Citrus Sinensis ID: 024457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES
ccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccHHHccccccccccEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEEEEEEEEEccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEcccEEEEEEEEccccEEEEccccccccccccEEccccccc
MSPQLLTLVIQLLLLftpapttvtshynynftstsppsqsewrparatfyaasdprdkvggacgygdlekagygqatAGLSEILFERGQicgacfelrcfedirwcipgtsIIVTVTnfcapnygfnpdggghcnppnkhfvlpIEAFEKIAIWKagnmpvqyrRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKgsrtgwlpmgrnwgqnwhinanlknqplsfevttsdgltvtsynvapknwnfgqtfegkqfes
MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTstsppsqsewrPARATfyaasdprdkVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVapknwnfgqtfegkqfes
MSPQlltlviqllllFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES
****LLTLVIQLLLLFTPAPTTVTSHYNYNFT***************TFYAA***RDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQT********
***QLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF**
MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFT************ARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES
*SPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEG*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q9M9P0266 Expansin-A13 OS=Arabidops yes no 0.850 0.853 0.828 1e-113
Q7XUD0257 Expansin-A10 OS=Oryza sat yes no 0.842 0.875 0.632 2e-88
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.850 0.890 0.565 7e-68
Q40636251 Expansin-A2 OS=Oryza sati no no 0.838 0.892 0.551 2e-67
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.947 0.973 0.488 3e-66
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.835 0.906 0.566 4e-66
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.835 0.906 0.566 4e-66
Q38866255 Expansin-A2 OS=Arabidopsi no no 0.887 0.929 0.539 5e-66
O80932262 Expansin-A3 OS=Arabidopsi no no 0.857 0.874 0.543 6e-66
Q9C554250 Expansin-A1 OS=Arabidopsi no no 0.925 0.988 0.505 1e-65
>sp|Q9M9P0|EXP13_ARATH Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2 Back     alignment and function desciption
 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/227 (82%), Positives = 207/227 (91%)

Query: 41  EWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCF 100
           EWRPARAT+YAA++PRD VGGACGYGDL K+GYG AT GLSE LFERGQICGACFELRC 
Sbjct: 39  EWRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCV 98

Query: 101 EDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 160
           +D+RWCIPGTSII+T TNFCAPNYGF+PDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP
Sbjct: 99  DDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 158

Query: 161 VQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQN 220
           VQYRR N     S+RFT+DG  IFIS LI+NVAG+GD+ AVKIKGSRTGWLPMGRNWGQN
Sbjct: 159 VQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQN 218

Query: 221 WHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES 267
           WHINA+L+NQ LSFEVT+SD  TVTSYNV+PKNWN+GQTFEGKQFE+
Sbjct: 219 WHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQFET 265
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XUD0|EXP10_ORYSJ Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|Q38866|EXPA2_ARATH Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|O80932|EXPA3_ARATH Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
297832962266 ATEXPA13 [Arabidopsis lyrata subsp. lyra 0.850 0.853 0.845 1e-112
356551987263 PREDICTED: expansin-A13-like [Glycine ma 0.981 0.996 0.75 1e-112
356500993270 PREDICTED: expansin-A13-like [Glycine ma 0.973 0.962 0.743 1e-112
18396479266 expansin A13 [Arabidopsis thaliana] gi|2 0.850 0.853 0.828 1e-111
21618283266 Alpha-expansin 13 precursor (At-EXP13) ( 0.850 0.853 0.828 1e-111
255571277269 Alpha-expansin 13 precursor, putative [R 0.842 0.836 0.848 1e-111
225466245313 PREDICTED: expansin-A13-like [Vitis vini 0.925 0.789 0.752 1e-110
449462354268 PREDICTED: expansin-A13-like [Cucumis sa 1.0 0.996 0.742 1e-110
350538259267 expansin A3 precursor [Solanum lycopersi 0.910 0.910 0.758 1e-109
357491775266 Expansin [Medicago truncatula] gi|355517 0.850 0.853 0.806 1e-107
>gi|297832962|ref|XP_002884363.1| ATEXPA13 [Arabidopsis lyrata subsp. lyrata] gi|297330203|gb|EFH60622.1| ATEXPA13 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/227 (84%), Positives = 207/227 (91%)

