999999876   34444 555 5555554444444444

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=65.57  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=36.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      .+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRM--HTREKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSSCCSCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999998 99887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.1e-09  Score=65.50  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRT--HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHH--CCSCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.5e-10  Score=65.86  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRT--HAGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--HTTSCCSCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.1e-09  Score=65.52  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTT--TTTCSCCCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.89  E-value=9.4e-10  Score=65.91  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKL--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHH--HSCCSSCSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1e-09  Score=65.76  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKV--HTGERPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTT--SCSCCSSCCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHh--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=65.51  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTT--TSCSCCSSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.88  E-value=1.1e-09  Score=65.64  Aligned_cols=39  Identities=33%  Similarity=0.520  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTG--GGCCCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=65.32  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |+++++ .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKC--HTGERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHH--HSCCSSCCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.1e-09  Score=65.54  Aligned_cols=39  Identities=33%  Similarity=0.508  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.++..|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRI--HTGYRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHH--HTCCCSSCSSCC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=65.34  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+.+.|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRV--HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTT--TCCSCSSCCSCC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999998 99887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=9.1e-10  Score=66.00  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=36.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      .++++||.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRL--HTGQRPSGPSSG   46 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHH--HHSCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 99887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=65.67  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRT--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHH--HSSCCCSSSCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999998 99887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.1e-09  Score=65.59  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~c   46 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHH--HSSSSCSSCCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHH--HCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.4e-09  Score=65.04  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+...|..|+++  |+++++ .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGG--GCCCSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.87  E-value=1.3e-09  Score=65.21  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+...|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRV--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGG--GTSCCCCSTTCC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.6e-09  Score=65.10  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHh-HhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|++ +  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~--H~~~k~~~C~~C   47 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYY--HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTT--TTTSCSSSCCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhh--cCCCCCCCCCCC
Confidence            368999999999999999999999999 8  999998 99887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.8e-10  Score=66.05  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=35.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -++++||.|+.|++.|.+.+.|..|+++  |+++++ .|+.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKR--HFREKSSGPSSG   46 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHH--HHSTTSSCCSCC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 99887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.3e-09  Score=65.22  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG--GSCCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.3e-09  Score=65.32  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+.+.|..|+++  |++++| .|+.|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVL--HMGQKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHH--HSCCSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3688999999999999999999999999  999998 99887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.5e-09  Score=64.97  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      .+++++|.|+.|++.|.+...|..|+++  |++++| .|++|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTT--TSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  999998 99887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.9e-10  Score=65.78  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=35.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHH--HHCSSCSSSCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 99887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=65.61  Aligned_cols=39  Identities=23%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|..++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHH--HHCCSCCSCCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=65.66  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |+++++ .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRV--HTGEKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHH--HHCCCCCCSCCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 99887

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.85  E-value=4.8e-10  Score=74.25  Aligned_cols=61  Identities=20%  Similarity=0.498  Sum_probs=41.8

Q ss_pred             HHHHHHhHhcCCCCCC-Ccc--cchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHH
Q 024455           29 HLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA  100 (267)
Q Consensus        29 ~l~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~  100 (267)
                      .|..|...+ |+++++ .|+  .|++.|.....|..|+     .++|.            |+.||+.|...+.|..|+++
T Consensus         5 ~~~~~~~~~-~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G            5 PMNNLLNYV-VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ------------CRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             ---CTTSCC-CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEE------------CTTTCCEESCHHHHHHHHTT
T ss_pred             Cccchhhcc-CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeE------------CCCCCchhCCHHHHHHHHHh
Confidence            344454443 777777 886  5888888888888887     33443            56677778888888888887


Q ss_pred             hc
Q 024455          101 CS  102 (267)
Q Consensus       101 h~  102 (267)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.1e-10  Score=65.94  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=35.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRV--HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHH--HHSCCCSCSCCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 99887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1e-09  Score=65.75  Aligned_cols=39  Identities=23%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGG--GSSCCSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.1e-09  Score=64.32  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=35.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~   46 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTT--TTTSCCCCTTCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 99875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=64.56  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=36.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      .+++++|.|+.|++.|.++..|..|+++  |++++| .|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWIT--HTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTH--HHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  999888 99887

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.81  E-value=2.2e-09  Score=67.29  Aligned_cols=49  Identities=27%  Similarity=0.501  Sum_probs=25.3

Q ss_pred             CcccchhhcCCHHHHHhhc-----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCC
Q 024455           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|+.|++.|.+.+.|..|+     .++|.            |+.|++.|...+.|..|+++|++++
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            3 ICEECGIRXKKPSMLKKHIRTHTDVRPYH------------CTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSSCCCEE------------CSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cCCCCcCcCCCHHHHHHHHHhcCCCCCcc------------CCCCCchhcCHHHHHHHHHHhcccC
Confidence            4555555555555555555     12222            3445555555555555555555443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=5.8e-09  Score=67.30  Aligned_cols=42  Identities=24%  Similarity=0.407  Sum_probs=35.9

Q ss_pred             CCCCCCCCCcccccc--CccccCChHHHHHHH-hHhcCCCCCC-Cccc
Q 024455            5 AELPKRSTARHKCVA--CYKQFKRKDHLIEHM-KISYHSVHQP-KCAV   48 (267)
Q Consensus         5 ~~~~~~~~k~~~C~~--C~k~f~~~~~l~~H~-~~~~H~~~~~-~C~~   48 (267)
                      .+..-+|+|||+|..  |++.|.++++|..|+ ++  |++++| .|..
T Consensus        18 ~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rri--HTgEKP~~~~~   63 (73)
T 1x3c_A           18 FPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAV--HKSDLPAFSAE   63 (73)
T ss_dssp             CSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHH--SSSCCCCCCCS
T ss_pred             ccccccCCCCeECCCCCcChhHcCHHHHHHHhhhh--CCCCCCccccc
Confidence            344468999999965  999999999999998 68  999999 7754

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.9e-09  Score=63.70  Aligned_cols=39  Identities=28%  Similarity=0.529  Sum_probs=35.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--HCCCCSSCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 99875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=5.7e-09  Score=61.47  Aligned_cols=38  Identities=13%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      .+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQ--THSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHH--HTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHh--hCCCCCccCCC
Confidence            4689999999999999999999999999  999988 8864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=7.1e-09  Score=61.95  Aligned_cols=38  Identities=32%  Similarity=0.536  Sum_probs=34.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|+|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSCCCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=8e-09  Score=61.68  Aligned_cols=38  Identities=29%  Similarity=0.504  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|..++.|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTT--TTTSSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHh--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1e-08  Score=59.85  Aligned_cols=36  Identities=22%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      ++++||.|+.|++.|.+++.|..|+++  |+++++ .|.
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2yte_A            6 SGEKPYSCAECKETFSDNNRLVQHQKM--HTVKSGPSSG   42 (42)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHHH--TSCCSSCCCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            588999999999999999999999999  999888 773

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4e-10  Score=74.36  Aligned_cols=54  Identities=20%  Similarity=0.303  Sum_probs=46.9

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc-----CCCCCCCcC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHC   72 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C   72 (267)
                      +++++|.|+.|++.|.....|..         +++ .|+.||+.|.+.++|..|+     .++|.|+.|
T Consensus        14 ~~~~~~~C~~C~k~f~~~~~l~~---------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           14 LGDRSQKCSKCGIIFIRRSTLSR---------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSEEECSSSCCEEECCCCCCC---------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCCeeCCcccchhCCHHHhCc---------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            58899999999999999887754         455 9999999999999999998     457888776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.73  E-value=7.8e-09  Score=60.41  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=33.2

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      +++++|.|+.|++.|.+++.|..|+++  |+++++ .|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2el5_A            6 SGENPYECSECGKAFNRKDQLISHQRT--HAGESGPSSG   42 (42)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGG--GCCCCSCCCC
T ss_pred             CCCCCccCCCcChhhCCHHHHHHHHHh--cCCCCCCCCC
Confidence            588999999999999999999999999  999888 774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.1e-08  Score=61.16  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |+++++ .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRV--HTGERSSGPSS   45 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHH--CSSCCSCSTTC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8863

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.1e-09  Score=68.96  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=39.1

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc----CCCCCCCcCCccccccccc-ccccccCChhhHHHHHHHhcCCCC
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCN-LCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~-~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      +.+.+| .|..||+.|. .++|..|+    .++|            .|+ .||+.|..++.|..|+++|...++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~------------~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPV------------ACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEE------------ECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCc------------cCCcccCcccccHHHHHHHHHhhcccCc
Confidence            345666 8888888888 88888887    1223            266 677777778888888888866554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.6e-09  Score=61.54  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTT--TSCSCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHh--cCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.72  E-value=5.8e-10  Score=71.60  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhh
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (267)
                      .++++||.|+.|++.|.....|.   ++  |++++| .|+.||+.|....++..+
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~--H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LF--DPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HE--ETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hh--cCCCCCEECCCCCCccccCcccccc
Confidence            36889999999999999888876   67  998888 999999999877665443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=9.9e-09  Score=61.27  Aligned_cols=38  Identities=32%  Similarity=0.479  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKI--HTGERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTT--TSCCCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 8864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.3e-09  Score=61.68  Aligned_cols=38  Identities=29%  Similarity=0.532  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSV--HSGERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTT--TTSCCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 8864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.71  E-value=7.8e-09  Score=61.78  Aligned_cols=38  Identities=24%  Similarity=0.459  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHH--HTTSCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 8864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=9e-09  Score=59.82  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=33.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -+++++|.|+.|++.|.....|..|+++  |++++| .|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERI--HTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGG--CCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHH--hCCCCCcCC
Confidence            3689999999999999999999999999  999887 66

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1e-08  Score=61.20  Aligned_cols=38  Identities=24%  Similarity=0.520  Sum_probs=34.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGG--GTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=7.8e-09  Score=59.26  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             CCCCCCcccccc--CccccCChHHHHHHHhHhcCCCC
Q 024455            8 PKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus         8 ~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +.+++|||+|+.  |++.|.+++.|..|+++  |+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~--Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKV--HTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHH--HSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            467999999986  99999999999999999  9875

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.1e-09  Score=61.40  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=34.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRT--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHT--SCSSSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.4e-09  Score=61.33  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGG--TSSCCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHh--cCCCCCcCCCC
Confidence            3689999999999999999999999999  999988 8864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=7.7e-09  Score=61.79  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=34.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|+|+.|++.|.+...|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRS--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHH--HSSSSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1e-08  Score=61.20  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTT--TSSSCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3689999999999999999999999999  999988 8864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.7e-09  Score=61.30  Aligned_cols=38  Identities=21%  Similarity=0.436  Sum_probs=34.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGG--GCCCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.71  E-value=7.3e-09  Score=65.58  Aligned_cols=43  Identities=16%  Similarity=0.444  Sum_probs=25.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKIS  123 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~  123 (267)
                      |+.|++.|...+.|..|+++|++++||.   |++.|.....|..|+
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            4455555555666666666666665554   555566666666664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.4e-09  Score=61.31  Aligned_cols=38  Identities=24%  Similarity=0.497  Sum_probs=34.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|+|+.|++.|.++..|..|+++  |+++++ .|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRI--HTGEKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTT--TSSCCCCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 8863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.1e-08  Score=61.19  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRV--HSGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGG--SCCSCCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 8863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1e-08  Score=61.28  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHH--HSSCCCSSCCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  999988 8864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.1e-08  Score=61.63  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             CCCCCccccc--cCccccCChHHHHHHHhHhcCCCCCC-Ccccc
Q 024455            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (267)
Q Consensus         9 ~~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C   49 (267)
                      -+++++|.|+  .|++.|..+..|..|+++  |++++| .|..|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRS--HSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTT--SCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3689999998  899999999999999999  999998 99887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.70  E-value=1.2e-08  Score=59.55  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=33.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -++++||.|+.|++.|.+++.|..|+++  |++++| .|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRS--CSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--TTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhh--cCCCCCCCC
Confidence            3689999999999999999999999999  999887 76

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1e-08  Score=61.21  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=34.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHH--HTSSCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4689999999999999999999999999  999888 8864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1e-08  Score=61.18  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |+++++ .|+.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRI--HRGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGG--GCSCCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=60.92  Aligned_cols=38  Identities=26%  Similarity=0.446  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRI--HTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGG--GSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999988 8864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.3e-08  Score=60.81  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTT--TCCSCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 8864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.7e-09  Score=61.27  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.+++.|..|+++  |++++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQAT--HSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHH--HCCCSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 8864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1e-08  Score=60.50  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=33.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -++++||.|+.|++.|.++..|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKT--HSGQSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTT--SSSSCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHH--cCCCCCCCCC
Confidence            3688999999999999999999999999  999888 774

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.8e-09  Score=61.30  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKT--HTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHH--HCCCCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.3e-08  Score=60.06  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=33.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -+++++|.|+.|++.|.+...|..|+++  |++++| .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRT--HTGESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHH--TTTSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHH--hCCCCCCCCC
Confidence            3689999999999999999999999999  999888 774

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.2e-08  Score=60.85  Aligned_cols=38  Identities=26%  Similarity=0.488  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|..+..|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTT--TSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3689999999999999999999999999  999888 8864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=59.73  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=32.3

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      ++++||.|+.|++.|.+.+.|..|+++  |++++| .|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2eos_A            7 GGEKPYPCEICGTRFRHLQTLKSHLRI--HTGSGPSSG   42 (42)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHTTT--TSCCSSTTC
T ss_pred             CCCCCEECCCCCCccCCHHHHHHHHHh--cCCCCCCCC
Confidence            588999999999999999999999999  999887 66

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.3e-08  Score=60.03  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -+++++|.|+.|++.|.+...|..|+++  |++++| .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRT--HTGESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTT--TCCSSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhh--cCCCCCCCCC
Confidence            3688999999999999999999999999  999888 774

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.2e-08  Score=60.88  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -++++||.|+.|++.|.++..|..|+++  |+++++ .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQS--HTGERHSGPSS   45 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHH--HTCCCBTTTBC
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHH--cCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=60.87  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=34.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCC-CCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV-HQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~-~~~-~C~~   48 (267)
                      -++++||.|+.|++.|.+...|..|+++  |++ ++| .|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~~C~~   46 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERI--HTRGVKSGPSSG   46 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTT--CCSCCTTSSSCC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3689999999999999999999999999  998 888 8863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=59.76  Aligned_cols=37  Identities=19%  Similarity=0.467  Sum_probs=33.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -++++||.|+.|++.|.++..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERT--HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHH--CCCCCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHh--cCCCCCCCCC
Confidence            3689999999999999999999999999  999888 774

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=59.77  Aligned_cols=37  Identities=27%  Similarity=0.566  Sum_probs=33.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -+++++|.|+.|++.|.....|..|+++  |++++| .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKT--HAAKSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGG--GCCCCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCC
Confidence            3688999999999999999999999999  999888 774

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=60.76  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.++..|..|+++  |+++++ .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRV--HTQETLSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHH--HSSCCSSSCCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=61.14  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=34.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|.+...|..|+++  |++++| .|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHH--HHSCCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=59.85  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=33.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      .+++++|.|+.|++.|.+...|..|+++  |++++| .|+
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQAL--HAGESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHH--HTTSCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--HCCCCCCCCC
Confidence            3588999999999999999999999999  999888 774

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.8e-08  Score=60.09  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=34.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~   48 (267)
                      -+++++|.|+.|++.|...+.|..|+++  |++++| .|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAI--HTGKKPSGPSS   45 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTT--SCCCCCCCSCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3688999999999999999999999999  999888 8863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=59.54  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=32.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -++++||.|+.|++.|.+.+.|..|+++  |++++| .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRV--HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGG--TSCCSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHH--hCCCCCCCC
Confidence            3588999999999999999999999999  998887 66

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.6e-09  Score=60.00  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=32.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -++++||.|+.|++.|.+...|..|+++  |++++| .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLI--HTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHH--HHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHH--cCCCCCCCC
Confidence            3689999999999999999999999999  998887 66

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.64  E-value=2.1e-08  Score=55.83  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +++++|.|+.|++.|.+++.|..|+++  |++++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~kp   35 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIRE--VHGAAQ   35 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHH--TSCTTC
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHH--HcCCCC
Confidence            578999999999999999999999999  988764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.62  E-value=2.5e-08  Score=57.23  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +++++|.|+.|++.|...+.|..|+++  |++++|
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~   34 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNV--HRRDRA   34 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT--TCCSCT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHH--cCCCcc
Confidence            478999999999999999999999999  999877

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.61  E-value=2.5e-08  Score=55.60  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +++++|.|+.|++.|...+.|..|+++  |++++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~   35 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKV--HTDTLS   35 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG--GTSCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHH--cCCCCC
Confidence            589999999999999999999999999  988764

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.4e-08  Score=60.69  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -+++++|+|+.|++.|.+...|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRL--HSREKSSGPS   44 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHH--HHHTTCCCSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3688999999999999999999999999  988888 886

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.4e-08  Score=56.48  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      .+++++|.|+.|++.|.++..|..|+++  |++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKT--NHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHH--HCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHH--HcCCCC
Confidence            3689999999999999999999999999  988764

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.4e-08  Score=58.34  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -+++++|.|+.|++.|.+.+.|..|+++  |++++| .|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~~   43 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERT--HAGVSGPSS   43 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGG--GSSCSCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhH--hcCCCCCCC
Confidence            3689999999999999999999999999  998877 55

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=2.7e-08  Score=61.70  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc------CCCCCCCcCCccccc
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL------TGPLSKAHCSGIFSD   78 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~------~~~~~C~~C~k~f~~   78 (267)
                      |+++++ .|++|++.|.+...|.+|+      .++|.|+.|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            555556 6666666666666666664      345555555555543

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.6e-08  Score=60.27  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      -++++||.|+.|++.|.....|..|+++  |++++| .|+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRS--HERTDPSGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHH--HHHSCCSSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3588999999999999999999999999  988887 775

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.9e-08  Score=59.34  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Cc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C   46 (267)
                      -++++||.|+.|++.|.+...|..|+++  |++++| .|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C   43 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKI--HTRKSGPSS   43 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHH--HCCCCCCSC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHH--hCCCCCCCC
Confidence            3688999999999999999999999999  998887 76

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=2e-08  Score=59.85  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A           15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence            455666666667777777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=2.1e-08  Score=59.75  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A           15 CKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             BTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            4556667777777777777777777777653

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=2.1e-08  Score=59.81  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A           15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            445566666667777777777777777665

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=9.2e-08  Score=66.31  Aligned_cols=63  Identities=13%  Similarity=-0.001  Sum_probs=51.6

Q ss_pred             CCCCCcCCcccccccccccccccCChhhHHHHHHH-hcCCCC--------cc---ccccCcchhhhhhhcccccc
Q 024455           66 PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA-CSLSAP--------VP---FEKTLSNAESQKKISGAIDE  128 (267)
Q Consensus        66 ~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~-h~~~~~--------~~---C~~~f~~~~~l~~H~~~~~~  128 (267)
                      .+.|.-.+..+....|+.|++.|.....|..|+++ |.++++        |.   |++.|.....|..|++.+.+
T Consensus        13 ~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             CCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            45665554445555699999999999999999998 888877        65   88999999999999977654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.55  E-value=2.3e-08  Score=59.65  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em0_A           15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS   44 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence            444555666666666666666666666664

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=2.3e-08  Score=59.67  Aligned_cols=30  Identities=13%  Similarity=0.125  Sum_probs=19.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2elz_A           15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPS   44 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred             CcccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            445566666666777777777777777665

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=1.7e-08  Score=59.65  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|.+.+.|..|+++|++++||.|+.
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A           13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777777777777777777777777653

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.9e-08  Score=60.02  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A           15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555666666666666666666666654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.54  E-value=2.2e-08  Score=59.72  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=23.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A           15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567777777888888888888888887764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.1e-08  Score=54.39  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .++++||+|+.|++.|..++.|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV--HGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--hcCCC
Confidence            4689999999999999999999999999  98753

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2e-08  Score=59.90  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A           15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             CCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5556666777777777777777777777653

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.4e-08  Score=59.50  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A           15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444555666666666666666666666654

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.6e-08  Score=59.43  Aligned_cols=30  Identities=33%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytq_A           15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred             CCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence            455666666777777777777777777765

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.4e-08  Score=59.47  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A           15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            445666666667777777777777777665

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=5.4e-08  Score=56.63  Aligned_cols=30  Identities=17%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           13 CAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667888889999999999999999999886

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.1e-08  Score=59.84  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eml_A           15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred             CCCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            455666666667777777777777777665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.5e-08  Score=59.48  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A           15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5566777777788888888888888887753

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.52  E-value=2.3e-08  Score=59.56  Aligned_cols=30  Identities=27%  Similarity=0.447  Sum_probs=18.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.||+.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2el4_A           15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS   44 (46)
T ss_dssp             CSSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555666666666666666666666654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.52  E-value=2.1e-08  Score=59.76  Aligned_cols=30  Identities=27%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A           15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            455666666677777777777777777665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.5e-08  Score=59.47  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=19.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em7_A           15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred             CCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445566666666666666666666666664

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2e-08  Score=59.86  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=19.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ene_A           15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred             CCCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence            445556666666666666666666666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.1e-08  Score=59.76  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.||+.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A           15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            555666677777777777777777777765

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.5e-08  Score=59.46  Aligned_cols=31  Identities=19%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A           15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5566777777778888888888888877753

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.9e-08  Score=59.21  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A           15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             BTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5566777777778888888888888887753

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.52  E-value=2.5e-08  Score=59.45  Aligned_cols=30  Identities=30%  Similarity=0.425  Sum_probs=17.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em9_A           15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred             CCccccccCChHHHHHHHHHhCCCCCCCCC
Confidence            444555555556666666666666666554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.6e-08  Score=59.38  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A           15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5556667777777777777777777777653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=8.5e-08  Score=53.78  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .++++||+|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR--HSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH--SSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH--hccCC
Confidence            4689999999999999999999999999  98753

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.51  E-value=2e-08  Score=59.94  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A           15 CVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             cCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567777778888888888888888888763

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.9e-08  Score=59.19  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=17.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.||+.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en1_A           15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             ETTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555556666666666666666554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.2e-08  Score=59.67  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq0_A           15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            455666666666777777777777777665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.2e-08  Score=59.74  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A           15 CNECGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             ccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            5556666777777777777777777777653

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.4e-08  Score=59.54  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |++|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A           15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5556666777777777777777777777653

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.3e-08  Score=59.64  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A           15 CHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            5566777777777888888888888877753

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=2.7e-08  Score=59.33  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A           15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555666667777777777777777777765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=2.4e-08  Score=59.54  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A           15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             CCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            555666777777777777777777777765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=2.4e-08  Score=59.51  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A           15 CNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             ETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667777777778888888888888877753

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=2.5e-08  Score=59.49  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=19.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++||+.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em5_A           15 CHECGRGFTLKSHLNQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred             CCcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445556666666666666666666666654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.50  E-value=1.9e-08  Score=62.33  Aligned_cols=27  Identities=22%  Similarity=0.552  Sum_probs=21.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~  107 (267)
                      |+.||+.|...+.|..|+++|++++||
T Consensus        27 C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           27 CPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            556777777888888888888888876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.9e-08  Score=59.12  Aligned_cols=30  Identities=20%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.||+.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eme_A           15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred             CCCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            445566666666677777777777776664

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.2e-08  Score=59.67  Aligned_cols=30  Identities=27%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2yu8_A           15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred             CCcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            555666666777777777777777777765

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.5e-08  Score=59.47  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=19.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ysp_A           15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS   44 (46)
T ss_dssp             ETTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred             CCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            455666666666666666666666666664

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=9.7e-08  Score=53.45  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=30.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .+++++|.|+.|++.|.++..|..|+++  |++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL--HTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH--HSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH--hcCCC
Confidence            4689999999999999999999999999  88763

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.3e-08  Score=59.61  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=17.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytg_A           15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CTTTCCEESSSHHHHTTGGGGSSCCSSCSC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555566666666666666666554

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=9.4e-08  Score=53.52  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .++++||.|+.|++.|.....|..|+++  |++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK--HTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH--HTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH--ccCCC
Confidence            4689999999999999999999999999  88753

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.49  E-value=7e-08  Score=53.19  Aligned_cols=30  Identities=33%  Similarity=0.703  Sum_probs=28.2

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +||.|+.|++.|.+.+.|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~--H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL--HELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH--HTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH--hCCCCC
Confidence            689999999999999999999999  998876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=3e-08  Score=59.13  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=22.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A           15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            5566777777778888888888888887753

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=3.1e-08  Score=59.06  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=21.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A           15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            5556666777777777777777777777653

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=3e-08  Score=59.08  Aligned_cols=30  Identities=20%  Similarity=0.118  Sum_probs=19.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||+|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en8_A           15 CDECGKNFCYISALRIHQRVHMGEKCSGPS   44 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred             CCCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666666666677777777777776664

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=9.9e-08  Score=61.70  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCCCcccch
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQ   50 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~~C~~C~   50 (267)
                      .+++|||+|..|++.|.++..|..|+++  |+++...+..+.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~--Htg~~~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ--HGVTSLQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH--HTTTSCCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh--hCCCcccccccc
Confidence            5789999999999999999999999999  998765555554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=3e-08  Score=59.12  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=23.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A           15 CNECGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             ETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             CCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            5667777777777888888888888877753

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=2.6e-08  Score=59.34  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=23.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A           15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566777777778888888888888887753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=9.1e-08  Score=53.66  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=29.8

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .+++++|.|+.|++.|.....|..|+++  |++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI--HTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH--HCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH--hCCCC
Confidence            4688999999999999999999999999  88753

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=3.4e-08  Score=58.83  Aligned_cols=31  Identities=26%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.||+.|...+.|..|+++|++++||+|..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A           15 CRECGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             ccccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5566677777777888888888888877753

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.47  E-value=7.4e-08  Score=56.07  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           13 CSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            667888888899999999999999998884

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=3.5e-08  Score=58.81  Aligned_cols=31  Identities=13%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A           15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            5566677777777778877787777777753

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.45  E-value=4.2e-08  Score=58.48  Aligned_cols=30  Identities=20%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A           15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             CSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            555666677777777777777777777765

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=1e-07  Score=56.69  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A           15 CKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678888889999999999999999999864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=4.3e-08  Score=58.37  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=21.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A           15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5556667777777777777777777777753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.44  E-value=1.4e-07  Score=53.20  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=28.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      -++++||+|+.|++.|.++..|..|+++  |+++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   37 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HMLV   37 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTCC
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHH--hccC
Confidence            3689999999999999999999999999  8763

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1.2e-07  Score=55.61  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A           13 CNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            677888899999999999999999999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.43  E-value=6.9e-09  Score=66.48  Aligned_cols=48  Identities=17%  Similarity=0.295  Sum_probs=35.7

Q ss_pred             HHHHHhHhcCCCCCC-CcccchhhcCCHHHHH-hhc-CCCCCCCcCCcccccc
Q 024455           30 LIEHMKISYHSVHQP-KCAVCQKLSKSFESLR-EHL-TGPLSKAHCSGIFSDR   79 (267)
Q Consensus        30 l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~-~H~-~~~~~C~~C~k~f~~~   79 (267)
                      |..|+++  |++++| .|+.||+.|.+...|. .|. .++|.|+.|++.|...
T Consensus         2 L~~h~~~--H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            2 IETDERD--STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCCSSS--CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred             hhhHHHH--cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence            3457788  999888 9999999999888885 222 5678777777776643

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.43  E-value=9.3e-08  Score=62.77  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             cccccCChhhHHHHHHHhcCCCCcc-----ccccCcchhhhhhhc
Q 024455           84 CMNIFDSPSSLIKHKEACSLSAPVP-----FEKTLSNAESQKKIS  123 (267)
Q Consensus        84 C~~~F~~~~~L~~H~~~h~~~~~~~-----C~~~f~~~~~l~~H~  123 (267)
                      |++.|...+.|..|+++|++++||.     |++.|.....|..|+
T Consensus        25 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            5666666666666666666666553     455566666666665

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=7.2e-08  Score=56.78  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=26.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           15 CNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             ETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            677888888999999999999999999885

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=55.68  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           15 CQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            667888888999999999999999999884

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=56.22  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            677888899999999999999999999986

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.4e-07  Score=56.15  Aligned_cols=31  Identities=19%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888889999999999999999998864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=53.56  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             CCCCccccccCccccCChHHHHHH-HhHhcCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H-~~~~~H~~~   42 (267)
                      ++++||+|+.|++.|.+++.|..| +++  |+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~   36 (37)
T 2elm_A            5 SSGHLYYCSQCHYSSITKNCLKRHVIQK--HSNI   36 (37)
T ss_dssp             SSSCEEECSSSSCEEECHHHHHHHHHHH--TCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHH--ccCc
Confidence            589999999999999999999999 888  8864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.3e-07  Score=55.60  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=25.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           15 CNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            667888888899999999999999998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.41  E-value=1.5e-07  Score=53.06  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             CCCCCCccccccCccccCChHHHHHHHhH
Q 024455            8 PKRSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus         8 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +..|||||+|+.|+|+|.++++|..|+..
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcCCe
Confidence            34689999999999999999999999854

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.40  E-value=1.5e-07  Score=56.00  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=26.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           15 CAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888999999999999999998863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.2e-07  Score=56.36  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=26.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5677888888899999999999999988864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.7e-07  Score=55.76  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678888889999999999999999999863

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=8.2e-08  Score=57.34  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             ccccccccCChhhHHHHHH-HhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~-~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|++ +|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A           15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             CCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            5556677777777888877 788888887753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=1.7e-07  Score=49.78  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=27.4

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      ++||.|+.|++.|.....|..|+++  |++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET--HDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT--TCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH--hccCC
Confidence            5799999999999999999999999  88753

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.5e-07  Score=56.03  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           15 CIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6678888888999999999999999998863

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.6e-07  Score=55.92  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=27.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A           15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            6678888889999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.2e-07  Score=56.37  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |++|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A           15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888889999999999999999998864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.3e-07  Score=56.22  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667888888899999999999999988863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.2e-07  Score=56.39  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=26.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           15 CSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888899999999999999988863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.3e-07  Score=56.20  Aligned_cols=31  Identities=26%  Similarity=0.487  Sum_probs=26.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|.+.+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888888999999999999999998864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.1e-07  Score=56.38  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             ETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            778888999999999999999999999885

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.6e-07  Score=55.77  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=26.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A           15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677888888999999999999999998863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.6e-07  Score=55.74  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=26.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           15 CNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678888888999999999999999998863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.4e-07  Score=56.15  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667788888889999999999999988864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.3e-07  Score=56.17  Aligned_cols=30  Identities=23%  Similarity=0.453  Sum_probs=26.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           15 CSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667888889999999999999999999986

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.4e-07  Score=56.06  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           15 CNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667788888889999999999999988863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=7.1e-08  Score=57.46  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A           15 CKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777888888888888888888888764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.3e-07  Score=55.61  Aligned_cols=30  Identities=30%  Similarity=0.363  Sum_probs=25.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           15 CNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566778888889999999999999998874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.5e-07  Score=55.90  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=26.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6678888888999999999999999998863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.6e-07  Score=55.27  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           15 CSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            667888888899999999999999999884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.39  E-value=1.6e-07  Score=54.51  Aligned_cols=29  Identities=34%  Similarity=0.613  Sum_probs=25.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      |+.||+.|...+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           14 CGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67788888889999999999999999876

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.5e-07  Score=56.03  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=26.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667888888899999999999999998863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.6e-07  Score=55.80  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A           15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6678888888999999999999999998863

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.38  E-value=1.6e-07  Score=56.63  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             CCCCccccccCccccCChHHHHHHHh-HhcCCCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP   44 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~   44 (267)
                      +++|||.|+.|++.|.....|..|++ +  |+++..
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~--H~~e~~   36 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHS--HLAEEE   36 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHS--SCC---
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhh--cCCCCC
Confidence            58999999999999999999999999 8  988754

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.1e-07  Score=53.62  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             CCCCCccccccCccccCCh-HHHHHHHhHhcCCCC
Q 024455            9 KRSTARHKCVACYKQFKRK-DHLIEHMKISYHSVH   42 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~-~~l~~H~~~~~H~~~   42 (267)
                      -++++||+|+.|++.|.++ +.|..|+++  |+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~--H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA--HEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH--HHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh--cCCC
Confidence            3588999999999999999 999999999  8775

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.9e-07  Score=55.56  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             ETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778888888999999999999999998863

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=2.6e-07  Score=59.61  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=25.8

Q ss_pred             cccccccCChhhHHHHH-HHhcCCCCcccc
Q 024455           82 NLCMNIFDSPSSLIKHK-EACSLSAPVPFE  110 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~-~~h~~~~~~~C~  110 (267)
                      +.|++.|.+.++|..|+ ++|++++|+.|.
T Consensus        33 ~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           33 QGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             TTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            45999999999999997 689999999875

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.2e-07  Score=54.86  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      |+.|++.|...+.|..|+++|++++||.|
T Consensus        13 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           13 CQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            67788888889999999999999999876

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.37  E-value=2.1e-07  Score=48.47  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=25.1

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      ++||.|+.|++.|.+.+.|..|+++  |+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT--HG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH--CC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH--cc
Confidence            5799999999999999999999998  74