Query: 41  EWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCF 100
           EWRPARAT+YAAS+PRD VGGACGYGDL K+GYG AT GLSE LFERGQICGACFELRC 
Sbjct: 39  EWRPARATYYAASNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCV 98

Query: 101 EDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 160
           +D+RWCIPGTSIIVT TNFCAPNYGF+PDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP
Sbjct: 99  DDLRWCIPGTSIIVTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 158

Query: 161 VQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQN 220
           VQYRR N     S+RFT+DG  IFIS LI+NVAG+GDV AVKIKGSRTGWLPMGRNWGQN
Sbjct: 159 VQYRRINCRREGSMRFTVDGGGIFISVLITNVAGSGDVAAVKIKGSRTGWLPMGRNWGQN 218

Query: 221 WHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES 267
           WHINA+LKNQ LSFEVT+SD  TVTSYNV+PKNWN+GQTFEGKQFE+
Sbjct: 219 WHINADLKNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQFET 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356551987|ref|XP_003544353.1| PREDICTED: expansin-A13-like [Glycine max] Back     alignment and taxonomy information
>gi|356500993|ref|XP_003519314.1| PREDICTED: expansin-A13-like [Glycine max] Back     alignment and taxonomy information
>gi|18396479|ref|NP_566197.1| expansin A13 [Arabidopsis thaliana] gi|20138030|sp|Q9M9P0.2|EXP13_ARATH RecName: Full=Expansin-A13; Short=AtEXPA13; AltName: Full=Alpha-expansin-13; Short=At-EXP13; Short=AtEx13; AltName: Full=Ath-ExpAlpha-1.22; Flags: Precursor gi|16604575|gb|AAL24089.1| putative expansin precursor protein [Arabidopsis thaliana] gi|21281243|gb|AAM45038.1| putative expansin precursor protein [Arabidopsis thaliana] gi|332640393|gb|AEE73914.1| expansin A13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21618283|gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255571277|ref|XP_002526588.1| Alpha-expansin 13 precursor, putative [Ricinus communis] gi|223534082|gb|EEF35800.1| Alpha-expansin 13 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225466245|ref|XP_002270003.1| PREDICTED: expansin-A13-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462354|ref|XP_004148906.1| PREDICTED: expansin-A13-like [Cucumis sativus] gi|449484934|ref|XP_004157021.1| PREDICTED: expansin-A13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|350538259|ref|NP_001234078.1| expansin A3 precursor [Solanum lycopersicum] gi|4138912|gb|AAD13631.1| expansin precursor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357491775|ref|XP_003616175.1| Expansin [Medicago truncatula] gi|355517510|gb|AES99133.1| Expansin [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2097695266 EXPA13 "expansin A13" [Arabido 0.906 0.909 0.788 1.5e-108
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.910 0.927 0.522 2.5e-65
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.850 0.890 0.565 2.5e-65
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.883 0.907 0.529 5.2e-65
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.887 0.929 0.539 1.8e-64
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.853 0.887 0.550 4.7e-64
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.838 0.868 0.546 1.6e-63
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.835 0.881 0.553 5.4e-63
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.835 0.861 0.549 6.9e-63
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.835 0.881 0.546 8.8e-63
TAIR|locus:2097695 EXPA13 "expansin A13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 194/246 (78%), Positives = 216/246 (87%)

Query:    26 HYNYNFTSTSPPS----QSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLS 81
             HY+ + +S S  S     SEWRPARAT+YAA++PRD VGGACGYGDL K+GYG AT GLS
Sbjct:    20 HYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLS 79

Query:    82 EILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHF 141
             E LFERGQICGACFELRC +D+RWCIPGTSII+T TNFCAPNYGF+PDGGGHCNPPNKHF
Sbjct:    80 ETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHF 139