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.4e-07  Score=56.14  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |++|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           15 CNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888899999999999999998864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.37  E-value=2e-07  Score=51.27  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      |+.||+.|...+.|..|+++|++++||.
T Consensus         5 C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            5 CPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            7789999999999999999999999874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.37  E-value=1.6e-07  Score=49.03  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      ++||+|+.|++.|.+.+.|..|+++  |+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRG--HS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTT--CC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHh--cC
Confidence            5799999999999999999999998  74

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.8e-07  Score=55.63  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=25.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667788888889999999999999988863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.6e-07  Score=55.84  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6677788888888999998999888888863

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.6e-07  Score=55.75  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           15 CGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888899999999999999988863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.5e-07  Score=55.30  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           15 CCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             ETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            667778888888888888888888888874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=1.9e-07  Score=54.98  Aligned_cols=30  Identities=27%  Similarity=0.260  Sum_probs=25.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A           15 CNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            667888888899999999999999998764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=3.3e-08  Score=68.06  Aligned_cols=41  Identities=15%  Similarity=0.382  Sum_probs=36.5

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccchh
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (267)
                      .++++||.|+.|++.|.+...|..|+++  |++++| .|..|.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNI--HNEEFQKRAKRQER   61 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHH--HHHHHHHHCCCCSC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHH--hCCCCCcccchhhh
Confidence            4689999999999999999999999999  998888 8887654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=2.3e-07  Score=48.68  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.8

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      ++||.|+.|++.|...+.|..|+++  |++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV--HTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT--SCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh--cCC
Confidence            5799999999999999999999998  864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.7e-07  Score=55.11  Aligned_cols=30  Identities=20%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           15 CSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            667778888888888998889888888874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=2.4e-07  Score=55.69  Aligned_cols=30  Identities=30%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      |++|++.|...+.|..|+++|++++||.|.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (48)
T 2epr_A           15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG   44 (48)
T ss_dssp             ETTTTEEESSHHHHHHHGGGSCSCCCCCSC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCccCC
Confidence            555666666666666666666666666644

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.9e-07  Score=55.49  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |++|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A           15 CSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5566677777777777877777777777753

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.34  E-value=2.3e-07  Score=57.30  Aligned_cols=39  Identities=23%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             ccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           23 QFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        23 ~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      .|.+...|..|+++  |+++++ .|+.||+.|.+.++|..|+
T Consensus         5 ~~~~~~~l~~h~~~--H~~~k~~~C~~C~k~f~~~~~L~~H~   44 (54)
T 1yui_A            5 RAKHPPGTEKPRSR--SQSEQPATCPICYAVIRQSRNLRRHL   44 (54)
T ss_dssp             CCSCSSCCCCCHHH--HTSSCCEECTTTCCEESSHHHHHHHH
T ss_pred             ccCCCcchhhHHHh--cCCCCCccCCCCCcccCCHHHHHHHH
Confidence            34444444444444  444444 4444444444444444444

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=2.1e-07  Score=55.26  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A           15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             ETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778888888899999999999999988863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.8e-07  Score=54.40  Aligned_cols=29  Identities=24%  Similarity=0.254  Sum_probs=24.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      |+.|++.|...+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           14 CETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            66778888888899999999999988876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.8e-07  Score=55.54  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=26.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A           15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             CcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888888899999999999999998863

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=2.3e-07  Score=52.65  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=29.9

Q ss_pred             CCCCccccc--cCccccCChHHHHHHHhHhcCCCCCC
Q 024455           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        10 ~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +++++|.|+  .|++.|.+.+.|..|+++  |+++++
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~   36 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK--HEMTLK   36 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH--HHTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHH--hCCCCC
Confidence            578999999  699999999999999999  988764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.32  E-value=3.4e-07  Score=48.29  Aligned_cols=28  Identities=29%  Similarity=0.660  Sum_probs=26.0

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH--HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH--hcCC
Confidence            589999999999999999999999  8875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=2.7e-07  Score=54.53  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=23.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|+++++|.|+.
T Consensus        13 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   43 (45)
T 2epq_A           13 CPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS   43 (45)
T ss_dssp             ETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence            6667777777888888888888888887654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.32  E-value=2.4e-07  Score=48.96  Aligned_cols=29  Identities=34%  Similarity=0.687  Sum_probs=26.5

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      +||.|+.|++.|...+.|..|+++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL--HENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG--GGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH--hcCCC
Confidence            689999999999999999999999  88753

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.5e-07  Score=55.98  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=22.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |+.|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A           15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5566677777777777777777777777653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.30  E-value=3.8e-07  Score=49.47  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=27.4

Q ss_pred             CCccccc--cCccccCChHHHHHHHhHhcCCCCC
Q 024455           12 TARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        12 ~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      ++||.|+  .|++.|.+.+.|..|+++  |++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHH--ccCCC
Confidence            5799999  899999999999999999  98763

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.30  E-value=2.6e-07  Score=52.23  Aligned_cols=32  Identities=25%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             CCCCccccc--cCccccCChHHHHHHHhHhcCCCCC
Q 024455           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        10 ~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      ++++||.|+  .|++.|.+++.|..|+++  |++++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~ek   37 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRW--HTGER   37 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHH--HHTTC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCCC
Confidence            589999998  599999999999999999  88753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.3e-07  Score=55.18  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=24.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      |++|++.|...+.|..|+++|++++||.|+.
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5567777778888888888888888888763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.1e-08  Score=66.88  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             HHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCC
Q 024455           30 LIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        30 l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |..|+++  |.+.++ .|..|++.|. ...|..|+    .+++.            |+.|++.|. ...|..|+++|.++
T Consensus         5 L~~H~~~--~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~------------C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEET--ECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTEL------------CGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCC--CCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEE------------CSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcc--cCCCcccCCcccChHhh-HHHHHHHHhHcCCCceE------------cccCCCcCc-HHHHHHHHHHccCC
Confidence            4445555  555555 5666655553 55555554    23333            334455444 35666666666554


Q ss_pred             C
Q 024455          105 A  105 (267)
Q Consensus       105 ~  105 (267)
                      +
T Consensus        69 ~   69 (75)
T 2d9k_A           69 G   69 (75)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.9e-07  Score=54.67  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=26.5

Q ss_pred             ccccccccCChhhHHHHHHHhcC-CCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL-SAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~-~~~~~C~  110 (267)
                      |+.|++.|...+.|..|+++|++ ++||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           15 CNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            66788888899999999999999 9999885

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.27  E-value=5.7e-07  Score=48.40  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=26.5

Q ss_pred             Cccccc--cCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      +||.|+  .|++.|.+.+.|..|+++  |++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH--hcCCC
Confidence            589998  999999999999999999  98763

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2.5e-07  Score=53.67  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=21.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      |+.||+.|...+.|..|+++|++++||.|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           14 CDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55667777777788888888888888775

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.26  E-value=3.7e-08  Score=53.90  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=27.7

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      +||.|+.|++.|.+.+.|..|+++  |++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT--AFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS--SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH--HccCCC
Confidence            589999999999999999999999  998765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.25  E-value=5e-07  Score=47.91  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      ++|.|+.|++.|...+.|..|+++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT--KHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH--HTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH--HccCC
Confidence            589999999999999999999999  87664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=3.8e-07  Score=48.00  Aligned_cols=29  Identities=38%  Similarity=0.652  Sum_probs=26.4

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      +||.|+.|++.|.....|..|+++  |++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI--HSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH--HHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH--hcCCC
Confidence            589999999999999999999999  87753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=50.32  Aligned_cols=29  Identities=28%  Similarity=0.571  Sum_probs=26.7

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      ++||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI--HTGE   29 (30)
Confidence            4799999999999999999999999  8765

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=2.9e-07  Score=53.52  Aligned_cols=29  Identities=24%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      |+.|++.|...+.|..|+++|++++||+|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           14 CEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            55677778888888888888888888876

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.22  E-value=5.4e-07  Score=51.41  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=27.0

Q ss_pred             cccccccccCChhhHHHHHHHhcCCCCccc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~~~C  109 (267)
                      .|+.||+.|...+.|..|+++|++++||.+
T Consensus         8 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            8 TCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            378899999999999999999999999864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=1.6e-07  Score=49.73  Aligned_cols=28  Identities=32%  Similarity=0.632  Sum_probs=25.9

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ--HTGE   28 (29)
Confidence            589999999999999999999999  8865

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=6.3e-07  Score=47.64  Aligned_cols=29  Identities=41%  Similarity=0.671  Sum_probs=25.9

Q ss_pred             CccccccCccccCChHHHHHH-HhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEH-MKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H-~~~~~H~~~~   43 (267)
                      +||.|+.|++.|.+.+.|..| +++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~--H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI--HSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT--SCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH--ccCCC
Confidence            589999999999999999999 688  88763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.21  E-value=4.1e-07  Score=47.86  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=25.9

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI--HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH--HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH--hccC
Confidence            589999999999999999999999  8765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.19  E-value=8.8e-07  Score=45.81  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=23.8

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      ||+|+.|++.|.+.+.|..|+++  |+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~--h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV--HKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG--TCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH--cCCC
Confidence            68999999999999999999999  8763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=2e-07  Score=62.03  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=45.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      ..+++++.|+.|++.|. ...|..|+ .  |.+++| .|+.|++.|. ...|..|+
T Consensus        12 ~c~~r~~~C~~C~~~~~-~~~L~~H~-~--~c~~~~~~C~~C~~~~~-~~~l~~H~   62 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLELS-ILKLKEHE-D--YCGARTELCGNCGRNVL-VKDLKTHP   62 (75)
T ss_dssp             CCCCCCEECSSSCCEEC-HHHHHHHH-H--HHHHCEEECSSSCCEEE-TTGGGTHH
T ss_pred             cCCCcccCCcccChHhh-HHHHHHHH-h--HcCCCceEcccCCCcCc-HHHHHHHH
Confidence            36899999999999995 99999999 8  999999 9999999987 48899997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=3.2e-07  Score=47.22  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=23.8

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |||.|+.|++.|.+.+.|..|+++  |+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~--H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH--HD   26 (26)
Confidence            589999999999999999999998  64

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.10  E-value=6.9e-07  Score=50.29  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhcCCCCCCC
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHLTGPLSKA   70 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~   70 (267)
                      +.+++| +|++||+.|.++++|.+|+  ||.|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~--py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ--AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH--HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC--CeECc
Confidence            456667 7777777777777777776  55553

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.09  E-value=1.5e-06  Score=47.95  Aligned_cols=27  Identities=30%  Similarity=0.424  Sum_probs=23.2

Q ss_pred             cccccccccCChhhHHHHHHHhcCCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      .|+.|++.|.+.+.|..|+++|++++|
T Consensus         9 ~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            9 VCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             ECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            377888899999999999999998875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.08  E-value=8.6e-07  Score=52.97  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=22.4

Q ss_pred             ccccccCChhhHHHHHHHhcCCCCccccc
Q 024455           83 LCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~~~~~~C~~  111 (267)
                      .|++.|...+.|..|+++|++++||+|..
T Consensus        19 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A           19 GCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             SCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57777777888888888888888887753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2e-06  Score=48.23  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      |+.|++.|...+.|..|+++|++++|
T Consensus        12 C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A           12 CPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            77788889999999999999998875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.05  E-value=8.6e-07  Score=52.99  Aligned_cols=32  Identities=25%  Similarity=0.581  Sum_probs=28.8

Q ss_pred             CCCCccccc--cCccccCChHHHHHHHhHhcCCCCC
Q 024455           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        10 ~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      ++++||.|+  .|++.|.+++.|..|+++  |++++
T Consensus        14 ~~~k~~~C~~~~C~k~F~~~~~L~~H~~~--H~~ek   47 (47)
T 1ncs_A           14 MPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHH--ccCCC
Confidence            589999995  799999999999999999  88763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.03  E-value=1.3e-07  Score=51.62  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPV  107 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~  107 (267)
                      |+.||+.|...++|..|+++|++++|+
T Consensus         5 C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            5 CPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            777888899999999999999999886

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.02  E-value=3.1e-06  Score=44.35  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.||+.|...+.|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7889999999999999999998864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.01  E-value=2.5e-06  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.531  Sum_probs=22.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      |+.|++.|...+.|..|+++|++++|
T Consensus        10 C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A           10 CRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            77788888889999999999988765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.01  E-value=3.2e-06  Score=44.57  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             cccccccccCChhhHHHHHHHhcCCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      .|+.||+.|...+.|..|+++|+++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            4 QCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             cCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            378899999999999999999998764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.99  E-value=2.5e-06  Score=44.77  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.1

Q ss_pred             cccccccccCChhhHHHHHHHhcCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|+.||+.|...+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            4 ACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             ECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            37889999999999999999998864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=3.5e-06  Score=44.10  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             cccccccccCChhhHHHHHHHhcCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|+.|++.|...+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            4 KCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             ECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCccCChhHHHHHHHHhcCCC
Confidence            37889999999999999999998874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.95  E-value=3.9e-06  Score=43.94  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.8

Q ss_pred             Cccccc--cCccccCChHHHHHHHhHhcCCC
Q 024455           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      ++|.|+  .|++.|...+.|..|+++  |++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~--H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI--HTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG--GTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH--hCC
Confidence            589999  999999999999999999  864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.94  E-value=8.6e-07  Score=60.83  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=36.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCccccccCcchhhhhhhccccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAID  127 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~C~~~f~~~~~l~~H~~~~~  127 (267)
                      |+.|++.|...+.|..|+++|++++||.|.. +....+|..|.+.+.
T Consensus        28 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~-~~~~~~~~~~~~~~~   73 (88)
T 1x6f_A           28 CKHCDSKLQSTAELTSHLNIHNEEFQKRAKR-QERRKQLLSKQKYAD   73 (88)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHHHHHHHCCC-CSCCCCCCCCCCCCC
T ss_pred             CCCCCCEeCCHHHHHHHHHHhCCCCCcccch-hhhHHHHHhhhcccc
Confidence            7778889999999999999999999999965 455666666664443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.94  E-value=3.1e-06  Score=43.61  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=21.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |+.||+.|...+.|..|+++|+++
T Consensus         4 C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            4 CGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CCCCCCcCCCHHHHHHHHHHcCCC
Confidence            788999999999999999999764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=4.5e-06  Score=43.60  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            5 CPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            7788999999999999999998874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5.5e-06  Score=45.94  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           12 CDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             cCcCCCCcCchHHHHHHHHHhcCCC
Confidence            7778888999999999999998774

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.92  E-value=4.5e-06  Score=43.98  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.||+.|...+.|..|+++|++++
T Consensus         6 C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            6 CDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhccCC
Confidence            7889999999999999999998864

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.91  E-value=5e-06  Score=46.82  Aligned_cols=28  Identities=21%  Similarity=0.384  Sum_probs=24.9

Q ss_pred             cc--ccccccCChhhHHHHHHHhcCCCCcc
Q 024455           81 CN--LCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        81 C~--~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      |+  .|++.|.+.++|..|+++|++++||.
T Consensus         9 C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            9 CTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            66  59999999999999999999999863

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.11  E-value=1.7e-06  Score=45.60  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.||+.|...+.|..|+++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            5 CVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            7889999999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=6.4e-06  Score=45.75  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A           12 CEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCceeCCHHHHHHHHHHhCCCC
Confidence            7788888999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.86  E-value=6.2e-06  Score=44.11  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             cccccccCChhhHHHHHHHhcCCC
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      +.||+.|...+.|..|+++|++++
T Consensus         8 ~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            8 SYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             TTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCcccCCHhHHHHHHHHhcCCC
Confidence            389999999999999999999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=7.2e-06  Score=45.46  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A           12 CPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCC
Confidence            6778888888899999999998764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.84  E-value=3.4e-06  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=13.5

Q ss_pred             ccccccccCChhhHHHHHHHhcC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |+.|++.|...+.|..|+++|++
T Consensus        14 C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           14 CPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCCcccCcHHHHHHHHHHhcc
Confidence            44455555666666666666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=8.2e-06  Score=46.40  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             ccc--cccccCChhhHHHHHHHhcCC
Q 024455           81 CNL--CMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~--C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |+.  |++.|.+++.|..|+++|+++
T Consensus        12 C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           12 CPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            554  889999999999999999876

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=5.9e-06  Score=45.89  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A           12 CHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCC
Confidence            6677788888888888888887764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=9.2e-06  Score=45.08  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|...+.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A           12 CSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCchhCCHHHHHHHHHHhccCC
Confidence            6778888888888888988888764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3e-06  Score=44.80  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.||+.|...+.|..|+++|++++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            6 CIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            7788999999999999999998764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.79  E-value=1.1e-05  Score=43.31  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=22.2

Q ss_pred             cc--ccccccCChhhHHHHHHHhcCCC
Q 024455           81 CN--LCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~--~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+  .||+.|...+.|..|+++|++++
T Consensus         6 C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            6 CDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            66  78999999999999999999874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=1e-05  Score=45.22  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             ccccccccCCh-hhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSP-SSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~-~~L~~H~~~h~~~~  105 (267)
                      |+.|++.|... +.|..|+++|++++
T Consensus        12 C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A           12 CPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCChhhccCHHHHHHHHHhcCCCC
Confidence            67788888888 89999999998764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.73  E-value=9.7e-06  Score=42.08  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             ccccccccCChhhHHHHHHHhcC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |+.|++.|...+.|..|+++|++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            6 CSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCC
Confidence            77888899999999999998864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.72  E-value=1.3e-05  Score=41.26  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             cccccccccCChhhHHHHHHHhc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      .|+.||+.|...+.|..|+++|+
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            5 SCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCCCcChhhCCHHHHHHHHHHcc
Confidence            37788899999999999999884

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.72  E-value=1e-05  Score=42.68  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=21.8

Q ss_pred             ccccccccCChhhHHHH-HHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKH-KEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H-~~~h~~~~  105 (267)
                      |+.||+.|.+.+.|..| +++|++++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            5 CGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcccCcccCChHHHHHHHHHHccCCC
Confidence            77889999999999999 78998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.68  E-value=1.1e-05  Score=41.58  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |+.||+.|...+.|..|+++|+
T Consensus         6 C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            6 CPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             ETTTTEEESCHHHHHHHHTTCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcC
Confidence            7788888999999999998874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.64  E-value=2.2e-05  Score=43.93  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             cc--ccccccCChhhHHHHHHHhcCCC
Q 024455           81 CN--LCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~--~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+  .||+.|...+.|..|+++|++++
T Consensus        11 C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A           11 CHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            55  48889999999999999998874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.76  E-value=8.6e-06  Score=41.55  Aligned_cols=22  Identities=27%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |+.||+.|...+.|..|+++|+
T Consensus         5 C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            5 CERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            7788888999999999998874

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.54  E-value=3.9e-05  Score=49.31  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=22.8

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      |.+|++.|.+.++|..|+++|+++..
T Consensus        16 C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           16 CGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            67788899999999999999998753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.48  E-value=4.2e-05  Score=39.73  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.8

Q ss_pred             cc--ccccccCChhhHHHHHHHhcC
Q 024455           81 CN--LCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~--~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |+  .||+.|...+.|..|+++|++
T Consensus         5 C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            5 CHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             ECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CcCCcCcCccCCHHHHHHHHHHhCC
Confidence            77  899999999999999999964

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.45  E-value=4.1e-05  Score=45.69  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             ccccccccCChhhHHHHHH-HhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKE-ACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~-~h~~~~~  106 (267)
                      |.+||+.|...++|..|++ +|+++.+
T Consensus        10 C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A           10 CDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            7778899999999999999 9988764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.40  E-value=6.3e-05  Score=41.93  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=16.9

Q ss_pred             ccccccccCChhhHHHH-HHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKH-KEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H-~~~h~~~  104 (267)
                      |+.|++.|...+.|..| +++|+++
T Consensus        12 C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A           12 CSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHccCc
Confidence            55667777777777777 7777654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.35  E-value=6.9e-05  Score=44.37  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             cccccccCChhhHHHHHHHhcCCC
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      +.||+.|...++|..|+++|++++
T Consensus        24 ~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           24 PGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCCccCCHHHHHHHHHHccCCC
Confidence            368888999999999999998874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.75  E-value=0.0005  Score=49.55  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             CCCCCCCCccccccCccccCChHHHHHHHhH
Q 024455            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus         6 ~~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +.-.+|+++|.|..|++.|.+.+.|..|+++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3335688888888888888888888888876

>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}

Probab=96.66  E-value=0.0027  Score=49.47  Aligned_cols=97  Identities=13%  Similarity=0.056  Sum_probs=61.8

Q ss_pred             eeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCC-CCCccccccc--cccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP-QLPVTNYRYE--VTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P-~~~i~~~~~~--~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      -+.+|||+++.+...++   ..+-+|..+|.+.|...... ...+.+|..+  +.++...-.....+++++..+|.+||.
T Consensus        24 r~FlDTEFt~d~~~~eL---ISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L~~FL~  100 (190)
T 4hec_A           24 RYFYDTEFIEDGHTIEL---ISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFLR  100 (190)
T ss_dssp             EEEEEEEEEECSSCEEE---EEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHHHHHHTT
T ss_pred             EEEEeeeecCCCCCCCE---EEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHHHHHHHH
Confidence            47899999985554444   44445567777766544321 2334444432  455554333444689999999999994


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      ....         ....|+|++..+|..+|.-
T Consensus       101 ~~~~---------~~~eLwa~~~~yD~~~L~q  123 (190)
T 4hec_A          101 IDGT---------DSIELWAWVGAYDHVALCQ  123 (190)
T ss_dssp             TTSS---------CEEEEEESSCHHHHHHHHT
T ss_pred             hcCC---------CCCEEEEecccccHHHHHH
Confidence            2111         2346999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0071  Score=38.30  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=18.9

Q ss_pred             ccCccccCChHHHHHHH-hHhcCCCCC
Q 024455           18 VACYKQFKRKDHLIEHM-KISYHSVHQ   43 (267)
Q Consensus        18 ~~C~k~f~~~~~l~~H~-~~~~H~~~~   43 (267)
                      ..|++.|.+...|..|+ +.  |.+.+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~--Hv~~~   31 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKD--HVSQD   31 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHH--SCCCC
T ss_pred             CCCCCcCCCHHHHHHHHHhh--ccCcc
Confidence            56889999999999998 46  77654

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*

Probab=95.79  E-value=0.016  Score=53.55  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             ceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhc
Q 024455          136 KAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (267)
Q Consensus       136 ~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~  214 (267)
                      .++++|.|++|... .+++..++.+ +  ..+...   ++.+ .   .     .+++   +.++++++++++.|.+++.+
T Consensus        27 ~~va~DtEttgl~~~~~~iv~I~~~-~--~~g~~~---yip~-~---~-----~~~~---~~~~l~~~~vl~~L~~~L~d   88 (605)
T 2kfn_A           27 PVFAFDTETDSLDNISANLVGLSFA-I--EPGVAA---YIPV-A---H-----DYLD---APDQISRERALELLKPLLED   88 (605)
T ss_dssp             SSEEEEEEESCSCTTTCCEEEEEEE-E--ETTEEE---EEEC-C---C-----CSTT---CCCCCCHHHHHHHHHHHHTC
T ss_pred             CeEEEEEecCCCCcccCceEEEEEE-E--cCCcEE---EEec-c---c-----cccc---cccccCHHHHHHHHHHHHcC
Confidence            56899999999864 3444333322 2  123222   2311 1   1     0111   12456789999999999943


Q ss_pred             CCCCCcccccCCCceEEEeccchhhhccccc---cCCCCceecccccc
Q 024455          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRM---NYPDHMLRDTAKYR  259 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~---~~~~~~~~dt~~~~  259 (267)
                                  .+.++||||+.||+.+|.-   ..+. .++||.+..
T Consensus        89 ------------~~i~kV~hnak~D~~~L~~~Gi~l~~-~~~DT~laa  123 (605)
T 2kfn_A           89 ------------EKALKVGQNLKYDRGILANYGIELRG-IAFDTMLES  123 (605)
T ss_dssp             ------------TTSCEEESSHHHHHHHHHTTTCCCCC-EEEEHHHHH
T ss_pred             ------------CCCeEEEECcHHHHHHHHHCCCCCCC-ccccHHHHH
Confidence                        3458999999999999953   3332 478987543

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*

Probab=95.75  E-value=0.0093  Score=56.05  Aligned_cols=84  Identities=17%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             eeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcCC
Q 024455          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (267)
Q Consensus       137 ~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~~  216 (267)
                      ++++|.|++|......  .+..+.+.+......+  .+.|                .      .++++++.|.+++.   
T Consensus         1 ~vv~D~ETtGl~~~~d--~i~~iqi~~~~~~~~~--~~~p----------------~------~i~~~l~~L~~~l~---   51 (698)
T 1x9m_A            1 MIVSDIEANALLESVT--KFHCGVIYDYSTAEYV--SYRP----------------S------DFGAYLDALEAEVA---   51 (698)
T ss_dssp             CEEEEEEESSCGGGCC--CEEEEEEEETTTTEEE--EECG----------------G------GHHHHHHHHHHHHH---
T ss_pred             CEEEEcCCCCcCCCCC--EEEEEEEEecCCCcEE--EECh----------------H------HHHHHHHHHHHHHh---
Confidence            3789999999864332  3456666654322221  1111                1      23456778888883   


Q ss_pred             CCCcccccCCCceEEEeccc-hhhhcccc----------ccCCCCceecccccc
Q 024455          217 STGRLMLDDGKARLLVGHGL-EHDLDSLR----------MNYPDHMLRDTAKYR  259 (267)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~----------~~~~~~~~~dt~~~~  259 (267)
                                .+.++||||+ .||+.+|.          +..+...++||.+..
T Consensus        52 ----------~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaa   95 (698)
T 1x9m_A           52 ----------RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLS   95 (698)
T ss_dssp             ----------TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHH
T ss_pred             ----------cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHH
Confidence                      2468999999 99999994          323313588998544

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.41  E-value=0.018  Score=33.48  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.8

Q ss_pred             CccccccCccccCChHHHHHHHhH
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      -+|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            689999999999999999999986

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.01  Score=37.54  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=20.5

Q ss_pred             cccccCChhhHHHHH-HHhcCCC------Ccc-----ccccCcchhhhhhhc
Q 024455           84 CMNIFDSPSSLIKHK-EACSLSA------PVP-----FEKTLSNAESQKKIS  123 (267)
Q Consensus        84 C~~~F~~~~~L~~H~-~~h~~~~------~~~-----C~~~f~~~~~l~~H~  123 (267)
                      |++.|.+...|..|+ +.|.+.+      +|.     |++.+.....|..|+
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hi   60 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHI   60 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhc
Confidence            555566666666665 3454443      232     455444445555554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.15  E-value=0.013  Score=42.55  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             CCccccccCccccCChHHHHHHH--hHhcCCCC-CC-Ccccc-------hhhcCCHHHHHhhcCCCCCCCcCCccccccc
Q 024455           12 TARHKCVACYKQFKRKDHLIEHM--KISYHSVH-QP-KCAVC-------QKLSKSFESLREHLTGPLSKAHCSGIFSDRG   80 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~--~~~~H~~~-~~-~C~~C-------~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~   80 (267)
                      .+++.|..|...|.+.+.+..|.  +.  |... +. .+ .+       ++.+....    +.      .. ...-....
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkk--H~~~v~~~~~-~~~~~~~~~~~~~~~~~----~~------~~-~~~~~~~~   95 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMA-INQGEDSVPAKKFKAAP----AE------IS-DGEDRSKC   95 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHH--HHHHHHHHHH-HTTCCCCCSCCCCSCCS----SC------CS-SCCCTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHH--HHHHHHHHhc-ccCcccCCCCCccCCCc----cc------cc-cCCCCCeE
Confidence            36789999999999999999998  44  4321 11 11 01       11111000    00      00 00001113


Q ss_pred             ccccccccCChhhHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~   99 (267)
                      |..|++.|.+...|..|..
T Consensus        96 C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           96 CPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             ETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCEeCCHHHHHHHHC
Confidence            9999999999999999974

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.75  E-value=0.048  Score=31.66  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=18.2

Q ss_pred             cccccccccCChhhHHHHHHHh
Q 024455           80 GCNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      .|+.|+..|.....|+.||+-.
T Consensus        14 ~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           14 ICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             eCCcccccccchHHHHhhhhhc
Confidence            3888899999999999999743

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.41  E-value=0.016  Score=41.64  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=16.0

Q ss_pred             ccccccccCChhhHHHHHHHh
Q 024455           81 CNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      |..|++.|.+.+.|..|+++.
T Consensus        53 C~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           53 CLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             ETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCcchhCCHHHHHHHHhhh
Confidence            566778888888888887643

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A

Probab=91.62  E-value=0.37  Score=45.78  Aligned_cols=86  Identities=10%  Similarity=0.058  Sum_probs=54.4

Q ss_pred             CCCceeeeeccccCCcC-CCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ....+.++|.|+.+..+ ......+..+++.+..+..++..  +             .+..+.+...++..+++..+.++
T Consensus       133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~--~-------------~i~~~~v~~~~~E~~LL~~f~~~  197 (775)
T 1qht_A          133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITW--K-------------KIDLPYVDVVSTEKEMIKRFLRV  197 (775)
T ss_dssp             CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEES--S-------------CCCCSSEEECSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEee--c-------------cccccceEEcCCHHHHHHHHHHH
Confidence            35577999999998432 22334455666655444332210  1             12222455668889999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      +..      .+|     .+|||||+ .|||.+|.
T Consensus       198 i~~------~dP-----DiivGyN~~~FDlpyL~  220 (775)
T 1qht_A          198 VRE------KDP-----DVLITYNGDNFDFAYLK  220 (775)
T ss_dssp             HHH------HCC-----SEEEESSTTTTHHHHHH
T ss_pred             HHh------cCC-----CEEEEeCCCCccHHHHH
Confidence            942      222     39999998 68999984

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1

Probab=91.52  E-value=0.52  Score=45.21  Aligned_cols=95  Identities=14%  Similarity=0.051  Sum_probs=55.4

Q ss_pred             cCCCceeeeeccc-cCC--cCCCC---ccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHH
Q 024455          132 CRGPKAVAMDCEM-VGG--GSNGT---LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (267)
Q Consensus       132 ~~~~~~~~~dcE~-~g~--~~~~~---~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~  205 (267)
                      ...-.+.++|.|+ ++.  .+...   ...+..+.+++.++...+ ..+++... ......   |....+...++..+++
T Consensus       187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~---i~~~~v~~~~~E~~LL  261 (847)
T 1s5j_A          187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVK---LDGISVERFNTEYELL  261 (847)
T ss_dssp             CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEE---ETTEEEEEESSHHHHH
T ss_pred             CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccC---CCCCeEEEeCCHHHHH
Confidence            3455779999999 642  22222   134566666655553322 12333210 000011   2223345557899999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          206 DKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      ..+.+++.+            - .+|||||. .|||.+|.
T Consensus       262 ~~f~~~i~~------------~-diivgyN~~~FDlPyL~  288 (847)
T 1s5j_A          262 GRFFDILLE------------Y-PIVLTFNGDDFDLPYIY  288 (847)
T ss_dssp             HHHHHHHTT------------C-SEEEESSTTTTHHHHHH
T ss_pred             HHHHHHhcc------------C-CEEEEeCCCCchHHHHH
Confidence            999999942            2 29999998 68999994

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.46  E-value=0.17  Score=27.36  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=23.9

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      .|.|+.|-+.|.+...|..|.... |...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~-H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV-HDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH-TSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc-cccC
Confidence            499999999999999999998764 7643

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*

Probab=90.80  E-value=1.4  Score=38.08  Aligned_cols=101  Identities=8%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CCCceeeeeccccCCcCCCC---ccceeeEEEecCCCCeeEe-cccCC-CCCcccccc---------ccccCCHH---hh
Q 024455          133 RGPKAVAMDCEMVGGGSNGT---LDLCARVCLVDEDENVIFH-TYVQP-QLPVTNYRY---------EVTGLTEE---DI  195 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~~~~~---~~~i~~v~vvd~~~~~~~~-~~v~P-~~~i~~~~~---------~~~GIt~~---~l  195 (267)
                      +...+.++|.|+.+.++...   ...+..+++.+..+..... .++++ .....++..         .+....+.   .+
T Consensus       104 p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v  183 (388)
T 1noy_A          104 KFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRV  183 (388)
T ss_dssp             GGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred             CCeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCe
Confidence            45567899999988323221   2356677777665543211 12332 111111111         01111111   11


Q ss_pred             --ccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          196 --KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       196 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                        ....+..+++..+.+++..      .+|     .||+|||+ .|||.+|.
T Consensus       184 ~v~~~~~E~~LL~~f~~~i~~------~dP-----Dii~GyN~~~FDlpyL~  224 (388)
T 1noy_A          184 IYMPFDNERDMLMEYINLWEQ------KRP-----AIFTGWNIEGFDVPYIM  224 (388)
T ss_dssp             EEEEESCHHHHHHHHHHHHHH------SCC-----SEEECSSTTTTHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHH------hCC-----cEEEecCCCCccHHHHH
Confidence              2456889999999999942      122     39999998 68999984

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.64  E-value=0.097  Score=30.25  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=13.5

Q ss_pred             CCCCcCCccccccc--------cccccc
Q 024455           67 LSKAHCSGIFSDRG--------CNLCMN   86 (267)
Q Consensus        67 ~~C~~C~k~f~~~~--------C~~C~~   86 (267)
                      |.|-.||+.|+...        |+.||.
T Consensus         4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy   31 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY   31 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred             EEeeccCCCccHHHHhhCCCcccCccCc
Confidence            66777777777653        788874