Query:   142 VLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAV 201
             VLPIEAFEKIAIWKAGNMPVQYRR N     S+RFT+DG  IFIS LI+NVAG+GD+ AV
Sbjct:   140 VLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAV 199

Query:   202 KIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFE 261
             KIKGSRTGWLPMGRNWGQNWHINA+L+NQ LSFEVT+SD  TVTSYNV+PKNWN+GQTFE
Sbjct:   200 KIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFE 259

Query:   262 GKQFES 267
             GKQFE+
Sbjct:   260 GKQFET 265
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XUD0EXP10_ORYSJNo assigned EC number0.63270.84260.8754yesno
Q9M9P0EXP13_ARATHNo assigned EC number0.82810.85010.8533yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.56690.83520.9065N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__269__AT3G03220.1
annotation not avaliable (266 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 7e-86
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 4e-84
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 4e-36
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 5e-31
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-21
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 1e-12
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  256 bits (654), Expect = 7e-86
 Identities = 128/226 (56%), Positives = 147/226 (65%), Gaps = 1/226 (0%)

Query: 40  SEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRC 99
           S W  A ATFY   D    +GGACGYG+L   GYG  TA LS  LF  G  CGACFE++C
Sbjct: 23  SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKC 82

Query: 100 FEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNM 159
             D  WC+PG SII+T TNFC PN     + GG CNPP +HF L    F+KIA +KAG +
Sbjct: 83  VNDNIWCLPG-SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIV 141

Query: 160 PVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQ 219
           PVQYRR        IRFTI+G   F   LI+NV GAGD+VAV IKGS++ W  M RNWGQ
Sbjct: 142 PVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQ 201

Query: 220 NWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 265
           NW  N+ L  Q LSF+VTTSDG TV S N AP NW FGQT+ G QF
Sbjct: 202 NWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.96
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.95
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.94
PLN00115118 pollen allergen group 3; Provisional 99.9
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.88
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.98
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.3
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 98.06
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.96
PRK10672361 rare lipoprotein A; Provisional 97.4
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.57
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-72  Score=506.11  Aligned_cols=253  Identities=49%  Similarity=0.899  Sum_probs=229.6

Q ss_pred             CchhHHHHHHHHHHhhCCCCccccccccccccCCCCCCCCCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEe
Q 024457            1 MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGL   80 (267)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~   80 (267)
                      ||-.||-|+|.|-|| |-+.+           .......++|++++|||||++|+.++++|||||+++..++|+.++||+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAl   68 (256)
T PLN00193          1 MSKSLLGLAILLQFC-CYLFI-----------NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAAL   68 (256)
T ss_pred             CchhhHHHHHHHHHH-HHHHh-----------hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeec
Confidence            777888777655442 22211           112245568999999999999998899999999998888999999999


Q ss_pred             ChhhhcCCccCCceEEEEEe--CCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCe
Q 024457           81 SEILFERGQICGACFELRCF--EDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGN  158 (267)
Q Consensus        81 s~~~~~~g~~CG~C~eV~c~--~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~  158 (267)
                      |+++|++|++||+||||+|.  .++.+|.+|++|+|+|||.||+++++|+++++||++++.|||||.+||.+||....|+
T Consensus        69 s~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Gi  148 (256)
T PLN00193         69 STALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGI  148 (256)
T ss_pred             CHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCe
Confidence            99999999999999999995  2577898888999999999999999999999999998999999999999999999999


Q ss_pred             eeEEEEEEEEeecCceEEEEcCCCCcEEEEEEeeCCCcceEEEEEEecCCceeecCCCCCCeEEECCCCCCCCeEEEEEe
Q 024457          159 MPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT  238 (267)
Q Consensus       159 v~i~~~~V~C~~~gni~~~v~ss~~w~av~v~n~~g~~~I~sVeIk~~g~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs  238 (267)
                      |+|+||||+|+++|+|+|++++++||++|+|.|++|+++|++||||+++++|++|+|+||++|+++.++.++||+||||+
T Consensus       149 v~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts  228 (256)
T PLN00193        149 VPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTT  228 (256)
T ss_pred             EeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEE
Confidence            99999999999999999999999999999999999999999999999877899999999999999988888899999999