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.89  E-value=0.36  Score=26.23  Aligned_cols=28  Identities=14%  Similarity=0.382  Sum_probs=23.7

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhH
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ......+.|..|.-+|+.-..+..|++-
T Consensus         3 ~~~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            3 AAEVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CCccCcCeeccccceehhhHHHhhhhee
Confidence            3456688999999999999999999875

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.88  E-value=0.21  Score=33.27  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      |-+||+.|.   .|.+|+++|+|-.|.+
T Consensus        24 ClecGK~fK---~LkRHL~~~hgltpee   48 (87)
T 2jsp_A           24 CLECGGSFK---SLKRHLTTHHSMTPEE   48 (87)
T ss_dssp             CTBTCCEES---BHHHHHHHTTCSCHHH
T ss_pred             ecccchhhH---HHHHHHHHccCCCHHH
Confidence            888999998   5889999988887755

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=84.76  E-value=0.6  Score=25.17  Aligned_cols=22  Identities=41%  Similarity=0.712  Sum_probs=18.5

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |++|.+.|.+...|..|-...|
T Consensus         8 CP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            8 CPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHT
T ss_pred             CcHHHHHcCCHHHHHHHHHhcc
Confidence            8999999999999999965433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=84.52  E-value=0.44  Score=36.08  Aligned_cols=83  Identities=17%  Similarity=0.340  Sum_probs=38.8

Q ss_pred             ccccCccccCChH-----HHHHHHhHhcCCCCCC-Cc--ccchhhcCCHHHHHhhcC----CCCCCCcCCcccccc----
Q 024455           16 KCVACYKQFKRKD-----HLIEHMKISYHSVHQP-KC--AVCQKLSKSFESLREHLT----GPLSKAHCSGIFSDR----   79 (267)
Q Consensus        16 ~C~~C~k~f~~~~-----~l~~H~~~~~H~~~~~-~C--~~C~~~f~~~~~l~~H~~----~~~~C~~C~k~f~~~----   79 (267)
                      .|+.|...+....     .+..-+.      ... .|  .-|+..+. ...+..|..    .+..|+.|+..+...    
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~------~l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~  127 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREIL------SLMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPFQKFHINI  127 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHH------TSEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEEEGGGHHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHh------hcccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHHHHHHHHH
Confidence            7888877765431     1111111      122 56  35665543 456777761    223354444444332    


Q ss_pred             -----------cccccccccCChhhHHHHHHHhcCCCC
Q 024455           80 -----------GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        80 -----------~C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                                 .|+.|+..|. ...|..|+.++.|+.+
T Consensus       128 H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          128 HILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALE  164 (170)
T ss_dssp             HHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC---
T ss_pred             HhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhh
Confidence                       1555555443 3445555555555443

>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...

Probab=84.39  E-value=2.6  Score=40.56  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=61.6

Q ss_pred             CCceeeeeccccCCc-CC---CCccceeeEEEecCCCCeeEec--ccCCCCCccccccc---------cccCCHHhhcc-
Q 024455          134 GPKAVAMDCEMVGGG-SN---GTLDLCARVCLVDEDENVIFHT--YVQPQLPVTNYRYE---------VTGLTEEDIKN-  197 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~-~~---~~~~~i~~v~vvd~~~~~~~~~--~v~P~~~i~~~~~~---------~~GIt~~~l~~-  197 (267)
                      .-+..++|.|....+ +.   .....|..|++.|..+...+-.  +..|...+.+|...         -..+..+.+.+ 
T Consensus       107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  186 (903)
T 3qex_A          107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKI  186 (903)
T ss_dssp             GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred             cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCe
Confidence            445688999987633 22   2246678888888877665442  22233333334321         12244444443 


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccc
Q 024455          198 ----AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSL  243 (267)
Q Consensus       198 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l  243 (267)
                          -.+-.+++..+.+++..      .+|     .||+|||+ .|||.+|
T Consensus       187 ~v~~f~sE~eLL~~F~~~I~~------~DP-----DIItGyN~~~FDlPYL  226 (903)
T 3qex_A          187 IYMPFDNEKELLMEYLNFWQQ------KTP-----VILTGWNVESFAIPYV  226 (903)
T ss_dssp             EEEEESSHHHHHHHHHHHHHH------TCC-----SEEECSSTTTTHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHH------hCC-----CEEEecCCccCCHHHH
Confidence                35788999999999942      222     39999998 6899998

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.74  E-value=0.47  Score=32.73  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=15.8

Q ss_pred             CcccchhhcCCHHHHHhhcCCCCCCCcCCcc
Q 024455           45 KCAVCQKLSKSFESLREHLTGPLSKAHCSGI   75 (267)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~   75 (267)
                      +|..||..|.      .-+.+|-.|+.|+..
T Consensus        69 ~C~~CG~~F~------~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           69 QCRKCGFVFK------AEINIPSRCPKCKSE   93 (105)
T ss_dssp             BBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred             ChhhCcCeec------ccCCCCCCCcCCCCC
Confidence            8888888881      122456667777544

>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A

Probab=82.05  E-value=0.4  Score=42.22  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CceEEEeccchhhhccc-------------------cccCCCCceecccccc
Q 024455          227 KARLLVGHGLEHDLDSL-------------------RMNYPDHMLRDTAKYR  259 (267)
Q Consensus       227 ~~~~lvgh~~~~Dl~~l-------------------~~~~~~~~~~dt~~~~  259 (267)
                      .+++|||||.-.||-+|                   .-.+|  .|+||-.+.
T Consensus       280 s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP--~i~DTK~la  329 (430)
T 2a1r_A          280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP--RLLDTKLMA  329 (430)
T ss_dssp             HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCS--SEEEHHHHH
T ss_pred             CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCC--ceeehHHhh
Confidence            56899999999999876                   22568  689997654

>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}

Probab=81.87  E-value=0.47  Score=46.03  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             CceEEEeccchhhhccccc----cCCCCceeccc
Q 024455          227 KARLLVGHGLEHDLDSLRM----NYPDHMLRDTA  256 (267)
Q Consensus       227 ~~~~lvgh~~~~Dl~~l~~----~~~~~~~~dt~  256 (267)
                      ..+|||||||.||...++=    .-.+...+||-
T Consensus       193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTM  226 (1172)
T 3ikm_A          193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTM  226 (1172)
T ss_dssp             SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTT
T ss_pred             CccEEEeCCcchhHHHHHHHHhcccCCceeeech
Confidence            5689999999999988853    33466777874

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=81.55  E-value=0.97  Score=26.95  Aligned_cols=22  Identities=14%  Similarity=0.415  Sum_probs=17.9

Q ss_pred             cccccCccccCChHHHHHHHhH
Q 024455           15 HKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      -.|..|+..|..+..++.|+-+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccccccCcccccccchhhhhcc
Confidence            4888888888888888888744

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=81.24  E-value=1.2  Score=31.93  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=20.3

Q ss_pred             CCCCccccccCccccCChHHHHHHHhH
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .+.+.|.|..|.+.|.+...+..|...
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHTS
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHCC
Confidence            456677888888888888888888743

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}

Probab=81.10  E-value=1.8  Score=41.82  Aligned_cols=40  Identities=13%  Similarity=0.135  Sum_probs=31.2

Q ss_pred             HhhccCCCHHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccc
Q 024455          193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSL  243 (267)
Q Consensus       193 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l  243 (267)
                      ..+...++..+++..+.+++..      .+|     .||+|||+ .|||.+|
T Consensus       305 ~~V~~~~sE~eLL~~F~~~i~~------~DP-----DIIvGyNi~~FDlpyL  345 (919)
T 3iay_A          305 SMIFSHATEEEMLSNWRNFIIK------VDP-----DVIIGYNTTNFDIPYL  345 (919)
T ss_dssp             BEEEEESSHHHHHHHHHHHHHH------HCC-----SEEEESSTTTTHHHHH
T ss_pred             CeEEECCCHHHHHHHHHHHHHH------hCC-----CEEEecCCccCCHHHH
Confidence            3455667899999999999942      222     39999999 6899999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1wlja_	173	c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr	4e-08
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.003
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.004

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VAMDCEMVG          AR  LV+    V++  +++P+  +T+YR  V+G+T + +  
Sbjct: 3   VAMDCEMVGL-GPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 61

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A P    + +IL++L                   VGH L+HD  +L+ +   + + DT+ 
Sbjct: 62  ATPFAVARLEILQLLKGKLV--------------VGHDLKHDFQALKEDMSGYTIYDTST 107

Query: 258 YRPLMKTNL 266
            R L +   
Sbjct: 108 DRLLWREAK 116

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.2 bits (74), Expect = 0.003
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI 36
            C  C + F R++HL  H + 
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRS 24

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (73), Expect = 0.004
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI 36
          + CV C K F R   L++H ++
Sbjct: 8  YGCVECGKAFSRSSILVQHQRV 29

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.8 bits (73), Expect = 0.004
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI 36
           +C  C + F R DHL  H++ 
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRT 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1wlja_	173	Interferon-stimulated gene 20 kDa protein, ISG20 {	99.8
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.54
d2guia1	174	N-terminal exonuclease domain of the epsilon subun	99.45
d3b6oa1	226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	99.28
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1y97a1	228	Three prime repair exonuclease 2, TREX2 {Human (Ho	99.17
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.14
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.1
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.09
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.05
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.97
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.91
d1w0ha_	200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	98.88
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.83
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.8
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.73
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.73
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d2qxfa1	467	Exonuclease I {Escherichia coli K12 (Escherichia c	98.63
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.6
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.54
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.54
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.54
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.51
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.49
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.49
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.46
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.46
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.44
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.41
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.32
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.19
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.17
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.14
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.06
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2f96a1	202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	98.03
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.95
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.79
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.67
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.61
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.6
d2igia1	180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	97.55
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.55
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.54
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.54
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.5
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.49
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.42
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.24
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.13
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.06
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.02
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.97
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.97
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.79
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.71
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.68
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.51
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.51
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.41
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.4
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.37
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.12
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.08
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.01
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.79
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.58
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1x9ma1	204	Exonuclease domain of T7 DNA polymerase {Bacteriop	95.46
d1kfsa1	195	Exonuclease domain of prokaryotic DNA polymerase {	95.36
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.3
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.18
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.17
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.14
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.84
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.57
d1yt3a3	193	Ribonuclease D, catalytic domain {Escherichia coli	94.19
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.87
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.77
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.55
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.48
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.28
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.27
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.7
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.38
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.36
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.31
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.98
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.84
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.74
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.74
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.68
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	91.49
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	91.37
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.05
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.75
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.62
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	90.37
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	90.2
d1tgoa1	347	Exonuclease domain of family B DNA polymerases {Ar	90.08
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	89.78
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.2
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.17
d2hbka2	292	Exosome complex exonuclease RRP6 {Baker's yeast (S	87.75
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	87.32
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.84
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.56
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.38
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	83.75
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.17

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-20  Score=145.76  Aligned_cols=107  Identities=36%  Similarity=0.648  Sum_probs=95.3

Q ss_pred             ceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      +++++||||+|.+.... ..+..+.+++.+|..+++++++|..+++++++.+||||++++++++++++++++|.+++   
T Consensus         1 ~~v~iD~EttGl~~~~~-~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~---   76 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL---   76 (173)
T ss_dssp             CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH---
T ss_pred             CEEEEEEEcCCCCCCCC-cEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhc---
Confidence            36899999999975433 33466788899999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCcccccCCCceEEEeccchhhhccccccCCCCceecccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK  257 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~~~~~~~dt~~  257 (267)
                                 .+.+|||||+.||++||+..+++..++|...
T Consensus        77 -----------~~~~lv~hn~~fD~~~L~~~~~~~~~~~~~~  107 (173)
T d1wlja_          77 -----------KGKLVVGHDLKHDFQALKEDMSGYTIYDTST  107 (173)
T ss_dssp             -----------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGG
T ss_pred             -----------ccceEEeechHhHHHHHHHhhccCcccchhH
Confidence                       7789999999999999999999887777653

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=93.91  Aligned_cols=49  Identities=33%  Similarity=0.511  Sum_probs=46.6

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      ||||+|+ ||+.|.++..|..|+++  |++++| .|++||+.|.+.++|..|+
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~--Ht~ekpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhc--cccccCCcCCCcCCEecCHHHHHHHH
Confidence            7999995 99999999999999999  999999 9999999999999999997

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=5.9e-14  Score=107.63  Aligned_cols=95  Identities=21%  Similarity=0.346  Sum_probs=83.6

Q ss_pred             eeeeeccccCCcC------CCCccceeeEEEecCC-CCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHH
Q 024455          137 AVAMDCEMVGGGS------NGTLDLCARVCLVDED-ENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (267)
Q Consensus       137 ~~~~dcE~~g~~~------~~~~~~i~~v~vvd~~-~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~  209 (267)
                      ++++|+||+|.+.      .++++++|.|.+.++. ....++.+|+|..+++...+++|||+++++.+++++.++..+|.
T Consensus         2 ~vv~D~ETTGl~~~~~~~~~d~IIeIg~v~~~~~~~~~~~~~~~v~P~~~i~~~~~~i~gIt~e~~~~~~~~~~~~~~~~   81 (174)
T d2guia1           2 QIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFM   81 (174)
T ss_dssp             EEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHHHHHH
T ss_pred             EEEEEeeCCCCCcccccCCCCEEEEEEEEEEECCEEeeeEEEEEeccCccchhhhhhccccchhhhhcchhHHHHHHHHH
Confidence            5899999999864      2468899998877553 33569999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      +++              ++..+||||..+|+.++..
T Consensus        82 ~~~--------------~~~~~v~~~~~~d~~~~~~  103 (174)
T d2guia1          82 DYI--------------RGAELVIHNAAFDIGFMDY  103 (174)
T ss_dssp             HHH--------------TTSEEEETTHHHHHHHHHH
T ss_pred             Hhc--------------CCCeEEEeecchhhHHHHH
Confidence            999              7789999999999999863

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.4e-12  Score=104.45  Aligned_cols=112  Identities=15%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             ceeeeeccccCCcC-CCCccceeeEEEecC-------------------CCCeeEecccCCCCCccccccccccCCHHhh
Q 024455          136 KAVAMDCEMVGGGS-NGTLDLCARVCLVDE-------------------DENVIFHTYVQPQLPVTNYRYEVTGLTEEDI  195 (267)
Q Consensus       136 ~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~-------------------~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l  195 (267)
                      .++++|+||+|... ..++++++.+.+.+.                   .....++.+|+|..+|+++.+++||||.+++
T Consensus         5 ~~v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~~~~i~GIt~~~l   84 (226)
T d3b6oa1           5 TLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAEL   84 (226)
T ss_dssp             EEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHH
T ss_pred             eEEEEEEECCCCCCCCCceEEEEEEEEeCCcccccccccccccccccccceeceeeeeECCCCCCCHHHHHhcCCCHHHH
Confidence            47899999999864 467888888877532                   1344688999999999999999999999999


Q ss_pred             ccCC--C-HHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhccccc-------cCC--CCceecccc
Q 024455          196 KNAM--P-LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM-------NYP--DHMLRDTAK  257 (267)
Q Consensus       196 ~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~~-------~~~--~~~~~dt~~  257 (267)
                      .+++  + .+.+.+.+..|+..          .+++.+|||||+ .||+.||+.       ..|  ....+||..
T Consensus        85 ~~~~~~~~~~~~~~~~~~f~~~----------~~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~  149 (226)
T d3b6oa1          85 EVQGRQRFDDNLAILLRAFLQR----------QPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA  149 (226)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHT----------SCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHh----------ccCCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHH
Confidence            8763  2 34455555555521          115578999995 899999963       222  345578753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-12  Score=71.33  Aligned_cols=37  Identities=41%  Similarity=0.756  Sum_probs=33.7

Q ss_pred             CCCCccccccCccccCChHHHHHHHh-HhcCCCCCC-Cccc
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV   48 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~H~~~~~-~C~~   48 (267)
                      +-+|||+|+.||+.|.++++|..|++ +  |++++| .|++
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~--Ht~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCc--cCCCcCcCCcC
Confidence            36899999999999999999999986 7  999999 9974

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-11  Score=98.13  Aligned_cols=116  Identities=21%  Similarity=0.216  Sum_probs=83.9

Q ss_pred             cCCCceeeeeccccCCcC-CCCccceeeEEEecC----------------CCCeeEecccCCCCCccccccccccCCHHh
Q 024455          132 CRGPKAVAMDCEMVGGGS-NGTLDLCARVCLVDE----------------DENVIFHTYVQPQLPVTNYRYEVTGLTEED  194 (267)
Q Consensus       132 ~~~~~~~~~dcE~~g~~~-~~~~~~i~~v~vvd~----------------~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~  194 (267)
                      .....++++|+|++|.+. .+++.+++.+.+.+.                .....++.+|+|..+|++..+++||||+++
T Consensus         5 ~~~~~~v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~~i~~~~~~itGIt~~~   84 (228)
T d1y97a1           5 PRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   84 (228)
T ss_dssp             CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             CCCCEEEEEEEecCCcCCCCCCeEEEEEEEEECCccccccccccccccccceecceeeEECCCCCCCHHHHHhcCCCHHH
Confidence            344568999999999874 567888888887533                234568999999999999999999999999


Q ss_pred             hccCC--CHHHHHHHHHHHHhcCCCCCcccccCCCceEEEecc-chhhhccccc-------cCC-CCceeccc
Q 024455          195 IKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRM-------NYP-DHMLRDTA  256 (267)
Q Consensus       195 l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~Dl~~l~~-------~~~-~~~~~dt~  256 (267)
                      |++++  ++.++..+++..+.+...         ++.++|||| +.||+.||+-       ..| ....+||-
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl  148 (228)
T d1y97a1          85 LARCRKAGFDGAVVRTLQAFLSRQA---------GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTL  148 (228)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTSC---------SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHH
T ss_pred             HHhccCcchHHHHHHHHHHHhhhcc---------CCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHH
Confidence            98874  444444444443323222         568999999 5899999963       233 44667885

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.7e-12  Score=67.63  Aligned_cols=31  Identities=29%  Similarity=0.595  Sum_probs=29.7

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +|||||+|..||++|.++++|..|+++  |+++
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~--HtgE   33 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRV--HTGE   33 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHG--GGCS
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccc--cCCC
Confidence            799999999999999999999999999  9985

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8e-12  Score=76.23  Aligned_cols=44  Identities=16%  Similarity=0.112  Sum_probs=35.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCCcc---ccccCcchhhhhhhccc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAPVP---FEKTLSNAESQKKISGA  125 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~~~---C~~~f~~~~~l~~H~~~  125 (267)
                      |+ ||+.|...++|..|+++|++++||.   |+++|...+.|..|++.
T Consensus         6 C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           6 CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            63 7788888888888888888888886   88888888888888753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.7e-11  Score=66.91  Aligned_cols=31  Identities=23%  Similarity=0.491  Sum_probs=29.6

Q ss_pred             CCCCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +|||||+|++|++.|.++++|..|+++  |++.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~--Ht~~   33 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKV--HTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG--GTSC
T ss_pred             CCCccccCCCCCCcccChHHHHHHccc--cCCc
Confidence            799999999999999999999999999  9875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=9.9e-12  Score=64.23  Aligned_cols=28  Identities=32%  Similarity=0.764  Sum_probs=26.8

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      ||||+|++|++.|.++++|..|+++  |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~--HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT--HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC--ccC
Confidence            7999999999999999999999999  876

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.09  E-value=2.6e-11  Score=63.39  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=27.7

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      |||.|++|++.|.++++|.+|+++  |+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~--HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc--ccCCC
Confidence            699999999999999999999999  99975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-11  Score=67.70  Aligned_cols=32  Identities=31%  Similarity=0.562  Sum_probs=30.3

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      .+++|||+|+.|||+|.+.++|..|+++  |+|+
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r~--HtGE   38 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRRT--HTGE   38 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCS
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCcc--CCCC
Confidence            5799999999999999999999999999  9985

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.2e-11  Score=65.48  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      -+|||||+|++|+++|.++++|..|+++  |+++.
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~--H~~~~   35 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPN   35 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHH--TTCSS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcc--cCCCC
Confidence            3799999999999999999999999999  87653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.1e-11  Score=62.50  Aligned_cols=29  Identities=38%  Similarity=0.762  Sum_probs=27.6

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      |||.|+.|++.|.++++|..|+++  |++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~--HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT--HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG--GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc--cCCcC
Confidence            799999999999999999999999  99875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.8e-11  Score=59.43  Aligned_cols=26  Identities=38%  Similarity=0.770  Sum_probs=24.7

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |||+|++|||+|.++++|..|+++  |+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri--HT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI--HT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--HH
T ss_pred             CCccCCCCcCeeccCcccccCccC--CC
Confidence            799999999999999999999999  74

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-10  Score=64.67  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=27.3

Q ss_pred             ccccccccCChhhHHHHHH-HhcCCCCcccc
Q 024455           81 CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFE  110 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~-~h~~~~~~~C~  110 (267)
                      |++||+.|...++|..|++ +|++++||+|.
T Consensus         8 C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            7788999999999999986 79999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.7e-10  Score=62.73  Aligned_cols=32  Identities=16%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      -+|||||+|+.|++.|.++++|+.|++.+ |++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~-H~~   34 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQK-HTE   34 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHH-SSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccc-cCC
Confidence            47999999999999999999999998663 664

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.9e-10  Score=63.17  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=28.4

Q ss_pred             CCCCCccccccCccccCChHHHHHHHhHhcCCC
Q 024455            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      -+|||||+|+.|+++|.++++|..|+++  |..
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~--H~~   36 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhc--CcC
Confidence            4799999999999999999999999999  864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.6e-10  Score=62.61  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             cccccccCChhhHHHHHHHhcCCCCcccc
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~~~~~C~  110 (267)
                      +.||+.|.++++|++|+++|++++||+|+
T Consensus         7 ~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           7 PACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45999999999999999999999999996

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-09  Score=83.26  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             ceeeeeccccCC----c-CCCCccceeeEEEecCCCC--eeEecccCCC--CCccccccccccCCHHhhccCCCHHHHHH
Q 024455          136 KAVAMDCEMVGG----G-SNGTLDLCARVCLVDEDEN--VIFHTYVQPQ--LPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (267)
Q Consensus       136 ~~~~~dcE~~g~----~-~~~~~~~i~~v~vvd~~~~--~~~~~~v~P~--~~i~~~~~~~~GIt~~~l~~~~~~~~v~~  206 (267)
                      .++++|+|+++.    . ...+++++|.|.+-...+.  ..++.+|+|.  .++++..+.+||||+++|.+++++++|++
T Consensus         7 ~~iv~D~EtT~~~~~~~~~~~~Iieigav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~~~~~~~~   86 (200)
T d1w0ha_           7 YICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLK   86 (200)
T ss_dssp             EEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHH
T ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEEEECCCCeEEEEEEEEEecCccccCCHHHHHHHCCCHHHhhhhhhhHhHHH
Confidence            368999999832    1 3345788888887544443  4589999995  57999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCceEEEeccchhh-hcccc
Q 024455          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHD-LDSLR  244 (267)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D-l~~l~  244 (267)
                      ++.+++.+.       ..+....+++++|..+| ..||+
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~L~  118 (200)
T d1w0ha_          87 KVIDWMKLK-------ELGTKYKYSLLTDGSWDMSKFLN  118 (200)
T ss_dssp             HHHHHHHHT-------TBTTTBCEEEEESSTTTTHHHHH
T ss_pred             HHHHHhcCC-------cEEeeeeeeeccchhhhHHHHHH
Confidence            999999531       11223345555555554 56774

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.83  E-value=6.4e-10  Score=57.96  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=23.3

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |++||+.|.++++|.+|+++|+|||
T Consensus         5 C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           5 CEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCchHcccccCcccCCC
Confidence            7788999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1e-09  Score=57.07  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=23.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |++||+.|.++++|.+|+++|++|+
T Consensus         5 C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           5 CPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCcCCCeecchHHhhhhcCccCCcC
Confidence            7788999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.6e-09  Score=56.66  Aligned_cols=28  Identities=32%  Similarity=0.691  Sum_probs=26.4

Q ss_pred             Ccccccc--CccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |||.|+.  |++.|.++++|++|+++  |+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS--HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc--CcCC
Confidence            7999988  99999999999999999  9985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.1e-09  Score=56.84  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .+.||+.|.+.++|..|+++|+|||
T Consensus         7 ~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           7 WSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             STTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCCcCcCChhHhhhhcCcccccC
Confidence            5679999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.1e-09  Score=56.14  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=26.8

Q ss_pred             Ccccc--ccCccccCChHHHHHHHhHhcCCCCC
Q 024455           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      |||.|  +.|++.|.+.++|.+|+++  |++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~--HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc--ccccC
Confidence            69999  5799999999999999999  99975

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.5e-09  Score=56.85  Aligned_cols=28  Identities=29%  Similarity=0.524  Sum_probs=26.1

Q ss_pred             Ccccccc--CccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |||.|+.  |++.|.++++|++|+++  |+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI--HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH--HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc--cCCC
Confidence            7999976  99999999999999999  9885

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.4e-09  Score=62.57  Aligned_cols=33  Identities=24%  Similarity=0.547  Sum_probs=30.4

Q ss_pred             CCCCCcccccc--CccccCChHHHHHHHhHhcCCCCC
Q 024455            9 KRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus         9 ~~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .+|||||.|+.  |++.|..+++|..|+++  |++++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~--Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhccc--ccCCC
Confidence            46999999976  99999999999999999  99875

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

Probab=98.63  E-value=1.6e-08  Score=88.79  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=69.7

Q ss_pred             ceeeeeccccCCcCC-CCccceeeEEEecCCCCe--eEec-ccCCC--CCccccccccccCCHHhhccC-CCHHHHHHHH
Q 024455          136 KAVAMDCEMVGGGSN-GTLDLCARVCLVDEDENV--IFHT-YVQPQ--LPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKI  208 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~-~~~~~i~~v~vvd~~~~~--~~~~-~v~P~--~~i~~~~~~~~GIt~~~l~~~-~~~~~v~~~~  208 (267)
                      .++.+|.||+|.+.. ++++++|+|.+ |.++.+  .++. .++|.  ....+....+||||++++.++ .+..++.+.+
T Consensus         3 ~fv~~D~ETtG~~~~~d~ii~~~ai~~-d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~i   81 (467)
T d2qxfa1           3 TFLFHDYETFGTHPALDRPAQFAAIRT-DSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI   81 (467)
T ss_dssp             EEEEEEEEESSSCTTTSCEEEEEEEEE-CTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred             eEEEEEEECCCcCCCCCcEEEEEEEEE-CCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHHHH
Confidence            478999999999744 67888888754 444433  3343 34443  323346788999999999876 5889999999


Q ss_pred             HHHHhcCCCCCcccccCCCceEEEe-ccchhhhccccc
Q 024455          209 LEILNNGESTGRLMLDDGKARLLVG-HGLEHDLDSLRM  245 (267)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvg-h~~~~Dl~~l~~  245 (267)
                      .+++..            .+.++|| ||+.||..||+-
T Consensus        82 ~~~~~~------------~~~~~v~~n~~~FD~~fl~~  107 (467)
T d2qxfa1          82 HSLFTV------------PKTCILGYNNVRFDDEVTRN  107 (467)
T ss_dssp             HHHHTS------------TTEEEEESSTTTTHHHHHHH
T ss_pred             HHHHhc------------CCCcEEEEecchhhHHHHHH
Confidence            999942            2345555 558999999964

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.3e-09  Score=56.69  Aligned_cols=32  Identities=44%  Similarity=0.747  Sum_probs=29.3

Q ss_pred             cccccc--CccccCChHHHHHHHhHhcCCCCCC-Ccc
Q 024455           14 RHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (267)
Q Consensus        14 ~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~~~-~C~   47 (267)
                      .|.|+.  |++.|.++++|++|+++  |++++| .|+
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~--Htgekpy~C~   35 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKL--HSDTRDYICE   35 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH--HHTSCCCSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCe--eCCCCCEeCC
Confidence            378865  99999999999999999  999999 986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=7.4e-09  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             ccccccccCChhhHHHHHHHhcC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |++|++.|.++++|..|+++|+|
T Consensus         6 C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           6 CRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCCCcCEecccccccccCCCccC
Confidence            67888999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.3e-08  Score=53.97  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=26.6

Q ss_pred             CCcccccc--CccccCChHHHHHHHhHhcCCCC
Q 024455           12 TARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        12 ~k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      ||||.|+.  |++.|.+.++|.+|+++  |+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~--Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh--ccCC
Confidence            68999977  99999999999999999  8864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.5e-08  Score=47.41  Aligned_cols=26  Identities=50%  Similarity=0.827  Sum_probs=24.4

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      |++|+.|+|.|+++..|+.||+.  |+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~--htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC--HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG--CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc--cCC
Confidence            68999999999999999999999  885

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.2e-08  Score=51.09  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |++|||+|..+++|..|+|+|+
T Consensus         5 C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           5 CLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcCeeccCcccccCccCCC
Confidence            7788999999999999999995

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=6.7e-09  Score=57.47  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=20.6

Q ss_pred             HHhHhcCCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        33 H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      |.|+  |++++| +|++||+.|.++++|.+|+
T Consensus         2 h~R~--HTgeKPy~C~~C~k~F~~~~~L~~H~   31 (37)
T d1p7aa_           2 STRG--STGIKPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             CSST--TCCSSSBCCTTTCCCBSSHHHHHHHH
T ss_pred             CCCc--cCCccCeEeCCCCCEecCHHHHHHHH
Confidence            4566  777777 7777777777777777665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.8e-09  Score=57.84  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=15.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |++|||+|...++|..|+++|+||
T Consensus        15 C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          15 CDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCCCCceeeCHHHHHHhCccCCCC
Confidence            344556666667777777777765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.3e-08  Score=52.63  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=25.0

Q ss_pred             Ccccccc--CccccCChHHHHHHHhHhcCCC
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      |||.|+.  |+|.|.+.++|++|+++  |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~--HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI--HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH--HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc--cCC
Confidence            7999966  99999999999999999  875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=7.6e-09  Score=60.34  Aligned_cols=38  Identities=11%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             HHHhhc----CCCCCCCcCCcccccccccccccccCChhhHHHHHHHhcCCC
Q 024455           58 SLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        58 ~l~~H~----~~~~~C~~C~k~f~~~~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|..|+    .+||.|.          .+.|++.|..+++|..|+++|+|++
T Consensus         6 ~l~~h~~h~gekpy~C~----------~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVKEMPDKTFECL----------FPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECC----------CTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhhccCCCCeECC----------cCCCCccccCchHHHhhcccccCCC
Confidence            455565    5677762          3458999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.3e-08  Score=53.46  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=18.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |.+||++|.+.++|..|+++|+||
T Consensus        10 C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1          10 CVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCCCEeCchHHhHhhccccCCC
Confidence            556677777788888888888775

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.7e-08  Score=55.32  Aligned_cols=25  Identities=24%  Similarity=0.611  Sum_probs=17.3

Q ss_pred             CCCCCC-CcccchhhcCCHHHHHhhc
Q 024455           39 HSVHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      |+|++| +|++||+.|.++++|++|+
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~   28 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHI   28 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHc
Confidence            777777 7777666666666666664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.8e-08  Score=51.27  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=20.1

Q ss_pred             cccccCChhhHHHHHHHhcCC
Q 024455           84 CMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        84 C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      ||+.|.++++|++|+|+|+||
T Consensus        10 Cgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3          10 CRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCceECChhHhhhhcCcCcCC
Confidence            999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.4e-08  Score=54.76  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=13.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |++||++|.++++|..|+++|+++
T Consensus        11 C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2          11 CSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCcCCHhHHHHhCcccCCC
Confidence            334455555555666666666543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.5e-08  Score=51.08  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=21.0

Q ss_pred             cccccccCChhhHHHHHHHhcCC
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      +.||++|.++++|.+|+|+|+||
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           8 EGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             TTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCCceECcHHHcCccccccCCC
Confidence            34999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.6e-08  Score=49.65  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=28.1

Q ss_pred             cccccccccccCChhhHHHHHHHhcCCCCcc
Q 024455           78 DRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (267)
Q Consensus        78 ~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~  108 (267)
                      +.+|+.|||.|.....|.+|...|++||||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            3469999999999999999999999999973

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.6e-08  Score=50.88  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             Ccccccc--CccccCChHHHHHHHhHhcCC
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |||.|+.  |+|.|.+.++|++|+++  |+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~--HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT--HA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH--HC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh--cc
Confidence            6999966  99999999999999999  75

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=7.8e-08  Score=52.04  Aligned_cols=24  Identities=17%  Similarity=0.587  Sum_probs=16.7

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |++|++.|.++++|.+|+++|+.+
T Consensus        10 C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_          10 CRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCCcccChHHHHHHccccCCc
Confidence            556666777777777777777654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1e-07  Score=49.17  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             ccccccCChhhHHHHHHHhcC
Q 024455           83 LCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      .||+.|.+.++|.+|+++|+|
T Consensus         9 gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           9 SCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             TCCCEESSHHHHHHHTHHHHT
T ss_pred             CCCcEECchhHhhhhcCccCC
Confidence            499999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=2.8e-07  Score=45.23  Aligned_cols=27  Identities=33%  Similarity=0.577  Sum_probs=25.2