Q ss_pred             cCCcEEEEccccCCCCCCCcEEecC-CC
Q 024457          239 SDGLTVTSYNVAPKNWNFGQTFEGK-QF  265 (267)
Q Consensus       239 ~~G~~v~~~~vip~~w~~G~~y~~~-qF  265 (267)
                      .+|+++++.||||++|++|++|++. ||
T Consensus       229 ~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        229 TDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             cCCeEEEECceeCCCCCCCCeEecCccC
Confidence            9999999999999999999999999 98

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 1e-17
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 6e-15
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 19/234 (8%)
Query: 40  SEWRPARATFYA---ASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFE 96
            +W  A++T+Y     + P+D  GGACGY D++K  +   T   +  +F+ G+ CG+CFE
Sbjct: 17  DKWLDAKSTWYGKPTGAGPKDN-GGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75
Query: 97  LRCFEDIRWCIPGTSIIVTVTNFC-APNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWK 155
           ++C +       G  ++V +T+    P   ++ D  GH       F    +  ++  +  
Sbjct: 76  IKCTKPE--ACSGEPVVVHITDDNEEPIAPYHFDLSGHA------FGAMAKKGDEQKLRS 127
Query: 156 AGNMPVQYRRYNFILILSIRFTI---DGSDI-FISALISNVAGAGDVVAVKIK-GSRTGW 210
           AG + +Q+RR         + T     GS+  +++ L+  V G GDVVAV IK   +  W
Sbjct: 128 AGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKW 187
Query: 211 LPMGRNWGQNWHINANLK-NQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGK 263
           + +  +WG  W I+   K   P +   TT  G    + +V P+ W    ++E K
Sbjct: 188 IELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 241
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 1e-61
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 2e-58
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 3e-43
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 3e-30
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 7e-30
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 8e-30
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 3e-16
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  193 bits (492), Expect = 1e-61
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 32  TSTSPPSQSEWRPARATFYAASDPR--DKVGGACGYGDLEKAGYGQATAGLSEILFERGQ 89
            + +     +W  ARAT+Y   +       GGACG  ++    Y   TA  +  +F+ G+
Sbjct: 9   PNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGK 68

Query: 90  ICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFE 149
            CG+C+E+RC E         ++ +T  N+                    HF L  +AF 
Sbjct: 69  GCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY--------------HFDLSGKAFG 114

Query: 150 KIA-------IWKAGNMPVQYRR----YNFILILSIRFTIDGSDIFISALISNVAGAGDV 198
            +A       I   G M V++RR    Y     +        +  +++ L+  VA  GD+
Sbjct: 115 SLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDI 174

Query: 199 VAVKIKGSRTG-WLPMGRNWGQNWHIN-ANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNF 256
           V ++I+   +  W PM  +WG  W ++ A     P S  +T+  G  V + +V P NW  
Sbjct: 175 VLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRP 234

Query: 257 GQTFEGK-QF 265
              +    QF
Sbjct: 235 DAVYTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.93
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.65
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.3
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.21
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.19
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.17
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 98.02
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.98
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.93
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 95.18
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=2.9e-64  Score=449.52  Aligned_cols=211  Identities=29%  Similarity=0.607  Sum_probs=187.7