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      ||||.|+.||+.|..+...++|.++  |.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki--H~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI--HL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG--GC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh--cc
Confidence            6899999999999999999999998  74

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.8e-07  Score=43.71  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             cccccccccCChhhHHHHHHHhcC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      +|+.|++.|+.+..|..|+|.|+|
T Consensus         3 kc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             ccchhhhHhcchhHHHHHhhccCC
Confidence            378889999999999999999975

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.9e-07  Score=45.02  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=27.0

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      ||||.|++|+..|..+..+.-|.++  |.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs--hdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH--HSCC
T ss_pred             CCCcccchHHHHhhccccceEeeec--ccCc
Confidence            6899999999999999999999999  8764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.8e-07  Score=46.42  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             cccccccCChhhHHHHHHHhc
Q 024455           82 NLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      +.|||+|.+.++|++|+|+|+
T Consensus         8 ~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           8 DGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             TTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCcCCCHHHHHHHHhhcc
Confidence            449999999999999999995

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=7.2e-07  Score=47.01  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             cccccccCChhhHHHHHHHhcCC
Q 024455           82 NLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      +.||+.|.+.++|.+|+++|+.+
T Consensus         9 pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           9 PGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             TTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCCeeCCHHHHHHHhhhccCC
Confidence            34999999999999999999764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.3e-07  Score=43.38  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |.+|||.|..++.|++|+.+|++|
T Consensus         5 c~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccCC
Confidence            888999999999999999999886

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.8e-06  Score=44.00  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=28.3

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~   44 (267)
                      .|...|+.|||.|....+|.+|..+  |++++|
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkls--hs~ekp   33 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLS--HSGEKP   33 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG--SCSCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcc--cCCCCC
Confidence            4567899999999999999999999  999987

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease T
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.03  E-value=3.6e-06  Score=64.36  Aligned_cols=99  Identities=22%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             eeeeccccCCc-CCCCccceeeEEEecC-CCCee------EecccCCCCCccccccccccCCHHhhccCC-C----HHHH
Q 024455          138 VAMDCEMVGGG-SNGTLDLCARVCLVDE-DENVI------FHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-P----LKEV  204 (267)
Q Consensus       138 ~~~dcE~~g~~-~~~~~~~i~~v~vvd~-~~~~~------~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~-~----~~~v  204 (267)
                      +++|+|++|.+ ..++++++|.|.+... .+...      +...+.|..++.+....++||+.+++..++ .    ++++
T Consensus        14 Vv~D~ETTGl~~~~~~IIeigav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~~   93 (202)
T d2f96a1          14 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI   93 (202)
T ss_dssp             EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCceEEEEEEEEEecccCceecceeEEEeeccCccccCCHHHHHhcCCcHHHHHhcccchhHHHHHH
Confidence            78999999987 4467889898887533 33222      223445667889999999999999987763 3    4455


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM  245 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~  245 (267)
                      ...+..++....         ....++++|+..+|..+++.
T Consensus        94 ~~~~~~~~~~~~---------~~~~~~~~~~~~~d~~~~~~  125 (202)
T d2f96a1          94 FRGIRKALKANG---------CKRAILVGHNSSFDLGFLNA  125 (202)
T ss_dssp             HHHHHHHHHHTT---------CSEEEEEETTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc---------ccccceeeeehhhhHHHHHH
Confidence            555555553211         15678999999999999864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.9e-06  Score=41.69  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=24.7

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      .+.|..|||.|...+.|++|+.+  |+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv--htge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV--HTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG--TSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc--ccCC
Confidence            57899999999999999999999  9875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=2.8e-06  Score=40.46  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             cccccccccCChhhHHHHHHHhcCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|+.|.+.|.++..|..|-|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            38999999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.2e-06  Score=39.80  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |+||+|..|...-...+.|..|.+.  |+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~--htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS--HTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT--CCSC
T ss_pred             CCcceeeecccccCCchheEEeeec--ccCc
Confidence            6899999999999999999999999  9874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.3e-05  Score=38.08  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=24.2

Q ss_pred             ccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           16 KCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      +|+.|.|+|.++..|+.|-+.  |+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~--htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK--HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH--HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc--ccCCC
Confidence            699999999999999999999  99874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.6e-05  Score=39.42  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             ccccccCChhhHHHHHHHhcC
Q 024455           83 LCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      .|+|++...++|++|++.++|
T Consensus         9 gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           9 GCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             TTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccCCHHHHHHHHHhhCC
Confidence            499999999999999998775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.1e-05  Score=38.32  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      |+.||..-...|-|+.|+|.|++++
T Consensus         4 C~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           4 CEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccCcccCCHHHHHHHHHHhcCCC
Confidence            7888888899999999999999874

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.1e-05  Score=58.72  Aligned_cols=117  Identities=15%  Similarity=0.039  Sum_probs=73.2

Q ss_pred             CceeeeeccccCCc-CCCCccceeeEEEecCCCCe--eEecccCCC-------CCccccccccccCCHHhhccCCCHHHH
Q 024455          135 PKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQ-------LPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (267)
Q Consensus       135 ~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~~~~~--~~~~~v~P~-------~~i~~~~~~~~GIt~~~l~~~~~~~~v  204 (267)
                      .+++.+|+||+|.+ ..++++++|.|.+..+....  .....+.|.       ..+........+.........+.++.+
T Consensus         5 ~~lv~lD~ETTGLdp~~d~IIeIaaV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T d2igia1           5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREA   84 (180)
T ss_dssp             GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHH
T ss_pred             CCEEEEEEECCCCCCCCCeEEEEEEEEEECCceEeeccceeeeeccccccccccccccccccccchhhhhccccccHHHH
Confidence            45789999999997 55678888877665432211  122233332       222223344566666666777888888


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCceEEEeccchhhhccccccC------CCCceecccccc
Q 024455          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY------PDHMLRDTAKYR  259 (267)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~~------~~~~~~dt~~~~  259 (267)
                      ...+..+....        ...+..+++|||+.||+.||....      .....+|+..+.
T Consensus        85 ~~~~~~~~~~~--------~~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~  137 (180)
T d2igia1          85 ELATLEFLKQW--------VPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLK  137 (180)
T ss_dssp             HHHHHHHHTTT--------SCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHH
T ss_pred             HHHHHHHHhhh--------ccCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhH
Confidence            88888877320        011346899999999999997422      234567776433

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.9e-05  Score=38.48  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             Ccccccc--CccccCChHHHHHHHhH
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~   36 (267)
                      |||.|..  |+|.|...++|+.|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            6899955  99999999999999998

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.3e-05  Score=37.10  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=25.1

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      |||+|..|...-...++|+.|+|+  |+.
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri--hs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI--HSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH--SCC
T ss_pred             CCcccccccchhcchhhHhhhhhc--ccC
Confidence            799999999999999999999999  863

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4.4e-05  Score=37.18  Aligned_cols=28  Identities=21%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .|.|+.||......+.|+.|.++  |++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs--HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT--HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH--hcCCC
Confidence            48999999999999999999999  99864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.50  E-value=3.9e-05  Score=35.81  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=22.4

Q ss_pred             cccccCccccCChHHHHHHHhHhcCC
Q 024455           15 HKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |+|..|.++|..++.|.+|++.  |.
T Consensus         1 ykcglcersfveksalsrhqrv--hk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV--HK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG--TC
T ss_pred             CcccchHHHHHHHHHHHHHHHh--hc
Confidence            7899999999999999999998  74

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.1e-05  Score=41.60  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.1

Q ss_pred             CCCCccccccCccccCChHHHHHHHhH
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +|-|||.|..|+|.|-+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578999999999999999999999743

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=4.8e-05  Score=36.99  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.7

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |..|.|+.|...|..+..|..||-+  |+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs--htge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS--HTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH--HSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec--ccCC
Confidence            5689999999999999999999999  9874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.24  E-value=0.00012  Score=39.07  Aligned_cols=30  Identities=23%  Similarity=0.523  Sum_probs=26.7

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCC
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~   43 (267)
                      .+.|+|..|++.|.+...|--||+.  |..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~--Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNV--HRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT--TCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhh--hcchH
Confidence            4689999999999999999999999  86554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00018  Score=35.18  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             CccccccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |||.|..|...-...++|+.|.++- |+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk-hske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK-HSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH-TSSC
T ss_pred             CCccccccccccccchhhhhhhhcc-cccC
Confidence            6999999999999999999999884 6654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=8.5e-05  Score=36.24  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.0

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |++||+.|..+....+|.++|.
T Consensus         6 C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           6 CDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CTTTCCEESSHHHHHHHHGGGC
T ss_pred             cchhhhhhhcchhhhhhhhhcc
Confidence            7788889999999999998884

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00011  Score=34.19  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=21.1

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ||+|+.|...|.++..|+.||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999853

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.13  E-value=0.00011  Score=35.59  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             Ccccc--ccCccccCChHHHHHHHhH
Q 024455           13 ARHKC--VACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~   36 (267)
                      .||+|  +.|++.|...+.|++|.++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            58999  5699999999999999988

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0002  Score=34.79  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.6

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ||.|..|...|.++.+|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78999999999999999999987

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=8.7e-05  Score=37.08  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             Ccccccc--CccccCChHHHHHHH-hHhcCCCC
Q 024455           13 ARHKCVA--CYKQFKRKDHLIEHM-KISYHSVH   42 (267)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~-~~~~H~~~   42 (267)
                      |||.|+.  |.|.|+..+.-..|+ |+  |+.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT--Hs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT--HSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT--TCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc--ccCC
Confidence            6999955  999999999999998 77  8753

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.97  E-value=0.00016  Score=33.64  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.9

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |..|.++|..++.|.+|+|+|.
T Consensus         3 cglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           3 CGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999984

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.97  E-value=0.00012  Score=35.71  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=25.0

Q ss_pred             Ccccc--ccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |||.|  +.|.|.|.+--+|.+|..+  |+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t--htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT--HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH--HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc--ccCC
Confidence            58889  6799999999999999999  8874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00036  Score=33.81  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |..|...|...-.|+.||-.|+|+
T Consensus         7 cs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           7 CSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eHHHHHHHHHHHhheeeeecccCC
Confidence            888999999999999999999885

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.71  E-value=0.00049  Score=34.30  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=23.2

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~~   41 (267)
                      ||.|..|++.|..+..|.+|++.- |.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl-H~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI-HSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT-SCC
T ss_pred             CcccccccchhhHHHHHHHHHHHH-hcC
Confidence            799999999999999999997652 765

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.68  E-value=0.00039  Score=33.79  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=21.0

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      -+-|.|.|.+.-.|.+|..+|+||
T Consensus         7 ~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           7 EEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             cccccccchhhhhhhhhhccccCC
Confidence            456889999999999999999886

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0007  Score=35.74  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=24.2

Q ss_pred             CCCcccc--ccCccccCChHHHHHHHhH
Q 024455           11 STARHKC--VACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        11 ~~k~~~C--~~C~k~f~~~~~l~~H~~~   36 (267)
                      .+|||.|  +.|+..|.+..+|..|...
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhh
Confidence            5899999  8899999999999999987

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.51  E-value=0.00055  Score=33.11  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             cccccccCChhhHHHHHHHh
Q 024455           82 NLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h  101 (267)
                      +-|++.|+..+.|++|.++|
T Consensus         9 egcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           9 EGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCccccccCHHHHhhhhhcc
Confidence            45889999999999999987

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.41  E-value=0.00076  Score=35.85  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             cccccccccCChhhHHHHHHHhcCCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~~  105 (267)
                      .|..|++.|.+...|=.||+.|..++
T Consensus         7 ~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           7 TCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCccCCcccccchHhhhcchH
Confidence            38899999999999999999997654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0011  Score=31.54  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=19.5

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ||+|..|||.|..+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68899999999999999888754

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=32.28  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             CccccccCccccCChHHHHHHHhH
Q 024455           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      +||+|+.|..-..+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999999999999999999876

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0015  Score=32.18  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             cccccccccCChhhHHHHHHHhcCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      +|++|+..|..+..+.-|.|.|.|.
T Consensus         5 ~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           5 SCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             EETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             ccchHHHHhhccccceEeeecccCc
Confidence            3788899999999999999999765

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.12  E-value=0.0018  Score=30.15  Aligned_cols=23  Identities=43%  Similarity=0.898  Sum_probs=21.1

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .|.|+.|-+.|.++.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            38999999999999999999876

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.00081  Score=33.48  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             ccccccccCChhhHHHHH-HHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHK-EACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~-~~h~~~  104 (267)
                      -+.|.|.|++.+.-..|+ |+|..|
T Consensus         7 ~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           7 HEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             STTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCChhhhhcchhhhhhhccccccCC
Confidence            345899999999999997 888653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0013  Score=31.67  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=19.4

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |..|...-..++.|..|+|.|+|.
T Consensus         6 cqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           6 CQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             eeecccccCCchheEEeeecccCc
Confidence            556666677899999999999874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.002  Score=33.18  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             cccccccccCChhhHHHHHHHhcCC
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      .|+-=++.|.....|..|+|+|+||
T Consensus         9 ~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           9 GCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCCcchhHHHHHHHHhhcCCC
Confidence            3666778899999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0023  Score=34.15  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=14.2

Q ss_pred             CCCC-CcccchhhcCCHHHHHhhc
Q 024455           41 VHQP-KCAVCQKLSKSFESLREHL   63 (267)
Q Consensus        41 ~~~~-~C~~C~~~f~~~~~l~~H~   63 (267)
                      |-+| .|..|+|.|-+..++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            4455 6666666666666666664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0034  Score=34.77  Aligned_cols=22  Identities=27%  Similarity=0.690  Sum_probs=20.0

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |..|||.|.....|++|...|-
T Consensus         9 CG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           9 CGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ccccccccCCHHHHhHhHHhcC
Confidence            8889999999999999998883

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of T7 DNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.46  E-value=0.0075  Score=45.38  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      ..+.++.+.+++.             ...+|||||. .||+.+|+
T Consensus        39 ~~~~l~~~~~~l~-------------~~D~ivghN~~~FD~P~L~   70 (204)
T d1x9ma1          39 FGAYLDALEAEVA-------------RGGLIVFHNGHKYDVPALT   70 (204)
T ss_dssp             HHHHHHHHHHHHH-------------TTCCEEESSTTTTHHHHHH
T ss_pred             chhHHHHHHHHHh-------------cCCEEEEEccccccHHHHH
Confidence            4567788888885             3358999995 79999996

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.017  Score=42.76  Aligned_cols=93  Identities=16%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             ceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHhcC
Q 024455          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (267)
Q Consensus       136 ~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~~~  215 (267)
                      +.+++|+|++|.......  +..+.+....+...+..+.....               ......+.+++.+.+..++.+ 
T Consensus        27 ~~~a~DtEt~~l~~~~~~--i~~i~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~l~~~le~-   88 (195)
T d1kfsa1          27 PVFAFDTETDSLDNISAN--LVGLSFAIEPGVAAYIPVAHDYL---------------DAPDQISRERALELLKPLLED-   88 (195)
T ss_dssp             SSEEEEEEESCSCTTTCC--EEEEEEEEETTEEEEEECCCCST---------------TCCCCCCHHHHHHHHHHHHTC-
T ss_pred             CeEEEEeeeCCCCccccc--cccceeeccCCcccccccccccc---------------cccccccHHHHHHHHHHHHhc-
Confidence            358999999997643332  23344433333323322211110               111224567888999999954 


Q ss_pred             CCCCcccccCCCceEEEeccchhhhcccccc--CCCCceecccc
Q 024455          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAK  257 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~--~~~~~~~dt~~  257 (267)
                                 .....||||+.+|+.+|...  .....+.||..
T Consensus        89 -----------~~i~ki~hn~~~d~~~l~~~~~~~~~~~~Dt~~  121 (195)
T d1kfsa1          89 -----------EKALKVGQNLKYDRGILANYGIELRGIAFDTML  121 (195)
T ss_dssp             -----------TTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHH
T ss_pred             -----------ccceeeechHHHHHHHHHHHhccccCccHHHHH
Confidence                       44577999999999999753  23446667754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0043  Score=29.96  Aligned_cols=20  Identities=30%  Similarity=0.660  Sum_probs=16.5

Q ss_pred             ccccccccCChhhHHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKEA  100 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~  100 (267)
                      |..|+-.|..+.+|..||+.
T Consensus         4 C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           4 CTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHS
T ss_pred             cceeeeeEeeccchhHhhhh
Confidence            77788888888899988864

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0059  Score=29.05  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=18.8

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |..|...-...+.|..|+|+|.
T Consensus         6 ck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           6 CKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSSSCCEESSHHHHHHHHHHSC
T ss_pred             cccccchhcchhhHhhhhhccc
Confidence            6677778888999999999985

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0048  Score=31.34  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .|.|+.|+|+|.++..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            58999999999999999999766

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0081  Score=28.64  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             ccccccCccccCChHHHHHHHhHhcCC
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |-+|+.|..+.+++..|+.|.|+  |-
T Consensus         2 pekc~ecsyscsskaalrvh~ri--hc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI--HC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG--GC
T ss_pred             CccCcccccccCcHHHHHHhhcc--cc
Confidence            55899999999999999999998  64

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0064  Score=29.00  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.0

Q ss_pred             cccccccccCChhhHHHHHHHhc
Q 024455           80 GCNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      +|+.|..+-+++..|+.|.|+|-
T Consensus         4 kc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGC
T ss_pred             cCcccccccCcHHHHHHhhcccc
Confidence            47778888888999999998884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.015  Score=27.59  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .|.|+.|+....+++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            58899999999999999999876

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease D, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.099  Score=38.83  Aligned_cols=85  Identities=18%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             CCceeeeeccccCCcCCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHHHh
Q 024455          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (267)
Q Consensus       134 ~~~~~~~dcE~~g~~~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~~~  213 (267)
                      ..+++++|+|+.+......  .++-+.+..++..-+++.+-..             .        +      ..+.+++.
T Consensus        21 ~~~~i~~DtE~~~~~~~~~--~l~liQi~~~~~~~~id~~~~~-------------~--------~------~~l~~ll~   71 (193)
T d1yt3a3          21 AFPAIALDTEFVRTRTYYP--QLGLIQLFDGEHLALIDPLGIT-------------D--------W------SPLKAILR   71 (193)
T ss_dssp             TSSEEEEEEEEECCSCSSC--EEEEEEEECSSCEEEECGGGCS-------------C--------C------HHHHHHHH
T ss_pred             cCCeEEEECcccCCCcCCC--cEEEEEEecCCcceeehhcchh-------------h--------h------HHHHHHhc
Confidence            3457999999998754332  2344555554443333322100             0        0      11245665


Q ss_pred             cCCCCCcccccCCCceEEEeccchhhhcccccc--CCCCceecccccc
Q 024455          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYR  259 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~Dl~~l~~~--~~~~~~~dt~~~~  259 (267)
                      +            ...+-||||+.+|+.+|.-.  ..-..++||....
T Consensus        72 ~------------~~i~Kv~hn~~~D~~~L~~~~g~~~~~~~Dt~~~~  107 (193)
T d1yt3a3          72 D------------PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILA  107 (193)
T ss_dssp             C------------TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHH
T ss_pred             C------------CCceEEEecchhhhhhhhhhcCccccccchhhHHH
Confidence            4            45677999999999998532  2234788987544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.87  E-value=0.0089  Score=27.59  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=9.4

Q ss_pred             ccccccccCChhhHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~   99 (267)
                      |..|...|-++..|+.||.
T Consensus         5 csscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           5 CSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSSSCCEESSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            3444445555555555543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.77  E-value=0.014  Score=28.86  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=17.7

Q ss_pred             ccccccccCChhhHHHHHHHhc
Q 024455           81 CNLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      |.+|++.|+.+.-|.+|+..-|
T Consensus         4 C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           4 CGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             CTTTCCEESSHHHHHHHHTTTS
T ss_pred             cccccchhhHHHHHHHHHHHHh
Confidence            7788899999999999975433

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.015  Score=27.54  Aligned_cols=19  Identities=21%  Similarity=0.567  Sum_probs=11.5

Q ss_pred             ccccccccCChhhHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~   99 (267)
                      |..|||.+..+.+|..|..
T Consensus         4 c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           4 CPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHH
T ss_pred             cccchhhhhhHhHHHHHHH
Confidence            4556666666666666653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.022  Score=28.82  Aligned_cols=24  Identities=21%  Similarity=0.668  Sum_probs=19.5

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |..|||.|..+..+.+|....+|.
T Consensus         7 cskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           7 CSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ecccccchhcchHHHHHhhhcCCC
Confidence            778889999998888888776653

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.015  Score=29.74  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             ccCccccCChHHHHHHHhHhcCCCC
Q 024455           18 VACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        18 ~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      +.=++.|..+..|..|+|+  |+++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~--HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRR--HTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHH--HHCC
T ss_pred             CCCCCcchhHHHHHHHHhh--cCCC
Confidence            3345679999999999999  9975

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.029  Score=30.87  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCccccccCccccCChHHHHHHHhH
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .-.|.|..|+|.|.....|+.|..-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             cceeeccccccccCCHHHHhHhHHh
Confidence            3468999999999999999999876

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.70  E-value=0.021  Score=26.88  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=20.2

Q ss_pred             ccc--ccCccccCChHHHHHHHhHhcCC
Q 024455           15 HKC--VACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        15 ~~C--~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |.|  +.|+|.|.....|+.|+-+  |+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~--ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS--HT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH--HH
T ss_pred             eEEEecCchHHHhhccceEEEeec--cc
Confidence            566  6799999999999999987  64

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.03  Score=26.69  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             ccccccCChhhHHHHHHHh
Q 024455           83 LCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        83 ~C~~~F~~~~~L~~H~~~h  101 (267)
                      -|+|.|...+.++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4889999999999999777

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.034  Score=29.07  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=17.9

Q ss_pred             cccccccCChhhHHHHHHHhc
Q 024455           82 NLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      +-|+.+|.+...|..|...|.
T Consensus        12 pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_          12 PGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTTCCEESSHHHHHHHHHHHH
T ss_pred             CCccccccchHHHHHhhhhhe
Confidence            458889999999999998885

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.31  E-value=0.04  Score=26.95  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=21.6

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      -+.|+..|.....|+.|+-.|+||
T Consensus         8 f~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           8 FADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             SGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCcchhhccchhhhHHhhhhcCC
Confidence            567999999999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.98  E-value=0.042  Score=25.81  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.0

Q ss_pred             cccccccCChhhHHHHHHHhc
Q 024455           82 NLCMNIFDSPSSLIKHKEACS  102 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~h~  102 (267)
                      +.|++.|..-..|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            468999999999999998885

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.036  Score=33.62  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=23.8

Q ss_pred             CCCCccccccCccccCChHHHHHHHhH
Q 024455           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .|.--|-|..|+|.|.+...|..|+++
T Consensus        11 pG~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          11 PGGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCEEecccccCccCCHHHHHHHHcc
Confidence            366779999999999999999999875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.74  E-value=0.063  Score=26.80  Aligned_cols=25  Identities=28%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             CCccccccCccccCChHHHHHHHhH
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      ...|-|.-||-.|++.+.|..|+.-
T Consensus         6 parf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ccceeccccceeecChhHHHhhhhe
Confidence            3457788888888888888877643

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.048  Score=26.25  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~  104 (267)
                      |+.|.-...+.++|..|++.-|+.
T Consensus         5 C~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           5 CNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             cceecccccCcchHHHHHHHHccC
Confidence            667777778899999999876653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.68  E-value=0.033  Score=28.22  Aligned_cols=29  Identities=17%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCC
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      |+-.|.|..|.+++...+++-+|..+. |.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS-Hk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS-HK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH-SS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh-cc
Confidence            567899999999999999999998663 54

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.49  E-value=0.027  Score=29.65  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=18.6

Q ss_pred             CCCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccchh
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (267)
                      .++.|.|..||..               |.++.| +|+.||.
T Consensus         2 ~~~~~vC~vCGyi---------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYI---------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCE---------------EESSCCSBCTTTCC
T ss_pred             CCCEEECCCCCCE---------------eeCCCCCcCCCCCC
Confidence            3567888888863               556666 8888874

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.06  Score=25.45  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=17.7

Q ss_pred             cccccccccCChhhHHHHHHHh
Q 024455           80 GCNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      .|+.|+-....++.|+.|++.-
T Consensus         4 qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           4 HCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHT
T ss_pred             cCCcchhheeehhhhhHHhhhc
Confidence            3788888888888998888754

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.05  E-value=0.053  Score=26.53  Aligned_cols=28  Identities=21%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             Ccccc--ccCccccCChHHHHHHHhHhcCCCC
Q 024455           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (267)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~~~H~~~   42 (267)
                      |.|.|  +.|+-.|+..-.|..|.-.  |+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck--HTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK--HTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH--HHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh--hcCC
Confidence            57888  6799999999999999988  8874

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.75  E-value=0.079  Score=28.99  Aligned_cols=26  Identities=23%  Similarity=0.616  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHHHhcCCCC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSLSAP  106 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~~~~  106 (267)
                      |++|+....++.+|++|+..-|..+|
T Consensus        27 cpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          27 CPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhccC
Confidence            88888888888888888765554444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.12  Score=24.79  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             ccccccCccccCChHHHHHHHhH
Q 024455           14 RHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .|.|..|||...+...++.|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999999999998654

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.37  E-value=0.038  Score=29.27  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             CCccccccCccccCChHHHHHHHhHhcCCCCCC-Ccccchh
Q 024455           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (267)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~H~~~~~-~C~~C~~   51 (267)
                      ++.|.|..||..               |.++.| .|++||.
T Consensus         3 ~~~~~C~vCG~i---------------~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYT---------------AVDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCE---------------EESCCCSBCTTTCC
T ss_pred             CcEEECCCCCCE---------------ecCCCCCcCCCCCC
Confidence            456788888853               455566 8888864

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.12  Score=24.82  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=16.7

Q ss_pred             ccccccccCChhhHHHHHHHhcC
Q 024455           81 CNLCMNIFDSPSSLIKHKEACSL  103 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h~~  103 (267)
                      |..|...-...++|..|+++-++
T Consensus         5 cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           5 CQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             ccccccccccchhhhhhhhcccc
Confidence            55666667788999999886443

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=90.08  E-value=0.26  Score=39.93  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCCceeeeeccccCCc-CCCCccceeeEEEecCCCCeeEecccCCCCCccccccccccCCHHhhccCCCHHHHHHHHHHH
Q 024455          133 RGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (267)
Q Consensus       133 ~~~~~~~~dcE~~g~~-~~~~~~~i~~v~vvd~~~~~~~~~~v~P~~~i~~~~~~~~GIt~~~l~~~~~~~~v~~~~~~~  211 (267)
                      ..-++.++|.|+.+.. .......+..+++.+..+...+...               ++....+..-.+..+++..+.++
T Consensus       133 ~~~r~~s~DIE~~~~~g~~~~~~~I~~Is~~~~~~~~~~~~~---------------~~~~~~v~~~~~E~~lL~~f~~~  197 (347)
T d1tgoa1         133 EELKMLAFDIETLYHEGEEFAEGPILMISYADEEGARVITWK---------------NIDLPYVDVVSTEKEMIKRFLKV  197 (347)
T ss_dssp             CCCCEEEEEEEECCCSSSSTTCSCEEEEEEEETTEEEEEESS---------------CCCCTTEEECSSHHHHHHHHHHH
T ss_pred             CCceEEEEEEEeccCCCCCcccCcEEEEEEecCCCcEEEEec---------------CccCccceeeCCHHHHHHHHHHH
Confidence            4446789999987543 2222344566666665544333210               11111233346888999999999


Q ss_pred             HhcCCCCCcccccCCCceEEEeccc-hhhhcccc
Q 024455          212 LNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR  244 (267)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~-~~Dl~~l~  244 (267)
                      +..      .+|     .+|+|||. .||+.+|.
T Consensus       198 i~~------~dP-----Dii~g~N~~~FD~pyL~  220 (347)
T d1tgoa1         198 VKE------KDP-----DVLITYNGDNFDFAYLK  220 (347)
T ss_dssp             HHH------HCC-----SEEEESSGGGTHHHHHH
T ss_pred             Hhh------cCc-----cceeeccccCCchHHHH
Confidence            942      222     39999999 78999983

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.78  E-value=0.1  Score=23.97  Aligned_cols=21  Identities=19%  Similarity=0.585  Sum_probs=17.1

Q ss_pred             ccccccccCChhhHHHHHHHh
Q 024455           81 CNLCMNIFDSPSSLIKHKEAC  101 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~h  101 (267)
                      |+.|=+.|.++.++..|.++-
T Consensus         4 cp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           4 CPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             CTTTCCEESCHHHHHHHHHHH
T ss_pred             CchhhHHhccccCceEEEEEe
Confidence            777888888899999998753

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.20  E-value=0.076  Score=26.48  Aligned_cols=18  Identities=44%  Similarity=0.741  Sum_probs=14.0

Q ss_pred             ccccccccCChhhHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHK   98 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~   98 (267)
                      |.-||-.|++.+.|..|+
T Consensus        11 c~pcgirfss~stleahq   28 (36)
T d1y0jb1          11 CLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CTTTCCBCSCHHHHHHHT
T ss_pred             ccccceeecChhHHHhhh
Confidence            667777888888888776

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.071  Score=31.68  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=14.5

Q ss_pred             CCCCCccccccCccccCChHH
Q 024455            9 KRSTARHKCVACYKQFKRKDH   29 (267)
Q Consensus         9 ~~~~k~~~C~~C~k~f~~~~~   29 (267)
                      ++..+.|.|+.|+++|+.-..
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda   29 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEA   29 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHH
T ss_pred             cccCCceECCCCCCCcchhhH
Confidence            345667888888888775443

>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.75  E-value=0.5  Score=37.30  Aligned_cols=33  Identities=24%  Similarity=-0.005  Sum_probs=24.4

Q ss_pred             CceEEEeccchhhhccccc--cCCCCceecccccc
Q 024455          227 KARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYR  259 (267)
Q Consensus       227 ~~~~lvgh~~~~Dl~~l~~--~~~~~~~~dt~~~~  259 (267)
                      .+.+-||||+.+|+.+|.-  ...-+.++||....
T Consensus       156 ~~I~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa  190 (292)
T d2hbka2         156 PSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHAS  190 (292)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred             cCeEEEeechHhhhhhhhhcccccccchHHHHHHH
Confidence            4568899999999999953  33345788986443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=0.29  Score=23.36  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=14.9

Q ss_pred             ccccccccCChhhHHHHHHH
Q 024455           81 CNLCMNIFDSPSSLIKHKEA  100 (267)
Q Consensus        81 C~~C~~~F~~~~~L~~H~~~  100 (267)
                      |+.|||...+...++-|.-.
T Consensus         5 c~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           5 CHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CSSSCCCCSSHHHHHHHHHH
T ss_pred             chhHHHHHhhccCceEEEee
Confidence            77778878777787777544

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.84  E-value=0.24  Score=23.69  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             Ccccc--ccCccccCChHHHHHHHhH
Q 024455           13 ARHKC--VACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        13 k~~~C--~~C~k~f~~~~~l~~H~~~   36 (267)
                      |.|.|  +.|.-.|.++.+++.|...
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHhh
Confidence            45778  5699999999999999754

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.56  E-value=0.65  Score=25.22  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=20.5

Q ss_pred             CCCccccccCccccCChHHHHHHHhH
Q 024455           11 STARHKCVACYKQFKRKDHLIEHMKI   36 (267)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (267)
                      .+.|-.|+.|+-...+..+|.+|...
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            56777888888888888888888765

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.38  E-value=0.31  Score=23.16  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=15.6

Q ss_pred             cccccccCChhhHHHHHHH
Q 024455           82 NLCMNIFDSPSSLIKHKEA  100 (267)
Q Consensus        82 ~~C~~~F~~~~~L~~H~~~  100 (267)
                      +-||+.|+++..|..|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4699999999999888763

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.75  E-value=0.48  Score=27.76  Aligned_cols=33  Identities=21%  Similarity=0.530  Sum_probs=27.7

Q ss_pred             CCCCCCCCccccccCccccCChHHHHHHHhHhcCC
Q 024455            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHS   40 (267)
Q Consensus         6 ~~~~~~~k~~~C~~C~k~f~~~~~l~~H~~~~~H~   40 (267)
                      +|...+...|.|..|.-.|.+-..|..|...  |.
T Consensus        10 ~~~~~~s~~yQC~HCd~K~~s~~el~~hl~~--hn   42 (75)
T d1x6fa1          10 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNI--HN   42 (75)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHH--HH
T ss_pred             CCcccCCceeeechhHHHHhhHHHHHHHHHh--cc
Confidence            3445667789999999999999999999988  64

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.14  Score=30.83  Aligned_cols=20  Identities=25%  Similarity=0.472  Sum_probs=17.7

Q ss_pred             cccccccccCChhhHHHHHH
Q 024455           80 GCNLCMNIFDSPSSLIKHKE   99 (267)
Q Consensus        80 ~C~~C~~~F~~~~~L~~H~~   99 (267)
                      -|..|+|.|.+...|..|++
T Consensus        17 YCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          17 RCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             EETTTTEECSSHHHHHHHTT
T ss_pred             ecccccCccCCHHHHHHHHc
Confidence            38999999999999999974