Q ss_pred             CCCCceeeEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEE
Q 024457           38 SQSEWRPARATFYAASDPRDK--VGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVT  115 (267)
Q Consensus        38 ~~~~~~~g~aT~Yg~~~~~~~--~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~  115 (267)
                      .+++|+.|+||||+++++.|+  ++|||||++++..|++.++||+|+.+|++|++||+||||+|.++ .+|.+ ++|+|+
T Consensus        15 ~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~-~~C~~-~~v~V~   92 (241)
T 1n10_A           15 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKP-EACSG-EPVVVH   92 (241)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSS-TTBCS-CCEEEE
T ss_pred             ccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCC-CccCC-CCEEEE
Confidence            357899999999999988777  89999999988889999999999999999999999999999864 47954 489999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc-------ccCCeeeEEEEEEEEeecC--ceEEEEc--CCCCc
Q 024457          116 VTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAI-------WKAGNMPVQYRRYNFILIL--SIRFTID--GSDIF  184 (267)
Q Consensus       116 VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~-------~~~G~v~i~~~~V~C~~~g--ni~~~v~--ss~~w  184 (267)
                      |||+|+            |++++.|||||+.||++||.       +..|+|+|+||||+|+++|  ||+|+++  |++||
T Consensus        93 VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~  160 (241)
T 1n10_A           93 ITDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY  160 (241)
T ss_dssp             EEEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTE
T ss_pred             EeEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcce
Confidence            999997            76667999999999999998       7899999999999999984  8999998  79999


Q ss_pred             EEEEEEeeCCCcceEEEEEEecC-CceeecCCCCCCeEEECCC--CCCCCeEEEEEecCCcEEEEccccCCCCCCCcEEe
Q 024457          185 ISALISNVAGAGDVVAVKIKGSR-TGWLPMGRNWGQNWHINAN--LKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFE  261 (267)
Q Consensus       185 ~av~v~n~~g~~~I~sVeIk~~g-~~W~~m~R~~g~~W~~~~~--~~g~p~~~RvTs~~G~~v~~~~vip~~w~~G~~y~  261 (267)
                      ++|+|+|++|.++|++||||+++ +.|++|+|+||++|+++..  +.+ ||+||||+.+|++|+++||||++|++|++|+
T Consensus       161 ~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~  239 (241)
T 1n10_A          161 LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE  239 (241)
T ss_dssp             EEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEE
T ss_pred             EEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEe
Confidence            99999999988999999999987 5999999999999999875  666 9999999999999999999999999999999


Q ss_pred             cC
Q 024457          262 GK  263 (267)
Q Consensus       262 ~~  263 (267)
                      +.
T Consensus       240 ~~  241 (241)
T 1n10_A          240 SK  241 (241)
T ss_dssp             C-
T ss_pred             CC
Confidence            74
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 2e-33
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 1e-31
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 1e-31
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 8e-26
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  116 bits (292), Expect = 2e-33
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 40  SEWRPARATFYAASD--PRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFEL 97
            +W  A++T+Y           GGACGY D++K  +   T   +  +F+ G+ CG+CFE+
Sbjct: 15  DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEI 74

Query: 98  RCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAG 157
           +C      C     ++V +T+         P    H +     F    +  ++  +  AG
Sbjct: 75  KC-TKPEACSGE-PVVVHITDDNEE-----PIAPYHFDLSGHAFGAMAKKGDEQKLRSAG 127

Query: 158 NMPVQYRR 165
            + +Q+RR
Sbjct: 128 ELELQFRR 135
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.93
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.63
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.2
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=5.9e-37  Score=251.71  Aligned_cols=121  Identities=30%  Similarity=0.560  Sum_probs=101.5

Q ss_pred             CCCCceeeEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEE
Q 024457           38 SQSEWRPARATFYAASDPRDK--VGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVT  115 (267)
Q Consensus        38 ~~~~~~~g~aT~Yg~~~~~~~--~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~  115 (267)
                      ..++|++|+||||+++++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.+ +.+| .+++|+|+
T Consensus        13 ~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c-~~~sv~V~   90 (143)
T d1n10a2          13 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEAC-SGEPVVVH   90 (143)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTB-CSCCEEEE
T ss_pred             cCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcc-cCCCEEEE
Confidence            348999999999999887653  5799999998888999999999999999999999999999984 6788 45599999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcc-------cCCeeeEEEEEEEEeecC
Q 024457          116 VTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIW-------KAGNMPVQYRRYNFILIL  172 (267)
Q Consensus       116 VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~-------~~G~v~i~~~~V~C~~~g  172 (267)
                      |||.||+           |. +..|||||+.||.+||+.       +.|+|+|+||||+|+++|
T Consensus        91 vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          91 ITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            9999995           22 357999999999999973       679999999999999976
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure